Citrus Sinensis ID: 004881

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----

MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKKDQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK

ccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccc

cccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHccHHHHcccccccccHHccccccccccccHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccHHcHHEccccc

MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKKDQRDAAENEEENVElstrrnsengdiedmsleaifsedesdedegdvdvddsgsdgylsedsnclpiaeseihlgengaagkpsaqNQEILLELENKKKKLSrlkakdpgfskFLESHDKGLksfrnenaysdedersddgmqsmdedgphlYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHygaestgilgsgsgapmldcETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQdvasgfssdcFDLCLIKMYKAFIghckfaepaLFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHcihdydlqpLLYIIIQIINgmatlfpgprylplrcKCIEWLnhlssssgifipVTSLMLDVLEYKvskevgkpgkdfnfssavklpkhwlksrnfrEDCVFSAIELLSAHFAQWSyhisfpelatiplihlrkfqeksdVESLRRVVKRFIDVVEQNIEFVKKkrdevafspndqQSVEAFLQLEkcsgntpftqYYRSVMEKAASRSLIMNENKSFLEQKKQkrkrgqnivdvrangekvpekskvdqavsvkdgk

mgklgkkarkfakknlqsvlkrkrkikstfkkkaskkdqrdaaeneeenvelstrrnsengdiedMSLEAIFSedesdedegdvdVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKlsrlkakdpgfskfleshdkglksfrnenaysdedeRSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktvrPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRssnkakvsinNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEvgkpgkdfnfssavklpkhwlksRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRkfqeksdvesLRRVVKRFIDVVEQNIEFVkkkrdevafspNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSfleqkkqkrkrgqnivdvrangekvpekskvdqavsvkdgk

MgklgkkarkfakkNLQSVLkrkrkikstfkkkaskkDQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFsedesdedegdvdvddsgsdgYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQeillelenkkkklsrlkakDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHdydlqpllyiiiqiiNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK

*******************************************************************************************************************************************************************************************HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKR************VEAFLQLEKCSGNTPFTQYYRSV*********************************************************

****GKKARKFAKKNL***********************************************************************************************************************************FSKFLES*********************************************INSWCH*VKE*HNASAFISLLNAYRAACH*****************LDCETFCKILMFVLREADDVFREM**********************TVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD**********************VKL********NFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVK***************VEAFLQLEKCSGNTPFTQYYRSV*********************************************************

MGKLGKKARKFAKKNLQSVLKRKR********************************NSENGDIEDMSLEAIFS***************SGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAY***********QSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFL**********QNIVDVRANGE******************

*****KKARKFAKKNLQSVLKRKRKIKSTFKKK***************************************************************************************************NKKKKLSRLKAKDPGFSKFLESHDKGLKSFR****************************NKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFL***K*K*********************************

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MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKxxxxxxxxxxxxxxxxxxxxxxxxNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQxxxxxxxxxxxxxxxxxxxxxDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		725	2.2.26 [Sep-21-2011]
Q9ZPV5		764	Nucleolar complex protein	no	no	0.746	0.708	0.360	1e-108
Q8LNU5		757	Nucleolar complex protein	no	no	0.732	0.701	0.350	1e-92
Q3SYU1		746	Nucleolar complex protein	yes	no	0.787	0.765	0.262	5e-56
Q9Y3T9		749	Nucleolar complex protein	yes	no	0.739	0.715	0.271	3e-54
Q9WV70		747	Nucleolar complex protein	yes	no	0.726	0.705	0.267	5e-54
P39744		710	Nucleolar complex protein	yes	no	0.753	0.769	0.247	2e-42
Q9P7G0		707	Uncharacterized NOC2 fami	yes	no	0.787	0.807	0.232	6e-42
Q9VIF0		766	Nucleolar complex protein	yes	no	0.667	0.631	0.240	7e-41
O17580		715	Nucleolar complex protein	yes	no	0.358	0.363	0.253	7e-19
A8WTM7		719	Nucleolar complex protein	N/A	no	0.346	0.349	0.260	1e-18

>sp\|Q9ZPV5\|NOC2L_ARATH Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2	Back alignment and function desciption

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 327/571 (57%), Gaps = 30/571 (5%)

Query: 138 LSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDG----------P 187
           L RL+ KDP F ++++ HD  L  F       D D   D  ++  +++G           
Sbjct: 63  LKRLQEKDPDFFQYMKEHDAELLKFDATEIEDDADVEPDTDLEDTEKEGDDEATKMEIAK 122

Query: 188 HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLD 247
            +++ K +T+S +++W   ++++       S+L AYR ACHYG ++       +   ++ 
Sbjct: 123 KVHVQKTITASMVDAWSKSIEDEAKLGGVRSILRAYRTACHYGDDTGD--DQSTKFSVMS 180

Query: 248 CETFCKILMFVLREADDVFREMLGISSNCK--RDTILGLKNNSKWKTVRPLIKSYLRSTL 305
            E F KI+++VL E D + R++L    + +  ++TIL L N   WK    L+KSYL ++L
Sbjct: 181 SEVFNKIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWKNYNHLVKSYLGNSL 240

Query: 306 FMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQ 365
            +LNQ TD+E++ F+L RL+ S VF AAFP L+R+ IK+A+H W TG   +   S L L+
Sbjct: 241 HVLNQMTDTEMITFTLRRLKHSSVFLAAFPSLLRKYIKVALHFWGTGSGALPVVSLLFLR 300

Query: 366 DVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAK 425
           D+     SDC D C   MYKA++ +C+F      KH+ FL N F+EL   D+  +   A 
Sbjct: 301 DLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAF 360

Query: 426 VSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQI 485
           V I  L+ IL+  L TK KEA +K+  W++ +C++LW   +       +L+P+ Y + QI
Sbjct: 361 VFIRQLAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQI 420

Query: 486 INGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKP---- 541
           I G+A L P  RY PLR +C+  LN L++++G FIPV+ L++D+LE    KE+ +P    
Sbjct: 421 ITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEM---KELNRPPTGG 477

Query: 542 -GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLR 600
            GK  +  + +K+ K  +K+R F+E CV++ +E L  H +QWS  ++F EL+ IP I LR
Sbjct: 478 VGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLR 537

Query: 601 KFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTP 660
            F + +  E  R+ +K+ I  +E N EFV KKR  + F PND  + E+FL+ EK +G TP
Sbjct: 538 SFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTP 596

Query: 661 FTQYYRSVMEKAASRS-------LIMNENKS 684
             QY   + ++A  R+       +I+ EN +
Sbjct: 597 LLQYAEIIRQRAQQRNESLVESDVIVGENSA 627

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8LNU5\|NOC2L_ORYSJ Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=2 SV=1	Back alignment and function description

>sp\|Q3SYU1\|NOC2L_BOVIN Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1	Back alignment and function description

>sp\|Q9Y3T9\|NOC2L_HUMAN Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4	Back alignment and function description

>sp\|Q9WV70\|NOC2L_MOUSE Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2	Back alignment and function description

>sp\|P39744\|NOC2_YEAST Nucleolar complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC2 PE=1 SV=2	Back alignment and function description

>sp\|Q9P7G0\|YKY4_SCHPO Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1142.04 PE=1 SV=1	Back alignment and function description

>sp\|Q9VIF0\|NOC2L_DROME Nucleolar complex protein 2 homolog OS=Drosophila melanogaster GN=CG9246 PE=1 SV=1	Back alignment and function description

>sp\|O17580\|NOC2L_CAEEL Nucleolar complex protein 2 homolog OS=Caenorhabditis elegans GN=pro-2 PE=2 SV=2	Back alignment and function description

>sp\|A8WTM7\|NOC2L_CAEBR Nucleolar complex protein 2 homolog OS=Caenorhabditis briggsae GN=pro-2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		725
225449124		704	PREDICTED: nucleolar complex protein 2 h	0.96	0.988	0.651	0.0
296086056		710	unnamed protein product [Vitis vinifera]	0.931	0.950	0.669	0.0
449497671		722	PREDICTED: nucleolar complex protein 2 h	0.973	0.977	0.562	0.0
356565737		696	PREDICTED: nucleolar complex protein 2 h	0.922	0.961	0.585	0.0
224100835		624	predicted protein [Populus trichocarpa]	0.695	0.807	0.695	0.0
255577677		561	conserved hypothetical protein [Ricinus	0.732	0.946	0.658	0.0
449464502		634	PREDICTED: nucleolar complex protein 2 h	0.772	0.883	0.569	0.0
297816846		601	hypothetical protein ARALYDRAFT_485977 [	0.702	0.846	0.541	1e-164
7076794		606	putative protein [Arabidopsis thaliana]	0.700	0.838	0.539	1e-162
18410294		594	Noc2p family protein [Arabidopsis thalia	0.689	0.841	0.545	1e-162

>gi\|225449124\|ref\|XP_002274888.1\| PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera]	Back alignment and taxonomy information

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/714 (65%), Positives = 554/714 (77%), Gaps = 18/714 (2%)

Query: 1   MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKKDQRDAAENEEENVELSTRRNSEN 60
           MGKLGKKARKFAKKNLQSVLKRKRK+KS FKKK+S+ +Q  A +  ++   L   RN E 
Sbjct: 1   MGKLGKKARKFAKKNLQSVLKRKRKLKSMFKKKSSRGEQDAADDQLQDETNLLNGRNLEG 60

Query: 61  GDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIH--LGENGAAG 118
            DIE  SL++IFSED+SD     V  DDS SDG+LSEDS+C+ + ESE    L +NG   
Sbjct: 61  EDIEGTSLDSIFSEDDSD-----VAGDDSDSDGFLSEDSSCMYVPESENGNLLEDNGGGS 115

Query: 119 KPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDG 178
               QN+EI LEL  KKKKL RLK KDP FSKFLES+ KGL+  RN+  YSDEDE SD  
Sbjct: 116 ALLVQNREIHLELAKKKKKLDRLKEKDPEFSKFLESYHKGLEELRNDENYSDEDEESDLN 175

Query: 179 MQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGIL- 237
           MQSM+ED  +L + KLLT+SAI+SWC +V +QH+ SA  SLLN YRAACHYG  ST  L 
Sbjct: 176 MQSMNEDSLNLKIAKLLTNSAIDSWCKIVGDQHSISALPSLLNGYRAACHYGTSSTSTLD 235

Query: 238 GSGSGAPMLDCETFCKILMFVLREADDVFREMLGIS-SNCKRDTILGLKNNSKWKTVRPL 296
            + S   + + ETFC ILMF+L EAD++FR +LGIS S+C+++TIL LKN +KWK+++P+
Sbjct: 236 AAASSYSIQNSETFCNILMFMLCEADNIFRGLLGISCSSCRKETILDLKNTAKWKSLKPM 295

Query: 297 IKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETV 356
           +KSYLRSTLF+LNQ TDSEILAFSL RLR SI+FF  FP L+RRLIKIAVHLWATG  TV
Sbjct: 296 VKSYLRSTLFLLNQVTDSEILAFSLTRLRASIIFFTTFPSLLRRLIKIAVHLWATGGGTV 355

Query: 357 SFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQD 416
           S  +FLI+QDVA  FSSDCFD CLIK YKAFI H KF +P  +KH+QFLRNSFVELCS D
Sbjct: 356 SSCTFLIIQDVALIFSSDCFDTCLIKTYKAFIAHSKFVKPGFYKHIQFLRNSFVELCSLD 415

Query: 417 LLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQ 476
           + +SS KA VS+  L++ILQ GL+T+KKEA++KICSWQY NCIDLWV +IS  I D  LQ
Sbjct: 416 VEKSSKKALVSMQQLAKILQQGLRTRKKEAIEKICSWQYTNCIDLWVMFISANISDNSLQ 475

Query: 477 PLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSK 536
            LL++IIQIING+A LFP PRYLPLR K I+WLNHLSSSSG+FIPV SL+LD LEYK+ K
Sbjct: 476 HLLFMIIQIINGVAYLFPAPRYLPLRLKTIQWLNHLSSSSGVFIPVASLVLDTLEYKIGK 535

Query: 537 EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPL 596
           E G+PGK FN SSA+KLPKH LKSR F+E+C+ SAIELL+ HF QWSYHISFPELA+IPL
Sbjct: 536 ESGQPGKAFNMSSAIKLPKHCLKSRKFQEECILSAIELLTVHFGQWSYHISFPELASIPL 595

Query: 597 IHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEK-C 655
           I LRKF E + +E+LR VVKR ID VEQN+EFV+KKRDEVAFSPNDQQSVE+FLQLEK  
Sbjct: 596 IRLRKFHEIT-IENLRHVVKRLIDQVEQNVEFVQKKRDEVAFSPNDQQSVESFLQLEKGG 654

Query: 656 SGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKV 709
            GN PFTQYY S+MEKAASRSL+MNE        ++ RK G+    V   GE++
Sbjct: 655 GGNAPFTQYYNSIMEKAASRSLLMNEK---FPGSEKTRKMGK----VHDKGERL 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296086056\|emb\|CBI31497.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449497671\|ref\|XP_004160470.1\| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356565737\|ref\|XP_003551094.1\| PREDICTED: nucleolar complex protein 2 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|224100835\|ref\|XP_002312032.1\| predicted protein [Populus trichocarpa] gi\|222851852\|gb\|EEE89399.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255577677\|ref\|XP_002529715.1\| conserved hypothetical protein [Ricinus communis] gi\|223530817\|gb\|EEF32681.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449464502\|ref\|XP_004149968.1\| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297816846\|ref\|XP_002876306.1\| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata] gi\|297322144\|gb\|EFH52565.1\| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|7076794\|emb\|CAB75909.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18410294\|ref\|NP_567023.1\| Noc2p family protein [Arabidopsis thaliana] gi\|110741873\|dbj\|BAE98878.1\| hypothetical protein [Arabidopsis thaliana] gi\|332645873\|gb\|AEE79394.1\| Noc2p family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		725
TAIR\|locus:2100006		594	RBL "REBELOTE" [Arabidopsis th	0.689	0.841	0.523	1.4e-142
UNIPROTKB\|Q3SYU1		746	NOC2L "Nucleolar complex prote	0.765	0.743	0.255	1.2e-49
DICTYBASE\|DDB_G0284383		802	DDB_G0284383 "Nucleolar comple	0.544	0.492	0.280	3.3e-49
UNIPROTKB\|Q9Y3T9		749	NOC2L "Nucleolar complex prote	0.751	0.727	0.258	1.6e-48
UNIPROTKB\|F1NV71		764	NOC2L "Uncharacterized protein	0.753	0.714	0.250	9.1e-48
UNIPROTKB\|E9PTF3		644	Noc2l "Protein Noc2l" [Rattus	0.718	0.809	0.253	4e-42
RGD\|1309387		644	Noc2l "nucleolar complex assoc	0.718	0.809	0.253	8.4e-42
ASPGD\|ASPL0000053778		774	AN0946 [Emericella nidulans (t	0.768	0.719	0.245	2.5e-41
MGI\|MGI:1931051		747	Noc2l "nucleolar complex assoc	0.642	0.623	0.252	7.6e-41
UNIPROTKB\|G4MV71		799	MGG_08867 "Nucleolar complex p	0.733	0.665	0.240	6.5e-37

TAIR\|locus:2100006 RBL "REBELOTE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1360 (483.8 bits), Expect = 1.4e-142, Sum P(2) = 1.4e-142
 Identities = 264/504 (52%), Positives = 358/504 (71%)

Query:   169 SDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACH 228
             SD D   D+ +   D D   +   K+L+ S + + C +V ++    A + LLN YRAAC 
Sbjct:    86 SDSDGYLDELVNETDSD---IMKCKVLSRSFLATCCDMVDKEQYVPALVRLLNWYRAACQ 142

Query:   229 YGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNS 288
             YG E +GI        + D ETF K+++FVL++AD  FR +LG+S +  ++ IL LKNN 
Sbjct:   143 YGHEPSGIARPNIYYDIEDSETFAKVIIFVLQKADHTFRSILGLSDSSTKEKILKLKNNP 202

Query:   289 KWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL 348
             KW +++PL+KS+ RSTL ++ QA D EI++F+L +LR SIVF AAFP L+++LIKI+VHL
Sbjct:   203 KWDSLKPLVKSFFRSTLHLVKQAGDLEIISFTLTQLRVSIVFLAAFPDLLKKLIKISVHL 262

Query:   349 WATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNS 408
             W TGEET+S  +FLIL+D++  F+S+CFD CLI MYKAF+  C   + A  +   FLR+S
Sbjct:   263 WVTGEETISQQAFLILKDISMVFNSECFDSCLINMYKAFLHDCDIPK-ANSEQRPFLRDS 321

Query:   409 FVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISH 468
              VELCSQD+ +S  KA VSI  L+++L++ L TK KEAV+KI S +Y NC+DLWV +IS 
Sbjct:   322 LVELCSQDVQKSYTKASVSITQLAKLLKMALATKNKEAVEKIHSGEYINCVDLWVNFISA 381

Query:   469 CIHXXXXXXXXXXXXXXXNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD 528
              +                NG+A L  GPRYL LR KCI WLNHLS +SGIFIP+ SL+LD
Sbjct:   382 NVQDCDLQPLLYTIVQVINGVAQLIIGPRYLLLRVKCIHWLNHLSRTSGIFIPIASLVLD 441

Query:   529 VLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISF 588
             +LEYK + +  K  +     S VKLPK+WLKS+NF+E C+FS IELL+ HFAQWS+HISF
Sbjct:   442 MLEYKTTNDGEKQEQKLEAVSTVKLPKNWLKSQNFQEQCIFSVIELLAVHFAQWSFHISF 501

Query:   589 PELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEA 648
             P+LATIP++ L+KF E+S +E L+RVVKRFI+ VE NIEFV++KRD+V FSPNDQQS + 
Sbjct:   502 PDLATIPVMRLKKFHERSTMEGLKRVVKRFIEQVESNIEFVQRKRDDVTFSPNDQQSADT 561

Query:   649 FLQLEKCSGNTPFTQYYRSVMEKA 672
             F+QLEK + N P+TQYY+S+++KA
Sbjct:   562 FMQLEKQNANAPYTQYYQSIIDKA 585

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB\|Q3SYU1 NOC2L "Nucleolar complex protein 2 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284383 DDB_G0284383 "Nucleolar complex protein 2 homolog" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y3T9 NOC2L "Nucleolar complex protein 2 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NV71 NOC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTF3 Noc2l "Protein Noc2l" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1309387 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000053778 AN0946 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

MGI\|MGI:1931051 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MV71 MGG_08867 "Nucleolar complex protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		725
pfam03715		301	pfam03715, Noc2, Noc2p family	1e-107
COG5604		523	COG5604, COG5604, Uncharacterized conserved protei	5e-35

>gnl\|CDD\|217688 pfam03715, Noc2, Noc2p family	Back alignment and domain information

 Score =  329 bits (846), Expect = e-107
 Identities = 110/300 (36%), Positives = 169/300 (56%), Gaps = 5/300 (1%)

Query: 372 SSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNL 431
            SD  +  L  MY AF+ + KF  P     + F++NS  EL   D   S   A V I  L
Sbjct: 1   PSDLLETVLKGMYLAFVKNSKFTNPHTLPLINFMKNSAAELFGLDEEVSYQHAFVYIRQL 60

Query: 432 SRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYD--LQPLLYIIIQIINGM 489
           +  L+  L +K K+A K + +WQY + +D W   +S   +  +  L+PL+Y ++Q+I G+
Sbjct: 61  AIHLRNALNSKTKDAYKSVYNWQYIHSLDFWSRVLSAAANGSESPLRPLIYPLVQVILGV 120

Query: 490 ATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPG--KDFNF 547
             L P  RY PLR   I  L  LS S+G+FIP+  L+L+VLE     +  K    K F+F
Sbjct: 121 IRLIPTARYFPLRLHLIRSLIRLSRSTGVFIPLAPLLLEVLESAEFNKPPKKSTLKPFDF 180

Query: 548 SSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSD 607
           S  +KL K +L++R +++  +   +ELL+ + A WS  I+FPEL    +I L++F + S 
Sbjct: 181 SVTLKLSKAYLRTRVYQDGLIEQVVELLTEYLALWSKSIAFPELVLPVVIQLKRFLKSSK 240

Query: 608 VESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRS 667
                + +K+ ++ +EQN +F++KKR  V F PND+  VEAFL+  K    TP  +YY+S
Sbjct: 241 NAKFNKQLKQLLEKLEQNSKFIEKKRSNVDFGPNDRAEVEAFLKDLKWEK-TPLGKYYQS 299

At least one member, Noc2p from yeast, is required for a late step in 60S subunit export from the nucleus. It has also been shown to co-precipitate with Nug1p, a nuclear GTPase also required for ribosome nucleus export. This family was formerly known as UPF0120. Length = 301

>gnl\|CDD\|227891 COG5604, COG5604, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		725
KOG2256		661	consensus Predicted protein involved in nuclear ex	100.0
COG5604		523	Uncharacterized conserved protein [Function unknow	100.0
PF03715		299	Noc2: Noc2p family; InterPro: IPR005343 This is a	100.0
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	99.08
KOG2147		823	consensus Nucleolar protein involved in 40S riboso	97.59
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	97.54
KOG2256		661	consensus Predicted protein involved in nuclear ex	96.76
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	92.76
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.03
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.27
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	88.52
KOG2141		822	consensus Protein involved in high osmolarity sign	87.71
KOG0212		675	consensus Uncharacterized conserved protein [Funct	84.84
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	82.37

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=7e-155  Score=1286.06  Aligned_cols=554  Identities=38%  Similarity=0.617  Sum_probs=511.2

Q ss_pred             HHHHHHHHHhhcCChhhhHhhhhhCccccCCCCCCCCCcccccccc---cc-CCCCCCC----------CCcccCCcccH
Q 004881          132 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDD---GM-QSMDEDG----------PHLYLNKLLTS  197 (725)
Q Consensus       132 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~~~~~~d~de~~~d---e~-~~~~~~~----------~~~~~~~~lT~  197 (725)
                      ..|+++|++|+++||+||+||++||++||+|++ |+++|++.|++|   ++ .++++|.          .+...+++||.
T Consensus        66 ~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~d~~~~~~~~~~~~~~~~~k~it~  144 (661)
T KOG2256|consen   66 SKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEEDDEEDEIDKETDKKKNSGKVITV  144 (661)
T ss_pred             hhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccccccccccchhhhhhcccchhhhhcccchhhH
Confidence            789999999999999999999999999999996 444333322211   11 0111111          01124568999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC
Q 004881          198 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK  277 (725)
Q Consensus       198 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~~l~~k~~~~  277 (725)
                      .+|.+|++++...+++..+|++|+||||||+++.+++   .++.+|.|+|+++||+||.+||+++|.+|+++|+++..++
T Consensus       145 ~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~---~e~~ky~i~ds~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~  221 (661)
T KOG2256|consen  145 SNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDS---AEAPKYVITDSEAFNAVVIFCLQEMPDILRKLLRGKVDKD  221 (661)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHHHHhccccc---ccccceeechHHHHHHHHHHHHHHhHHHHHHHcCCCcCCC
Confidence            9999999999999999999999999999999998762   2578999999999999999999999999999999988654


Q ss_pred             CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhH
Q 004881          278 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVS  357 (725)
Q Consensus       278 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vr  357 (725)
                      +....  ....+|.++++++|||++++++||+++|++++++++|++++.++||+++||+++|.|+|++|++||||++++|
T Consensus       222 ~~~~~--~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~r  299 (661)
T KOG2256|consen  222 KSLFL--KTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLR  299 (661)
T ss_pred             ccccc--cccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchh
Confidence            44442  3334499999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 004881          358 FHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQL  437 (725)
Q Consensus       358 v~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRn  437 (725)
                      +.||+||+++|+.+.+.+++.|||+||.+||+||++|+++|||+||||+||++||||+|+..+|||||+|||||||||||
T Consensus       300 v~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRn  379 (661)
T KOG2256|consen  300 VLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRN  379 (661)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcccchhHhHHHHHHHHHc-ccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004881          438 GLQTKKKEAVKKICSWQYANCIDLWVTYIS-HCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS  516 (725)
Q Consensus       438 ai~~k~Kea~k~VYNWQfvhsL~~Ws~VLs-~~~~~s~L~pLiYPLVQVi~G~irLiPt~ryfPLRfh~ir~L~~Ls~~t  516 (725)
                      ||++++|++++.||||||||||+||++||| ++..+|+|+||+|||||||+||||||||+|||||||||||+|++||++|
T Consensus       380 am~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ss  459 (661)
T KOG2256|consen  380 AMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSS  459 (661)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999 8888899999999999999999999999999999999999999999999


Q ss_pred             CcceechhHHHHhhcccccc--CCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhH
Q 004881          517 GIFIPVTSLMLDVLEYKVSK--EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATI  594 (725)
Q Consensus       517 ~~fIPl~p~LleiL~s~~~K--~~~~~~k~~Df~~~lk~~k~~l~t~~~qd~v~~~~~eLL~e~l~~~s~sIaFPEl~~p  594 (725)
                      |+||||+|+|+|||.+...+  +++.+++|+||.++||||+.||+|+.||++|++++++||+|||++||+|||||||++|
T Consensus       460 g~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPELv~p  539 (661)
T KOG2256|consen  460 GTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPELVLP  539 (661)
T ss_pred             CceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHH
Confidence            99999999999999998754  3455679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q 004881          595 PLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAAS  674 (725)
Q Consensus       595 ~i~~LKr~~K~~k~~~~~~~lk~Li~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~~~~~~  674 (725)
                      +|++||+|+|.|++++|++.+++|+++|++|++||+++|..|+|+|+|.++|++|+++ ..|.+||||+||.+|++++++
T Consensus       540 ~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~~V~afe~~-~~~~~TPl~~yy~~~rk~~~~  618 (661)
T KOG2256|consen  540 VIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQAVSAFEQD-LDWNKTPLGQYYSSWRKVREE  618 (661)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995 679999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHH
Q 004881          675 RSLIMNENKSFLEQKKQK  692 (725)
Q Consensus       675 r~~~~~~~~~~~~~~~~~  692 (725)
                      ++++++|+.++.++++++
T Consensus       619 k~r~~~e~~~~~d~~~~~  636 (661)
T KOG2256|consen  619 KNRLAVESSEEDDKDKPK  636 (661)
T ss_pred             HHHHHhhhhhhhhhhhhh
Confidence            999999999998776655

>COG5604 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		725
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 76.0 bits (186), Expect = 3e-14
 Identities = 95/660 (14%), Positives = 205/660 (31%), Gaps = 178/660 (26%)

Query: 97  EDSNCLPIAESEIHLGENGAAGKPSAQNQEI--LLELENKKKKLSRLKAKDPGFSKFLES 154
           ++ +C  + +            K     +EI  ++  ++      RL      F   L  
Sbjct: 31  DNFDCKDVQDMP----------KSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSK 74

Query: 155 HDKGLKSFRNE----------NAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWC 204
            ++ ++ F  E          +    E  +     +   E       ++L   + + +  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKY 129

Query: 205 HLVKEQHNASAFISLLNAYRA---ACHYGAESTGILGSG-SGAPMLDCETFCKILMFVLR 260
           ++ + Q       +LL    A            G+LGSG +    +  +  C       +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKT---WVALDV-CLSYKVQCK 179

Query: 261 EADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFS 320
               +F   L    NC     +          +  L K   +      +++  S  +   
Sbjct: 180 MDFKIFWLNLK---NCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 321 LNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCL 380
           ++ ++  +          RRL+K   +           +  L+L +V +           
Sbjct: 227 IHSIQAEL----------RRLLKSKPYE----------NCLLVLLNVQNA---------- 256

Query: 381 IKMYKAFIGHCK------------FAEPALFKH--LQFLRNSFVELCSQDLLRSSNKAKV 426
            K + AF   CK            F   A   H  L     +      + LL        
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDC 313

Query: 427 SINNLSRI------LQLGL-QTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPL- 478
              +L R        +L +     ++ +    +W++ NC  L  T I   ++   L+P  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLN--VLEPAE 370

Query: 479 ---LYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLE-YKV 534
              ++  + +       FP   ++P     + W + + S          ++++ L  Y +
Sbjct: 371 YRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSL 416

Query: 535 SKEVGKPGK----DFNFSSAVKLPK----H--WLKSRNFREDCVFSAIELLSAHFAQWSY 584
            ++  K              VKL      H   +   N  +   F + +L+  +  Q+ Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFY 474

Query: 585 -HISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQ 643
            HI           HL+  +    +   R V   F+D       F+++K    + + N  
Sbjct: 475 SHIGH---------HLKNIEHPERMTLFRMV---FLD-----FRFLEQKIRHDSTAWNAS 517

Query: 644 QSVEAFLQ-LEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQK--RKRGQNIV 700
            S+   LQ L+          Y   + +       ++N    FL + ++     +  +++
Sbjct: 518 GSILNTLQQLKF---------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		725
2x19_B		963	Importin-13; nuclear transport, protein transport;	89.57
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	88.65
2x1g_F		971	Cadmus; transport protein, developmental protein,	84.14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	82.93
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	82.27
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	82.24

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

Probab=89.57  E-value=24  Score=41.52  Aligned_cols=132  Identities=9%  Similarity=0.098  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---
Q 004881          299 SYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS---  373 (725)
Q Consensus       299 syl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWst~~e~vrv~AFl~Lr~l~~~~~~---  373 (725)
                      .++..++..|.++.  ++.+-..++.-+..+..|+...+..+..++..++.....  ..|+..|-..+.++|...+.   
T Consensus       486 ~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~  563 (963)
T 2x19_B          486 DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP  563 (963)
T ss_dssp             SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777776776  355555666677777788888888888888888887754  67888888888999876543   


Q ss_pred             chHHHHHHHHHHHHHhhccccCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhh
Q 004881          374 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQ  440 (725)
Q Consensus       374 ~~le~~LK~~Y~ayv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRnai~  440 (725)
                      ++++.++..+...+-+.    ... .......-.|+.-+..--+   ...--.|+.+|.-.|.+.+.
T Consensus       564 p~~~~il~~l~~~l~~~----~~~-~~~~~~~~eai~~i~~~~~---~~~~~~~~~~l~~~l~~~l~  622 (963)
T 2x19_B          564 PYAANIVAVSQDVLMKQ----IHK-TSQCMWLMQALGFLLSALQ---VEEILKNLHSLISPYIQQLE  622 (963)
T ss_dssp             TTHHHHHHHHHHHHHTT----CSC-HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccC----CCC-hHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence            55666665554433211    111 1222233444444443211   33344567777666665554

PyMOL of 2x19

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00