Citrus Sinensis ID: 004879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHHcHHHHHHHHccccEEEEEccccccccHHHcccccccEEEEEEEcccEEEEEEEEEEEccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHccEEcccccHHHHHHcccccccccHHHHHHcccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccHcccccccccHccccccccHHHHHHHHHHHHHHHcHccHHHccccccccccccccccccccccccEEEEEEccccHHHcccccHHHHHccHHHHHHcccEEEEEEcccccccHHHHHHHHHccEEEEEEEcccEEEEEEEEEEEccEEEEEEccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHcccccHHHHHHccccHHHHccccccccccccccEEHHHHHEEEccEEEEEcccHHHHEEccccccccHHHHHHccccEEEEEEccccccccccccccEcEccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHcccEEEccccccccHHEEEEcc
MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELThrgvsehseldvfanqnepanedlvlnnsEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESkkravhepvddmpWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTsssissglHVIHIAAEMapvakvggLGDVVAGLGKALqkkghlveivlpkydcmqydriddLRALDVVVESyfdgrlfknKVWVStieglpvyfiephhpdkffwrgqfygehddfrrFSFFSRAALELLLQagkqpdiihchdwqtafvaplywdlyvpkglnsarvcftchnfeyqgtapakelascgldvqqlnrpdrmqdnsahdrinplkgAIVFSNIVttvspsyaqevrtseggqglhstlnfhsKKFVGILngidtdawnpatDTFLKVQYNandlqgkaeNKESIRKhlglssadarkplvgcitrlvpqkgvHLIRHAIYRTLELGGQFillgsspvphiqvypiLLSSFSFLRKHIFNICNLYIKlgqggdltvnnncepwLHHIEVWC
MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAelnsvkdaderVVMLEMERSSLESSLKELESklsisqedvaKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKeeskkravhepvddmpWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYfdgrlfknkVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLglssadarkPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVmlemersslesslkelesklsISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPvakvgglgdvvaglgkalQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDfrrfsffsrAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
****************KIHVELL**************************************************************************************************************KLSTLKVECKDLYEKVENLQGLLAKA*******************************************************************SYVQLYQ*************************VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV*****************INPLKGAIVFSNIVTTVSPSYAQEV******QGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND**********************RKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVW*
*************AQEKIHVELLEDQL***********************************************************I*****************VMLEM**S*****LKEL****************LKVECKDLYEKVENLQGLLA************************************************************************************************************FWSRLLLIIDG**********************************************************VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEME***************SISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
****ETDARIRVAAQEKIHVELLEDQLQKLQHELTHR*****SELD****Q***ANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE******************WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYM*CK***************SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
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MRLAETDARIRVxxxxxxxxxxxxxxxxxxxxxLTHRGVSEHSELDVFANQNEPANEDLVLNNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADQxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHIEVWC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query725 2.2.26 [Sep-21-2011]
Q0WVX5 1040 Probable starch synthase yes no 0.902 0.628 0.747 0.0
Q6MAS9500 Glycogen synthase OS=Prot yes no 0.474 0.688 0.5 7e-96
Q604D9487 Glycogen synthase 2 OS=Me yes no 0.468 0.698 0.498 7e-92
Q2JNM6491 Glycogen synthase 1 OS=Sy yes no 0.460 0.680 0.495 1e-85
Q2JSZ9 491 Glycogen synthase 1 OS=Sy yes no 0.497 0.735 0.459 5e-85
Q3M9U1492 Glycogen synthase 1 OS=An yes no 0.463 0.682 0.469 7e-85
Q3JEW3 487 Glycogen synthase 1 OS=Ni yes no 0.506 0.753 0.432 2e-84
P72623 491 Probable glycogen synthas N/A no 0.496 0.733 0.436 4e-83
Q8Z0Q9492 Probable glycogen synthas yes no 0.463 0.682 0.454 5e-83
F4IAG2 1042 Starch synthase 3, chloro no no 0.408 0.284 0.455 5e-75
>sp|Q0WVX5|SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1 Back     alignment and function desciption
 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/676 (74%), Positives = 591/676 (87%), Gaps = 22/676 (3%)

Query: 1   MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLV 60
           M+L+ETD RI+ AAQEK HVELLE+QL+KL+HE+                   P   D  
Sbjct: 232 MKLSETDERIKTAAQEKAHVELLEEQLEKLRHEMI-----------------SPIESD-- 272

Query: 61  LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 120
                + + SKEL++LK ENLSL+NDI++LK+EL+SVKD  ERVV+LE E S LESS+K+
Sbjct: 273 ---GYVLALSKELETLKLENLSLRNDIEMLKSELDSVKDTGERVVVLEKECSGLESSVKD 329

Query: 121 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV 180
           LESKLS+SQEDV++LSTLK+EC DL+ KVE LQ LL +ATKQA+QA+ VLQQNQ+LR KV
Sbjct: 330 LESKLSVSQEDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKV 389

Query: 181 DKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 240
           DK+EESL EAN+YK SSEK+QQYNELMQ K+ LLEERL++SD EI SYVQLYQES+KEFQ
Sbjct: 390 DKIEESLKEANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQ 449

Query: 241 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNG 300
           +TL SLKEESKK++  EPVDDMPW++WSRLLL +DGWLLEKK+++++A LLR+MVWK++ 
Sbjct: 450 ETLESLKEESKKKSRDEPVDDMPWDYWSRLLLTVDGWLLEKKIASNDADLLRDMVWKKDR 509

Query: 301 RIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGK 360
           RI D Y++ K+KNE +AIS FLKL SS  SSGL+V+HIAAEMAPVAKVGGLGDVVAGLGK
Sbjct: 510 RIHDTYIDVKDKNERDAISAFLKLVSSPTSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGK 569

Query: 361 ALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFI 420
           ALQ+KGHLVEI+LPKYDCMQYDR+ DLRALD VVESYFDG+L+KNK+W+ T+EGLPV+FI
Sbjct: 570 ALQRKGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFI 629

Query: 421 EPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 480
           EP HP KFFWRGQFYGE DDFRRFS+FSRAALELLLQ+GK+PDIIHCHDWQTAFVAPLYW
Sbjct: 630 EPQHPSKFFWRGQFYGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYW 689

Query: 481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540
           DLY PKGL+SAR+CFTCHNFEYQGTA A EL SCGLDV QLNRPDRMQD+S+ DR+NP+K
Sbjct: 690 DLYAPKGLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGDRVNPVK 749

Query: 541 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL 600
           GAI+FSNIVTTVSP+YAQEVRT+EGG+GLHSTLNFHSKKF+GILNGIDTD+WNPATD FL
Sbjct: 750 GAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDTDSWNPATDPFL 809

Query: 601 KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL 660
           K Q+NA DLQGK ENK ++RK LGLSSA++R+PLVGCITRLVPQKGVHLIRHAIYRTLEL
Sbjct: 810 KAQFNAKDLQGKEENKHALRKQLGLSSAESRRPLVGCITRLVPQKGVHLIRHAIYRTLEL 869

Query: 661 GGQFILLGSSPVPHIQ 676
           GGQF+LLGSSPVPHIQ
Sbjct: 870 GGQFVLLGSSPVPHIQ 885
Probably involved in the priming of starch granule formation. May play a regulatory role in the control of starch accumulation in plastids. Is necessary and sufficient to establish the correct number of starch granules observed in chloroplasts.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q6MAS9|GLGA_PARUW Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1 Back     alignment and function description
>sp|Q604D9|GLGA2_METCA Glycogen synthase 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=glgA2 PE=3 SV=2 Back     alignment and function description
>sp|Q2JNM6|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=glgA1 PE=3 SV=1 Back     alignment and function description
>sp|Q2JSZ9|GLGA1_SYNJA Glycogen synthase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1 Back     alignment and function description
>sp|Q3M9U1|GLGA1_ANAVT Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1 Back     alignment and function description
>sp|Q3JEW3|GLGA1_NITOC Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1 PE=3 SV=1 Back     alignment and function description
>sp|P72623|GLGA2_SYNY3 Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=glgA2 PE=1 SV=1 Back     alignment and function description
>sp|Q8Z0Q9|GLGA2_NOSS1 Probable glycogen synthase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=glgA2 PE=3 SV=1 Back     alignment and function description
>sp|F4IAG2|SSY3_ARATH Starch synthase 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query725
225463426 1011 PREDICTED: uncharacterized protein LOC10 0.922 0.661 0.794 0.0
224055495 887 predicted protein [Populus trichocarpa] 0.903 0.738 0.789 0.0
356512165 989 PREDICTED: uncharacterized protein LOC10 0.931 0.682 0.761 0.0
356524929 873 PREDICTED: glycogen synthase-like [Glyci 0.929 0.772 0.749 0.0
42566924 1040 starch synthase 4 [Arabidopsis thaliana] 0.902 0.628 0.747 0.0
4582783 874 starch synthase, isoform V [Vigna unguic 0.932 0.773 0.743 0.0
350538831 1001 starch synthase IV [Solanum lycopersicum 0.921 0.667 0.747 0.0
255557389 998 starch synthase, putative [Ricinus commu 0.862 0.626 0.748 0.0
2832698 1071 starch synthase-like protein [Arabidopsi 0.902 0.610 0.733 0.0
357132826 921 PREDICTED: glycogen synthase-like [Brach 0.859 0.676 0.605 0.0
>gi|225463426|ref|XP_002274716.1| PREDICTED: uncharacterized protein LOC100257130 [Vitis vinifera] gi|297740652|emb|CBI30834.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/677 (79%), Positives = 609/677 (89%), Gaps = 8/677 (1%)

Query: 1   MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLV 60
           MRLAET+ARI+VAAQEKIHVE+LE+QL  L++EL+HRGV+E S  D+  N N+  +    
Sbjct: 190 MRLAETNARIKVAAQEKIHVEILEEQLVNLRNELSHRGVTEGSGADMHENWNKAFDG--- 246

Query: 61  LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 120
                +HS  KEL  L+TEN+SLK+DI  LK EL+ V+  D+RVVMLE ERS LES+LKE
Sbjct: 247 -----VHSLGKELSLLRTENVSLKDDILALKEELSHVQKTDKRVVMLEKERSFLESALKE 301

Query: 121 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV 180
           LE KL  SQEDV+KLSTLK ECK+L+++VENLQ LL +AT QAD+AI VL+QNQELRKKV
Sbjct: 302 LEFKLVASQEDVSKLSTLKFECKNLWDRVENLQVLLDRATDQADKAILVLEQNQELRKKV 361

Query: 181 DKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 240
           D LEESL+EAN+YKLSSEKMQQYN+LMQ+K+KLLEERL RSDEEI SYV+LYQES+KEFQ
Sbjct: 362 DMLEESLEEANVYKLSSEKMQQYNDLMQKKIKLLEERLDRSDEEILSYVKLYQESIKEFQ 421

Query: 241 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNG 300
           DTL++LKEESK+RA++EPVDDMPW+FWSRLLLIIDGWLLEKK+S ++AKLLREMVWKR+G
Sbjct: 422 DTLNNLKEESKRRALNEPVDDMPWDFWSRLLLIIDGWLLEKKISANDAKLLREMVWKRDG 481

Query: 301 RIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGK 360
           RIRDAY+ CK+ NEHEA++ FLKLTSS   S LHVIHIAAEMAPVAKVGGLGDVV+GL +
Sbjct: 482 RIRDAYLVCKDTNEHEAVAIFLKLTSSPKRSRLHVIHIAAEMAPVAKVGGLGDVVSGLSR 541

Query: 361 ALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFI 420
           ALQKKGHLVEIVLPKYDCMQYDRI DLR LD+ +ESYFDGRLF+NKVWV T+EGLPVYFI
Sbjct: 542 ALQKKGHLVEIVLPKYDCMQYDRIRDLRVLDMELESYFDGRLFRNKVWVGTVEGLPVYFI 601

Query: 421 EPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 480
           EPHHP KFFWRG  YGEHDDFRRFS+FSRAALELLLQAGK+PDIIHCHDWQTAFVAPLYW
Sbjct: 602 EPHHPSKFFWRGTVYGEHDDFRRFSYFSRAALELLLQAGKKPDIIHCHDWQTAFVAPLYW 661

Query: 481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540
           DLY PKGLNSAR+CFTCHNFEYQGTAPA E+ASCGLDV  LNRPDRMQDNSAHDR+NP+K
Sbjct: 662 DLYAPKGLNSARICFTCHNFEYQGTAPASEMASCGLDVHHLNRPDRMQDNSAHDRVNPVK 721

Query: 541 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL 600
           GAIVFSNIVTTVSP+YAQEVRTSEGG+GLHSTLN HSKKF+GILNGIDTDAW+PATD +L
Sbjct: 722 GAIVFSNIVTTVSPTYAQEVRTSEGGRGLHSTLNSHSKKFIGILNGIDTDAWDPATDVYL 781

Query: 601 KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL 660
           K Q+NANDLQGKAENKE++RKHLGLS AD R+PLVGCI RLVPQKG+HLIRHAIYRTLEL
Sbjct: 782 KSQFNANDLQGKAENKEALRKHLGLSYADTRRPLVGCIARLVPQKGIHLIRHAIYRTLEL 841

Query: 661 GGQFILLGSSPVPHIQV 677
           GGQF+LLGSSPVPHIQV
Sbjct: 842 GGQFVLLGSSPVPHIQV 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224055495|ref|XP_002298514.1| predicted protein [Populus trichocarpa] gi|222845772|gb|EEE83319.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512165|ref|XP_003524791.1| PREDICTED: uncharacterized protein LOC100788308 [Glycine max] Back     alignment and taxonomy information
>gi|356524929|ref|XP_003531080.1| PREDICTED: glycogen synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|42566924|ref|NP_193558.3| starch synthase 4 [Arabidopsis thaliana] gi|122230204|sp|Q0WVX5.1|SSY4_ARATH RecName: Full=Probable starch synthase 4, chloroplastic/amyloplastic; Short=AtSS4; AltName: Full=Soluble starch synthase IV; Flags: Precursor gi|110741548|dbj|BAE98723.1| starch synthase-like protein [Arabidopsis thaliana] gi|332658615|gb|AEE84015.1| starch synthase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4582783|emb|CAB40375.1| starch synthase, isoform V [Vigna unguiculata] Back     alignment and taxonomy information
>gi|350538831|ref|NP_001234617.1| starch synthase IV [Solanum lycopersicum] gi|247643234|gb|ACT09058.1| starch synthase IV precursor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|255557389|ref|XP_002519725.1| starch synthase, putative [Ricinus communis] gi|223541142|gb|EEF42698.1| starch synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2832698|emb|CAA16796.1| starch synthase-like protein [Arabidopsis thaliana] gi|7268617|emb|CAB78826.1| starch synthase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357132826|ref|XP_003568029.1| PREDICTED: glycogen synthase-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query725
TAIR|locus:2141936 1040 SS4 "starch synthase 4" [Arabi 0.911 0.635 0.671 4.1e-246
TAIR|locus:505006717460 AT5G65685 [Arabidopsis thalian 0.546 0.860 0.312 3.3e-56
TIGR_CMR|GSU_3257484 GSU_3257 "glycogen synthase" [ 0.460 0.690 0.313 4.2e-41
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.457 0.662 0.317 1.5e-35
TIGR_CMR|BA_5120476 BA_5120 "glycogen synthase" [B 0.464 0.707 0.275 9e-35
UNIPROTKB|P0A6U8477 glgA [Escherichia coli K-12 (t 0.446 0.679 0.272 7.8e-25
TAIR|locus:2102102792 SS2 "starch synthase 2" [Arabi 0.449 0.411 0.296 2.9e-22
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.277 0.308 0.361 1.4e-21
UNIPROTKB|Q9KRB6484 glgA "Glycogen synthase" [Vibr 0.343 0.514 0.299 1.9e-21
TIGR_CMR|VC_1726484 VC_1726 "glycogen synthase" [V 0.343 0.514 0.299 1.9e-21
TAIR|locus:2141936 SS4 "starch synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2371 (839.7 bits), Expect = 4.1e-246, P = 4.1e-246
 Identities = 448/667 (67%), Positives = 537/667 (80%)

Query:    13 AAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL---NNSEIHSF 69
             A Q +I+V  LE +L +    +      E + +++   Q E    +++    ++  + + 
Sbjct:   222 ALQGEINV--LEMKLSETDERIK-TAAQEKAHVELLEEQLEKLRHEMISPIESDGYVLAL 278

Query:    70 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVXXXXXXXXXXXXXXXXXXXXXISQ 129
             SKEL++LK ENLSL+NDI++LK+EL+SVKD  ERVV                     +SQ
Sbjct:   279 SKELETLKLENLSLRNDIEMLKSELDSVKDTGERVVVLEKECSGLESSVKDLESKLSVSQ 338

Query:   130 EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 189
             EDV++LSTLK+EC DL+ KVE LQ LL +ATKQA+QA+ VLQQNQ+LR KVDK+EESL E
Sbjct:   339 EDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESLKE 398

Query:   190 ANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 249
             AN+YK SSEK+QQYNELMQ K+ LLEERL++SD EI SYVQLYQES+KEFQ+TL SLKEE
Sbjct:   399 ANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQETLESLKEE 458

Query:   250 SKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMEC 309
             SKK++  EPVDDMPW++WSRLLL +DGWLLEKK+++++A LLR+MVWK++ RI D Y++ 
Sbjct:   459 SKKKSRDEPVDDMPWDYWSRLLLTVDGWLLEKKIASNDADLLRDMVWKKDRRIHDTYIDV 518

Query:   310 KEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPXXXXXXXXXXXXXXXXXXQKKGHLV 369
             K+KNE +AIS FLKL SS  SSGL+V+HIAAEMAP                  Q+KGHLV
Sbjct:   519 KDKNERDAISAFLKLVSSPTSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLV 578

Query:   370 EIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFF 429
             EI+LPKYDCMQYDR+ DLRALD VVESYFDG+L+KNK+W+ T+EGLPV+FIEP HP KFF
Sbjct:   579 EIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFF 638

Query:   430 WRGQFYGEHDDXXXXXXXXXAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 489
             WRGQFYGE DD         AALELLLQ+GK+PDIIHCHDWQTAFVAPLYWDLY PKGL+
Sbjct:   639 WRGQFYGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLD 698

Query:   490 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIV 549
             SAR+CFTCHNFEYQGTA A EL SCGLDV QLNRPDRMQD+S+ DR+NP+KGAI+FSNIV
Sbjct:   699 SARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIV 758

Query:   550 TTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL 609
             TTVSP+YAQEVRT+EGG+GLHSTLNFHSKKF+GILNGIDTD+WNPATD FLK Q+NA DL
Sbjct:   759 TTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDL 818

Query:   610 QGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGS 669
             QGK ENK ++RK LGLSSA++R+PLVGCITRLVPQKGVHLIRHAIYRTLELGGQF+LLGS
Sbjct:   819 QGKEENKHALRKQLGLSSAESRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGS 878

Query:   670 SPVPHIQ 676
             SPVPHIQ
Sbjct:   879 SPVPHIQ 885
GO:0009011 "starch synthase activity" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009250 "glucan biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005982 "starch metabolic process" evidence=RCA;IMP
GO:0000272 "polysaccharide catabolic process" evidence=RCA
GO:0001666 "response to hypoxia" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:505006717 AT5G65685 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6U8 glgA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WVX5SSY4_ARATH2, ., 4, ., 1, ., 2, 10.74700.90200.6288yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.4.1.21LOW CONFIDENCE prediction!
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 0.0
TIGR02095473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-142
cd03791476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-140
PRK00654466 PRK00654, glgA, glycogen synthase; Provisional 1e-134
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 2e-99
COG0297487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 2e-90
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 6e-82
PRK14099485 PRK14099, PRK14099, glycogen synthase; Provisional 5e-48
PRK14098489 PRK14098, PRK14098, glycogen synthase; Provisional 9e-40
cd03801374 cd03801, GT1_YqgM_like, This family is most closel 3e-13
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-10
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
pfam12718143 pfam12718, Tropomyosin_1, Tropomyosin like 2e-08
pfam13579158 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4 6e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
cd03798377 cd03798, GT1_wlbH_like, This family is most closel 1e-06
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 2e-06
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 2e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-06
pfam12718143 pfam12718, Tropomyosin_1, Tropomyosin like 6e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 7e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR03346852 TIGR03346, chaperone_ClpB, ATP-dependent chaperone 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 5e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
pfam07111739 pfam07111, HCR, Alpha helical coiled-coil rod prot 9e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 2e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
COG3096 1480 COG3096, MukB, Uncharacterized protein involved in 2e-04
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 2e-04
COG50221463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 2e-04
TIGR006061311 TIGR00606, rad50, rad50 3e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 3e-04
TIGR006061311 TIGR00606, rad50, rad50 4e-04
pfam13851201 pfam13851, GAS, Growth-arrest specific micro-tubul 8e-04
PRK01156895 PRK01156, PRK01156, chromosome segregation protein 8e-04
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 0.001
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 0.001
cd03807365 cd03807, GT1_WbnK_like, This family is most closel 0.001
TIGR04320356 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exc 0.001
PRK01156895 PRK01156, PRK01156, chromosome segregation protein 0.002
pfam07926132 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein 0.002
cd03825365 cd03825, GT1_wcfI_like, This family is most closel 0.002
pfam09787509 pfam09787, Golgin_A5, Golgin subfamily A member 5 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
PHA02562562 PHA02562, 46, endonuclease subunit; Provisional 0.003
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 0.003
pfam05667536 pfam05667, DUF812, Protein of unknown function (DU 0.003
pfam09728309 pfam09728, Taxilin, Myosin-like coiled-coil protei 0.004
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information 
 Score = 1189 bits (3078), Expect = 0.0
 Identities = 494/677 (72%), Positives = 567/677 (83%), Gaps = 29/677 (4%)

Query: 1   MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLV 60
           MRL+ETDARI++AAQEKIHVE+LE+QL+KL++EL  RG +E                   
Sbjct: 177 MRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATE------------------- 217

Query: 61  LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 120
                +HS SKELD LK EN+ LK+DI+ LKAEL  V + +ERV  LE ERS L++SL+E
Sbjct: 218 --GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRE 275

Query: 121 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV 180
           LESK  ++QEDV+KLS L+ +C   +EKVENLQ LL +AT Q ++A  VL QNQ+LR KV
Sbjct: 276 LESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKV 333

Query: 181 DKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 240
           DKLE SL EAN+ K SS K+    EL+QQK+KLLEERLQ SD EIHSY+QLYQES+KEFQ
Sbjct: 334 DKLEASLKEANVSKFSSYKV----ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQ 389

Query: 241 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNG 300
           DTL  LKEESKKR++  P DDMP EFWSR+LL+IDGWLLEKK+S ++AKLLREMVWKR+G
Sbjct: 390 DTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDG 449

Query: 301 RIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGK 360
           RIR+AY+ CK KNE EA+  FLKLT S  SSGLH++HIAAEMAPVAKVGGL DVV+GLGK
Sbjct: 450 RIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGK 509

Query: 361 ALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFI 420
           ALQKKGHLVEIVLPKYDCMQYD+I +L+ LDVVVESYFDG LFKNK+W  T+EGLPVYFI
Sbjct: 510 ALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFI 569

Query: 421 EPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 480
           EP HP KFFWR Q+YGEHDDF+RFS+FSRAALELL Q+GK+PDIIHCHDWQTAFVAPLYW
Sbjct: 570 EPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYW 629

Query: 481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 540
           DLY PKG NSAR+CFTCHNFEYQGTAPA +LASCGLDV QL+RPDRMQDN+ H RIN +K
Sbjct: 630 DLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNA-HGRINVVK 688

Query: 541 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL 600
           GAIV+SNIVTTVSP+YAQEVR+ EGG+GL  TL FHSKKFVGILNGIDTD WNP+TD FL
Sbjct: 689 GAIVYSNIVTTVSPTYAQEVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFL 747

Query: 601 KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL 660
           KVQYNANDLQGKA NK ++RK LGLSSADA +PLVGCITRLVPQKGVHLIRHAIY+T EL
Sbjct: 748 KVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAEL 807

Query: 661 GGQFILLGSSPVPHIQV 677
           GGQF+LLGSSPVPHIQ 
Sbjct: 808 GGQFVLLGSSPVPHIQR 824

Length = 977
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like Back     alignment and domain information
>gnl|CDD|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein Back     alignment and domain information
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5 Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812) Back     alignment and domain information
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 725
PLN02939977 transferase, transferring glycosyl groups 100.0
PRK14099485 glycogen synthase; Provisional 100.0
PRK14098489 glycogen synthase; Provisional 100.0
PLN023161036 synthase/transferase 100.0
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PRK00654466 glgA glycogen synthase; Provisional 100.0
COG0297487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
cd03791476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
TIGR02094601 more_P_ylases alpha-glucan phosphorylases. This fa 100.0
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 100.0
TIGR02470784 sucr_synth sucrose synthase. This model represents 99.96
TIGR02472439 sucr_P_syn_N sucrose-phosphate synthase, putative, 99.96
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 99.96
cd03796398 GT1_PIG-A_like This family is most closely related 99.96
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 99.96
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 99.96
PLN02871465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 99.95
PRK10307412 putative glycosyl transferase; Provisional 99.95
cd04962371 GT1_like_5 This family is most closely related to 99.95
PLN00142815 sucrose synthase 99.94
PRK10125405 putative glycosyl transferase; Provisional 99.94
cd03800398 GT1_Sucrose_synthase This family is most closely r 99.94
cd03812358 GT1_CapH_like This family is most closely related 99.93
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 99.93
cd03805392 GT1_ALG2_like This family is most closely related 99.93
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 99.93
cd04951360 GT1_WbdM_like This family is most closely related 99.93
PLN02846 462 digalactosyldiacylglycerol synthase 99.93
cd03802335 GT1_AviGT4_like This family is most closely relate 99.93
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 99.92
cd04955363 GT1_like_6 This family is most closely related to 99.92
cd03819355 GT1_WavL_like This family is most closely related 99.92
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 99.92
cd03821375 GT1_Bme6_like This family is most closely related 99.91
cd03818396 GT1_ExpC_like This family is most closely related 99.91
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 99.91
cd03807365 GT1_WbnK_like This family is most closely related 99.91
cd03795357 GT1_like_4 This family is most closely related to 99.9
cd03817374 GT1_UGDG_like This family is most closely related 99.9
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 99.9
cd03823359 GT1_ExpE7_like This family is most closely related 99.89
PRK09922359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 99.89
cd03825365 GT1_wcfI_like This family is most closely related 99.89
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 99.89
cd03794394 GT1_wbuB_like This family is most closely related 99.89
cd03814364 GT1_like_2 This family is most closely related to 99.88
PLN02501 794 digalactosyldiacylglycerol synthase 99.88
cd03809365 GT1_mtfB_like This family is most closely related 99.88
cd03822366 GT1_ecORF704_like This family is most closely rela 99.87
cd03801374 GT1_YqgM_like This family is most closely related 99.87
cd03811353 GT1_WabH_like This family is most closely related 99.87
cd03816415 GT1_ALG1_like This family is most closely related 99.87
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 99.87
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 99.87
cd03798377 GT1_wlbH_like This family is most closely related 99.86
cd03808359 GT1_cap1E_like This family is most closely related 99.86
cd03820348 GT1_amsD_like This family is most closely related 99.86
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 99.85
PLN02275371 transferase, transferring glycosyl groups 99.83
cd03806419 GT1_ALG11_like This family is most closely related 99.83
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 99.83
cd03813475 GT1_like_3 This family is most closely related to 99.8
cd03804351 GT1_wbaZ_like This family is most closely related 99.76
PHA01630331 putative group 1 glycosyl transferase 99.75
PHA01633335 putative glycosyl transferase group 1 99.75
PLN02949463 transferase, transferring glycosyl groups 99.75
TIGR02918500 accessory Sec system glycosylation protein GtfA. M 99.73
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 99.71
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 99.69
cd03788460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 99.69
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 99.68
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 99.67
cd04946407 GT1_AmsK_like This family is most closely related 99.66
cd04949372 GT1_gtfA_like This family is most closely related 99.63
TIGR02400456 trehalose_OtsA alpha,alpha-trehalose-phosphate syn 99.63
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 99.55
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 99.53
PRK13609380 diacylglycerol glucosyltransferase; Provisional 99.51
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 99.49
PLN02605382 monogalactosyldiacylglycerol synthase 99.48
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 99.47
PRK14501 726 putative bifunctional trehalose-6-phosphate syntha 99.44
PLN03063 797 alpha,alpha-trehalose-phosphate synthase (UDP-form 99.42
cd04950373 GT1_like_1 Glycosyltransferases catalyze the trans 99.31
PRK13608391 diacylglycerol glucosyltransferase; Provisional 99.27
TIGR02398487 gluc_glyc_Psyn glucosylglycerol-phosphate synthase 99.22
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 99.18
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 99.15
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 99.13
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 99.02
PLN03064 934 alpha,alpha-trehalose-phosphate synthase (UDP-form 98.88
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 98.87
KOG0853495 consensus Glycosyltransferase [Cell wall/membrane/ 98.77
COG0438381 RfaG Glycosyltransferase [Cell envelope biogenesis 98.75
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 98.68
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.58
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 98.57
PRK09814333 beta-1,6-galactofuranosyltransferase; Provisional 98.51
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 98.43
PRK14985 798 maltodextrin phosphorylase; Provisional 98.41
PRK14986 815 glycogen phosphorylase; Provisional 98.34
KOG3742 692 consensus Glycogen synthase [Carbohydrate transpor 98.27
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 98.25
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 98.24
PF00862550 Sucrose_synth: Sucrose synthase; InterPro: IPR0003 98.11
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 98.06
KOG1387465 consensus Glycosyltransferase [Cell wall/membrane/ 97.99
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 97.8
PF00982474 Glyco_transf_20: Glycosyltransferase family 20; In 97.77
PRK10117474 trehalose-6-phosphate synthase; Provisional 97.69
COG0380486 OtsA Trehalose-6-phosphate synthase [Carbohydrate 97.67
PLN02205 854 alpha,alpha-trehalose-phosphate synthase [UDP-form 97.54
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 97.21
KOG2941444 consensus Beta-1,4-mannosyltransferase [Posttransl 97.03
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.98
TIGR03713519 acc_sec_asp1 accessory Sec system protein Asp1. Th 96.81
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 96.79
PHA02562562 46 endonuclease subunit; Provisional 96.2
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.93
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.84
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.79
TIGR006061311 rad50 rad50. This family is based on the phylogeno 95.64
PRK02224880 chromosome segregation protein; Provisional 95.58
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.47
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.39
PRK11637428 AmiB activator; Provisional 95.27
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 95.17
PRK01021608 lpxB lipid-A-disaccharide synthase; Reviewed 95.15
PRK11637428 AmiB activator; Provisional 95.14
PF12000171 Glyco_trans_4_3: Gkycosyl transferase family 4 gro 95.13
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 95.04
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.99
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 94.9
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.84
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 94.69
PRK02224880 chromosome segregation protein; Provisional 94.42
TIGR006061311 rad50 rad50. This family is based on the phylogeno 94.37
PRK03918880 chromosome segregation protein; Provisional 94.36
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.29
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.18
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.12
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 94.1
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.06
PRK09039343 hypothetical protein; Validated 94.04
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 93.93
PHA02562562 46 endonuclease subunit; Provisional 93.9
TIGR02919438 accessory Sec system glycosyltransferase GtfB. Mem 93.89
PF15294278 Leu_zip: Leucine zipper 93.84
KOG4673961 consensus Transcription factor TMF, TATA element m 93.78
KOG09961293 consensus Structural maintenance of chromosome pro 93.4
PRK048631486 mukB cell division protein MukB; Provisional 93.38
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 93.32
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 93.22
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 93.18
COG11961163 Smc Chromosome segregation ATPases [Cell division 93.11
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.02
PF0828890 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP 92.84
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.78
PRK03918880 chromosome segregation protein; Provisional 92.71
COG5185622 HEC1 Protein involved in chromosome segregation, i 92.65
PRK09841726 cryptic autophosphorylating protein tyrosine kinas 92.64
PRK04863 1486 mukB cell division protein MukB; Provisional 92.6
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 92.58
PF01496759 V_ATPase_I: V-type ATPase 116kDa subunit family ; 92.56
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 92.53
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 92.43
COG4942420 Membrane-bound metallopeptidase [Cell division and 92.43
PF02684373 LpxB: Lipid-A-disaccharide synthetase; InterPro: I 92.41
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.38
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 92.2
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 92.18
KOG0977546 consensus Nuclear envelope protein lamin, intermed 91.93
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.77
PF14662193 CCDC155: Coiled-coil region of CCDC155 91.71
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 91.54
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 91.37
COG0763381 LpxB Lipid A disaccharide synthetase [Cell envelop 91.09
PRK04778569 septation ring formation regulator EzrA; Provision 91.04
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 91.01
TIGR03492396 conserved hypothetical protein. This protein famil 90.99
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 90.94
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 90.93
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 90.91
PLN02939977 transferase, transferring glycosyl groups 90.86
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 90.71
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.7
PRK09039343 hypothetical protein; Validated 90.6
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 90.58
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.54
KOG0971 1243 consensus Microtubule-associated protein dynactin 90.39
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 90.25
PF00038312 Filament: Intermediate filament protein; InterPro: 90.17
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 90.13
PRK01156895 chromosome segregation protein; Provisional 89.97
KOG0977546 consensus Nuclear envelope protein lamin, intermed 89.88
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 89.72
PF00038312 Filament: Intermediate filament protein; InterPro: 89.63
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.28
PF15397258 DUF4618: Domain of unknown function (DUF4618) 89.28
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 89.25
PRK11519719 tyrosine kinase; Provisional 89.17
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 89.09
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.78
PRK01156895 chromosome segregation protein; Provisional 88.78
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 88.69
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.64
KOG3156220 consensus Uncharacterized membrane protein [Functi 88.23
KOG00181141 consensus Structural maintenance of chromosome pro 88.09
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 88.06
KOG4673961 consensus Transcription factor TMF, TATA element m 87.82
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 87.81
PF06705247 SF-assemblin: SF-assemblin/beta giardin 87.73
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 87.3
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 87.3
PRK10361475 DNA recombination protein RmuC; Provisional 87.11
KOG10291118 consensus Endocytic adaptor protein intersectin [S 87.03
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 86.89
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 86.29
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 86.26
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 85.9
TIGR026801353 conserved hypothetical protein TIGR02680. Members 85.77
KOG09641200 consensus Structural maintenance of chromosome pro 85.7
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 85.62
PF04912388 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit 85.49
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 85.49
KOG0249 916 consensus LAR-interacting protein and related prot 85.35
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 85.13
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 85.06
KOG09331174 consensus Structural maintenance of chromosome pro 84.85
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 84.54
PRK10929 1109 putative mechanosensitive channel protein; Provisi 83.7
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 83.41
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 83.27
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.26
KOG0999772 consensus Microtubule-associated protein Bicaudal- 83.17
PF12761195 End3: Actin cytoskeleton-regulatory complex protei 82.61
cd07667240 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of 82.5
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 82.01
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 81.98
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 81.89
cd00176213 SPEC Spectrin repeats, found in several proteins i 81.68
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 81.59
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 81.37
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 81.35
KOG09961293 consensus Structural maintenance of chromosome pro 81.13
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 80.75
PRK10698222 phage shock protein PspA; Provisional 80.63
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 80.17
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 80.14
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 80.08
PF07426174 Dynactin_p22: Dynactin subunit p22; InterPro: IPR0 80.04
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 80.02
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=1.2e-160  Score=1399.61  Aligned_cols=691  Identities=72%  Similarity=1.140  Sum_probs=641.9

Q ss_pred             CcccchhhhhHHhhhhhhhHHHhHHHHHHHHHHHhhcccCcccchhhhhccCCCccchhcccCcccchhhHhhhhhhhhh
Q 004879            1 MRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTEN   80 (725)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (725)
                      |||||||+|+|+|+|+|+||+|||+|||||||||+++++++|+                     .+|+|++||++||+||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~  235 (977)
T PLN02939        177 MRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------------------CVHSLSKELDVLKEEN  235 (977)
T ss_pred             HHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc---------------------ccccHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999754                     5789999999999999


Q ss_pred             ccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 004879           81 LSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (725)
                      |+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+||+||++||  |||||||||+||++||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  313 (977)
T PLN02939        236 MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRAT  313 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             hhhhhHHHHhhhhHHHHHHHHHHHHhHhhhhhHHHhHHHHHhHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 004879          161 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ  240 (725)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      ||+|+|+++|+||||||+|||+||+||+|++|||+++++.    ++||||++++||||+++++||+|+++.|+++|++||
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (977)
T PLN02939        314 NQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQ  389 (977)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999966    999999999999999999999999999999999999


Q ss_pred             HHhhhhHHhhhhhccCCCCCCCChHHHHHHHHHHhhhhhcccCChHHHHHHHHHHHhhcCCchhhhhhhhhhchhhHHHH
Q 004879          241 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAIST  320 (725)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (725)
                      ++|++|++|+++++.++|+++|||+|||+||||||+|+|+++|+++||+.||+|||+|+.+++++|++|++++|+|++++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (977)
T PLN02939        390 DTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVEN  469 (977)
T ss_pred             HHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCC
Q 004879          321 FLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG  400 (725)
Q Consensus       321 ~~~~~~~~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g  400 (725)
                      |++|++++++++|||+|||+|++|++++||+|+|+.+|+++|+++||+|.||+|+|+++..+.+..++.....+..+|.|
T Consensus       470 ~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g  549 (977)
T PLN02939        470 FLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDG  549 (977)
T ss_pred             HHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999998654444444334445556777


Q ss_pred             cceeeeeEeeeeCCeeEEEeCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHHHcCCCceEEEECCCchhhHHHHHH
Q 004879          401 RLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW  480 (725)
Q Consensus       401 ~~~~~rV~~~~v~GI~V~~I~~~~ps~~F~r~~~Yg~~dd~~r~~~FsravlelL~~~~~kPDIIH~Hdw~sa~vapl~~  480 (725)
                      ..+.++||.+.++||++|||+++||+.||+|+.+||++||+.||+|||+++++++.+.+++|||||||||++++++|+|+
T Consensus       550 ~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~  629 (977)
T PLN02939        550 NLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYW  629 (977)
T ss_pred             ceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHH
Confidence            77778999999999999999987776699999999999999999999999999999888999999999999999989998


Q ss_pred             HhhccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHH
Q 004879          481 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV  560 (725)
Q Consensus       481 ~~ya~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev  560 (725)
                      ..|+..++.++|+|+||||+.|||.++...+..||++++.++++++++++ +++++|++++++.+||.||||||+|++++
T Consensus       630 ~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~EI  708 (977)
T PLN02939        630 DLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQEV  708 (977)
T ss_pred             HHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHHHH
Confidence            77766566789999999999999999887788899999888778888765 67899999999999999999999999999


Q ss_pred             HhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeec
Q 004879          561 RTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR  640 (725)
Q Consensus       561 ~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGR  640 (725)
                      .. .+|+||+.++..+..|+.+||||||++.|+|.+|++++.+|++++++||..+|.++|+++|++..+++.|+|+||||
T Consensus       709 ~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGR  787 (977)
T PLN02939        709 RS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITR  787 (977)
T ss_pred             HH-HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeec
Confidence            88 78899999999999999999999999999999999999999999999999999999999999843346799999999


Q ss_pred             CcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCcccc----cH----------------------HHHHHhcCeEEEcCCcc
Q 004879          641 LVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHI----QV----------------------YPILLSSFSFLRKHIFN  694 (725)
Q Consensus       641 L~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~l----e~----------------------~~iyAaADIfVlPS~~E  694 (725)
                      ++++||++++++|+..+.+.+++|+|+|+||.+.+    +.                      ..+|++||+||+||++|
T Consensus       788 L~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~E  867 (977)
T PLN02939        788 LVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFE  867 (977)
T ss_pred             CCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCcc
Confidence            99999999999999988777899999999975321    10                      16999999999999999


Q ss_pred             cchHHHHHHcCCCc-cccCCCCCceee
Q 004879          695 ICNLYIKLGQGGDL-TVNNNCEPWLHH  720 (725)
Q Consensus       695 pfGLv~LEAMg~~~-~V~~~~~G~l~~  720 (725)
                      |||+|++|||+++. ||...++|.-..
T Consensus       868 PfGLvqLEAMAyGtPPVVs~vGGL~Dt  894 (977)
T PLN02939        868 PCGLTQMIAMRYGSVPIVRKTGGLNDS  894 (977)
T ss_pred             CCcHHHHHHHHCCCCEEEecCCCCcce
Confidence            99999999996653 344555555433

>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02501 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Back     alignment and domain information
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2 Back     alignment and domain information
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK10117 trehalose-6-phosphate synthase; Provisional Back     alignment and domain information
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR02919 accessory Sec system glycosyltransferase GtfB Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03492 conserved hypothetical protein Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG3156 consensus Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3 Back     alignment and domain information
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 1e-29
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 1e-27
3d1j_A477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 3e-26
2qzs_A485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 4e-26
3cop_A485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 4e-26
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 3e-22
3fro_A439 Crystal Structure Of Pyrococcus Abyssi Glycogen Syn 7e-04
2bis_A440 Structure Of Glycogen Synthase From Pyrococcus Abys 7e-04
3l01_A428 Crystal Structure Of Monomeric Glycogen Synthase Fr 8e-04
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 459 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 518
           G +PD++H HDWQ A   P+Y        + S     T HN  +QG   A   +   L  
Sbjct: 128 GWRPDMVHAHDWQAAMT-PVYMRYAETPEIPS---LLTIHNIAFQGQFGANIFSKLALPA 183
Query: 519 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK 578
                   M+    ++ ++ LKG +  +  ++TVSPSYA+E+ T+E G GL   +   + 
Sbjct: 184 HAFG----MEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAH 239
Query: 579 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 638
              GI+NGID D WNPATD  +   Y+A +L+ +A NK+++ +H  +   D   PL   I
Sbjct: 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVI 297
Query: 639 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV 672
           +RL  QKG+ L+  A+   + LGG+ ++LG+  V
Sbjct: 298 SRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDV 331
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations Length = 439 Back     alignment and structure
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi Length = 440 Back     alignment and structure
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi Length = 428 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-139
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 1e-138
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 1e-115
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 4e-21
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 1e-18
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 2e-18
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-06
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 9e-14
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 1e-13
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 6e-13
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 1e-11
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 1e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 3e-08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 8e-08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-06
4dvy_P877 Cytotoxicity-associated immunodominant antigen; on 1e-05
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 2e-05
3haj_A486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 5e-05
2xs1_A704 Programmed cell death 6-interacting protein; prote 6e-05
4dvz_A569 Cytotoxicity-associated immunodominant antigen; on 6e-05
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 1e-04
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 2e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 5e-04
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
 Score =  418 bits (1076), Expect = e-139
 Identities = 96/345 (27%), Positives = 153/345 (44%), Gaps = 24/345 (6%)

Query: 333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDV 392
           + V+H+ +EM P+ K GGL DV+  L  A    G    ++LP +  ++          D 
Sbjct: 1   MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR------GVTDA 54

Query: 393 VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHH----PDKFFWRGQFYGEHDDFRRFSFFS 448
            V S  D       +      G+ +Y I+  H    P   +     +   D+  RF+   
Sbjct: 55  QVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLG 114

Query: 449 RAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA 506
               E+   L    +PD++H HDW              P     A+  FT HN  YQG  
Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP-----AKSVFTVHNLAYQGMF 169

Query: 507 PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGG 566
            A  +    L          ++    + +I+ LK  + +++ +T VSP+YA+E+   +  
Sbjct: 170 YAHHMNDIQLP-WSFFNIHGLEF---NGQISFLKAGLYYADHITAVSPTYAREITEPQFA 225

Query: 567 QGLHSTLNF--HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG 624
            G+   L       +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +G
Sbjct: 226 YGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMG 285

Query: 625 LSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGS 669
           L   D + PL   ++RL  QKG+ L+  A+   LE GGQ  LLG+
Sbjct: 286 L-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGA 329
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Length = 200 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} Length = 877 Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 Back     alignment and structure
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori} Length = 569 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query725
3vue_A536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 100.0
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 100.0
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 100.0
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.97
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 99.97
2r60_A499 Glycosyl transferase, group 1; rossmann-fold; 1.80 99.97
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 99.96
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 99.96
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 99.95
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 99.95
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 99.93
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 99.93
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.92
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.92
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 99.92
3oy2_A413 Glycosyltransferase B736L; rossmann fold, GDP-mann 99.91
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 99.88
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 99.87
2hy7_A406 Glucuronosyltransferase GUMK; glycosyltransferases 99.84
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 99.8
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.76
1uqt_A482 Alpha, alpha-trehalose-phosphate synthase; glycosy 99.75
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 99.68
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.63
3t5t_A496 Putative glycosyltransferase; GTB fold, pseudoglyc 99.57
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 99.54
1v4v_A376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 99.48
2xci_A374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 99.4
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 99.28
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 99.1
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 99.02
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.89
3ot5_A403 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.89
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 98.75
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 98.74
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 98.74
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 98.65
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 98.64
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 98.55
3rhz_A339 GTF3, nucleotide sugar synthetase-like protein; gl 98.52
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 98.41
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 98.38
4hwg_A385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 98.38
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 98.02
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 97.86
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 97.54
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 97.3
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.33
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.1
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.97
3q3e_A631 HMW1C-like glycosyltransferase; N-glycosylation; 2 94.78
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 94.31
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.3
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.28
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.99
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 91.9
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.44
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.16
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 88.9
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 88.64
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.26
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.8
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 87.52
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 87.25
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 86.77
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 86.2
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 84.06
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 82.5
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 82.38
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 81.11
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 81.09
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-58  Score=521.78  Aligned_cols=372  Identities=29%  Similarity=0.461  Sum_probs=288.5

Q ss_pred             CCCCCCeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeee
Q 004879          328 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKV  407 (725)
Q Consensus       328 ~~~~~MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV  407 (725)
                      .+.+.|||||+|+|++|++|+||+|+++.+|+++|+++||+|+||+|.|++.... .. .   .......+.+....+++
T Consensus         5 ~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~-~~-~---~~~~~~~~~~~~~~~~~   79 (536)
T 3vue_A            5 HHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDA-WD-T---SVVAEIKVADRYERVRF   79 (536)
T ss_dssp             ---CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTC-EE-E---EEEEEEEETTEEEEEEE
T ss_pred             cCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhh-cc-c---ceEEEEEecCceEEEEE
Confidence            3567899999999999999999999999999999999999999999999876431 10 0   01111112333445788


Q ss_pred             EeeeeCCeeEEEeCCCCCCccccc------CCCCC------CCchhhhHHHHHHHHHHHHHHcC-----------CCceE
Q 004879          408 WVSTIEGLPVYFIEPHHPDKFFWR------GQFYG------EHDDFRRFSFFSRAALELLLQAG-----------KQPDI  464 (725)
Q Consensus       408 ~~~~v~GI~V~~I~~~~ps~~F~r------~~~Yg------~~dd~~r~~~FsravlelL~~~~-----------~kPDI  464 (725)
                      |.....|+++|||+++.   ||.+      +.+|+      +.|+..||.+|+++++++++..+           +.|||
T Consensus        80 ~~~~~~gv~~y~id~~~---~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddI  156 (536)
T 3vue_A           80 FHCYKRGVDRVFIDHPS---FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVV  156 (536)
T ss_dssp             EECEETTEEEEEEECTT---TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEE
T ss_pred             EEEEECCceEEEecChh---hhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEE
Confidence            88888999999998643   5554      24565      46889999999999999877542           35789


Q ss_pred             EEECCCchhhHHHHHHHhhccCC-CCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcc---cccccccccchhhhh
Q 004879          465 IHCHDWQTAFVAPLYWDLYVPKG-LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINPLK  540 (725)
Q Consensus       465 IH~Hdw~sa~vapl~~~~ya~~g-l~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~---~l~d~~~~~~in~~k  540 (725)
                      +||||||+++++.++...+...+ +.++|+|+|+||+.++|.++...+..++++.......+   ......+...+|+++
T Consensus       157 iH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k  236 (536)
T 3vue_A          157 FVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMK  236 (536)
T ss_dssp             EEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHH
T ss_pred             EEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHH
Confidence            99999999998544434443222 35899999999999999887776666666543221111   111123567899999


Q ss_pred             hhhhhccEEEEeCHHHHHHHHhhccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCccc-ccchhhhHHHH
Q 004879          541 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESI  619 (725)
Q Consensus       541 ~ai~~AD~VitVS~~~a~ev~~~~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d-~~gK~~~K~aL  619 (725)
                      .++.+||.|+|||++|++++.+. ++.|+.........++.+|+||||++.|+|.+|+.++.+|+..+ +.+|..+|..+
T Consensus       237 ~~i~~ad~v~tVS~~~a~ei~~~-~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l  315 (536)
T 3vue_A          237 AGILEADRVLTVSPYYAEELISG-IARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEAL  315 (536)
T ss_dssp             HHHHHCSEEEESCHHHHHHHHTT-CCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHH
T ss_pred             HHHHhccEEEEcCHHHhhhhhcc-cccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHH
Confidence            99999999999999999998774 45554444445577899999999999999999999999998765 67999999999


Q ss_pred             HHHcCCCCCCCCCCEEEEeecCcCCCCHHHHHHHHHHhhcCCcEEEEEcCCCccc---ccH-------------------
Q 004879          620 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH---IQV-------------------  677 (725)
Q Consensus       620 Rk~lGL~~~d~~~plV~fVGRL~~qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~---le~-------------------  677 (725)
                      ++++|++. +++.|+|+||||++++||+++|++|++++.+.+.+|+|+|.|+...   ++.                   
T Consensus       316 ~~~~gl~~-d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  394 (536)
T 3vue_A          316 QAEAGLPV-DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPL  394 (536)
T ss_dssp             HHHTTSCC-CTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHH
T ss_pred             HHhcCCCC-CCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHH
Confidence            99999984 6789999999999999999999999999988899999999987442   110                   


Q ss_pred             -HHHHHhcCeEEEcCCcccchHHHHHHcCCCcc
Q 004879          678 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT  709 (725)
Q Consensus       678 -~~iyAaADIfVlPS~~EpfGLv~LEAMg~~~~  709 (725)
                       ..+|++||+||+||++||||++++|||+++.|
T Consensus       395 ~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~P  427 (536)
T 3vue_A          395 AHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTP  427 (536)
T ss_dssp             HHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCC
T ss_pred             HHHHHHhhheeecccccCCCCHHHHHHHHcCCC
Confidence             17999999999999999999999999954444
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 725
d1rzua_477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 5e-68
d2bisa1437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 1e-29
d2bfwa1196 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Py 3e-05
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  229 bits (584), Expect = 5e-68
 Identities = 105/390 (26%), Positives = 176/390 (45%), Gaps = 26/390 (6%)

Query: 334 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVV 393
           +V+ +++E+ P+ K GGL DVV  L  AL+  G     ++P Y  ++    D ++  +  
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFE-- 59

Query: 394 VESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYG------EHDDFRRFSFF 447
              + D    K  +     E L +  ++   P  +   G  Y         D+++RF+  
Sbjct: 60  ---FTDLLGEKADLLEVQHERLDLLILD--APAYYERSGGPYLGQTGKDYPDNWKRFAAL 114

Query: 448 SRAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGT 505
           S AA  +   +  G +PD++H HDWQ A           P+         T HN  +QG 
Sbjct: 115 SLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPE----IPSLLTIHNIAFQGQ 170

Query: 506 APAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG 565
             A   +   L          M+    ++ ++ LKG +  +  ++TVSPSYA+E+ T+E 
Sbjct: 171 FGANIFSKLALPAHAFG----MEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEF 226

Query: 566 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGL 625
           G GL   +   +    GI+NGID D WNPATD  +   Y+A +L+ +A NK+++ +H  +
Sbjct: 227 GMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI 286

Query: 626 SSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQVYPILLSSF 685
                  PL   I+RL  QKG+ L+  A+   + LGG+ ++LG+  V          S  
Sbjct: 287 DDDG--SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRH 344

Query: 686 S-FLRKHIFNICNLYIKLGQGGDLTVNNNC 714
              +   I     L   +  G D  +  + 
Sbjct: 345 HGRVGVAIGYNEPLSHLMQAGCDAIIIPSR 374
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query725
d1rzua_477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 100.0
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 100.0
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 99.91
d1uqta_456 Trehalose-6-phosphate synthase, OtsA {Escherichia 99.59
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.57
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 99.15
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 98.96
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 98.87
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 98.31
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 97.07
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 96.06
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 95.06
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 88.13
d2c1xa1450 UDP glucose:flavonoid 3-o-glucosyltransferase {Gra 80.41
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=6.7e-50  Score=441.64  Aligned_cols=361  Identities=28%  Similarity=0.471  Sum_probs=282.5

Q ss_pred             CeEEEEcCccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcceeeeeEeeee
Q 004879          333 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI  412 (725)
Q Consensus       333 MkILhIs~E~~P~~kvGGlg~vV~~LaraL~~~GHeV~VItP~y~~l~~~~v~~L~~l~~~i~~~f~g~~~~~rV~~~~v  412 (725)
                      |||+|||+||+|+.++||+|+++++|+++|+++||+|+||+|.|+++.......++.+     .++...-.+++++....
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   75 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCF-----EFTDLLGEKADLLEVQH   75 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEE-----EESCSSSCCEEEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEE-----EEeccCCceEEEEEEEE
Confidence            9999999999999889999999999999999999999999999987644221112111     11122222467777788


Q ss_pred             CCeeEEEeCCCCCCccccc-CCCC------CCCchhhhHHHHHHHHHHHHHHc--CCCceEEEECCCchhhHHHHHHHhh
Q 004879          413 EGLPVYFIEPHHPDKFFWR-GQFY------GEHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWDLY  483 (725)
Q Consensus       413 ~GI~V~~I~~~~ps~~F~r-~~~Y------g~~dd~~r~~~FsravlelL~~~--~~kPDIIH~Hdw~sa~vapl~~~~y  483 (725)
                      +|+++|+++++.   +|.+ +.+|      .+++++.++..|++++.++++..  +++|||||+|+|++++++ .++.. 
T Consensus        76 ~~v~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~-~~~~~-  150 (477)
T d1rzua_          76 ERLDLLILDAPA---YYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTP-VYMRY-  150 (477)
T ss_dssp             TTEEEEEEECHH---HHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHH-HHHHH-
T ss_pred             CCeeEEEecChh---hcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhcccCCCCCEEEecchhHHHHH-HHHHH-
Confidence            999999998532   3433 2222      23467788888999988887754  579999999999998874 44432 


Q ss_pred             ccCCCCCCcEEEEeeCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhhhhhhccEEEEeCHHHHHHHHhh
Q 004879          484 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS  563 (725)
Q Consensus       484 a~~gl~~ipiV~TiHn~~~qg~~p~~~l~~~Gl~~~~l~~~~~l~d~~~~~~in~~k~ai~~AD~VitVS~~~a~ev~~~  563 (725)
                      +  +..++|+|+|+|++.+.+.++...+..++.+.+.+..    .+..+...+++++.++..||.+++||+.+++++...
T Consensus       151 ~--~~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~  224 (477)
T d1rzua_         151 A--ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGM----EGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA  224 (477)
T ss_dssp             S--SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSST----TTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH
T ss_pred             h--hCCCCCEEEEEecccccccCCHHHHHHhhcchhhccc----ccccccchhHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence            2  2468999999999988887777766666665544321    111245567788889999999999999999987665


Q ss_pred             ccCCCcccccccCCCcEEEEeCCccCCCCCCCCcchhhhccCcccccchhhhHHHHHHHcCCCCCCCCCCEEEEeecCcC
Q 004879          564 EGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP  643 (725)
Q Consensus       564 ~~g~GL~~~l~~~~~Kv~vIpNGID~~~f~P~~d~~l~~~ys~~d~~gK~~~K~aLRk~lGL~~~d~~~plV~fVGRL~~  643 (725)
                      .++.+.+.+......++.+|+||+|.+.|+|..+..++.+++.+...++..++..++++.++++  ++.|+|+|+||+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~vgrl~~  302 (477)
T d1rzua_         225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDD--DGSPLFCVISRLTW  302 (477)
T ss_dssp             HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCC--SSSCEEEEESCBST
T ss_pred             hcCcchhhhhhhccccEEEEECCcchhhccccccccccccchhhhHHHhhhhHHHHHHhccccc--CCccEEEEEeeeee
Confidence            5555555555566789999999999999999999999999988888888889999999999973  57799999999999


Q ss_pred             CCCHHHHHHHHHHhhcCCcEEEEEcCCCccc---ccH--------------------HHHHHhcCeEEEcCCcccchHHH
Q 004879          644 QKGVHLIRHAIYRTLELGGQFILLGSSPVPH---IQV--------------------YPILLSSFSFLRKHIFNICNLYI  700 (725)
Q Consensus       644 qKGvdlLieA~~~L~~~~iqLVIvG~Gp~~~---le~--------------------~~iyAaADIfVlPS~~EpfGLv~  700 (725)
                      +||+++|++|++.+.+.+.+|+++|.|+...   +..                    ..+|++||+||+||++||||+|+
T Consensus       303 ~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fglv~  382 (477)
T d1rzua_         303 QKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQ  382 (477)
T ss_dssp             TTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHH
T ss_pred             cCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHHHHHhhcCCeEEEEcccChhHHHHHHHhCccccCCccccCCCHHH
Confidence            9999999999999988899999999997542   110                    17999999999999999999999


Q ss_pred             HHHcCCCcccc
Q 004879          701 KLGQGGDLTVN  711 (725)
Q Consensus       701 LEAMg~~~~V~  711 (725)
                      +|||+++.||+
T Consensus       383 lEAma~G~PvV  393 (477)
T d1rzua_         383 LYALRYGCIPV  393 (477)
T ss_dssp             HHHHHHTCEEE
T ss_pred             HHHHHcCCCEE
Confidence            99996666543
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Back     information, alignment and structure