Citrus Sinensis ID: 004885

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
Protein Sequence
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccEEEEccccEEEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccHHHHHHHHHccccccccEEccccccccHHHcccccccccccccccccccccccccccccccEEEcccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccccccccccEEEEEEccccccccccccEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEEcccccEEEcccccccccccccccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEccccEEEEEcccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHcccccHHHHHHHccccccccccEEEcccccHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEEccccEEEEcccHHccccccEEEEccccccEEEEEccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccHHEEcccccc
Coil and Loop (DISEMBL)
msqnnweadKMLDVYIYDYLLKRKLHASAKAFQtegkvstdpvaidapggfLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagvfkcqsgatqmrfqPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Flexible Loop (DISEMBL)
msqnnweadkMLDVYIYDYLLKRKLHASAKAFqtegkvstdpvAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDstqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Low Complexity Region (SEG)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREqqqqqqqqhqkpqqhqqmqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Disordered region (IsUnstruct)
*******ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART**********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL*****
Disordered Region (DISOPRED)
********DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFI*****************************************************************************GFAKAFTTKMYED*********************************************************************************************************NVTLKGWPLTGLDQFR********************************************MLH***************VGDLVST************************************************************SMTMDGSMSNTFQGNDQASKNQIGRKRK*****SGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ****
Disordered Region (DISEMBL)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKA********TDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQ*************************************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Disordered Region (DISPRO)
****NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQ***************A*********************LRPGFAKA*****YEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIG***SGQ******GVSQQVQSRSQQP*LSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLA****NDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQ*******************************************************************************************TPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	725	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.815	0.634	0.563	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.227	0.108	0.354	1e-17
Q15542	800	Transcription initiation	yes	no	0.226	0.205	0.331	2e-16
Q00808	1356	Vegetative incompatibilit	yes	no	0.223	0.119	0.321	3e-16
Q8C092	801	Transcription initiation	yes	no	0.226	0.204	0.325	5e-16
A2CEH0	490	POC1 centriolar protein h	no	no	0.224	0.332	0.307	5e-15
Q8W1K8	370	Protein Mut11 OS=Chlamydo	N/A	no	0.222	0.435	0.300	1e-14
P0CS42	433	Nuclear distribution prot	yes	no	0.217	0.364	0.318	1e-14
P0CS43	433	Nuclear distribution prot	N/A	no	0.217	0.364	0.318	1e-14
Q7ZVF0	416	POC1 centriolar protein h	no	no	0.220	0.384	0.319	2e-14

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/637 (56%), Positives = 455/637 (71%), Gaps = 46/637 (7%)

Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K   G
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GG 778

Query: 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           +TQ+RFQPR+G+ LAA+  N +++LDVETQ  R  LQ
Sbjct: 779 STQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQ 815

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 531  DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590
            D+  R  E+        FQ     TS V S  F+PDG +LA+G  DK   LW   S    
Sbjct: 1221 DQTVRLWEINSSKCLCTFQ---GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277

Query: 591  STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
             T + HT W+  V F+P  S LA+ S D+TVR+W+  +    L TF GH++ V S+ F P
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336

Query: 651  SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAA 701
                +L S  ++  +R WSI++G C   F   +     + F P  G ILA+ 
Sbjct: 1337 DGT-MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPD-GAILASG 1386

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 574 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 633

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           RF P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 691

Query: 664 EIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILD 710
            +  W I +G   G  K  +     +RF  R G ILA+ +++N + + D
Sbjct: 692 RVLLWDIGHGLMVGELKGHTDTVCSLRFS-RDGEILASGSMDNTVRLWD 739

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 3/165 (1%)

Query: 558  VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
            V S  FSPDG+ +A+G  DK   +W T S T   TLE H  W+  V FSP   R+A+ S 
Sbjct: 1012 VWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSD 1071

Query: 618  DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
            D T+++WD  +   + +T  GH  +V S+ F P  +  + S   +  I+ W   +G+C  
Sbjct: 1072 DHTIKIWDAVSGTCT-QTLEGHGDSVWSVAFSPDGQR-VASGSIDGTIKIWDAASGTCTQ 1129

Query: 678  VFKCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
              +   G    + F P   R+ + +I+  I I D  +  C   L+
Sbjct: 1130 TLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLE 1174

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 575 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 634

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           R+ P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 635 RYHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 692

Query: 664 EIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILD 710
            +  W I +G   G  K  +     +RF  R G ILA+ +++N + + D
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSLRFS-RDGEILASGSMDNTVRLWD 740

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|A2CEH0|POC1B_DANRE POC1 centriolar protein homolog B OS=Danio rerio GN=poc1b PE=2 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           E  +  A T+ V S HFS DG+ L T   DK   +W  E      +L  HT W+   RFS
Sbjct: 94  ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFS 153

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P    +A+   DRTVR+WDT +    +  FT +  +   +DF+ S   +  S  +N+ I+
Sbjct: 154 PDGRLIASCGDDRTVRLWDTSS-HQCINIFTDYGGSATFVDFNSSGTCIASSGADNT-IK 211

Query: 667 YWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDV 711
            W I        +K   +G     F P    +++ + ++ I ILD+
Sbjct: 212 IWDIRTNKLIQHYKVHNAGVNCFSFHPSGNYLISGSSDSTIKILDL 257

Required for ciliogenesis.

Danio rerio (taxid: 7955)

>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V +  FSPDG LLA+G  D+   LW   +    +TL  H+  ++DV ++P+   LAT
Sbjct: 40  TKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLAT 99

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           ++ D ++++WD E     LRT TGH+  V   +F  +   LL S   +  +R W + +G 
Sbjct: 100 AADDHSLKLWDAET-GACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGR 158

Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   T   F      ++ ++++  I + D +T  C
Sbjct: 159 CLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHC 201

Part of a complex involved in 'Lys-4' histone H3 methylation.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQ 721
           +   +       GR L +A  +  S I D  T   +++L+
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELR 271

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQ 721
           +   +       GR L +A  +  S I D  T   +++L+
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELR 271

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           E  L  A T  V S  FS DG+ L T   D+   LW      +  TL EH  W+   RFS
Sbjct: 94  ESVLFRAHTGSVRSVCFSADGQSLLTASDDQSIKLWSVHRQKIICTLREHNNWVRCARFS 153

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNS 663
           P    + + S DRTV++WD  +    + TF    G+S+ V   DFHPS   +  +  +N+
Sbjct: 154 PDGQLMVSVSDDRTVKLWDASSRQL-IHTFCEPGGYSSYV---DFHPSSTCIATASSDNT 209

Query: 664 EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 711
            +R W I   +    ++  S A   + F P    +L A+ ++ + ILD+
Sbjct: 210 -VRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDL 257

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
297738887	871	unnamed protein product [Vitis vinifera]	0.986	0.820	0.691	0.0
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.972	0.779	0.690	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.986	0.814	0.684	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.982	0.806	0.677	0.0
147784075	946	hypothetical protein VITISV_002025 [Viti	0.982	0.752	0.655	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.987	0.802	0.635	0.0
449441952	891	PREDICTED: transcriptional corepressor L	0.975	0.793	0.630	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.975	0.785	0.623	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.975	0.785	0.623	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.987	0.760	0.586	0.0

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/761 (69%), Positives = 586/761 (77%), Gaps = 46/761 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ  +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK+QQQQ Q  +        HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416

Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
           SSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476

Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
           NSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536

Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE 
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
           CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716

Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
              G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 717 --GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/746 (69%), Positives = 589/746 (78%), Gaps = 41/746 (5%)

Query: 9   DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
           D  LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4   DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63

Query: 69  EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
           EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q   Q QQ+ +Q+   Q+  Q+QQQQQ++  
Sbjct: 64  EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123

Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
                      D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182

Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
           K RL DNM+QLLDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242

Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
           ++K+E+   MNPRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299

Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
              PYNQL  QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357

Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
           VGS  Q+  P LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417

Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
           Q +KI+  GSM  DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477

Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
           SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537

Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
           DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597

Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
           D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657

Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695
           FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK   GA+Q+RFQP  G
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFG 715

Query: 696 RILAAAIENYISILDVETQVCRLKLQ 721
           R LAAA +N++SILDVETQVCRLKLQ
Sbjct: 716 RNLAAAADNFVSILDVETQVCRLKLQ 741

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/768 (68%), Positives = 585/768 (76%), Gaps = 53/768 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237

Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
            QQVQSR+QQ  +S+  ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297

Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
           LDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357

Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
             L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416

Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
            Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ 
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476

Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
           VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536

Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
           + TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
           STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716

Query: 674 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           SC  VFK   G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 717 SCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/776 (67%), Positives = 583/776 (75%), Gaps = 64/776 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q 
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413

Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
           Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473

Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
           SSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533

Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
            TSAPNQL          D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
           +E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713

Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           RYWSI NGSC  VFK   G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 714 RYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera]

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/802 (65%), Positives = 585/802 (72%), Gaps = 90/802 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
           DIFIARTNEKHSE+AASYIE                   +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61  DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120

Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
           Q QQ Q  Q   Q+  QQQQ Q ++                  D TQ LN +G+ L    
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180

Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
                 P  A    TKMYE+RLK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239

Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
           A+  QP GQTLHG   G+S   QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294

Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
           VHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354

Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
           SPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413

Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
                      +Q   QQ Q Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473

Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
           TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533

Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
           L HNG SSKSLLM+GSDGMG+ TSAPNQL               D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593

Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
           SFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653

Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
           VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGH
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGH 713

Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
           ST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK   G   MRFQPR GR LA
Sbjct: 714 STNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLA 771

Query: 700 AAIENYISILDVETQVCRLKLQ 721
           AA E  +SILDVETQ CR KLQ
Sbjct: 772 AAAEGVVSILDVETQACRQKLQ 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/781 (63%), Positives = 575/781 (73%), Gaps = 65/781 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ  +PQQ Q  Q    + Q   Q+ 
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120

Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
           QQQQ+                        RD    LN + + L   PG A A  TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180

Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
           RLK LP QRDSLDDA  K R  +NM QLLDPNHA +LK+AA   QPSGQ LHG  G +S 
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239

Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
           QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299

Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
            RSGLLQQQK   Q   P++QLQ+      QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357

Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
           RN+GL +DG SN VGD+VS VGS +Q   P  PRGD D+L+K++  Q Q Q         
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417

Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
                  H LS+QQSQ SN  + QQDK+  GG  S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477

Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
           RKQ  SSSGPANSSGTANT GP+PSS  S  + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537

Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
           DG G+LTS  NQL          D+DRFV+DGSLD+NVESFLS DD DPRD VGR  +V 
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597

Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDKK VLW T+S   K+TLEEH+  I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
           TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717

Query: 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720
            + EIRYWSINNGSCA V K   G TQMRFQPRLGR LAAA EN +SI DVETQVCR  L
Sbjct: 718 GDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSL 775

Query: 721 Q 721
           +
Sbjct: 776 K 776

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus]

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/777 (63%), Positives = 565/777 (72%), Gaps = 70/777 (9%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
           SSK L +MF SDG G+ TS  NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR  +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594

Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
             KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   K++LEEH  
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654

Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
            +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714

Query: 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715
           CD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I DVETQ 
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIFDVETQA 769

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/786 (62%), Positives = 565/786 (71%), Gaps = 79/786 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
           P K+D +CSCD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I 
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772

Query: 710 DVETQV 715
           DVETQ 
Sbjct: 773 DVETQA 778

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/786 (62%), Positives = 565/786 (71%), Gaps = 79/786 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
           P K+D +CSCD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I 
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772

Query: 710 DVETQV 715
           DVETQ 
Sbjct: 773 DVETQA 778

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/834 (58%), Positives = 570/834 (68%), Gaps = 118/834 (14%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKARE-----------------------------QQQ 91
           DIFIARTNEKHSE AASYIE+Q+IKARE                              QQ
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120

Query: 92  QQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
              Q+H + QQ QQ   QQ   Q    Q QQQQ RD T  LN + + L   P  A A  T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180

Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
           KMYE+RLK  P QRDSLDDA +K R  +NM QLLDPNHA++LK+AA G QPSGQ LHGT 
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239

Query: 210 -GVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
            G+S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG  N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299

Query: 269 TGLDQFRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
           TGL+Q RSGLLQQQK      QP++QLQ+      QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357

Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
           ML N+RN+GL +DG SN  GD++S VGS +    P  PRGD D+L+K++           
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417

Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKI-LAGGSMTMDGSMSNTFQGNDQ 421
                     Q Q    H LS+QQSQ SN  + QQDK+   GGS+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477

Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
                                                        SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537

Query: 438 SGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
           SGPANSSGTANT G    S+PS+PSTHTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597

Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
           S  NQL          D+DRFVDDGSLDDNVESFLS DD DPRD VGR  +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
              + AS+SK+  CHFS DGKLLA+GGHDKKAV+W  +S   K+ LEEH+  ITDVRFS 
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717

Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
           S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777

Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           WSINNGSC  V K   G TQMRFQPRLGR LAAA EN +SILDVETQ CR  L+
Sbjct: 778 WSINNGSCVRVSK--GGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLK 829

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
UNIPROTKB|H3BPK1	210	KATNB1 "Katanin p80 WD40 repea	0.227	0.785	0.321	3.7e-15
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.179	0.225	0.388	5.5e-15
UNIPROTKB|H3BPD8	208	KATNB1 "Katanin p80 WD40 repea	0.238	0.831	0.313	6.1e-15
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.201	0.193	0.350	1.2e-14
UNIPROTKB|F1S845	542	TAF5 "Uncharacterized protein"	0.2	0.267	0.346	2.2e-14
ZFIN|ZDB-GENE-040426-1993	416	poc1a "POC1 centriolar protein	0.220	0.384	0.319	2.4e-14
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.262	0.570	0.255	2.5e-14
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.212	0.459	0.280	2.6e-14
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.216	0.361	0.339	2.7e-14
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.219	0.199	0.327	4.5e-14

UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 55/171 (32%), Positives = 81/171 (47%)

Query:   544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
             T  + Q I A  S V S       G+LLATGG D +  LW         +L  HT  +  
Sbjct:     9 TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVES 68

Query:   603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
             VR +     +   S   ++RVWD E     LRT  GH   + SLDFHP  E  + S   +
Sbjct:    69 VRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQD 126

Query:   663 SEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY-ISILDV 711
             + I+ W I    C   ++  S A + +RF P  G+ LA+A +++ + + D+
Sbjct:   127 TNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPD-GKWLASAADDHTVKLWDL 176

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0010942 "positive regulation of cell death" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 222 (83.2 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 52/134 (38%), Positives = 70/134 (52%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FS D +LLA+   D    +W T + +++ TLE H  W+  V FS     LA++S 
Sbjct:   424 VRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSRLLASASD 483

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             DRTVR+WDTE   +   T  GHS+ V S+ F H S+  LL S  N+  +R W I   S  
Sbjct:   484 DRTVRIWDTEKGSHK-HTLEGHSSLVTSVSFSHDSR--LLASASNDQTVRIWDIEARSLQ 540

Query:   677 GVFKCQSGATQMRF 690
               F   +    MRF
Sbjct:   541 HTFDLDATIEAMRF 554

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H3BPD8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 58/185 (31%), Positives = 86/185 (46%)

Query:   530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588
             RDR  ++A V         + I A  S V S       G+LLATGG D +  LW      
Sbjct:     5 RDRCAQAAAVAA------VEEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPN 58

Query:   589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
                +L  HT  +  VR +     +   S   ++RVWD E     LRT  GH   + SLDF
Sbjct:    59 CIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDF 117

Query:   649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY-I 706
             HP  E  + S   ++ I+ W I    C   ++  S A + +RF P  G+ LA+A +++ +
Sbjct:   118 HPYGE-FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPD-GKWLASAADDHTV 175

Query:   707 SILDV 711
              + D+
Sbjct:   176 KLWDL 180

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 53/151 (35%), Positives = 80/151 (52%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +T  RF P+ + +AT S+DRTVR
Sbjct:   549 FSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVR 608

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +WD  N +  +R FTGH   + SL F P+ +  L S   +  +  W I +G      K  
Sbjct:   609 LWDVLNGN-CVRIFTGHKGPIHSLAFSPNGK-FLASGSTDGRVLLWDIGHGLMIAELKGH 666

Query:   683 SGATQ-MRFQPRLGRILAA-AIENYISILDV 711
             +G    ++F  R G I+A+ +I+N + + DV
Sbjct:   667 TGTIYALKFS-RDGEIIASGSIDNTVRLWDV 696

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 52/150 (34%), Positives = 77/150 (51%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   353 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 412

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   413 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 470

Query:   683 SGAT-QMRFQPRLGRILAA-AIENYISILD 710
             +     +RF  R G ILA+ +++N + + D
Sbjct:   471 TDTVCSLRFS-RDGEILASGSMDNTVRLWD 499

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1993 poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 54/169 (31%), Positives = 81/169 (47%)

Query:   547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             E  L  A T  V S  FS DG+ L T   D+   LW      +  TL EH  W+   RFS
Sbjct:    94 ESVLFRAHTGSVRSVCFSADGQSLLTASDDQSIKLWSVHRQKIICTLREHNNWVRCARFS 153

Query:   607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNS 663
             P    + + S DRTV++WD  +    + TF    G+S+ V   DFHPS   +  +  +N+
Sbjct:   154 PDGQLMVSVSDDRTVKLWDASSRQL-IHTFCEPGGYSSYV---DFHPSSTCIATASSDNT 209

Query:   664 EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 711
              +R W I   +    ++  S A   + F P    +L A+ ++ + ILD+
Sbjct:   210 -VRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDL 257

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 49/192 (25%), Positives = 88/192 (45%)

Query:   526 DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585
             +A+     G S  V     +   + +   T+ +    FS DG LLA+   DK  +LW   
Sbjct:    14 NANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73

Query:   586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
             ++++    E H+  I+D+ +S       ++S D T+R+WD  +P   L+   GH+  V  
Sbjct:    74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFC 133

Query:   646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIEN 704
             ++F+P   +L+ S   +  IR W +  G C  + K  S   + + F      I++A+ + 
Sbjct:   134 VNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDG 192

Query:   705 YISILDVETQVC 716
                I D +   C
Sbjct:   193 SCKIWDAKEGTC 204

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 44/157 (28%), Positives = 78/157 (49%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C  
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166

Query:   678 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET 713
             +    S   T + F      +++ + +  + I D  T
Sbjct:   167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTT 203

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 213 (80.0 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 55/162 (33%), Positives = 84/162 (51%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FSPDG+LLA+G  +K   LW + +  +K TL  H+ W+  + FSP    LA+ S 
Sbjct:   158 VLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLASGSN 217

Query:   618 DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             D T+++WD   P  SL+ T  GHS  + SL F P+ + LL S  +++ I+ W    GS  
Sbjct:   218 DATIKLWDP--PSGSLKHTLEGHSNKIESLAFSPNGQ-LLASGSSDATIKLWDTATGSFR 274

Query:   677 GVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQVCR 717
                K  S     + F P    + + + +N I + D  T + +
Sbjct:   275 HTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLWDPATGILK 316

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 216 (81.1 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 54/165 (32%), Positives = 85/165 (51%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSPD K L +   DK   LW  +++T   + + HTQ + DV+FSP      T+S D+T R
Sbjct:   525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +W T++  Y LR F GH   V  ++FHP+   +     + +  R W ++ G+C  VF   
Sbjct:   585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKT-CRMWDVHTGNCVRVFLGH 642

Query:   683 SGATQ-MRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQVSHS 725
             + +   +   P  GR LA+  E+  I + D+ +   RLK    H+
Sbjct:   643 TNSVNCLAVSPD-GRWLASGGEDGIICVWDIGSGR-RLKSMRGHA 685

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FUY2	LEUNG_ARATH	No assigned EC number	0.5635	0.8151	0.6348	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	725
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
pfam08513	27	pfam08513, LisH, LisH	8e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	8e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  130 bits (329), Expect = 1e-33
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 671 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCR 717
             G C    +  +       F P    + +++ +  I + D+ T  C 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  128 bits (325), Expect = 4e-33
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           TS V S  FSPDG++L++   DK   +W  E+    +TL  HT W+  V FSP  + +A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           SS D T+++WD       + T TGH+  V S+ F P  E LL S  + + I+ W ++ G 
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGK 210

Query: 675 CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           C G  +  ++G   + F P    + + + +  I + D+ T  C   L 
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  116 bits (292), Expect = 1e-28
 Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T  V S  FSPDG  +A+   D    LW   +    +TL  HT  +  V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP   +L +SS+D T+++WD       L T  GH   V S+ F P    LL S   + 
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDG 241

Query: 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701
            IR W +  G C        +  T + + P   R+ + +
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T +V S  FSPDG+ L +   D    LW   +     TL  H   +  V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP    LA+ S D T+RVWD    +  ++T +GH+ +V SL + P  +  L S   + 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKR-LASGSADG 283

Query: 664 EIRYWS 669
            IR W 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 96.3 bits (238), Expect = 6e-21
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
             S    + F P    + + + +  + + D+ T    
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-IS 707
                L     + + IR W +  G C        S  + + F P  GRIL+++  +  I 
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118

Query: 708 ILDVETQVCRLKLQ 721
           + DVET  C   L+
Sbjct: 119 VWDVETGKCLTTLR 132

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 4e-17
 Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 13/236 (5%)

Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 672 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQVSHS 725
            G         +   + + F P  G ++A+      I + D+ T          HS
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 662 NSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAA-AIENYISILDVETQVCR 717
           +  +R W +  G        +      + + F P    +++  + +  I + D+ T    
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 718 LKLQVSHS 725
             L+   +
Sbjct: 365 KTLEGHSN 372

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S V S  FSPDG+++++G  D    LW   + ++   L+ HT  +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 616 SADRTVRVWDTENPDYSL 633
           S+D T+R+WD +    S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 42.3 bits (101), Expect = 8e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
          + L+  IYDYL+K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
            ++L S   +  +  W +  G    V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 21/160 (13%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 599
           S++ V +  F  DG+  AT G +KK  ++  ES  +K   + H                W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            + ++     S++A+S+ +  V+VWD       +     H   V S+D+  +   LL S 
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594

Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
            ++  ++ WSIN G   G  K ++    ++F    GR LA
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634

Length = 793

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 690
             RT  GH+  V  + F P    LL +   +  I+ W +  G      K  +G    +  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 691 QPRLGRILAAAIENYISILDVETQVC 716
                 + + + +  I + D+ET  C
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGEC 85

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
            L+  I +YLL+     +A+  Q E  +S
Sbjct: 4  SELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%)

Query: 81  SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
           SQ         Q  QQ    QQ Q   + Q +     Q  QQQQ+    Q 
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622
           S D  LLA+G  D    LW         T++     I  V+F     R LA  SAD  V 
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVY 643

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            +D  NP   L T  GHS TV  + F  S   +  S DN   ++ W ++
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690

Length = 793

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 88  EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
           +Q Q  Q Q Q  QQ QQ Q QQ   Q    Q  Q    +  Q L D     R G     
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
                          RD+L  A
Sbjct: 685 GEAGEAA--------RDALGRA 698

Length = 820

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
           + Q  QQ QQ Q  QQ QQ Q  Q      A++QQ       +QR        + G+  R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692

Query: 141 PGFAKA 146
               +A
Sbjct: 693 DALGRA 698

Length = 820

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	725
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG0645	312	consensus WD40 repeat protein [General function pr	99.91
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
PTZ00421	493	coronin; Provisional	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.89
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.89
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0296	399	consensus Angio-associated migratory cell protein	99.88
PTZ00420	568	coronin; Provisional	99.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.88
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.87
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.86
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.85
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.85
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.85
KOG0296	399	consensus Angio-associated migratory cell protein	99.84
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.84
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.83
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.83
KOG0641	350	consensus WD40 repeat protein [General function pr	99.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.83
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.83
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.82
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.8
KOG1274	933	consensus WD40 repeat protein [General function pr	99.8
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.8
KOG0643	327	consensus Translation initiation factor 3, subunit	99.79
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.79
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.79
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG0641	350	consensus WD40 repeat protein [General function pr	99.78
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.78
KOG0646	476	consensus WD40 repeat protein [General function pr	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.77
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.77
KOG0267	825	consensus Microtubule severing protein katanin p80	99.77
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.76
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.76
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.75
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.74
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.73
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.73
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.72
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.72
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.71
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.71
KOG0639	705	consensus Transducin-like enhancer of split protei	99.71
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG1539	910	consensus WD repeat protein [General function pred	99.69
KOG0639	705	consensus Transducin-like enhancer of split protei	99.68
KOG1273	405	consensus WD40 repeat protein [General function pr	99.68
KOG0646	476	consensus WD40 repeat protein [General function pr	99.68
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.67
KOG2048	691	consensus WD40 repeat protein [General function pr	99.67
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.67
KOG2055	514	consensus WD40 repeat protein [General function pr	99.66
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.66
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.65
KOG2096	420	consensus WD40 repeat protein [General function pr	99.65
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.64
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.64
KOG1274	933	consensus WD40 repeat protein [General function pr	99.6
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.6
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.6
COG2319	466	FOG: WD40 repeat [General function prediction only	99.6
KOG1539	910	consensus WD repeat protein [General function pred	99.6
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.57
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.57
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.57
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.56
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.56
KOG4328	498	consensus WD40 protein [Function unknown]	99.56
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.56
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.55
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.54
KOG2048	691	consensus WD40 repeat protein [General function pr	99.54
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.54
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.53
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.53
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.5
KOG0649	325	consensus WD40 repeat protein [General function pr	99.5
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.49
KOG2055	514	consensus WD40 repeat protein [General function pr	99.48
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.48
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.46
PRK01742	429	tolB translocation protein TolB; Provisional	99.46
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.46
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.44
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.43
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.42
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.41
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.4
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.39
PRK11028	330	6-phosphogluconolactonase; Provisional	99.39
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.39
PRK01742	429	tolB translocation protein TolB; Provisional	99.39
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.37
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.35
KOG2139	445	consensus WD40 repeat protein [General function pr	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG4227	609	consensus WD40 repeat protein [General function pr	99.31
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.3
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.3
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.29
KOG1963	792	consensus WD40 repeat protein [General function pr	99.29
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.27
KOG1188	376	consensus WD40 repeat protein [General function pr	99.27
PRK05137	435	tolB translocation protein TolB; Provisional	99.27
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.25
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.24
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.24
KOG4227	609	consensus WD40 repeat protein [General function pr	99.24
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.23
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.22
PRK03629	429	tolB translocation protein TolB; Provisional	99.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.21
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.21
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.18
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.17
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.1
KOG2321	703	consensus WD40 repeat protein [General function pr	99.1
KOG1963	792	consensus WD40 repeat protein [General function pr	99.09
KOG2321	703	consensus WD40 repeat protein [General function pr	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.04
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.04
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.04
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.04
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
PRK04792	448	tolB translocation protein TolB; Provisional	99.01
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.01
KOG1334	559	consensus WD40 repeat protein [General function pr	99.0
KOG4547	541	consensus WD40 repeat-containing protein [General	98.96
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.94
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.9
KOG4547	541	consensus WD40 repeat-containing protein [General	98.9
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.88
KOG1334	559	consensus WD40 repeat protein [General function pr	98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.85
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.81
KOG2315	566	consensus Predicted translation initiation factor	98.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.8
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.79
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.69
PRK04043	419	tolB translocation protein TolB; Provisional	98.66
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.66
PRK04043	419	tolB translocation protein TolB; Provisional	98.59
KOG2315	566	consensus Predicted translation initiation factor	98.59
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.58
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.53
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.47
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.46
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.46
COG4946	668	Uncharacterized protein related to the periplasmic	98.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
COG4946	668	Uncharacterized protein related to the periplasmic	98.44
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.4
KOG2695	425	consensus WD40 repeat protein [General function pr	98.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.19
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.12
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.09
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.0
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.98
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.98
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.95
PRK02888	635	nitrous-oxide reductase; Validated	97.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.91
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
KOG2314	698	consensus Translation initiation factor 3, subunit	97.82
KOG2314	698	consensus Translation initiation factor 3, subunit	97.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.65
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.54
COG3391	381	Uncharacterized conserved protein [Function unknow	97.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.41
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.34
COG3391	381	Uncharacterized conserved protein [Function unknow	97.29
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.25
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.23
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.21
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.12
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.06
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.03
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
PRK02888	635	nitrous-oxide reductase; Validated	97.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.0
KOG3621	726	consensus WD40 repeat-containing protein [General	96.99
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.84
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.69
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.63
PRK13616	591	lipoprotein LpqB; Provisional	96.63
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.57
KOG3621	726	consensus WD40 repeat-containing protein [General	96.52
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.49
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.07
PHA02713	557	hypothetical protein; Provisional	95.93
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.89
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.74
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.66
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.63
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.61
KOG2444	238	consensus WD40 repeat protein [General function pr	95.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.58
PRK13616	591	lipoprotein LpqB; Provisional	95.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.45
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.4
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.29
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.25
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.0
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.93
PHA03098	534	kelch-like protein; Provisional	94.9
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.85
KOG2395	644	consensus Protein involved in vacuole import and d	94.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.69
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.68
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.57
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.56
KOG2444	238	consensus WD40 repeat protein [General function pr	94.54
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.37
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.3
PRK10115	686	protease 2; Provisional	94.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.96
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.94
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.88
PHA02790	480	Kelch-like protein; Provisional	93.81
COG5276	370	Uncharacterized conserved protein [Function unknow	93.64
PRK13684	334	Ycf48-like protein; Provisional	93.63
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.51
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.44
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.34
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.27
COG5167	776	VID27 Protein involved in vacuole import and degra	93.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.11
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.1
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.98
PHA02713	557	hypothetical protein; Provisional	92.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.19
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.13
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.93
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.64
PRK13684	334	Ycf48-like protein; Provisional	91.63
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.6
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.53
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.52
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.1
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.99
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.67
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.46
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.33
PHA03098	534	kelch-like protein; Provisional	90.11
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.58
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.5
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.43
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.36
PRK10350	145	hypothetical protein; Provisional	89.29
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.0
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.85
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.7
COG5276	370	Uncharacterized conserved protein [Function unknow	88.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.47
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.44
PRK10115	686	protease 2; Provisional	87.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.75
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.2
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.91
KOG2247	615	consensus WD40 repeat-containing protein [General	86.88
PHA02790	480	Kelch-like protein; Provisional	86.74
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.49
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.49
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.23
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	85.61
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.57
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	85.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.18
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	84.82
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.18
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.49
COG5167	776	VID27 Protein involved in vacuole import and degra	83.2
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	83.08
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.83
PLN02153	341	epithiospecifier protein	82.55
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	80.91
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.74
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.63

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-32  Score=285.94  Aligned_cols=215  Identities=26%  Similarity=0.336  Sum_probs=198.7

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...++++++.+.|+.++.               .+++||++|.+++|.++                   ....+.++++|
T Consensus       171 Q~gd~rPis~~~fS~ds~---------------~laT~swsG~~kvW~~~-------------------~~~~~~~l~gH  216 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSK---------------HLATGSWSGLVKVWSVP-------------------QCNLLQTLRGH  216 (459)
T ss_pred             hccCCCcceeeEeecCCC---------------eEEEeecCCceeEeecC-------------------CcceeEEEecc
Confidence            345677788888998887               89999999999999432                   33678899999


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ++.|.++.|+|.  +..+|||+.||+|++|++++..++..+++|...|..++|+|+|++|+|+++|.+-++||++++. .
T Consensus       217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-E  295 (459)
T KOG0272|consen  217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-E  295 (459)
T ss_pred             ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-h
Confidence            999999999996  5689999999999999999999999999999999999999999999999999999999999988 6


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      +....||...|.+|+|+|+|. ++++|+.|..-+|||+++|+|+-.+.+ ...|.+|.|+|+|..|++|+.|++++|||+
T Consensus       296 lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  296 LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence            788899999999999999998 889999999999999999999999986 577999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCC
Q 004885          712 ETQVCRLKLQVSHS  725 (725)
Q Consensus       712 ~tg~~v~~l~GH~s  725 (725)
                      +..++++++.+|.+
T Consensus       375 R~r~~ly~ipAH~n  388 (459)
T KOG0272|consen  375 RMRSELYTIPAHSN  388 (459)
T ss_pred             cccccceecccccc
Confidence            99999999999975

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.9e-31  Score=275.74  Aligned_cols=218  Identities=21%  Similarity=0.284  Sum_probs=197.4

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ....+...+.++.|+|..             .+.-+++|+.|++|++|....+                   .++..+.+
T Consensus       212 ~l~gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~~~e-------------------~~l~~l~g  259 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKLSQE-------------------TPLQDLEG  259 (459)
T ss_pred             EEeccccceeeEEEccCC-------------CccceeeeccCCceeeeccCCC-------------------cchhhhhc
Confidence            456677788899999953             2347899999999999943222                   56778899


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      |...|..++|+|+|++|+|+++|.+-++||++++..+...+||...|.+|+|+|||.+++||+.|..-||||++++. ++
T Consensus       260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i  338 (459)
T KOG0272|consen  260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI  338 (459)
T ss_pred             chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence            99999999999999999999999999999999999998999999999999999999999999999999999999999 89


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLGRILAAAIENYISILDV  711 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl  711 (725)
                      ..+.+|...|.+|+|+|+|- .++||+.|++++|||++..+++.++.. ..-|+.|+|+| .|.+|++++.|++++||.-
T Consensus       339 m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  339 MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             EEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            99999999999999999975 888999999999999999999888876 56699999999 6678888999999999999


Q ss_pred             CCCeEEEEEeCCCC
Q 004885          712 ETQVCRLKLQVSHS  725 (725)
Q Consensus       712 ~tg~~v~~l~GH~s  725 (725)
                      +++.++++|.||++
T Consensus       418 ~~~~~~ksLaGHe~  431 (459)
T KOG0272|consen  418 RTWSPLKSLAGHEG  431 (459)
T ss_pred             CCcccchhhcCCcc
Confidence            99999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=3.8e-29  Score=279.54  Aligned_cols=226  Identities=21%  Similarity=0.386  Sum_probs=193.0

Q ss_pred             cCCccCCCCcEEEEeeCCCcEEEecCCCCC--------CCCCcc---ccc-cccCCCceeeeEEEecCCCCCeEEEEEcC
Q 004885          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDA--------DPRDRV---GRS-AEVGKGFTFTEFQLIPASTSKVESCHFSP  565 (725)
Q Consensus       498 ~s~~~~~~~~~lasGs~D~~V~vw~s~~~~--------~~~~~~---~~~-~~~~~~~~~~~~~~l~~H~~~V~~i~fSp  565 (725)
                      .+..+.+...++|.|-.|..|++|......        ......   ..+ .+..+...-...+++.+|+++|+.+.|+|
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            333444445589999999999999665311        110000   000 11112222334556899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s  645 (725)
                      +.++|++||+|++||+|.+++..++..+++|..+|+++.|+|-|-||||++.|++.++|..+... +++.|.+|-+.|.|
T Consensus       462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV~c  540 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDVDC  540 (707)
T ss_pred             cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999877 89999999999999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.|+|+.. ++++|+.|.+||+||+.+|..++.|.+ .++|++++|+|+|++|++|+.|+.|.|||+.+++.+..+.||.
T Consensus       541 v~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht  619 (707)
T KOG0263|consen  541 VSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT  619 (707)
T ss_pred             EEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence            99999987 677999999999999999999999987 7889999999999999999999999999999999999999996


Q ss_pred             C
Q 004885          725 S  725 (725)
Q Consensus       725 s  725 (725)
                      +
T Consensus       620 ~  620 (707)
T KOG0263|consen  620 G  620 (707)
T ss_pred             C
Confidence            4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.4e-29  Score=259.40  Aligned_cols=211  Identities=26%  Similarity=0.379  Sum_probs=182.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               .+++|+-|.++|+|                   +-.+-.+..+.++|..
T Consensus       113 GH~e~Vl~~~fsp~g~---------------~l~tGsGD~TvR~W-------------------D~~TeTp~~t~KgH~~  158 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGS---------------RLVTGSGDTTVRLW-------------------DLDTETPLFTCKGHKN  158 (480)
T ss_pred             CCCCcEEEEEecCCCc---------------eEEecCCCceEEee-------------------ccCCCCcceeecCCcc
Confidence            3556788889999876               89999999999999                   3444467788999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCC
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsP-----d~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .|.|++|+|||+.||+|+.||+|++||.+++.. .+.|.+|...|++++|.|     ..++|++++.||.|+|||+..+.
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence            999999999999999999999999999988765 468999999999999987     46799999999999999999887


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe------------------------------
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------------  680 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~------------------------------  680 (725)
                       ++..+.+|+.+|+||+|--+|  ++++++.|++|++|+...|.+.+.++                              
T Consensus       239 -~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  239 -CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             -EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence             899999999999999997553  78899999999999886543221111                              


Q ss_pred             --------------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          681 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       681 --------------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                                                                        |..-|+.+.|+||++++++++.|..|++||
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                                              112378899999999999999999999999


Q ss_pred             CCCCeEEEEEeCCC
Q 004885          711 VETQVCRLKLQVSH  724 (725)
Q Consensus       711 l~tg~~v~~l~GH~  724 (725)
                      .++|+.+.+|+||-
T Consensus       396 g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  396 GRTGKFLASFRGHV  409 (480)
T ss_pred             CCCcchhhhhhhcc
Confidence            99999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=9e-29  Score=276.53  Aligned_cols=204  Identities=27%  Similarity=0.403  Sum_probs=188.0

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...++.++-...|+|+..               ||.++|.|++||+|                   .-.++..+..+++|
T Consensus       447 L~GH~GPVyg~sFsPd~r---------------fLlScSED~svRLW-------------------sl~t~s~~V~y~GH  492 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRR---------------FLLSCSEDSSVRLW-------------------SLDTWSCLVIYKGH  492 (707)
T ss_pred             eecCCCceeeeeeccccc---------------ceeeccCCcceeee-------------------ecccceeEEEecCC
Confidence            455666677777777665               99999999999999                   44566788889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ..+|.++.|+|.|-+|||||.|++.++|..+...+++.+.+|-+.|.|+.|||+..|++||+.|.+||+||+.++. .++
T Consensus       493 ~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VR  571 (707)
T KOG0263|consen  493 LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVR  571 (707)
T ss_pred             CcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 799


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      .|.||.++|.+|+|+|+|+ +|++|+.|+.|.|||+.+++.+..+.. .+.|.+|.|+.+|..|++++.|++|++||+..
T Consensus       572 iF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999998 778999999999999999999888775 67799999999999999999999999999875


Q ss_pred             C
Q 004885          714 Q  714 (725)
Q Consensus       714 g  714 (725)
                      -
T Consensus       651 ~  651 (707)
T KOG0263|consen  651 V  651 (707)
T ss_pred             h
Confidence            4

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-27  Score=240.40  Aligned_cols=226  Identities=25%  Similarity=0.368  Sum_probs=186.1

Q ss_pred             ccccCCCCCeeEEEEecCCC-ccc------------cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885          473 TLQHNGASSKSLLMFGSDGM-GSL------------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~-~~l------------a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~  539 (725)
                      .+..+.+++++.+.|..... ..+            .+....+.....|..++++|+.+++|+...+             
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------   95 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------------   95 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------
Confidence            34555666777777765433 111            1122223344458889999999999944332             


Q ss_pred             CCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCC--CCEEEEE
Q 004885          540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLATS  615 (725)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd--~~~Lasg  615 (725)
                            +....|.+|...|.+++|++|.+.|++|+.|++|++||+.... ..++..+  ++.|.|++|+|+  ..+|+++
T Consensus        96 ------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   96 ------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             ------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence                  5667889999999999999999999999999999999987544 3444333  789999999997  7899999


Q ss_pred             eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       616 s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      +.|++|++||+++-+ ....+.+|.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+.+...|.+++|+|+ +
T Consensus       169 s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn-r  245 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN-R  245 (315)
T ss_pred             cCCceEEEEccCCcc-hhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC-c
Confidence            999999999999987 6788999999999999999998 888999999999999999999999999999999999998 6


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.+++..+..|+|||++++.++..|+
T Consensus       246 ywL~~at~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  246 YWLCAATATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             eeEeeccCCceEEEeccchhhhhhcc
Confidence            66777777789999999999988775

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=4e-27  Score=237.44  Aligned_cols=207  Identities=18%  Similarity=0.301  Sum_probs=185.9

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .+...++++|+.|....+|......             ........+.+.+|++.+.||.|-+ ...|+|+|.|.+..+|
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d-------------~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalW  171 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRD-------------AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALW  171 (343)
T ss_pred             CCCCCeEEecCcCceeEEEeccccc-------------ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEE
Confidence            3445599999999999999544221             1122345667899999999999987 5578999999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      |++++..+..|.+|.+.|.+++++| +++.+++|+.|++.+|||++.+. ++.+|.+|...|++|+|.|+|. -|++|++
T Consensus       172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSD  249 (343)
T KOG0286|consen  172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSD  249 (343)
T ss_pred             EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCC
Confidence            9999999999999999999999999 89999999999999999999997 8999999999999999999987 6789999


Q ss_pred             CCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          662 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |+++|+||++....+..|.+   -.+|++++|+..|++|++|..|.++.|||.-.++.+-.|.||++
T Consensus       250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN  316 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN  316 (343)
T ss_pred             CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence            99999999999999988886   46799999999999999999999999999999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=8.7e-27  Score=263.40  Aligned_cols=216  Identities=26%  Similarity=0.450  Sum_probs=190.5

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      .....++.++.|+++|.               ++++++.|+.+++|......+                 .....+.+|.
T Consensus       156 ~~~~~sv~~~~fs~~g~---------------~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~  203 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGR---------------ALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHT  203 (456)
T ss_pred             ccccCceEEEEEcCCCC---------------eEEEccCCCcEEEeecccccc-----------------hhhccccccc
Confidence            33466778888998887               899999999999995522210                 2444558999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl-~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ..|++++|+|+++++++++.|++|+|||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||+++++ ++.
T Consensus       204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~  282 (456)
T KOG0266|consen  204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVR  282 (456)
T ss_pred             cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEE
Confidence            99999999999999999999999999999 5568999999999999999999999999999999999999999977 899


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec--CC-CeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC--QS-GATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~--~~-~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      .+.+|...|++++|++++. +|++++.|+.|+|||+.++.  ++..+..  .. .+++++|+|++.++++++.|+.|++|
T Consensus       283 ~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             eeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence            9999999999999999998 66677889999999999999  5566654  22 58999999999999999999999999


Q ss_pred             ECCCCeEEEEEeCCCC
Q 004885          710 DVETQVCRLKLQVSHS  725 (725)
Q Consensus       710 Dl~tg~~v~~l~GH~s  725 (725)
                      |+..+.++..+.+|.+
T Consensus       362 ~l~~~~~~~~~~~~~~  377 (456)
T KOG0266|consen  362 DLRSGKSVGTYTGHSN  377 (456)
T ss_pred             EccCCcceeeecccCC
Confidence            9999999999999964

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-27  Score=246.20  Aligned_cols=228  Identities=18%  Similarity=0.311  Sum_probs=193.0

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC-C--------------------------
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-R--------------------------  530 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~-~--------------------------  530 (725)
                      +.+=+.++.|+|||.               .+++|+.|+.|++|+...+... +                          
T Consensus       156 H~~WVlcvawsPDgk---------------~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~l  220 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGK---------------KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRL  220 (480)
T ss_pred             CccEEEEEEECCCcc---------------hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccce
Confidence            445577888888887               7888999999999975443211 0                          


Q ss_pred             -----CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE
Q 004885          531 -----DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  605 (725)
Q Consensus       531 -----~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf  605 (725)
                           +...++|+..   ...++.++.+|+..|+|++|--+ .+|++||.|++|++|+...+.+++++++|...|+.++.
T Consensus       221 as~skDg~vrIWd~~---~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  221 ASSSKDGSVRIWDTK---LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             ecccCCCCEEEEEcc---CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence                 1122333322   22567889999999999999633 48999999999999999999999999999999999988


Q ss_pred             c-----------CCC-------------------------CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885          606 S-----------PSL-------------------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (725)
Q Consensus       606 s-----------Pd~-------------------------~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs  649 (725)
                      +           |.+                         .+|++|+.|.++.+|+....+.++....+|...|..+.|+
T Consensus       297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS  376 (480)
T ss_pred             cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence            7           222                         3599999999999999987777899999999999999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ||++ ++++++-|..|++||.++|+.+.+|.+ -..|+.|+|+.|.+.|++|+.|.+++|||+++.+....|.||..
T Consensus       377 Pd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  377 PDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             CCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence            9998 778999999999999999999999995 67899999999999999999999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.8e-26  Score=244.79  Aligned_cols=210  Identities=19%  Similarity=0.347  Sum_probs=187.2

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ..+++++.|+.+|.               +|++|+.||.+++|...                    ...+.++.-|.++|
T Consensus       235 nkdVT~L~Wn~~G~---------------~LatG~~~G~~riw~~~--------------------G~l~~tl~~HkgPI  279 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGT---------------LLATGSEDGEARIWNKD--------------------GNLISTLGQHKGPI  279 (524)
T ss_pred             cCCcceEEecCCCC---------------eEEEeecCcEEEEEecC--------------------chhhhhhhccCCce
Confidence            34789999999998               99999999999999332                    23456778899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEeccCC
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHT  597 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------------------------------------~i~~l~~H~  597 (725)
                      +++.|+.+|.+|++++.|+++.+||..++.                                         ++.++.+|.
T Consensus       280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~  359 (524)
T KOG0273|consen  280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH  359 (524)
T ss_pred             EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence            999999999999999999999999985432                                         233456899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC--------CeEEEEEeCCCcEEEEE
Q 004885          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g--------~~llaSgs~Dg~I~IwD  669 (725)
                      +.|.+|.|.|.+.+|++|+.|++++||...... +...+.+|...|..+.|+|+|        ...+++++.|++|++||
T Consensus       360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             CceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            999999999999999999999999999998877 789999999999999999975        34678999999999999


Q ss_pred             CCCCeeEEEE-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          670 INNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       670 l~t~~~v~~~-~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +..+.++++| +|..+|.+++|+|+|+++++|+.||.|.||+.++++.++++.+-.
T Consensus       439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence            9999999999 678999999999999999999999999999999999999988753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=5.5e-26  Score=228.12  Aligned_cols=201  Identities=15%  Similarity=0.218  Sum_probs=178.4

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++.+++.|..+.+|....+              +......++.+++|+..|..+..++||++.++++.|+++++||+.+
T Consensus        29 ~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~   94 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT   94 (315)
T ss_pred             ceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC
Confidence            47889999999999966554              2223356788999999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--CCCeEEEEEccCC-CeEEEEEeCCC
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNNS  663 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~~~V~sl~fsP~g-~~llaSgs~Dg  663 (725)
                      ++....|.+|...|.+++|++|.+.|++|+.|++|++|++...  +..++..+  .+.|.||+|+|+. +-++++++.|+
T Consensus        95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk  172 (315)
T KOG0279|consen   95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK  172 (315)
T ss_pred             CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence            9999999999999999999999999999999999999999764  44554443  7899999999995 44888999999


Q ss_pred             cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +|++||+++.+....+.+ .+.++.+.++|||..+++|+.||.+.+||++.++++.++.+.
T Consensus       173 tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~  233 (315)
T KOG0279|consen  173 TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF  233 (315)
T ss_pred             eEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC
Confidence            999999999988888876 566999999999999999999999999999999999988764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9e-26  Score=233.29  Aligned_cols=230  Identities=20%  Similarity=0.323  Sum_probs=194.2

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCC--------------------------
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--------------------------  530 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~--------------------------  530 (725)
                      .+..+++.+.|+|+..               ++++++.|.+|++|+...+...+                          
T Consensus       106 g~r~~vt~v~~hp~~~---------------~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs  170 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEA---------------LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS  170 (406)
T ss_pred             ccccceeeeeeccCce---------------EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC
Confidence            3445566666666554               66777778888888655442211                          


Q ss_pred             CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC
Q 004885          531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  610 (725)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~  610 (725)
                      +.....|+..  ..++.++.+.+|...|.+++|-|.|.+|++|+.|.+|++|++.++.++.+|.+|...|..|+.+-||.
T Consensus       171 Dl~~~LWd~~--~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  171 DLSAKLWDFD--TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT  248 (406)
T ss_pred             ccchhheeHH--HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee
Confidence            1112222221  12456677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccC--------------CCeEEEEEeCCCcEEEEECCCCeeE
Q 004885          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCA  676 (725)
Q Consensus       611 ~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~--------------g~~llaSgs~Dg~I~IwDl~t~~~v  676 (725)
                      ++++|+.|-+|++|-+.++. |...+..|.-+|.+++|.|.              +..++++++.|++|++||+.++.|+
T Consensus       249 i~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL  327 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL  327 (406)
T ss_pred             EEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence            99999999999999999987 78899999999999999873              2247889999999999999999999


Q ss_pred             EEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          677 GVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       677 ~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .++.+ ..+|..++|+|.|+||+++..|++|+|||+++++|+++++.|.
T Consensus       328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence            99987 6789999999999999999999999999999999999999886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=2.1e-25  Score=220.68  Aligned_cols=177  Identities=18%  Similarity=0.337  Sum_probs=156.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      .++.++++|+..|+++.|.-+|+++++||+||+++|||++...+-+.+. |..+|++|..+|+-..|++|..+|.|+|||
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            3788999999999999999999999999999999999999977666665 779999999999999999999999999999


Q ss_pred             CCCCC------------------------------------------------eeeEEEecCCCCeEEEEEccCCCeEEE
Q 004885          626 TENPD------------------------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (725)
Q Consensus       626 l~~~~------------------------------------------------~~l~~~~~h~~~V~sl~fsP~g~~lla  657 (725)
                      +.+..                                                .++..|..|.+.+..+.++|+++ +|+
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~la  231 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLA  231 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEE
Confidence            86431                                                12445667889999999999988 778


Q ss_pred             EEeCCCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          658 SCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       658 Sgs~Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|+.|.+++||++++. +....+++ ...+..++|+.|+.||++++.|+.+++||++.++.++.+.||+
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            9999999999999987 45555555 5679999999999999999999999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=9.7e-25  Score=220.26  Aligned_cols=213  Identities=23%  Similarity=0.409  Sum_probs=191.5

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .....+...+.++.|++|..               .++++|.||++-+|                   +.++...++.++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr---------------~ivSaSqDGklIvW-------------------Ds~TtnK~haip   94 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSR---------------RIVSASQDGKLIVW-------------------DSFTTNKVHAIP   94 (343)
T ss_pred             EEecccccceeeeEecCCcC---------------eEEeeccCCeEEEE-------------------EcccccceeEEe
Confidence            34556777889999999886               88999999999999                   555556778888


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      -.+..|..|+|+|.|+++|+|+-|....||++.+.      ...+.+.+|++.+.|+.|-+ ...|+|++.|.++.+||+
T Consensus        95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI  173 (343)
T ss_pred             cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEc
Confidence            88899999999999999999999999999999754      45677899999999999987 567999999999999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCe
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      +++. .+..|.+|.+.|.+|++.|...+.|++|+.|+..++||++.+.|+.+|.+ ...|++|+|.|+|.-+++|+.|++
T Consensus       174 e~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  174 ETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             ccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence            9998 79999999999999999994444888999999999999999999999987 678999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEe
Q 004885          706 ISILDVETQVCRLKLQ  721 (725)
Q Consensus       706 V~IwDl~tg~~v~~l~  721 (725)
                      .++||++....+..|.
T Consensus       253 cRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYS  268 (343)
T ss_pred             eEEEeecCCcEEeeec
Confidence            9999999998887776

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.9e-25  Score=246.69  Aligned_cols=214  Identities=22%  Similarity=0.367  Sum_probs=187.0

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+..+.|++++.               ++++|+.|.+|++|...                  .....++++++|.
T Consensus       200 ~~h~~~v~~~~fs~d~~---------------~l~s~s~D~tiriwd~~------------------~~~~~~~~l~gH~  246 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGS---------------YLLSGSDDKTLRIWDLK------------------DDGRNLKTLKGHS  246 (456)
T ss_pred             cccccceeeeEECCCCc---------------EEEEecCCceEEEeecc------------------CCCeEEEEecCCC
Confidence            44666778888888776               99999999999999441                  2235778899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR  634 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~  634 (725)
                      ..|+||+|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|++++.+|++++.|+.|+|||+.++.. ++.
T Consensus       247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~  326 (456)
T KOG0266|consen  247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK  326 (456)
T ss_pred             CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874 356


Q ss_pred             EEecCCCC--eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C---CeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          635 TFTGHSTT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S---GATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       635 ~~~~h~~~--V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~---~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .+.++...  +++++|+|++.+ ++++..|+.|++||+..+.++..+..+ .   .+.+...++.+.++++++.|+.|++
T Consensus       327 ~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  327 LLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             cccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence            66666655  999999999995 457788999999999999999888762 2   3445556788899999999999999


Q ss_pred             EECCCCeEEEEEeCC
Q 004885          709 LDVETQVCRLKLQVS  723 (725)
Q Consensus       709 wDl~tg~~v~~l~GH  723 (725)
                      ||+.++..+..+.||
T Consensus       406 ~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  406 WDSSSGGILQRLEGH  420 (456)
T ss_pred             EeCCccchhhhhcCC
Confidence            999999999999999

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=1.8e-26  Score=241.11  Aligned_cols=208  Identities=22%  Similarity=0.430  Sum_probs=185.6

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      ..+..+.|.|+|.               -|.+|+..|.+.+|                   .+..+....++.+|...|+
T Consensus        97 c~V~~v~WtPeGR---------------RLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr  142 (464)
T KOG0284|consen   97 CPVNVVRWTPEGR---------------RLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVR  142 (464)
T ss_pred             cceeeEEEcCCCc---------------eeEeecccccEEEe-------------------cCceeeHHHHhhhhcccce
Confidence            3567888999886               67889999999999                   5566666677889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      ++.|++++.++++|+.+|.|++|+..-.. +..+..| ...|++++|+|++..|++|+.|++|+|||....+ ..+.+.+
T Consensus       143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~G  220 (464)
T KOG0284|consen  143 TMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRG  220 (464)
T ss_pred             eEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheecc
Confidence            99999999999999999999999975433 4444444 4999999999999999999999999999999887 6778899


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      |...|.+++|+|... ++++++.|..|++||.++++|+.++.. ...|..+.|.+++.+|++++.|..+++||+++-+.+
T Consensus       221 HgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  221 HGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             CCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            999999999999976 889999999999999999999998875 677999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q 004885          718 LKLQVSH  724 (725)
Q Consensus       718 ~~l~GH~  724 (725)
                      .+++||.
T Consensus       300 ~~~r~Hk  306 (464)
T KOG0284|consen  300 FTYRGHK  306 (464)
T ss_pred             HHhhcch
Confidence            9999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.8e-25  Score=215.46  Aligned_cols=210  Identities=19%  Similarity=0.267  Sum_probs=189.3

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+.+|.               |+.+++.|.+|++|+.                   .....++++.+|...
T Consensus        16 ~qgaV~avryN~dGn---------------Y~ltcGsdrtvrLWNp-------------------~rg~liktYsghG~E   61 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGN---------------YCLTCGSDRTVRLWNP-------------------LRGALIKTYSGHGHE   61 (307)
T ss_pred             cccceEEEEEccCCC---------------EEEEcCCCceEEeecc-------------------cccceeeeecCCCce
Confidence            445678888888887               9999999999999933                   333678899999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF  636 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~l~~~  636 (725)
                      |.+++.+.|...|++|+.|+.|.+||+.+++.++.|.+|.+.|+.|+|..+...+++|+.|.++++||.++.. .++..+
T Consensus        62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998754 367888


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      ......|.+|.....   .+++|+.||++|.||++.|.....+- ..+|++++|++++..+++++.|++|++.|-+||+.
T Consensus       142 dea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  142 DEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL  217 (307)
T ss_pred             hhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence            888889999998743   67799999999999999998776654 47899999999999999999999999999999999


Q ss_pred             EEEEeCCCC
Q 004885          717 RLKLQVSHS  725 (725)
Q Consensus       717 v~~l~GH~s  725 (725)
                      +..++||.+
T Consensus       218 L~sYkGhkn  226 (307)
T KOG0316|consen  218 LKSYKGHKN  226 (307)
T ss_pred             HHHhccccc
Confidence            999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.93  E-value=2.3e-24  Score=228.88  Aligned_cols=220  Identities=20%  Similarity=0.315  Sum_probs=185.8

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC-------CCccccccccC--------
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------RDRVGRSAEVG--------  540 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~-------~~~~~~~~~~~--------  540 (725)
                      ..+..++..+.|+-.|+               |+.+++.|+++.+|+...+...       ...+-..|-..        
T Consensus       273 ~~HkgPI~slKWnk~G~---------------yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t  337 (524)
T KOG0273|consen  273 GQHKGPIFSLKWNKKGT---------------YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST  337 (524)
T ss_pred             hccCCceEEEEEcCCCC---------------EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence            34555677777877776               9999999999999977544210       00000001000        


Q ss_pred             -------CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC----
Q 004885          541 -------KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL----  609 (725)
Q Consensus       541 -------~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~----  609 (725)
                             +--.-+++.++.+|.++|.++.|+|.+.+|++||.|++++||+.....+...+.+|+..|+.+.|+|.+    
T Consensus       338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence                   001124677888999999999999999999999999999999999999999999999999999999954    


Q ss_pred             -----CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC
Q 004885          610 -----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG  684 (725)
Q Consensus       610 -----~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~  684 (725)
                           ..+++++.|++|++||+..+. ++.+|..|..+|++|+|+|+|+ ++++|+.||.|.||++++++.++.+...+.
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~~~  495 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGTGG  495 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCCCe
Confidence                 468999999999999999988 8999999999999999999998 678999999999999999999999999899


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      |..++|+.+|.+|.++..|+.|+|.|++
T Consensus       496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  496 IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999999999986

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.8e-23  Score=235.49  Aligned_cols=221  Identities=15%  Similarity=0.171  Sum_probs=178.2

Q ss_pred             cccCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          474 LQHNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      +...+...+..+.|+| ++.               +|++|+.|++|++|........            ......+..+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~---------------~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~  122 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQ---------------KLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQ  122 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCC---------------EEEEEeCCCEEEEEecCCCccc------------cccCcceEEec
Confidence            3445667789999998 444               8999999999999976543110            01123466788


Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          553 ASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      +|...|.+|+|+|++ ++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++. 
T Consensus       123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-  201 (493)
T PTZ00421        123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-  201 (493)
T ss_pred             CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-
Confidence            999999999999975 699999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             eeEEEecCCCC-eEEEEEccCCCeEEEEE---eCCCcEEEEECCCCe-eEEEEec--CCCeEEEEEecCCCEEEEEE-cC
Q 004885          632 SLRTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAA-IE  703 (725)
Q Consensus       632 ~l~~~~~h~~~-V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~-~v~~~~~--~~~V~sv~fspdg~~Lla~s-~D  703 (725)
                      .+..+.+|.+. +..+.|.+++..++.+|   +.|+.|++||+++.. ++..+..  ...+..+.|++++..|++++ .|
T Consensus       202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD  281 (493)
T PTZ00421        202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE  281 (493)
T ss_pred             EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence            67888888765 45788999887666544   247899999998754 3433332  34566678999999988887 49


Q ss_pred             CeEEEEECCCCeEEEEEeC
Q 004885          704 NYISILDVETQVCRLKLQV  722 (725)
Q Consensus       704 g~V~IwDl~tg~~v~~l~G  722 (725)
                      +.|++||+++++++..+..
T Consensus       282 g~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        282 GNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             CeEEEEEeeCCceEEEeec
Confidence            9999999999988876654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=6.4e-25  Score=226.13  Aligned_cols=201  Identities=19%  Similarity=0.302  Sum_probs=179.7

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      ++.+.++++|+.|++|++|+..                   +.....++.+|...|..+++|+-..|+++|+.|+.|+.|
T Consensus       160 dP~n~wf~tgs~DrtikIwDla-------------------tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  160 DPGNEWFATGSADRTIKIWDLA-------------------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             CCCceeEEecCCCceeEEEEcc-------------------cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            4445699999999999999443                   335677889999999999999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D  662 (725)
                      |++..+.++.+.+|-..|+|++.+|..+.|+||+.|.++||||+++.. .+.++.||...|.+|.+.|... -+++|+.|
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D  298 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDP-QVITGSHD  298 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCC-ceEEecCC
Confidence            999999999999999999999999999999999999999999999988 7999999999999999999877 45699999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ++|++||++.|+...++.+ ...|.+++.+|.. ++++.++-..|+.|++-.|+.+..+.||.+
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~dnik~w~~p~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPDNIKQWKLPEGEFLQNLSGHNA  361 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCccceeccCCccchhhccccccc
Confidence            9999999999998888776 6679999999984 444555556799999999999999999863

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=1.5e-24  Score=223.42  Aligned_cols=181  Identities=22%  Similarity=0.403  Sum_probs=170.9

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      -..|+..+.+.+|.+.|.|+++.|...+|++|+.|++++|||+.++....++.+|...|..+++++-..|+++++.|+.|
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEE
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~  700 (725)
                      ++||++..+ .++.+.||-+.|.|++.+|.-+ ++++|+.|.++||||+++...+.++.+ ...|.+|.+.|-...+++|
T Consensus       218 KCwDLe~nk-vIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNK-VIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             EEEechhhh-hHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            999999988 7999999999999999999976 788999999999999999999999985 7889999999988999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEeCCC
Q 004885          701 AIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.|++|++||++.|+.+.++..|.
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hk  319 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHK  319 (460)
T ss_pred             cCCceEEEeeeccCceeEeeeccc
Confidence            999999999999999888887774

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=1.4e-24  Score=240.69  Aligned_cols=205  Identities=22%  Similarity=0.353  Sum_probs=178.6

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLW  582 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IW  582 (725)
                      ..+.++++||.|++|++|...++               ......+....+|+..|.+++++..+ .+|+++|.|+++++|
T Consensus       375 ~~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            44469999999999999965222               22334455667999999999998754 489999999999999


Q ss_pred             ECCCCeE-----E----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885          583 CTESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (725)
Q Consensus       583 dl~~~~~-----i----~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~  653 (725)
                      ++...+.     +    .+...|...|+|++++|+.++|+||+.|++.+||+++... ...++.+|...|++|.|+|...
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq  518 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ  518 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc
Confidence            9865221     1    1335799999999999999999999999999999999766 7899999999999999999966


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       654 ~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                       ++++|+.|++|+||.+.+++|+.+|++ ...|..+.|-.++..|++++.||.|+||++++++|+.+|.+|.+
T Consensus       519 -~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  519 -LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             -eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence             889999999999999999999999995 77899999999999999999999999999999999999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=9.1e-24  Score=213.99  Aligned_cols=212  Identities=17%  Similarity=0.295  Sum_probs=183.2

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+..+.|+|+|.               ++++|+.|..|.+|....+                  .+.+..+++|++
T Consensus        45 gh~geI~~~~F~P~gs---------------~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsg   91 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGS---------------CFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSG   91 (338)
T ss_pred             CCcceEEEEEECCCCC---------------eEeecCCcceEEEEecccc------------------ccceeeeccccc
Confidence            3445678889999887               9999999999999954332                  134556779999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      +|..+.|.+|++.|++|+.|++|+.||++++++++.+++|...|+.+.-+. .-.++.+++.|++++|||+++.. ++.+
T Consensus        92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t  170 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKT  170 (338)
T ss_pred             eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhc
Confidence            999999999999999999999999999999999999999999999988333 23467888999999999999877 6777


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      +. ....++++.|...+..++ +|+-|+.|++||++...++..+.+ ...|+.|..+++|.++++-+.|++|++||++..
T Consensus       171 ~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  171 FE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             cc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            64 346799999999888554 889999999999999999999987 678999999999999999999999999999864


Q ss_pred             ----eEEEEEeCCC
Q 004885          715 ----VCRLKLQVSH  724 (725)
Q Consensus       715 ----~~v~~l~GH~  724 (725)
                          +|+..|.||.
T Consensus       249 ~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  249 APSQRCVKIFQGHI  262 (338)
T ss_pred             CCCCceEEEeecch
Confidence                7899999884

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=2.3e-23  Score=231.13  Aligned_cols=213  Identities=20%  Similarity=0.345  Sum_probs=187.7

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+....+++.|+|||.               ++++|+.|++|++|+...+                   -++.++..|+
T Consensus       347 QgH~~~i~~l~YSpDgq---------------~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHt  392 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQ---------------LIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHT  392 (893)
T ss_pred             cccccceeeEEECCCCc---------------EEEeccCCCcEEEEeccCc-------------------eEEEEeccCC
Confidence            34566778888888887               9999999999999944333                   4678899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~Dg-tIrvWDl~~~~~~l  633 (725)
                      ..|+.+.|+..++.++++|-||+|+.||+...+..++|.... ....|++.+|.|..++.|+.|. .|.||++.++. .+
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-ll  471 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LL  471 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-ee
Confidence            999999999999999999999999999999999999887532 4467999999999999999887 69999999998 79


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ..+.||.++|.+++|+|.+. +|++++.|.+||+||+-. ...+.++.....+..+.|.|+|+.|++++.||.|.+||.+
T Consensus       472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            99999999999999999988 889999999999999864 3466777778899999999999999999999999999999


Q ss_pred             CCeEEEEEeCCC
Q 004885          713 TQVCRLKLQVSH  724 (725)
Q Consensus       713 tg~~v~~l~GH~  724 (725)
                      .+..+.++.|..
T Consensus       551 ~~~q~~~Idgrk  562 (893)
T KOG0291|consen  551 EAVQVGSIDGRK  562 (893)
T ss_pred             hceeeccccchh
Confidence            988887777643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=4.6e-25  Score=230.68  Aligned_cols=213  Identities=16%  Similarity=0.285  Sum_probs=186.6

Q ss_pred             cccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe
Q 004885          472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI  551 (725)
Q Consensus       472 ~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l  551 (725)
                      ..+..++...++++.|+.++.               ++++|..++.|++|.                    .....++.+
T Consensus       131 EtilQaHDs~Vr~m~ws~~g~---------------wmiSgD~gG~iKyWq--------------------pnmnnVk~~  175 (464)
T KOG0284|consen  131 ETILQAHDSPVRTMKWSHNGT---------------WMISGDKGGMIKYWQ--------------------PNMNNVKII  175 (464)
T ss_pred             HHHhhhhcccceeEEEccCCC---------------EEEEcCCCceEEecc--------------------cchhhhHHh
Confidence            356677888999999999887               999999999999992                    223445555


Q ss_pred             cCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          552 PAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       552 ~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .+|. ..|+|++|+|+...|++|+.|++|+|||....+....+.+|.-.|.+++|||...+|++++.|..|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            5655 899999999999999999999999999999988889999999999999999999999999999999999999998


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISI  708 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~I  708 (725)
                       |+.++.+|+..|..+.|+|+++ +|++++.|..+++||+++-+.+.+++. ...|+++.|+|-... |.+++.||.|..
T Consensus       256 -cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  256 -CLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             -hhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence             8999999999999999999996 777999999999999998888888884 778999999997665 556677999999


Q ss_pred             EECCCCeEEEEEe
Q 004885          709 LDVETQVCRLKLQ  721 (725)
Q Consensus       709 wDl~tg~~v~~l~  721 (725)
                      |.+...+.+-.++
T Consensus       334 ~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  334 WVVGLEEPLGEIP  346 (464)
T ss_pred             EeccccccccCCC
Confidence            9998555554443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.92  E-value=3e-25  Score=227.52  Aligned_cols=189  Identities=21%  Similarity=0.411  Sum_probs=168.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      .+++|..|.+|++|                   +..++..+..+.+|++.|.|+.|  |.+.|++|+.|.+|+|||+.++
T Consensus       209 kiVSGlrDnTikiW-------------------D~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIW-------------------DKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             hhhcccccCceEEe-------------------ccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC
Confidence            67899999999999                   44555677888999999999999  6789999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                      +++.++-.|...|..+.|+  ..+++||+.|.+|.|||+..+.  .+.+.+.||...|+.|.|+..   ++++++.|.+|
T Consensus       268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTi  342 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTI  342 (499)
T ss_pred             chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCceE
Confidence            9999999999999999997  4689999999999999998876  234667899999999999854   78899999999


Q ss_pred             EEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       666 ~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ++|++.++++++++.+ ..+|.|+.+  .++.+++|++|++|++||++.|.|++.++||+
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence            9999999999999986 566777765  46789999999999999999999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.3e-24  Score=232.60  Aligned_cols=201  Identities=22%  Similarity=0.381  Sum_probs=180.0

Q ss_pred             CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004885          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (725)
Q Consensus       499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~  578 (725)
                      ...+-....++++|+.|..|++|                   .-.+++.++.+++|.+.|+||+.+|.-.+++++|.|-+
T Consensus        60 a~kfiaRknWiv~GsDD~~IrVf-------------------nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~  120 (794)
T KOG0276|consen   60 AAKFIARKNWIVTGSDDMQIRVF-------------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMT  120 (794)
T ss_pred             hheeeeccceEEEecCCceEEEE-------------------ecccceeeEEeeccccceeeeeecCCCCeEEecCCccE
Confidence            33445556789999999999999                   44456789999999999999999999999999999999


Q ss_pred             EEEEECCC-CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC-eE
Q 004885          579 AVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DL  655 (725)
Q Consensus       579 V~IWdl~~-~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~-~l  655 (725)
                      |++||.+. ..+..+|++|+..|++|+|.| |.+.+++++-|++|+||.+..+. +..++.+|...|+||+|-+.|. -+
T Consensus       121 iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpy  199 (794)
T KOG0276|consen  121 IKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPY  199 (794)
T ss_pred             EEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcce
Confidence            99999976 678899999999999999999 67899999999999999999988 8999999999999999988653 26


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885          656 LCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~  719 (725)
                      +++|++|.+|+|||..+..|+.++++ ...|..++|+|.-..+++|+.||+|+||+..|.+...+
T Consensus       200 lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  200 LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence            77999999999999999999999996 66799999999999999999999999999888754443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1e-22  Score=204.01  Aligned_cols=202  Identities=23%  Similarity=0.393  Sum_probs=171.7

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVE  559 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~  559 (725)
                      .+..++|+|-.              +.++++|+.|+.|++|....                +.++.....+ .+|+..|+
T Consensus        16 r~W~~awhp~~--------------g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVR   65 (312)
T KOG0645|consen   16 RVWSVAWHPGK--------------GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVR   65 (312)
T ss_pred             cEEEEEeccCC--------------ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheee
Confidence            46778888841              23899999999999995432                1223444333 47999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEE
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRT  635 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~--~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~  635 (725)
                      .|+|+|.|++||+||+|.++.||.-.  +.+++.++++|...|.|++|+++|.+||||+.|+.|-||.+....  .++..
T Consensus        66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            99999999999999999999999765  367899999999999999999999999999999999999998433  47788


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---CCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~---t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      +.+|...|..+.|+|... +|++|+.|.+|++|+-.   ...|+.++.. ...|.+++|++.|..|++++.|++|+||-+
T Consensus       146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            999999999999999866 89999999999999876   3467788876 458999999999999999999999999985


Q ss_pred             CC
Q 004885          712 ET  713 (725)
Q Consensus       712 ~t  713 (725)
                      .+
T Consensus       225 ~~  226 (312)
T KOG0645|consen  225 YT  226 (312)
T ss_pred             cc
Confidence            53

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=1.3e-24  Score=220.91  Aligned_cols=216  Identities=22%  Similarity=0.308  Sum_probs=184.6

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      -+.+..|+|||.               |+++|+.||-|++|+...+.-.++...           .--..+--|..+|.|
T Consensus       215 h~EcA~FSPDgq---------------yLvsgSvDGFiEVWny~~GKlrKDLkY-----------QAqd~fMMmd~aVlc  268 (508)
T KOG0275|consen  215 HVECARFSPDGQ---------------YLVSGSVDGFIEVWNYTTGKLRKDLKY-----------QAQDNFMMMDDAVLC  268 (508)
T ss_pred             chhheeeCCCCc---------------eEeeccccceeeeehhccchhhhhhhh-----------hhhcceeecccceEE
Confidence            456778999998               999999999999997766643332222           222334457788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h  639 (725)
                      +.||.|...||+|+.||+|+||.+.++.|++.|. .|+..|+|+.|+.|+..+++++.|.++||.-+.+++ ++..|.+|
T Consensus       269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGH  347 (508)
T KOG0275|consen  269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGH  347 (508)
T ss_pred             EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCc
Confidence            9999999999999999999999999999999996 899999999999999999999999999999999998 89999999


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------------------------------------
Q 004885          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------------------------------------  681 (725)
Q Consensus       640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------------------------------------  681 (725)
                      .+.|+.+.|.++|.++ ++++.||+|+||+.++.+|+.+|+.                                      
T Consensus       348 sSyvn~a~ft~dG~~i-isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv  426 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHI-ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV  426 (508)
T ss_pred             cccccceEEcCCCCeE-EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence            9999999999999955 5999999999999998777655541                                      


Q ss_pred             ----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          682 ----------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       682 ----------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                                .+...+++.+|.|.++++.+.|+.++.|.+.+|+..+++.-|+
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence                      1223456788999999999999999999999999998888775

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=7.6e-24  Score=214.78  Aligned_cols=230  Identities=15%  Similarity=0.229  Sum_probs=187.9

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      .-++...+.+-.|++||.               ++++|+.|..|++++...--... ....+...........++++..|
T Consensus       108 lt~HK~~cR~aafs~DG~---------------lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH  171 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGS---------------LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDH  171 (430)
T ss_pred             EeecccceeeeeeCCCCc---------------EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhc
Confidence            344556778889999998               99999999999999554221110 11122222222334578899999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      .+.|+++.|+|...+|++|+.|++|++||+......   ++|. ...+|.+|.|||.|.+|++|..-.++++||+++.. 
T Consensus       172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q-  249 (430)
T KOG0640|consen  172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ-  249 (430)
T ss_pred             cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEecccee-
Confidence            999999999999999999999999999999754332   2332 35789999999999999999999999999999876 


Q ss_pred             eeEE---EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885          632 SLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       632 ~l~~---~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      |...   -..|.+.|++|.+++.++ ++++++.||.|++||--.++|+.++..   ...|.+..|..+++|+++.+.|..
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~  328 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST  328 (430)
T ss_pred             EeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence            3332   246889999999999988 888999999999999999999999974   556999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCC
Q 004885          706 ISILDVETQVCRLKLQVS  723 (725)
Q Consensus       706 V~IwDl~tg~~v~~l~GH  723 (725)
                      |++|.+.+++++.++.|.
T Consensus       329 vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  329 VKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eeeeeecCCceEEEEecC
Confidence            999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.2e-23  Score=233.23  Aligned_cols=229  Identities=23%  Similarity=0.334  Sum_probs=190.9

Q ss_pred             ccccCCCCCeeEEEEecCCCc----ccc--------ccCCc-cCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885          473 TLQHNGASSKSLLMFGSDGMG----SLT--------SAPNQ-LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~----~la--------~~s~~-~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~  539 (725)
                      .+..+++.+++++.|..+...    +++        +.... -.....|++++|.|+++++|..+...+...        
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------  449 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------  449 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------
Confidence            366778899999999653210    000        00011 134457999999999999997666322111        


Q ss_pred             CCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                        ...+....+...|...|+|++++|+.++|||||.|++++||+++......++.+|+..|.||.|+|.+..++|+|.|+
T Consensus       450 --~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  450 --PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             --cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence              122222334568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll  698 (725)
                      +|+||.+.+.. |+.+|.||...|..+.|-.++. .|++|+.||.|++|+++++.|+.++.. ...|.+++.++....++
T Consensus       528 TvKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  528 TVKIWSISTFS-CLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             eEEEEEeccce-eeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence            99999999988 9999999999999999999988 666999999999999999999999986 77899999999999999


Q ss_pred             EEEcCCeEEEEECCC
Q 004885          699 AAAIENYISILDVET  713 (725)
Q Consensus       699 a~s~Dg~V~IwDl~t  713 (725)
                      +|+.||.|.+|.=.|
T Consensus       606 tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  606 TGGGDGRIIFWKDVT  620 (775)
T ss_pred             ecCCCeEEEEeecCc
Confidence            999999999996433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-23  Score=236.73  Aligned_cols=229  Identities=16%  Similarity=0.216  Sum_probs=184.5

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC---------------------------
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP---------------------------  529 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~---------------------------  529 (725)
                      .+...+.++.|++||.               |||+|+.|+.|+||...+.+..                           
T Consensus       265 ah~gaIw~mKFS~DGK---------------yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~  329 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGK---------------YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE  329 (712)
T ss_pred             ccCCcEEEEEeCCCCc---------------eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence            5667889999999998               9999999999999976651100                           


Q ss_pred             -----CCcc--------c-cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 004885          530 -----RDRV--------G-RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE  595 (725)
Q Consensus       530 -----~~~~--------~-~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~  595 (725)
                           +...        . ......-.+.-++++.++||.+.|.+|.||. ..+|+++|.|++|++|++...+|+++|. 
T Consensus       330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-  407 (712)
T KOG0283|consen  330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-  407 (712)
T ss_pred             ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-
Confidence                 0000        0 0000011233456788999999999999995 5689999999999999999999999996 


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885          596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (725)
Q Consensus       596 H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~  674 (725)
                      |...|+||+|+| |.+||++|+-|+.||||++....  +........-|++++|.|+|. ..+.|+.+|.+++|+.+..+
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe
Confidence            999999999999 78999999999999999998766  444444447899999999998 55689999999999999877


Q ss_pred             eEEEEec---------CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          675 CAGVFKC---------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       675 ~v~~~~~---------~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .+..+..         +..|+.+.|.|... .|++++.|..|+|||+++-.+++.|+|+++
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n  545 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN  545 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence            6655431         23699999987543 588999999999999999999999998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.91  E-value=1.2e-23  Score=213.19  Aligned_cols=179  Identities=24%  Similarity=0.435  Sum_probs=167.0

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      .++..+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+-..++++|+++|+.+.|.+|+..|++++.|++|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3455678999999999999999999999999999999964 355667889999999999999999999999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      |+++++ +++.+++|...|.+++-+..|..++++++.|+++++||+++..++.+++....++++.|...+..+++|+-|+
T Consensus       118 D~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  118 DAETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ecccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            999998 8999999999999999777888899999999999999999999999998888999999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEeCCCC
Q 004885          705 YISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .|++||++.+.+.+.+.||..
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~D  217 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHAD  217 (338)
T ss_pred             ceeeeccccCcceEEeecccC
Confidence            999999999999999999963

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.6e-23  Score=228.17  Aligned_cols=214  Identities=20%  Similarity=0.305  Sum_probs=193.9

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      .+..+.++.|+|...               ++.++=..|.|.+|+.                   .+-..++.+.-..-+
T Consensus        12 rSdRVKsVd~HPteP---------------w~la~LynG~V~IWny-------------------etqtmVksfeV~~~P   57 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEP---------------WILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVP   57 (794)
T ss_pred             cCCceeeeecCCCCc---------------eEEEeeecCeeEEEec-------------------ccceeeeeeeecccc
Confidence            555667777777665               8888889999999933                   333566677777788


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      |+++.|-...+++++|+.|..|+||+..+++.+..|+.|...|.||+.||...+++|++.|-+|++||.++.-.|..+|.
T Consensus        58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe  137 (794)
T KOG0276|consen   58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE  137 (794)
T ss_pred             hhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence            99999999899999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCC
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQ  714 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg--~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ||...|++|+|.|.....|++|+-|++|+||.+....+..++++ ..+|++|+|-+.|  .+|++|+.|.+|+|||..|.
T Consensus       138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            99999999999999999999999999999999999999999986 6789999998764  49999999999999999999


Q ss_pred             eEEEEEeCCCC
Q 004885          715 VCRLKLQVSHS  725 (725)
Q Consensus       715 ~~v~~l~GH~s  725 (725)
                      .|+.+|+||..
T Consensus       218 ~CV~TLeGHt~  228 (794)
T KOG0276|consen  218 SCVQTLEGHTN  228 (794)
T ss_pred             HHHHHhhcccc
Confidence            99999999963

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=3.4e-22  Score=204.04  Aligned_cols=212  Identities=27%  Similarity=0.480  Sum_probs=184.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|++++.               ++++++.|+.|.+|.....                   .....+..|..
T Consensus         7 ~h~~~i~~~~~~~~~~---------------~l~~~~~~g~i~i~~~~~~-------------------~~~~~~~~~~~   52 (289)
T cd00200           7 GHTGGVTCVAFSPDGK---------------LLATGSGDGTIKVWDLETG-------------------ELLRTLKGHTG   52 (289)
T ss_pred             ccCCCEEEEEEcCCCC---------------EEEEeecCcEEEEEEeeCC-------------------CcEEEEecCCc
Confidence            3456788999998765               8899999999999954332                   14456678889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|.++.|++++++|++++.|+.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.. .+..+
T Consensus        53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~  131 (289)
T cd00200          53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTL  131 (289)
T ss_pred             ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEe
Confidence            99999999999999999999999999999888888899999999999999998888888889999999999766 67778


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      ..|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++
T Consensus       132 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         132 RGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             ccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            88999999999999966 666777799999999999888888876 4589999999999899999999999999999999


Q ss_pred             EEEEEeCCC
Q 004885          716 CRLKLQVSH  724 (725)
Q Consensus       716 ~v~~l~GH~  724 (725)
                      .+..+.+|.
T Consensus       211 ~~~~~~~~~  219 (289)
T cd00200         211 CLGTLRGHE  219 (289)
T ss_pred             eecchhhcC
Confidence            998887775

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=202.48  Aligned_cols=200  Identities=22%  Similarity=0.348  Sum_probs=170.9

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+.+.+..++|+|.|.               +|+++|+|.++.+|.-                 ....++.+.++++|.
T Consensus        58 ~~hkrsVRsvAwsp~g~---------------~La~aSFD~t~~Iw~k-----------------~~~efecv~~lEGHE  105 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGR---------------YLASASFDATVVIWKK-----------------EDGEFECVATLEGHE  105 (312)
T ss_pred             ccchheeeeeeecCCCc---------------EEEEeeccceEEEeec-----------------CCCceeEEeeeeccc
Confidence            35667778888888775               9999999999999932                 234678899999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--C
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP--D  630 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~--~  630 (725)
                      ..|.|++|+++|++||+|++|+.|-||.+..   .+++.++.+|+..|..+.|||...+|+++++|.+|++|+-...  -
T Consensus       106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW  185 (312)
T KOG0645|consen  106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW  185 (312)
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence            9999999999999999999999999999863   5688899999999999999999999999999999999987632  2


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .++.++.+|...|++++|++.|. -|++|+.|++|+||-..+   .....+...++.+.|.  ...|++++.|+.|++|.
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~---~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT---DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeecc---CcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            57899999999999999999997 567999999999998662   1122235789999999  47899999999999997


Q ss_pred             CCC
Q 004885          711 VET  713 (725)
Q Consensus       711 l~t  713 (725)
                      -..
T Consensus       260 ~s~  262 (312)
T KOG0645|consen  260 ESD  262 (312)
T ss_pred             ecC
Confidence            654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1e-22  Score=210.77  Aligned_cols=203  Identities=19%  Similarity=0.379  Sum_probs=181.1

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ..+.+.+.++++.|-|.+.               ++.+++.|.+|+.|                   +..+.-.+.++.+
T Consensus       188 s~~gh~h~vS~V~f~P~gd---------------~ilS~srD~tik~W-------------------e~~tg~cv~t~~~  233 (406)
T KOG0295|consen  188 SLIGHEHGVSSVFFLPLGD---------------HILSCSRDNTIKAW-------------------ECDTGYCVKTFPG  233 (406)
T ss_pred             HhcCcccceeeEEEEecCC---------------eeeecccccceeEE-------------------ecccceeEEeccC
Confidence            4455666777777777654               99999999999999                   3334467889999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---------------CEEEEEeCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---------------SRLATSSAD  618 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---------------~~Lasgs~D  618 (725)
                      |...|.-++.+.||.++|+|+.|-+|++|-+.+..+...+++|..+|.|++|.|..               .++++++.|
T Consensus       234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            99999999999999999999999999999999999999999999999999998732               378999999


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEE
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRI  697 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~L  697 (725)
                      ++|++||+.++. |+.++.+|...|..++|+|.|+ +|++|.+|++++|||++++.|...+.. ..-|++++|+.+-.++
T Consensus       314 ktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  314 KTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             ceEEEEeccCCe-EEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence            999999999998 8999999999999999999998 556999999999999999999999986 5669999999998899


Q ss_pred             EEEEcCCeEEEEECC
Q 004885          698 LAAAIENYISILDVE  712 (725)
Q Consensus       698 la~s~Dg~V~IwDl~  712 (725)
                      ++|+-|-+++||..+
T Consensus       392 vTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  392 VTGSVDQTVKVWECR  406 (406)
T ss_pred             EeccccceeeeeecC
Confidence            999999999999753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.90  E-value=1.5e-21  Score=199.23  Aligned_cols=197  Identities=29%  Similarity=0.539  Sum_probs=171.0

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++++++.|+.|++|.....                   ..+..+..|...|.++.|+++++++++++.|+.|++||+.+
T Consensus        64 ~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200          64 TYLASGSSDKTIRLWDLETG-------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             CEEEEEcCCCeEEEEEcCcc-------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            48889999999999954332                   34455668888999999999988999998899999999998


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      ++.+..+..|...|.+++|+|++.++++++.|+.|++||+++.. .+..+..|...|.+++|+|++..+ ++++.|+.|+
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~  202 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKL-LSSSSDGTIK  202 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEE-EEecCCCcEE
Confidence            89888999999999999999998889888889999999999776 678888898899999999998744 4666699999


Q ss_pred             EEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          667 YWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       667 IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +||++++..+..+. +...+.+++|+|++.++++++.|+.|++||+.+++++..+.+|.
T Consensus       203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             EEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            99999998888884 46689999999996677666669999999999999999998875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=1.9e-23  Score=222.82  Aligned_cols=198  Identities=18%  Similarity=0.294  Sum_probs=171.6

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      ..++.++++|+.|++|.+-++                  .+.++++.+|..+|.+++|+.+|..|+++|+|+.|++||++
T Consensus       227 ~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  227 GHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             eeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            358999999999999954332                  36788999999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      +|.++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++ .+..+..|-+.|..+.|-++|.. +++.++|+.
T Consensus       289 TG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~r-FissSDdks  365 (503)
T KOG0282|consen  289 TGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRR-FISSSDDKS  365 (503)
T ss_pred             cceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCce-EeeeccCcc
Confidence            9999988864 5678999999987 889999999999999999998 78999999999999999999984 558888999


Q ss_pred             EEEEECCCCee--------------------------------EEEEe--------------c---CCCeEEEEEecCCC
Q 004885          665 IRYWSINNGSC--------------------------------AGVFK--------------C---QSGATQMRFQPRLG  695 (725)
Q Consensus       665 I~IwDl~t~~~--------------------------------v~~~~--------------~---~~~V~sv~fspdg~  695 (725)
                      |+||+.+....                                +..|.              +   .+....|.|+|||+
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            99999874321                                11111              1   23356789999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|++|..||.|.+||.++-+.+..+++|+
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~  474 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHD  474 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCC
Confidence            99999999999999999999999999995

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=1.5e-21  Score=221.35  Aligned_cols=170  Identities=21%  Similarity=0.338  Sum_probs=147.0

Q ss_pred             EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 004885          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  619 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-------~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~Dg  619 (725)
                      ..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+.       ..+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            34679999999999999 8899999999999999999764       3567889999999999999975 6999999999


Q ss_pred             eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--CeEEEEEecCCCEE
Q 004885          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRI  697 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~--~V~sv~fspdg~~L  697 (725)
                      +|+|||++++. .+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+..+.  .+..+.|.+++..+
T Consensus       149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999887 7888899999999999999987 77899999999999999999988887643  35578899998888


Q ss_pred             EEEEc----CCeEEEEECCCC-eEEEEE
Q 004885          698 LAAAI----ENYISILDVETQ-VCRLKL  720 (725)
Q Consensus       698 la~s~----Dg~V~IwDl~tg-~~v~~l  720 (725)
                      ++++.    |+.|++||+++. .++..+
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~  254 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTV  254 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence            87653    789999999875 344433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=2.4e-21  Score=233.71  Aligned_cols=218  Identities=14%  Similarity=0.257  Sum_probs=174.1

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.               ++++|+.|+.|++|........    .      .... ..+..+. +...
T Consensus       482 ~~~~V~~i~fs~dg~---------------~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~  534 (793)
T PLN00181        482 SSNLVCAIGFDRDGE---------------FFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSK  534 (793)
T ss_pred             CCCcEEEEEECCCCC---------------EEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCc
Confidence            566688888888776               8999999999999964321000    0      0000 1112222 3467


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      |.+++|++ ++.+|++++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++. ++..
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~  613 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGT  613 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEE
Confidence            99999987 478999999999999999999999999999999999999997 78899999999999999999877 6777


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      +..+ ..|.++.|++....+|++|+.|+.|++||+++.. .+..+.. ...|.++.|. ++.+|++++.|++|+|||+++
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            7654 5799999976544588899999999999998765 4555544 5689999997 568999999999999999985


Q ss_pred             ------CeEEEEEeCCCC
Q 004885          714 ------QVCRLKLQVSHS  725 (725)
Q Consensus       714 ------g~~v~~l~GH~s  725 (725)
                            ..++++|.||.+
T Consensus       692 ~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        692 SISGINETPLHSFMGHTN  709 (793)
T ss_pred             CccccCCcceEEEcCCCC
Confidence                  368889999863

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.8e-21  Score=222.26  Aligned_cols=173  Identities=17%  Similarity=0.267  Sum_probs=142.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCeEEEEEcCCCCE-EEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATS  615 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~--------~i~~l~~H~~~V~~IafsPd~~~-Lasg  615 (725)
                      ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++.        ++..+.+|...|.+|+|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            456788999999999999996 7899999999999999997532        34567899999999999998775 5789


Q ss_pred             eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-CeEE-----EE
Q 004885          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQ-----MR  689 (725)
Q Consensus       616 s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~-~V~s-----v~  689 (725)
                      +.|++|+|||++++. .+..+. |...|.+++|+|+|. +|++++.|+.|+|||++++.++..+..+. .+..     ..
T Consensus       145 S~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        145 GFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             eCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            999999999999887 455554 567899999999998 66778889999999999999998887643 3322     23


Q ss_pred             EecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEe
Q 004885          690 FQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ  721 (725)
Q Consensus       690 fspdg~~Lla~s~Dg----~V~IwDl~t-g~~v~~l~  721 (725)
                      |++++.+|++++.|+    .|+|||+++ ++++..+.
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            458889999988774    799999995 56666554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=5.4e-22  Score=212.12  Aligned_cols=197  Identities=21%  Similarity=0.339  Sum_probs=165.9

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVL  581 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~I  581 (725)
                      -..++++++|...|.|++|+                   -.+...++.+.+|+.+|..+.|+|. +..|++|+.|+.+++
T Consensus        77 R~DG~LlaaGD~sG~V~vfD-------------------~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   77 RSDGRLLAAGDESGHVKVFD-------------------MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY  137 (487)
T ss_pred             ecCCeEEEccCCcCcEEEec-------------------cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence            34456899999999999993                   1122345677899999999999995 557889999999999


Q ss_pred             EECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          582 WCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       582 Wdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      ||+.+......+.+|+..|.|.+|+|- +..++||++||+||+||++.....+..+ .|..+|.++.|-|.|. ++++|+
T Consensus       138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg  215 (487)
T KOG0310|consen  138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG  215 (487)
T ss_pred             EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC
Confidence            999998887789999999999999994 6689999999999999999886345554 5889999999999988 677777


Q ss_pred             CCCcEEEEECCCC-eeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          661 NNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       661 ~Dg~I~IwDl~t~-~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                       ...|+|||+-+| ..+..+. |...|+|+++..++..|++++-|+.|+|||+.+.+.++.+.
T Consensus       216 -Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             -CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence             568999999854 4555554 67889999999999999999999999999999999998775

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.89  E-value=2e-21  Score=208.83  Aligned_cols=229  Identities=18%  Similarity=0.390  Sum_probs=185.5

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCC----------------------------
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------------------  527 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~----------------------------  527 (725)
                      -.++..++...|+|.|.               |+++|...|+||+|.....+                            
T Consensus        56 tEH~~~vtVAkySPsG~---------------yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a  120 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGF---------------YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA  120 (603)
T ss_pred             ccccceeEEEEeCCCce---------------EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence            34677888888888776               99999999999999766531                            


Q ss_pred             --CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE
Q 004885          528 --DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  604 (725)
Q Consensus       528 --~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia  604 (725)
                        +++.++++..-...+   ..+-.+.+|+..|.+|+|-|... ++++|++|++|.+|+-...+...++..|...|.|++
T Consensus       121 vGEGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  121 VGEGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             EecCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence              111122221111111   23456789999999999999777 699999999999999888888889999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-
Q 004885          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-  680 (725)
Q Consensus       605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-  680 (725)
                      |+|||.+|+|.+.||+|.+||-.+++ .+..+.   +|.+.|.+|.|+||+.. |++++.|.+++|||+.+.+++.++. 
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeec
Confidence            99999999999999999999999988 577776   89999999999999884 5599999999999999877665543 


Q ss_pred             -------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          681 -------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       681 -------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                                                                 |...|+++..++++.+|++|+.||.|.-||..+|.+-
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence                                                       1235889999999999999999999999999998655


Q ss_pred             EEE-eCCC
Q 004885          718 LKL-QVSH  724 (725)
Q Consensus       718 ~~l-~GH~  724 (725)
                      +-. ++|.
T Consensus       356 ~~~g~~h~  363 (603)
T KOG0318|consen  356 RLAGKGHT  363 (603)
T ss_pred             cccccccc
Confidence            433 4443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.2e-22  Score=221.83  Aligned_cols=211  Identities=18%  Similarity=0.297  Sum_probs=181.3

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+..++..+.|+|...               ++++|+.|-+|++|..                   ...+.+.++.+|-
T Consensus        48 deHdGpVRgv~FH~~qp---------------lFVSGGDDykIkVWnY-------------------k~rrclftL~GHl   93 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQP---------------LFVSGGDDYKIKVWNY-------------------KTRRCLFTLLGHL   93 (1202)
T ss_pred             hccCCccceeeecCCCC---------------eEEecCCccEEEEEec-------------------ccceehhhhcccc
Confidence            34566778888888776               9999999999999932                   3336677889999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----  630 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-----  630 (725)
                      +.|+.+.|++.-.+|+++|.|-+|+||+..+.+++.+++||...|+|..|+|..+.++++|-|-+|||||+..-.     
T Consensus        94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen   94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985210     


Q ss_pred             -----------------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE--EEe-cCCC
Q 004885          631 -----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK-CQSG  684 (725)
Q Consensus       631 -----------------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~--~~~-~~~~  684 (725)
                                             .....+.||...|+-++|+|.-+ ++++|++|+.|++|.+...+.-.  +.. |...
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn  252 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN  252 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCC
Confidence                                   12345679999999999999977 88899999999999987543221  222 3567


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |.++-|+|....+++.+.|++|+|||+...+++++|+
T Consensus       253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             cceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            9999999998899999999999999999999998885

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.9e-22  Score=200.24  Aligned_cols=201  Identities=19%  Similarity=0.291  Sum_probs=168.6

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLW  582 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IW  582 (725)
                      .++..+++++-||++++|+..                  ..-.++..+++|...|.+|.|++ ++..++++|.|++|++|
T Consensus        71 ~~e~~~~~a~GDGSLrl~d~~------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW  132 (311)
T KOG0277|consen   71 NHENQVIAASGDGSLRLFDLT------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW  132 (311)
T ss_pred             CCcceEEEEecCceEEEeccC------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence            445688889999999999522                  22347888999999999999998 45578888999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      +..-...+.++.+|...|+...|+| ..+.+++++.|+++++||++.+... ..+..|...|.+++|+.-..+++++++.
T Consensus       133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCC
Confidence            9999999999999999999999999 5789999999999999999988744 4488999999999999988999999999


Q ss_pred             CCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCC
Q 004885          662 NSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQVS  723 (725)
Q Consensus       662 Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg-~~v~~l~GH  723 (725)
                      |+.||+||+++- .++.++.+ .-.|..|.|+|.... |++++.|-+++|||.+.+ .++.++.-|
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H  277 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH  277 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence            999999999974 45555554 556999999998654 566777999999999865 444444444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.4e-21  Score=217.04  Aligned_cols=186  Identities=27%  Similarity=0.438  Sum_probs=163.1

Q ss_pred             EEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          508 FVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      +++.|+.. |.+-+|.+..+                   ..+....+|...|+|++++|||.+||+|++||+|+|||..+
T Consensus       321 WiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  321 WIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             EEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence            77776653 78889955443                   34556679999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCC-c
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS-E  664 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg-~  664 (725)
                      +.|+.+|.+|+..|+.+.|+..++.+++++-||+||.||+.... +.++|.... ....||+.+|.|. ++|+|+.|. .
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~  459 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFE  459 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEcCCCC-EEEeeccceEE
Confidence            99999999999999999999999999999999999999999877 677777543 3468889999988 777887665 5


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |+||++.+|+.+..+.+ .++|.+++|+|++..|++++.|.+|++||+-..
T Consensus       460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            99999999999999987 788999999999999999999999999998544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.88  E-value=1.5e-21  Score=202.28  Aligned_cols=215  Identities=18%  Similarity=0.265  Sum_probs=176.7

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ....+..+++++.|+.++.               ||++|.++|.|++|....+                   .....+..
T Consensus       101 eltgHKDSVt~~~Fshdgt---------------lLATGdmsG~v~v~~~stg-------------------~~~~~~~~  146 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGT---------------LLATGDMSGKVLVFKVSTG-------------------GEQWKLDQ  146 (399)
T ss_pred             EecCCCCceEEEEEccCce---------------EEEecCCCccEEEEEcccC-------------------ceEEEeec
Confidence            3445677889999999888               9999999999999944333                   33334434


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      --+.|.-+.|+|.+.+|+.|+.||.|-+|.+.+......+.+|..++++=.|.|+|++++++..||+|++||+.++. ++
T Consensus       147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~  225 (399)
T KOG0296|consen  147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PL  225 (399)
T ss_pred             ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc-ee
Confidence            55678899999999999999999999999999988888999999999999999999999999999999999998765 22


Q ss_pred             EEEe---------------------------------------------------cCCCCeEEEEEccCCC--eEEEEEe
Q 004885          634 RTFT---------------------------------------------------GHSTTVMSLDFHPSKE--DLLCSCD  660 (725)
Q Consensus       634 ~~~~---------------------------------------------------~h~~~V~sl~fsP~g~--~llaSgs  660 (725)
                      ..+.                                                   .+...+.+|.|.|...  .++|+|+
T Consensus       226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~  305 (399)
T KOG0296|consen  226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS  305 (399)
T ss_pred             EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence            2221                                                   1112233333333211  2677888


Q ss_pred             CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      -||+|.|||+...+..+.+.+..+|+.+.|.+ ..+|++++.+|.|++||.|+|.++.++.||.
T Consensus       306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~  368 (399)
T KOG0296|consen  306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ  368 (399)
T ss_pred             ccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence            99999999999999888898989999999999 5899999999999999999999999999996

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=2.4e-20  Score=213.17  Aligned_cols=212  Identities=12%  Similarity=0.146  Sum_probs=160.6

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|+|+..              .++++|+.|+.|++|....+....           ......+..+.+|.
T Consensus        71 ~gH~~~V~~lafsP~~~--------------~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~  125 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFS--------------EILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHK  125 (568)
T ss_pred             cCCCCCEEEEEEcCCCC--------------CEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCC
Confidence            34556788888888532              389999999999999765432100           00012345678999


Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          556 SKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       556 ~~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ..|.+|+|+|++.. |++++.|++|+|||++++..+..+. |...|.+++|+|++.+|++++.|+.|+|||++++. .+.
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~  203 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IAS  203 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEE
Confidence            99999999998875 5789999999999999988777775 66789999999999999999999999999999987 678


Q ss_pred             EEecCCCCeEEE-----EEccCCCeEEEEEeCC----CcEEEEECCC-CeeEEEEecCCCeE--EEEEe-cCCCEEEEEE
Q 004885          635 TFTGHSTTVMSL-----DFHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFKCQSGAT--QMRFQ-PRLGRILAAA  701 (725)
Q Consensus       635 ~~~~h~~~V~sl-----~fsP~g~~llaSgs~D----g~I~IwDl~t-~~~v~~~~~~~~V~--sv~fs-pdg~~Lla~s  701 (725)
                      .+.+|.+.+.+.     .|++++.+++ +++.|    +.|+|||+++ ..++..+..+....  ...|. +++.++++|+
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk  282 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK  282 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence            899998765433     3457877555 54444    4799999995 66776666533322  23344 4467788888


Q ss_pred             cCCeEEEEECCCCe
Q 004885          702 IENYISILDVETQV  715 (725)
Q Consensus       702 ~Dg~V~IwDl~tg~  715 (725)
                      .|+.|++|++..+.
T Consensus       283 GD~tIr~~e~~~~~  296 (568)
T PTZ00420        283 GDGNCRYYQHSLGS  296 (568)
T ss_pred             CCCeEEEEEccCCc
Confidence            99999999998774

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.88  E-value=3.1e-21  Score=200.77  Aligned_cols=208  Identities=21%  Similarity=0.303  Sum_probs=169.9

Q ss_pred             cCCCCcEEEEeeCCCcEEEecCCCC-CCCCCcc-----ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004885          502 LTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRV-----GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (725)
Q Consensus       502 ~~~~~~~lasGs~D~~V~vw~s~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~  575 (725)
                      +......+++|++|..|++|....+ .+.-...     ..........+..++.++.+|+.+|.++.|++ ...+++++.
T Consensus       201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw  279 (423)
T KOG0313|consen  201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW  279 (423)
T ss_pred             ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecc
Confidence            3444557899999999999972222 1110000     01111123345567889999999999999997 678999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCC
Q 004885          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKE  653 (725)
Q Consensus       576 Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~  653 (725)
                      |++|++||+.++..+.++.+ ...++||+++|..++|++|+.|..|++||.+++.  .....|.+|...|.+|.|+|...
T Consensus       280 DHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~  358 (423)
T KOG0313|consen  280 DHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE  358 (423)
T ss_pred             cceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence            99999999999999888875 5679999999999999999999999999999875  34578899999999999999999


Q ss_pred             eEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          654 DLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       654 ~llaSgs~Dg~I~IwDl~t~~-~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ++|++++.|+++++||+|+.+ ++..+.. ...|.++.|.. +..|++|+.|++|+|+.-.
T Consensus       359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            999999999999999999876 7777765 67899999986 4789999999999998643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.88  E-value=1.6e-20  Score=202.02  Aligned_cols=214  Identities=14%  Similarity=0.248  Sum_probs=171.9

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec--
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--  552 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  552 (725)
                      ...++.-+.++.|+|||.               ++++.+.|++|.+|                   ++.+.+.+..+.  
T Consensus       186 ~r~HskFV~~VRysPDG~---------------~Fat~gsDgki~iy-------------------DGktge~vg~l~~~  231 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGS---------------RFATAGSDGKIYIY-------------------DGKTGEKVGELEDS  231 (603)
T ss_pred             ccccccceeeEEECCCCC---------------eEEEecCCccEEEE-------------------cCCCccEEEEecCC
Confidence            345667889999999987               88999999999999                   444444555555  


Q ss_pred             -CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------------------
Q 004885          553 -ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---------------------------------------  592 (725)
Q Consensus       553 -~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~---------------------------------------  592 (725)
                       +|.+.|++++|+||+..|++++.|++++|||+.+.+++.+                                       
T Consensus       232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~  311 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS  311 (603)
T ss_pred             CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence             9999999999999999999999999999999976554433                                       


Q ss_pred             ----eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------------------------------------
Q 004885          593 ----LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------------  631 (725)
Q Consensus       593 ----l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-------------------------------------  631 (725)
                          +.+|...|+++..+|++++|++|+.||.|.-||..++..                                     
T Consensus       312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence                357999999999999999999999999999999643210                                     


Q ss_pred             --------------------------------------------------------------------------ee----
Q 004885          632 --------------------------------------------------------------------------SL----  633 (725)
Q Consensus       632 --------------------------------------------------------------------------~l----  633 (725)
                                                                                                .+    
T Consensus       392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys  471 (603)
T KOG0318|consen  392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS  471 (603)
T ss_pred             ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence                                                                                      00    


Q ss_pred             ---------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE-E-ecCCCeEEEEEecCCCEEEEEEc
Q 004885          634 ---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-F-KCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       634 ---------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~-~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                               .....|.+.|++|+|+|++. +|++|+..+.|.+||+.+...... + -|...|.+|+|+|+..++++|+.
T Consensus       472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl  550 (603)
T KOG0318|consen  472 LSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL  550 (603)
T ss_pred             ecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence                     01224778899999999988 778999999999999988766322 2 25788999999999999999999


Q ss_pred             CCeEEEEECCCC-eEEEEEeCC
Q 004885          703 ENYISILDVETQ-VCRLKLQVS  723 (725)
Q Consensus       703 Dg~V~IwDl~tg-~~v~~l~GH  723 (725)
                      |..|.||+++.. +.+....+|
T Consensus       551 Dt~Viiysv~kP~~~i~iknAH  572 (603)
T KOG0318|consen  551 DTNVIIYSVKKPAKHIIIKNAH  572 (603)
T ss_pred             cceEEEEEccChhhheEecccc
Confidence            999999999876 333333344

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.87  E-value=3.1e-21  Score=219.52  Aligned_cols=194  Identities=23%  Similarity=0.379  Sum_probs=175.1

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      +.++.+|+.|.+|++|                   +..+...+.. +.+|.+.|.+++|...+.+|++|+.|++++|||+
T Consensus       218 ~~~~~~~s~~~tl~~~-------------------~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLW-------------------DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             cCeEEecCCCceeEEe-------------------ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            4588999999999999                   3444455555 9999999999999877889999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .++.+.+++.+|.+.|.++...+  .++++|+.|.+|+||++.++. ++.++.+|.+.|.++..+  +. ++++|+.|++
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~  352 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGT  352 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CC-EEEEEecCce
Confidence            99999999999999999998864  578889999999999999988 899999999999999998  33 7889999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCC
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSHS  725 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~s  725 (725)
                      |+|||+.+++|+.++.+ ...|+++.+... .+++.|+.|++|++||+++. +|+++|.+|.+
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS  414 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence            99999999999999987 677999988876 78999999999999999999 99999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=2.8e-20  Score=224.41  Aligned_cols=190  Identities=22%  Similarity=0.267  Sum_probs=162.0

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl  584 (725)
                      ..++++++.|+.|++|+...                   ...+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+
T Consensus       545 ~~~las~~~Dg~v~lWd~~~-------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVAR-------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCC-------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            56899999999999994322                   245677889999999999997 7899999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      .++..+..+..+ ..|.++.|++ ++.+|++|+.|++|++||+++...++..+.+|...|.++.|. ++. .+++++.|+
T Consensus       606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~  682 (793)
T PLN00181        606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN  682 (793)
T ss_pred             CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence            999888888754 6799999965 689999999999999999998764577888999999999997 445 677899999


Q ss_pred             cEEEEECCC------CeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          664 EIRYWSINN------GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       664 ~I~IwDl~t------~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      +|+|||++.      ..++..+.. ...+..++|++++.+|++|+.|+.|+||+......+
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            999999974      356677765 556889999999999999999999999998766544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.1e-22  Score=196.28  Aligned_cols=186  Identities=22%  Similarity=0.296  Sum_probs=159.8

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~  585 (725)
                      +.+.++|+|++|++|                   ....-..+.++++|..-|+...|+| ..++++++|.|+++++||++
T Consensus       118 ~~~ltsSWD~TiKLW-------------------~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLW-------------------DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             eeEEeeccCCceEee-------------------cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            345666999999999                   3333456778999999999999999 67899999999999999998


Q ss_pred             CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .......++.|...|.|+.|+. +...|+||+.|+.||+||+++-..++..+.+|.-.|..|.|+|....+|++|+.|-+
T Consensus       179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT  258 (311)
T KOG0277|consen  179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT  258 (311)
T ss_pred             CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence            7433334889999999999988 678899999999999999999888899999999999999999999999999999999


Q ss_pred             EEEEECC-CCeeEEEEec-CCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 004885          665 IRYWSIN-NGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIENYISILDV  711 (725)
Q Consensus       665 I~IwDl~-t~~~v~~~~~-~~~V~sv~fspd-g~~Lla~s~Dg~V~IwDl  711 (725)
                      +||||.. ...++.+..+ ..-|..+.|++- ..+++.++.|..++||+-
T Consensus       259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999987 4456666665 455888998874 457888899999999983

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=1.2e-22  Score=208.52  Aligned_cols=213  Identities=23%  Similarity=0.398  Sum_probs=174.2

Q ss_pred             ccccCCCCCeeEEEEecCCCccccc------cCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceee
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~------~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~  546 (725)
                      ....++.++.++-.|....-.++-.      +.-.+.-.++++++|+.|.+|++|++..+                   +
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg-------------------e  268 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG-------------------E  268 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC-------------------c
Confidence            3445666677777776654311111      11123344568999999999999955444                   5


Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrv  623 (725)
                      .+.++-+|...|..+.|+  ..++++|+.|.++.|||+....   +.+++.+|...|+.+.|+  .+++++++.|.+|++
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  344 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence            677788999999999996  5799999999999999997654   345678999999999996  569999999999999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      |++.+.+ +++++.+|...|.|+.+.   ..++++|+.|.+|++||+..|.|++.+++ ..-|.+|.|..  +.+++|+.
T Consensus       345 W~~st~e-fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaY  418 (499)
T KOG0281|consen  345 WSTSTCE-FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAY  418 (499)
T ss_pred             Eecccee-eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccc
Confidence            9999998 899999999999999875   33899999999999999999999999997 44589999974  68999999


Q ss_pred             CCeEEEEECCCC
Q 004885          703 ENYISILDVETQ  714 (725)
Q Consensus       703 Dg~V~IwDl~tg  714 (725)
                      ||+|+|||+.++
T Consensus       419 DGkikvWdl~aa  430 (499)
T KOG0281|consen  419 DGKIKVWDLQAA  430 (499)
T ss_pred             cceEEEEecccc
Confidence            999999999876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=8.6e-21  Score=219.10  Aligned_cols=225  Identities=19%  Similarity=0.339  Sum_probs=185.9

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ....+..+++|+.|++||.               ++|+||.|..|.+|.-.. .......+..-.......|+.+..+.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~---------------~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~  127 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGS---------------YLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRG  127 (942)
T ss_pred             eeccccCceeEEEECCCCC---------------eEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEec
Confidence            3445677889999999998               999999999999994433 111111111112334567899999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---  630 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~---  630 (725)
                      |.+.|.+++|+|++.+|++++.|.+|.|||..+++.+.++++|.+.|..+.|+|-|+||++-+.|++|+||++.+-.   
T Consensus       128 H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  128 HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999954210   


Q ss_pred             -------------------------------------e-----------eeEEEecCCCCeEEEEEccC--------C--
Q 004885          631 -------------------------------------Y-----------SLRTFTGHSTTVMSLDFHPS--------K--  652 (725)
Q Consensus       631 -------------------------------------~-----------~l~~~~~h~~~V~sl~fsP~--------g--  652 (725)
                                                           .           .-..+.||..++.+++|+|.        |  
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~  287 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTS  287 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCc
Confidence                                                 0           12345689999999999982        1  


Q ss_pred             -----C-eEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          653 -----E-DLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       653 -----~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                           . .++|+|+.|++|.||.....+++.....  ...|..++|+|||-.|++|+.||+|.++.++..
T Consensus       288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                 1 2788899999999999987777766654  678999999999999999999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.3e-21  Score=216.51  Aligned_cols=210  Identities=21%  Similarity=0.346  Sum_probs=178.4

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      +..+.-+.|+|...               ++.++=..|.|.+|+.                   .....+..+.+|.++|
T Consensus         9 SsRvKglsFHP~rP---------------wILtslHsG~IQlWDY-------------------RM~tli~rFdeHdGpV   54 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRP---------------WILTSLHSGVIQLWDY-------------------RMGTLIDRFDEHDGPV   54 (1202)
T ss_pred             cccccceecCCCCC---------------EEEEeecCceeeeehh-------------------hhhhHHhhhhccCCcc
Confidence            34455667777665               8888889999999932                   2224566788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      +.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-..|..+.||+...+|+++|.|-+||||+..+.. |+.+++|
T Consensus        55 Rgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltG  133 (1202)
T KOG0292|consen   55 RGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTG  133 (1202)
T ss_pred             ceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988 8999999


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------C-------------------eeE--EEEec-CCCeEEE
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------G-------------------SCA--GVFKC-QSGATQM  688 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------~-------------------~~v--~~~~~-~~~V~sv  688 (725)
                      |...|+|..|+|..+ ++++++-|-+|||||+..        +                   .++  ..+++ ..+|+-+
T Consensus       134 HnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa  212 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA  212 (1202)
T ss_pred             CceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence            999999999999866 889999999999999852        1                   111  12233 5679999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCCC
Q 004885          689 RFQPRLGRILAAAIENYISILDVETQV--CRLKLQVSH  724 (725)
Q Consensus       689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~--~v~~l~GH~  724 (725)
                      +|+|.-..|++|+.|..|++|.+...+  .+.+..||-
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~  250 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY  250 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence            999998999999999999999986543  455566664

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.87  E-value=4.6e-20  Score=184.56  Aligned_cols=214  Identities=16%  Similarity=0.186  Sum_probs=185.3

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .+...+.++.+-+.|+.+|.               +|.+++.|..+.+|.+.++                   +.+-+++
T Consensus         4 i~l~GHERplTqiKyN~eGD---------------LlFscaKD~~~~vw~s~nG-------------------erlGty~   49 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD---------------LLFSCAKDSTPTVWYSLNG-------------------ERLGTYD   49 (327)
T ss_pred             cccccCccccceEEecCCCc---------------EEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence            34456788889999999887               9999999999999966555                   4677899


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTE  627 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----DgtIrvWDl~  627 (725)
                      +|++.|.||..+-+.+++++|+.|.++++||+++++.+..++- ..+|..+.|++++.+++.+..     .+.|.++|++
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~  128 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR  128 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence            9999999999999999999999999999999999999999874 678999999999998877754     4689999998


Q ss_pred             CCC------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCCCEEEE
Q 004885          628 NPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       628 ~~~------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg~~Lla  699 (725)
                      ...      .++..+..+...++.+.|.|.+. .+++|..||.|.+||++++..+..- + +...|+.|++++|..++++
T Consensus       129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT  207 (327)
T KOG0643|consen  129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT  207 (327)
T ss_pred             CChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence            432      35777778889999999999988 6669999999999999998554433 2 3668999999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEEeC
Q 004885          700 AAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       700 ~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++.|.+-++||+++-++++++..
T Consensus       208 ~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  208 GSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             cccCccceeeeccceeeEEEeee
Confidence            99999999999999999998853

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.5e-21  Score=218.75  Aligned_cols=172  Identities=24%  Similarity=0.374  Sum_probs=151.6

Q ss_pred             eEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C------
Q 004885          547 EFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F------  587 (725)
Q Consensus       547 ~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--------------------------------~------  587 (725)
                      ....+. +|.+.|.|+.||+||+|||+||.|+.|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334455 8999999999999999999999999999997643                                0      


Q ss_pred             ----------------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885          588 ----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (725)
Q Consensus       588 ----------------------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s  645 (725)
                                            ++++.|.||.+.|.+|.|+.+ .+|++++.|+|||+|++.... |+.+|. |...|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeEE
Confidence                                  122345789999999999975 689999999999999999877 888887 9999999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |+|+|..+.+|++|+-|+.||||++...+.+.-...+.-|+++||.|||++.++|+.+|.+++|+.+..+.+..+.
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            9999998889999999999999999998888887778899999999999999999999999999999877766554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.87  E-value=8.9e-21  Score=215.85  Aligned_cols=190  Identities=22%  Similarity=0.322  Sum_probs=168.7

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      .+.++.+|+.|.++++|+.                   .+......+.+|.+.|.|+..  ...++++|+.|.+|+||++
T Consensus       260 ~~~~lvsgS~D~t~rvWd~-------------------~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDC-------------------STGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             CCCEEEEEecCCcEEeEec-------------------CCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEec
Confidence            3568999999999999943                   333677888999999999998  4568888999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .++.++.++.+|.++|.+|.++  +.++++|+.|++|+|||+.+.+ ++..+.+|...|.++.+...  ..+++|+.|++
T Consensus       319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~  393 (537)
T KOG0274|consen  319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTT  393 (537)
T ss_pred             cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccc
Confidence            9999999999999999999997  7899999999999999999887 89999999999999988875  36779999999


Q ss_pred             EEEEECCCC-eeEEEEecCCC-eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          665 IRYWSINNG-SCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       665 I~IwDl~t~-~~v~~~~~~~~-V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      |++||+++. +|+.++.++.. |..+.+  .+.+|++++.|++|++||.++++|++.+++
T Consensus       394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            999999999 99999988555 444433  457899999999999999999999999999

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.7e-21  Score=213.67  Aligned_cols=207  Identities=15%  Similarity=0.283  Sum_probs=178.1

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd  583 (725)
                      ..++++.+||.|+.|++|....+...             ..-.....++.|++.|.++....+++.|++||.|-+|++|+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~  101 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN  101 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence            34569999999999999965544211             11124567789999999999999999999999999999999


Q ss_pred             CCCC--eEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eeEEEe-cCCCCeEEEEEcc
Q 004885          584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP  650 (725)
Q Consensus       584 l~~~--~~i~~l~~H~~~V~~Iaf-sPd~~~Lasgs~DgtIrvWDl~~~~~---------~l~~~~-~h~~~V~sl~fsP  650 (725)
                      ....  -++.++..|...|.|+++ .++...+++|+.|+.|.|||++++..         ....+. ++...|.+++..+
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence            9876  678889999999999999 77889999999999999999997631         112222 7889999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       651 ~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .|. ++++|+..+.|++||.++++.+..+.+ ...|..+..++||..++++++||+|++||+.-.+|++++..|+
T Consensus       182 t~t-~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  182 TGT-IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             cce-EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            985 888999999999999999998888876 6679999999999999999999999999999999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=1.2e-20  Score=217.78  Aligned_cols=220  Identities=20%  Similarity=0.315  Sum_probs=182.0

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEee--CCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs--~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      +-.+..+|++.               -+++|+  .|+.+++|....-.       +..+..+..--+.+.+...|.+.|+
T Consensus        16 IfSIdv~pdg~---------------~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~   73 (942)
T KOG0973|consen   16 IFSIDVHPDGV---------------KFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVN   73 (942)
T ss_pred             EEEEEecCCce---------------eEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCcee
Confidence            44566667666               779999  99999999432111       0001111112356778889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~------------------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      |+.|++||++||+||+|+.|.||....                  ++++.++.+|...|.+++|+|++.+|++++.|++|
T Consensus        74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV  153 (942)
T KOG0973|consen   74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV  153 (942)
T ss_pred             EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence            999999999999999999999998751                  34678899999999999999999999999999999


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeEEEEEecCC
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL  694 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg  694 (725)
                      .||+..+.+ ++..+.+|.+.|..+.|+|-|+ +||+-++|++|+||.+.+..+.+.+..       ...+..+.|+|||
T Consensus       154 iiwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG  231 (942)
T KOG0973|consen  154 IIWNAKTFE-LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG  231 (942)
T ss_pred             EEEccccce-eeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence            999999995 8999999999999999999998 778999999999999888777766653       3458899999999


Q ss_pred             CEEEEEEc----CCeEEEEECCCCeEEEEEeCCCC
Q 004885          695 GRILAAAI----ENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       695 ~~Lla~s~----Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .+|++...    -.++.|.+..+.++-..|-||++
T Consensus       232 ~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~  266 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA  266 (942)
T ss_pred             CeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence            99988754    35799999999999999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=9.3e-21  Score=201.44  Aligned_cols=193  Identities=23%  Similarity=0.394  Sum_probs=162.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-  585 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~-  585 (725)
                      .+++|+.|+.|++|+......            +.........+.+|.+.|.+++|++ +..+|++++.|+.+.|||++ 
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~  259 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS  259 (422)
T ss_pred             eEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence            678899999999996654421            1334556778899999999999999 56689999999999999999 


Q ss_pred             -CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          586 -SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       586 -~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                       +.++.....+|.+.|.|++|.| ++..||||+.|++|++||+++...++.++.+|...|.+|.|+|....+|++++.|+
T Consensus       260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence             5667778889999999999999 57788999999999999999998899999999999999999999999999999999


Q ss_pred             cEEEEECCCC------------eeEEEEec---CCCeEEEEEecCCCEEEE-EEcCCeEEEEECC
Q 004885          664 EIRYWSINNG------------SCAGVFKC---QSGATQMRFQPRLGRILA-AAIENYISILDVE  712 (725)
Q Consensus       664 ~I~IwDl~t~------------~~v~~~~~---~~~V~sv~fspdg~~Lla-~s~Dg~V~IwDl~  712 (725)
                      .+.|||+..-            .+...|.|   ...|..+.|+|+..++++ ++.|+.+.||...
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999631            12223433   556999999999887554 4668999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.7e-20  Score=207.30  Aligned_cols=210  Identities=21%  Similarity=0.322  Sum_probs=184.4

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC-CCCC
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSK  557 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~  557 (725)
                      ...++++.|+++|.               +|+.|..++.|.+|                   +....+.+..+.+ |...
T Consensus       217 ~~~vtSv~ws~~G~---------------~LavG~~~g~v~iw-------------------D~~~~k~~~~~~~~h~~r  262 (484)
T KOG0305|consen  217 EELVTSVKWSPDGS---------------HLAVGTSDGTVQIW-------------------DVKEQKKTRTLRGSHASR  262 (484)
T ss_pred             CCceEEEEECCCCC---------------EEEEeecCCeEEEE-------------------ehhhccccccccCCcCce
Confidence            45566666666665               99999999999999                   3334455566667 9999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      |-|++|+  +..+.+|+.|+.|.++|++....... +.+|...|+.+.|++|+.+|++|+.|..+.|||..... ++..+
T Consensus       263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~  339 (484)
T KOG0305|consen  263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTF  339 (484)
T ss_pred             eEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEE
Confidence            9999996  78899999999999999988655444 88999999999999999999999999999999997766 78999


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc--CCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~--Dg~V~IwDl~  712 (725)
                      ..|.+.|.+++|+|....+||+|+  .|++|++||..++.++..+....-|.+|.|++..+.|+++..  ++.|.||+..
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p  419 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP  419 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence            999999999999999888999876  689999999999999999998899999999999888887644  7899999999


Q ss_pred             CCeEEEEEeCCCC
Q 004885          713 TQVCRLKLQVSHS  725 (725)
Q Consensus       713 tg~~v~~l~GH~s  725 (725)
                      +.+.+..+.||..
T Consensus       420 s~~~~~~l~gH~~  432 (484)
T KOG0305|consen  420 SMKLVAELLGHTS  432 (484)
T ss_pred             ccceeeeecCCcc
Confidence            9999999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.3e-19  Score=183.74  Aligned_cols=224  Identities=19%  Similarity=0.237  Sum_probs=177.4

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccc-----------------------
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVG-----------------------  534 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~-----------------------  534 (725)
                      -...+..+.|+.+|.               ++.+++.|..+++|+..++...+....                       
T Consensus        13 ~~~~i~sl~fs~~G~---------------~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk   77 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGL---------------LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK   77 (311)
T ss_pred             CCCceeEEEecCCCC---------------EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC
Confidence            355678888888887               788888899999997776632221111                       


Q ss_pred             -----cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC
Q 004885          535 -----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  609 (725)
Q Consensus       535 -----~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~  609 (725)
                           ++...   .+-+.++.+.||...|+.|+.+|-+..+++++.|++|++||++..++...+.-  ..-..++|+|.|
T Consensus        78 ~d~tIryLsl---~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~G  152 (311)
T KOG1446|consen   78 EDDTIRYLSL---HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEG  152 (311)
T ss_pred             CCCceEEEEe---ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCC
Confidence                 11111   22356788999999999999999889999999999999999998888776643  334567899999


Q ss_pred             CEEEEEeCCCeEEEEECCCC-CeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---
Q 004885          610 SRLATSSADRTVRVWDTENP-DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---  682 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~-~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---  682 (725)
                      -++|++.....|++||++.- +.+..+|.   +.....+.|.|+|+|+++|++ ...+.+++.|.-+|..+.++...   
T Consensus       153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNA  231 (311)
T ss_pred             cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCC
Confidence            99999998889999999875 23445544   335678999999999977755 45788999999999998888752   


Q ss_pred             C-CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          683 S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       683 ~-~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      . -..+.+|.||+.++++++.||+|.||++++|..+..+.|
T Consensus       232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            1 235788999999999999999999999999999999988

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.85  E-value=3.5e-22  Score=203.33  Aligned_cols=168  Identities=24%  Similarity=0.419  Sum_probs=152.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l--------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      +..+.+.|..|||||.+|++|+-||.|.|||.-+++....+        --+..+|.||.|+.|...|++|+.||.|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34566899999999999999999999999999888765443        3467899999999999999999999999999


Q ss_pred             ECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       625 Dl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      .++++. |++.|. .|...|+|+.|+.|+..++ +++.|.+|||.-++.|+++..|++ ...|+.+.|.+||.+++++++
T Consensus       291 ri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  291 RIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEecch-HHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            999998 788876 8999999999999988555 889999999999999999999997 566999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEeC
Q 004885          703 ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ||+|+||+.++.+|+.+|+.
T Consensus       369 DgtvkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKP  388 (508)
T ss_pred             CccEEEecCcchhhhhhccC
Confidence            99999999999999998863

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=4.7e-22  Score=220.07  Aligned_cols=197  Identities=21%  Similarity=0.353  Sum_probs=176.2

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd  583 (725)
                      ...+++++|++|..+.+|.....                   ..+..+.+|..+|.|+.|+++..+|++|+.||+|++||
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             ccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence            34579999999999999933222                   22234789999999999999999999999999999999


Q ss_pred             CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       584 l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      ++..+.++++.+|...|..+.|+|-+.++++|+.|+-+++||++... |...+.+|...|..+.|+|+|+ +++++++|.
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~  176 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDN  176 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCcc
Confidence            99999999999999999999999999999999999999999999877 8999999999999999999998 677899899


Q ss_pred             cEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +|+|||+..|+.+..|+ +.+.+.++.|+|..-.+..|+.|++|++||+++.+.|-..+
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence            99999999999999999 47889999999997777788889999999999887776544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.2e-20  Score=197.78  Aligned_cols=218  Identities=18%  Similarity=0.245  Sum_probs=189.1

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .....++..+.-+.|+++|+               ++|+++.|.+.-+|....+                ..++.++++.
T Consensus       218 qil~~htdEVWfl~FS~nGk---------------yLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlv  266 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGK---------------YLASASKDSTAIIWIVVYD----------------VHFKLKKTLV  266 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCe---------------eEeeccCCceEEEEEEecC----------------cceeeeeeee
Confidence            46677888999999999998               9999999999999955443                1267889999


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      +|..+|..|.||||.++|++|+.|..+.+||+.++.+.+.+. +|...+.+++|.||+..+++|+.|++|..||++... 
T Consensus       267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-  345 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-  345 (519)
T ss_pred             cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-
Confidence            999999999999999999999999999999999998887764 346889999999999999999999999999998643 


Q ss_pred             eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          632 SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       632 ~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                       +....+-. ..|.+++..+||+++++++ .|..|++|+.++..++..+..+.+|++++.+.+++++++--.+..|++||
T Consensus       346 -~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWD  423 (519)
T KOG0293|consen  346 -LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWD  423 (519)
T ss_pred             -hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence             34444332 4599999999999777555 69999999999887777777789999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCC
Q 004885          711 VETQVCRLKLQVSH  724 (725)
Q Consensus       711 l~tg~~v~~l~GH~  724 (725)
                      ++..+.+..+.||.
T Consensus       424 l~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  424 LEENKLVRKYFGHK  437 (519)
T ss_pred             cchhhHHHHhhccc
Confidence            99999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.85  E-value=1.4e-21  Score=208.57  Aligned_cols=172  Identities=21%  Similarity=0.363  Sum_probs=157.3

Q ss_pred             eeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885          545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIr  622 (725)
                      -+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.++..|+++++|+.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            356788999999999999999 899999999999999999976 899999999999999999999999999999999999


Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s  701 (725)
                      +||++++. ++..|.. ...++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..|.|-++|.++++++
T Consensus       284 lwDtETG~-~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQ-VLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccce-EEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999998 6766653 356899999999978999999999999999999999888876 57799999999999999999


Q ss_pred             cCCeEEEEECCCCeEEE
Q 004885          702 IENYISILDVETQVCRL  718 (725)
Q Consensus       702 ~Dg~V~IwDl~tg~~v~  718 (725)
                      .|++|+||+.+.+..+.
T Consensus       362 Ddks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIK  378 (503)
T ss_pred             cCccEEEEEcCCCccch
Confidence            99999999999875544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=6.8e-20  Score=186.14  Aligned_cols=216  Identities=20%  Similarity=0.297  Sum_probs=162.6

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .+.-.+...++.+.|+|...              .++++||||++||+|...+..               . + .-+...
T Consensus        21 ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g---------------~-~-~~ka~~   69 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSG---------------Q-L-VPKAQQ   69 (347)
T ss_pred             ecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCC---------------c-c-cchhhh
Confidence            45556667888999999222              478899999999999554431               0 0 114456


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~--~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+-.|.++|.++.|-+...  .|+||+.|++|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            799999999999999999999999999999999985 456778999999999988654  89999999999999998654


Q ss_pred             eeeEEE-------------------------------------ecC----CCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885          631 YSLRTF-------------------------------------TGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       631 ~~l~~~-------------------------------------~~h----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD  669 (725)
                       ++.++                                     +.+    ...+.||+...+... ++.|+.+|.+.|..
T Consensus       149 -pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~  226 (347)
T KOG0647|consen  149 -PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQY  226 (347)
T ss_pred             -eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEe
Confidence             11111                                     111    123677877777663 46788888888888


Q ss_pred             CCCC--eeEEEEecCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          670 INNG--SCAGVFKCQS----------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       670 l~t~--~~v~~~~~~~----------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++.+  +.-.+|+++.          .|.+|+|+|..+.|+++++||++.+||-.....+++.+-
T Consensus       227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~  291 (347)
T KOG0647|consen  227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET  291 (347)
T ss_pred             cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc
Confidence            8765  3333444422          378899999999999999999999999776655554443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.84  E-value=1.1e-19  Score=188.48  Aligned_cols=175  Identities=22%  Similarity=0.282  Sum_probs=159.6

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      ..+.+|..|++.|++|+.+|+.++++||+.|...+||++.++.....+.+|...|+++.|+.++.+|+||+.+|.|+||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      ..++. ....+......|.-+.|||.+. +|++|+.||.|.+|.+.++.....+.+ ..++++=+|.|+|+.++++..||
T Consensus       135 ~stg~-~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  135 VSTGG-EQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             cccCc-eEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            99988 4555555567788899999877 778999999999999999777777765 67799999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEeC
Q 004885          705 YISILDVETQVCRLKLQV  722 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~G  722 (725)
                      +|++||++++.+++++.+
T Consensus       213 ti~~Wn~ktg~p~~~~~~  230 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQ  230 (399)
T ss_pred             eEEEEecCCCceeEEecc
Confidence            999999999999998874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.84  E-value=7.4e-20  Score=190.55  Aligned_cols=198  Identities=17%  Similarity=0.277  Sum_probs=170.2

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLW  582 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd---g~~LaSgs~Dg~V~IW  582 (725)
                      ..++.+|++||.+++|..                    ..+....+.+|+++|.+++|.-.   ...|++++.|.++++|
T Consensus       115 ~~~IltgsYDg~~riWd~--------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw  174 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL--------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW  174 (423)
T ss_pred             CceEEEeecCCeeEEEec--------------------CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence            679999999999999922                    23577888999999998888542   2369999999999999


Q ss_pred             ECCCCeE----EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeeE
Q 004885          583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLR  634 (725)
Q Consensus       583 dl~~~~~----i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~------------------------~~~l~  634 (725)
                      -++.++.    +....||...|-+|+..+++.++++|+.|.+|+||+..+.                        ..++.
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            8876543    3344599999999999999999999999999999993211                        12577


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ++.+|..+|.+|.|++.  ..+++++.|.+|++||+.++.++..+.+....+++..+|....|++|+.|..|++||-+++
T Consensus       255 tl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            88999999999999984  3678999999999999999999999999999999999999899999999999999999987


Q ss_pred             ---eEEEEEeCCCC
Q 004885          715 ---VCRLKLQVSHS  725 (725)
Q Consensus       715 ---~~v~~l~GH~s  725 (725)
                         -..++|-||.+
T Consensus       333 ~gs~v~~s~~gH~n  346 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKN  346 (423)
T ss_pred             CCceeEEeeecchh
Confidence               57789999975

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=190.64  Aligned_cols=230  Identities=14%  Similarity=0.196  Sum_probs=181.0

Q ss_pred             cccCCCCCeeEEEEecCCCc--------cccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCcee
Q 004885          474 LQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~--------~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~  545 (725)
                      ....++.+++++.|.-....        ...+....+......+.+++.|..|++|.++..                   
T Consensus       233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------------------  293 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------------------  293 (506)
T ss_pred             cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence            33444555555555443321        122233333444557889999999999955443                   


Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRV  623 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrv  623 (725)
                      .+...+..|..+|+.+..+|.|.||++++.|++..+.|++++..+......  .-.+++.+|||||-+|.+|..|+.|+|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            244566789999999999999999999999999999999999887665432  235899999999999999999999999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s  701 (725)
                      ||+.+.. .+..|.+|.++|..|.|+.+| |+++++++|++|++||+|.-+...++..  ..+|.+++|++.|.+|++++
T Consensus       374 wdlks~~-~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  374 WDLKSQT-NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             EEcCCcc-ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence            9999988 789999999999999999886 4778888899999999998887777765  34699999999999999998


Q ss_pred             cCCeEEEEECC--CCeEEEEEeCCC
Q 004885          702 IENYISILDVE--TQVCRLKLQVSH  724 (725)
Q Consensus       702 ~Dg~V~IwDl~--tg~~v~~l~GH~  724 (725)
                      .|=.|++++-.  ...++..+.-|.
T Consensus       452 ~~l~Vy~~~k~~k~W~~~~~~~~~s  476 (506)
T KOG0289|consen  452 SDLQVYICKKKTKSWTEIKELADHS  476 (506)
T ss_pred             ceeEEEEEecccccceeeehhhhcc
Confidence            77777777743  347777776665

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.84  E-value=7.5e-20  Score=181.46  Aligned_cols=197  Identities=23%  Similarity=0.334  Sum_probs=169.5

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      .-+|++++.|.+||.|.                   ..+.....++....+.|+.+...||++.||+++. -.||+||++
T Consensus        10 ~viLvsA~YDhTIRfWq-------------------a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~   69 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQ-------------------ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN   69 (311)
T ss_pred             ceEEEeccCcceeeeee-------------------hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc
Confidence            34899999999999993                   3333566777777788999999999999999985 479999998


Q ss_pred             CCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          586 SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       586 ~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      +.+  ++.+|++|+..|+.|.|..++++++||+.||++||||++... +-+.|. |..+|++|..+|+...+| +|+.+|
T Consensus        70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~-~~spVn~vvlhpnQteLi-s~dqsg  146 (311)
T KOG0315|consen   70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQ-HNSPVNTVVLHPNQTELI-SGDQSG  146 (311)
T ss_pred             CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhcc-CCCCcceEEecCCcceEE-eecCCC
Confidence            754  689999999999999999999999999999999999999966 555554 679999999999977554 999999


Q ss_pred             cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEeCCCC
Q 004885          664 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQVSHS  725 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg------~~v~~l~GH~s  725 (725)
                      .|+|||+.+..|.+.+..  ...|.++.+.|||.+++++...|..+||++-+.      ++++.|+.|++
T Consensus       147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            999999999888777654  567999999999999999999999999998764      67778888864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=6.8e-20  Score=203.70  Aligned_cols=204  Identities=20%  Similarity=0.300  Sum_probs=170.8

Q ss_pred             cCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004885          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (725)
Q Consensus       502 ~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I  581 (725)
                      +.+....+++||.|.+|+.|...--.+......      +...+...+++ .-.+.|.|+.+||||++||++--|.+|+|
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~------k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkV  534 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK------KVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKV  534 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccc------eeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence            345556789999999999994321111000000      01222222333 23567999999999999999999999999


Q ss_pred             EECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       582 Wdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      |-+++.+....+.||.-+|.|+.++||++.++||+.|+.|+||-++-+. |-..+.+|...|++|.|.|.. ++|++|+.
T Consensus       535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~-~~FFt~gK  612 (888)
T KOG0306|consen  535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKT-HLFFTCGK  612 (888)
T ss_pred             EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEcccc-eeEEEecC
Confidence            9999999999999999999999999999999999999999999999988 889999999999999999974 58889999


Q ss_pred             CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |+.|+-||-....++.++.. +..|++++..|+|.++++++.|..|++|.....
T Consensus       613 D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  613 DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            99999999999999999986 778999999999999999999999999987653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=7.3e-20  Score=193.10  Aligned_cols=194  Identities=16%  Similarity=0.211  Sum_probs=171.4

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++.+|+.|.++.+|                   +..+-..+.+++||.-.|+.+.|+|+...+++++.|..|+||.+..
T Consensus       232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            478999999999999                   3334467788999999999999999999999999999999999988


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      ..+......|..+|+.+..+|.++||++++.|+++.+.|++++. ++.....  ..-.+++++|||||- +|++|..|+.
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~  370 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV  370 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence            77777888999999999999999999999999999999999988 3433332  223589999999987 8899999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |+|||+.++..+..|.+ .++|..|.|+.+|.||++++.|+.|++||+|.-+.+.+|.
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            99999999998888886 6789999999999999999999999999999887766664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-20  Score=210.10  Aligned_cols=202  Identities=17%  Similarity=0.348  Sum_probs=170.7

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl  584 (725)
                      .++|++++..|.|.+|+....                ..-+.+..+..|...|+++.|++ .-.+|++||.||+|++||+
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             hhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            468999999999999954332                11134456789999999999998 4568999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      +..+...++.+....|.+|.|+| .+.+|+++...|.+.+||++.+..+...+.+|.++|.|+.|+|++. +||+|+.|+
T Consensus       164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK  242 (839)
T KOG0269|consen  164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDK  242 (839)
T ss_pred             ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCc
Confidence            99888888999999999999999 5788999999999999999999988999999999999999999755 899999999


Q ss_pred             cEEEEECCCC--eeEEEEecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeCCC
Q 004885          664 EIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       664 ~I~IwDl~t~--~~v~~~~~~~~V~sv~fspdg~~Lla~s~---Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                      .|+|||+.+.  ..+.++....+|.+|+|-|+..+.++.++   |-.|+|||++-. -+.++|..|.
T Consensus       243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence            9999999864  34556666789999999999887555443   789999999754 6677777775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.9e-20  Score=180.88  Aligned_cols=174  Identities=19%  Similarity=0.364  Sum_probs=157.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      +..+++..|.++|..+.|+-||++.++|+.|++|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      +.+++ .++.|.+|.+.|+.|.|+.+.. ++++|+.|.+|++||.+..  +++..+.. ...|.+|....  ..|++|+.
T Consensus        88 V~TGk-v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGK-VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV  163 (307)
T ss_pred             cccCe-eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence            99998 7999999999999999998866 8889999999999999864  56666654 67899998874  47889999


Q ss_pred             CCeEEEEECCCCeEEEEEeCC
Q 004885          703 ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ||+++.||++.|...-.+-||
T Consensus       164 DGtvRtydiR~G~l~sDy~g~  184 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFGH  184 (307)
T ss_pred             CCcEEEEEeecceeehhhcCC
Confidence            999999999999877666655

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=1.3e-19  Score=183.19  Aligned_cols=205  Identities=18%  Similarity=0.296  Sum_probs=165.5

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWd  583 (725)
                      ..+++.+|+.|+.|.+|+.....+-+....-+    +..+.-....-.+|.-.|.++.|-| |.-++.+++.|++++|||
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWD  130 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWD  130 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhcccee----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEee
Confidence            35799999999999999765543222111100    0111111222347889999999999 666899999999999999


Q ss_pred             CCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          584 TESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       584 l~~~~~i~~l~~H~~~V~~IafsP---d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      +.+......|+ -.+.|+.-+++|   ...++++|..|-.|++.|+..+. +.+++.||...|.+|.|+|..+++|++|+
T Consensus       131 tnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  131 TNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             cccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEeccCceeEEEecC
Confidence            99988887776 467899999999   35678888889999999999998 79999999999999999999999999999


Q ss_pred             CCCcEEEEECCCC-eeEEEEe---------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          661 NNSEIRYWSINNG-SCAGVFK---------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       661 ~Dg~I~IwDl~t~-~~v~~~~---------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .||.|++||++.. .|..++.               +.+.|..++|..++.++++++.|..+++|+.++|+
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            9999999999864 4554443               23568999999999999999999999999998874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=9e-20  Score=193.89  Aligned_cols=226  Identities=19%  Similarity=0.283  Sum_probs=183.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccC-CCceeeeEEEecCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPAST  555 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~H~  555 (725)
                      .+-.++.++++++++.               ++.+++.|++|--|....+.+.+....+..-.. .+..+++-.  +.|.
T Consensus       140 ~H~~s~~~vals~d~~---------------~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~  202 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDK---------------RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHV  202 (479)
T ss_pred             cccCcceEEEeecccc---------------ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--cccc
Confidence            3445667777777766               889999999999997766654433332210010 122222222  4899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..|.|++.|+||++||+|+.|..|.|||.++.+.+.++.+|.+.|.+++|-.....|++++.|++|++|+++... .+.+
T Consensus       203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet  281 (479)
T KOG0299|consen  203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVET  281 (479)
T ss_pred             ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence            999999999999999999999999999999999999999999999999999888899999999999999999887 6889


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      +.+|.+.|.+|+.....+ ++.+|+.|+++++|++.....+....+.+.+-|++|-.+ .++++|+.+|.|.+|++-+.+
T Consensus       282 lyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HhCCccceeeechhcccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence            999999999999887766 677777999999999965444433334668999999877 789999999999999999999


Q ss_pred             EEEEEeC
Q 004885          716 CRLKLQV  722 (725)
Q Consensus       716 ~v~~l~G  722 (725)
                      ++++.+-
T Consensus       360 plf~~~~  366 (479)
T KOG0299|consen  360 PLFTSRL  366 (479)
T ss_pred             ceeEeec
Confidence            9988763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.2e-19  Score=191.02  Aligned_cols=184  Identities=22%  Similarity=0.266  Sum_probs=158.3

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~  585 (725)
                      ..+++|+.|+.+++|+....                   .....+.+|++.|.|.+|+| .+.+++|||+||+|++||++
T Consensus       124 t~l~s~sDd~v~k~~d~s~a-------------------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  124 TMLVSGSDDKVVKYWDLSTA-------------------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             eEEEecCCCceEEEEEcCCc-------------------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            47788989999999944222                   23567889999999999999 56689999999999999998


Q ss_pred             CC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          586 SF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       586 ~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .. ..+..+ .|..+|..|.|-|.+..|++++ ...|+|||+.++...+..+..|...|+|+++..++. -|++++-|+.
T Consensus       185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~  261 (487)
T KOG0310|consen  185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRH  261 (487)
T ss_pred             cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccc
Confidence            86 555555 4899999999999999999987 457999999987756666666999999999999887 4559999999


Q ss_pred             EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      |++||+.+.+.+..++..++|.+|+.+|++..+++|.++|.+.+-+..
T Consensus       262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhh
Confidence            999999999999999999999999999999999999999998887543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.8e-18  Score=169.19  Aligned_cols=228  Identities=17%  Similarity=0.229  Sum_probs=179.2

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      .+.+..+..+.|+|.|.               +.++|+..++.++...++-.+.+....    ..+.......+.-+.|.
T Consensus        29 l~dsqairav~fhp~g~---------------lyavgsnskt~ric~yp~l~~~r~~he----a~~~pp~v~~kr~khhk   89 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGG---------------LYAVGSNSKTFRICAYPALIDLRHAHE----AAKQPPSVLCKRNKHHK   89 (350)
T ss_pred             ecchhheeeEEecCCCc---------------eEEeccCCceEEEEccccccCcccccc----cccCCCeEEeeeccccC
Confidence            34556778888888886               889999999999986555443322111    11112223345567899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWD  625 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-----i~~l~~H~~~V~~IafsPd----~~~Lasgs-~DgtIrvWD  625 (725)
                      +.|+|.+|+|+|.+|++|+.|++|++..++...+     ...|.-|.+.|.+++|-.+    +.+|++++ .|..|.+-|
T Consensus        90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td  169 (350)
T KOG0641|consen   90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD  169 (350)
T ss_pred             ccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence            9999999999999999999999999987654332     2356779999999999542    45677665 478888889


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCCEE
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRI  697 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~~L  697 (725)
                      ...+. .+..+.+|.+.|.++. +-+ ..+|++|+.|.+|++||++-..|+.++..        ...|.++++.|.|+.|
T Consensus       170 c~~g~-~~~a~sghtghilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll  246 (350)
T KOG0641|consen  170 CGRGQ-GFHALSGHTGHILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             cCCCC-cceeecCCcccEEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence            99888 7899999999998773 222 45899999999999999999999988763        2469999999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          698 LAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      +++-.|....+||++.++.+.+|..|+.
T Consensus       247 ~sg~~dssc~lydirg~r~iq~f~phsa  274 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGGRMIQRFHPHSA  274 (350)
T ss_pred             eeccCCCceEEEEeeCCceeeeeCCCcc
Confidence            9999999999999999999999998863

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.83  E-value=1e-19  Score=195.17  Aligned_cols=215  Identities=20%  Similarity=0.246  Sum_probs=162.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      ++..++++.+.|.|.               -+++|+.|-+|+.|+...-.. .           ...++.+.-  .-+..
T Consensus       166 gtk~Vsal~~Dp~Ga---------------R~~sGs~Dy~v~~wDf~gMda-s-----------~~~fr~l~P--~E~h~  216 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGA---------------RFVSGSLDYTVKFWDFQGMDA-S-----------MRSFRQLQP--CETHQ  216 (641)
T ss_pred             CceEEEEeeecCCCc---------------eeeeccccceEEEEecccccc-c-----------chhhhccCc--ccccc
Confidence            555667777777776               779999999999995533210 0           111222222  22345


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE------------eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW  624 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~------------l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvW  624 (725)
                      |.++.|++.|..|++.+....++|+|-+....+..            -++|...++|.+|+|. ...|+||+.||++|||
T Consensus       217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW  296 (641)
T ss_pred             cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence            99999999999888888888999999776554433            2589999999999995 6679999999999999


Q ss_pred             ECCCCCeeeEEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE--e--c--CCCeEEEEEecC
Q 004885          625 DTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--C--QSGATQMRFQPR  693 (725)
Q Consensus       625 Dl~~~~~~l~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~--~--~--~~~V~sv~fspd  693 (725)
                      |+.+.+.-+..|+     +..-.++.++|+|+|. +||+|+.||.|.+||.........+  +  |  ...|+||.|++|
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence            9998775455554     2345689999999998 5888899999999998653322222  2  2  347999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCC-eEEEEEeC
Q 004885          694 LGRILAAAIENYISILDVETQ-VCRLKLQV  722 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg-~~v~~l~G  722 (725)
                      |++|++-+.|++++|||++.. ++++...|
T Consensus       376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tg  405 (641)
T KOG0772|consen  376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTG  405 (641)
T ss_pred             cchhhhccCCCceeeeeccccccchhhhcC
Confidence            999999999999999999875 66665544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.83  E-value=3.2e-19  Score=178.14  Aligned_cols=210  Identities=17%  Similarity=0.312  Sum_probs=175.7

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...+..++|+.+|.               .+++|+.|+++++|.....                 .+......++|++.|
T Consensus        20 ~~~v~Sv~wn~~g~---------------~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~sv   67 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGT---------------KLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSV   67 (313)
T ss_pred             hhcceEEEEcccCc---------------eeeecccCCceEEEEecch-----------------hhhhhhcccCCCcch
Confidence            34567889999887               8999999999999954332                 222233457999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004885          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-------  630 (725)
Q Consensus       559 ~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-------  630 (725)
                      ..++|+| ...+|++++.|++|++||++.++++..... ...-..+.|+|++.+++.++.|..|...|.++..       
T Consensus        68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~  146 (313)
T KOG1407|consen   68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF  146 (313)
T ss_pred             hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence            9999988 456899999999999999999999887764 3444567899999999999999988888876422       


Q ss_pred             ---------------------------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004885          631 ---------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (725)
Q Consensus       631 ---------------------------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~  677 (725)
                                                       .++..+..|.....||.|+|+|+ .|++|+.|..+.+||+..--|++
T Consensus       147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhhe
Confidence                                             12445667999999999999999 67899999999999999999999


Q ss_pred             EEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          678 VFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       678 ~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .+.. .-+|..+.|+.+|++|++++.|..|-|=+++||..+..++.
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence            8876 77899999999999999999999999999999988887764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.83  E-value=8.9e-20  Score=191.59  Aligned_cols=195  Identities=21%  Similarity=0.264  Sum_probs=164.9

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ..+.+.+.+.|+++++|.                   ....+...++.+|++.|+++.|......+++|+.|.+|++||+
T Consensus       230 ~~~~~iAas~d~~~r~Wn-------------------vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWN-------------------VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             CCceEEeecCCCceeeee-------------------ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            334778888999999993                   3344677889999999999999887777999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      ....|.+++.. ...+.+|+..  ...+++|-+|++||+||++... ++.....+. .|++|..++++..++ +++.|.+
T Consensus       291 ~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdt  364 (459)
T KOG0288|consen  291 QKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDT  364 (459)
T ss_pred             hhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEe-eecCCCc
Confidence            99888776643 4456666665  4568889999999999999988 677776665 899999999998776 6688999


Q ss_pred             EEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          665 IRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.++|+++......|..     ...++.++|+|++.|+++|+.||.|+||++.++++...+...+
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~  429 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST  429 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence            99999999988887764     4568999999999999999999999999999999999887543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.83  E-value=1.8e-19  Score=191.77  Aligned_cols=198  Identities=17%  Similarity=0.309  Sum_probs=161.5

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~  585 (725)
                      .++++++..+.|.||+...........+         ...+-..+++|...-+.++|++... .|++|+.|++|++||+.
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence            5788999999999996554432221111         3345567889999889999999544 79999999999999996


Q ss_pred             CC-------eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885          586 SF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       586 ~~-------~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~-~~~~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      ..       .....+.+|...|.+++|++ +...|++++.|+.+.|||+++ ...+.....+|.+.|+|++|+|.+.++|
T Consensus       209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence            42       23567899999999999999 567889999999999999995 3336778889999999999999999999


Q ss_pred             EEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCCEEEE-EEcCCeEEEEECCC
Q 004885          657 CSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILA-AAIENYISILDVET  713 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~~Lla-~s~Dg~V~IwDl~t  713 (725)
                      |+|+.|++|++||+|+ ..++.++.. ...|.+|.|+|....+++ ++.|+.+.|||+..
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999999999999997 456777775 677999999998776554 56699999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=3.3e-19  Score=181.49  Aligned_cols=211  Identities=22%  Similarity=0.365  Sum_probs=170.9

Q ss_pred             cCCCCcEEEEeeCCCcEEEec------CCCCCCCCC-----ccccc------c---ccCCCcee-eeEEEecCCCCCeEE
Q 004885          502 LTDMDRFVDDGSLDDNVESFL------SPDDADPRD-----RVGRS------A---EVGKGFTF-TEFQLIPASTSKVES  560 (725)
Q Consensus       502 ~~~~~~~lasGs~D~~V~vw~------s~~~~~~~~-----~~~~~------~---~~~~~~~~-~~~~~l~~H~~~V~~  560 (725)
                      +.....++.+++-|++..+|.      .+....+.+     ...+.      .   +..++.++ .++..+.+|.+.|.|
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            334445899999999999995      222111111     11110      0   11122233 356788999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~  640 (725)
                      +.|-..|+.+++++.|.+..+||+++++.+..+.+|....+.++-+|.-+++++++.|.+.++||++..-..+..|.||.
T Consensus       278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999997666789999999


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ..|+++.|..+.+  ++++++|.+|+|||+++ ..++.++....+++.++++..+..|+.--....|++||+...
T Consensus       358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             cceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            9999999998865  67999999999999987 467888888899999999987555555555678999999743

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.82  E-value=3.6e-20  Score=183.64  Aligned_cols=217  Identities=18%  Similarity=0.210  Sum_probs=188.7

Q ss_pred             ccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE
Q 004885          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (725)
Q Consensus       471 ~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (725)
                      .|..-+.+++++..+.|++-            .+..-||.+++.|++-.+-                   .+.+..-+.+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~i------------tp~g~flisa~kd~~pmlr-------------------~g~tgdwigt   54 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPI------------TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGT   54 (334)
T ss_pred             CceEEcCCCcceeEEeccCC------------CCCceEEEEeccCCCchhc-------------------cCCCCCcEEe
Confidence            34556778889999999983            3455689999998775443                   3444566789


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      +.+|.+.|...+.+.+..+.|+++.|-+.+|||.-++..+..|. |..-|..++|+.|..+|+||+.++.+||||++.++
T Consensus        55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~  133 (334)
T KOG0278|consen   55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK  133 (334)
T ss_pred             eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence            99999999999999888889999999999999999999888885 88999999999999999999999999999999999


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .+...+.+|.+.|..+-|+.....+| +...|++||+||.+++..+.++....+|+++.++++|.+ ++.+..+.|.+||
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i-lTia~gssV~Fwd  211 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI-LTIAYGSSVKFWD  211 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE-EEEecCceeEEec
Confidence            88999999999999999998877555 668899999999999999999999999999999999655 5666778899999


Q ss_pred             CCCCeEEEEEe
Q 004885          711 VETQVCRLKLQ  721 (725)
Q Consensus       711 l~tg~~v~~l~  721 (725)
                      ..+...++.++
T Consensus       212 aksf~~lKs~k  222 (334)
T KOG0278|consen  212 AKSFGLLKSYK  222 (334)
T ss_pred             cccccceeecc
Confidence            99988887765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=4.7e-19  Score=197.10  Aligned_cols=177  Identities=26%  Similarity=0.360  Sum_probs=156.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEE--------EEeccCCCCeEEEEEcCCCCEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVK--------STLEEHTQWITDVRFSPSLSRL  612 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-----~~~i--------~~l~~H~~~V~~IafsPd~~~L  612 (725)
                      ..+.++++|.+.|..++.+||++.+++||.|++|++||..-     +...        +++ .-...|.|+.++||+++|
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~L  523 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLL  523 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEE
Confidence            45567789999999999999999999999999999999731     1111        122 235779999999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe
Q 004885          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ  691 (725)
Q Consensus       613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs  691 (725)
                      +++--|.+|+||-+++-+ ....+-||.-+|.|++.+|++. +++||+.|..|+||-++-|.|...+-. ...|.++.|.
T Consensus       524 aVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            999999999999999988 5677789999999999999988 888999999999999999999988765 6789999999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          692 PRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |....+++++.|+.|+-||-+..+++..|.||++
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~  635 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS  635 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchh
Confidence            9988899999999999999999999999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.81  E-value=3.3e-19  Score=176.82  Aligned_cols=205  Identities=17%  Similarity=0.248  Sum_probs=171.4

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      ...+.+.+.+..+.|+.|..               +|.+|+.++-+|+|+.....                  .+...+.
T Consensus        94 lhsf~hkhivk~~af~~ds~---------------~lltgg~ekllrvfdln~p~------------------App~E~~  140 (334)
T KOG0278|consen   94 LHSFEHKHIVKAVAFSQDSN---------------YLLTGGQEKLLRVFDLNRPK------------------APPKEIS  140 (334)
T ss_pred             hhhhhhhheeeeEEecccch---------------hhhccchHHHhhhhhccCCC------------------CCchhhc
Confidence            34455667778888888776               88999999999999554332                  2334567


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      +|++.|..+.|+...+.|+++.+|++||+||.++++.+..+. ....|+++.+++++++|.+ ...+.|++||..+.. .
T Consensus       141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~-~  217 (334)
T KOG0278|consen  141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG-L  217 (334)
T ss_pred             CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc-c
Confidence            999999999999999999999999999999999999998886 4678999999999886654 567889999999877 5


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      +..+.- ...|.+..++|+.. ++++|+.|..++.||..++..+..+ +. .++|.||+|+|+|..+++|+.||+|++|-
T Consensus       218 lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  218 LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             eeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            555553 34589999999985 8889999999999999999999886 43 78999999999999999999999999998


Q ss_pred             CCCCe
Q 004885          711 VETQV  715 (725)
Q Consensus       711 l~tg~  715 (725)
                      ...++
T Consensus       296 t~~~~  300 (334)
T KOG0278|consen  296 TTPGK  300 (334)
T ss_pred             ecCCC
Confidence            76553

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=2e-18  Score=176.36  Aligned_cols=196  Identities=15%  Similarity=0.282  Sum_probs=164.7

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWC  583 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~--~LaSgs~Dg~V~IWd  583 (725)
                      .+|+++||.|.+|++|+.                   ........+-.|.+.|+|+.|.++-.  .|++|+.||.|.+|+
T Consensus        53 ~~~~aSGssDetI~IYDm-------------------~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDM-------------------RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ceeEeccCCCCcEEEEec-------------------cchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            469999999999999943                   23355667778999999999998665  899999999999999


Q ss_pred             CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       584 l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      +..+.++..+++|.+.|+.|++||.+++.++.+.|+.+++||+-++......-..  ...+.|.|+|.|.++++.+.  .
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~--~  189 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGR--N  189 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEec--c
Confidence            9999999999999999999999999999999999999999999887732222222  33455999999996665543  4


Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .|-||.+.+.+....+.....+.++.|.. +.+|++|+.|+.|++||..+..+.+.|.+|.+
T Consensus       190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~  250 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHEN  250 (362)
T ss_pred             EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchh
Confidence            69999999888777776666788888765 47899999999999999999999999999964

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=2.1e-19  Score=182.69  Aligned_cols=173  Identities=27%  Similarity=0.419  Sum_probs=149.3

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCeEEEEEcCC
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS  608 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------------------~~~i~~l~~H~~~V~~IafsPd  608 (725)
                      +...+..|..++.+.+|++||.++|+|+.|..|+|+|++.                  .-.+++|..|...|+++.|||.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4456778999999999999999999999999999999861                  1357889999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cC
Q 004885          609 LSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ  682 (725)
Q Consensus       609 ~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~  682 (725)
                      ...|++++.|++|++||+.... ..+.++  .....|.++.|+|.|+ +++.|....++++||+++..|.....    +.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            9999999999999999998765 222222  2346799999999999 55577778899999999998876654    36


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.|++|.+++.+...++++.||.|+|||--+++||.+|.
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~  300 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG  300 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence            779999999999999999999999999999999999886

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.80  E-value=1e-18  Score=193.37  Aligned_cols=182  Identities=24%  Similarity=0.370  Sum_probs=154.7

Q ss_pred             EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004885          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (725)
Q Consensus       509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~  588 (725)
                      +.+|+.|..|.+|                   +.....++.++++|...|.|++...++. +++||.|.+++||-.  ++
T Consensus        74 l~~g~~D~~i~v~-------------------~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~  131 (745)
T KOG0301|consen   74 LVVGGMDTTIIVF-------------------KLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GE  131 (745)
T ss_pred             eEeecccceEEEE-------------------ecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hh
Confidence            5667788888777                   3334467788999999999999877776 999999999999975  45


Q ss_pred             EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 004885          589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (725)
Q Consensus       589 ~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw  668 (725)
                      +...+.+|...|+++++-|+. .++||+.|++|++|.-.  . ++.+|.+|...|..+++-+++.  |++|+.||.|++|
T Consensus       132 l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~-~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w  205 (745)
T KOG0301|consen  132 LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--T-LLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLW  205 (745)
T ss_pred             hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--c-hhhhhccchhheeeeEEecCCC--eEeecCCceEEEE
Confidence            666799999999999999987 88999999999999873  3 7899999999999999999976  5699999999999


Q ss_pred             ECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          669 SINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       669 Dl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++ +|.++.++.+ ...|+++....+++.+++++.|++++||+..  +|+..+.
T Consensus       206 ~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  206 DL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT  256 (745)
T ss_pred             ec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence            99 5777766654 6779999977788999999999999999987  6665553

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8e-18  Score=191.27  Aligned_cols=221  Identities=20%  Similarity=0.275  Sum_probs=172.8

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCC-CCCCCcccc-------------ccccCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGR-------------SAEVGK  541 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~-~~~~~~~~~-------------~~~~~~  541 (725)
                      +.+..-.+.++|.++|.               |+.+++.|+.|++|....+ ++++.....             ......
T Consensus        10 yaht~G~t~i~~d~~ge---------------fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE---------------FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcCCCC---------------EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeec
Confidence            44555578888888886               9999999999999966655 333332210             000000


Q ss_pred             Cce--------eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q 004885          542 GFT--------FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  613 (725)
Q Consensus       542 ~~~--------~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La  613 (725)
                      ..+        ..+-..+...+-++++++|+-+|+++|.||.|-.|++.++.+.....++++|.++|.+|.|+|++.+||
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA  154 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA  154 (933)
T ss_pred             cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence            000        011112333457799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCCeeeEEEec--------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---C
Q 004885          614 TSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---Q  682 (725)
Q Consensus       614 sgs~DgtIrvWDl~~~~~~l~~~~~--------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~  682 (725)
                      +.+.||.|+|||+.++. +..++.+        ....+..++|+|++..+++.+. |++|++|+..++.....+..   .
T Consensus       155 vss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~we~~f~Lr~~~~s  232 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGWELQFKLRDKLSS  232 (933)
T ss_pred             EEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCCceeheeecccccc
Confidence            99999999999999876 3433332        1355788999999886765554 89999999999988888764   4


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          683 SGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ..+..+.|+|+|.||++++.||.|.|||+++
T Consensus       233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            4589999999999999999999999999994

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=2.3e-18  Score=189.33  Aligned_cols=222  Identities=17%  Similarity=0.309  Sum_probs=184.8

Q ss_pred             cccCCCCCeeEEEEecCCCccccc--------------cCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTS--------------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~--------------~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~  539 (725)
                      ..+.++++..+..|+.......++              ....+..+.+.+.++|.|.+|++|....+.            
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------  106 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------  106 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence            467788889999998765432211              112234566688999999999999554441            


Q ss_pred             CCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--EE--------Eec-cCCCCeEEEEEcC
Q 004885          540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--KS--------TLE-EHTQWITDVRFSP  607 (725)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~~i~f-Spdg~~LaSgs~Dg~V~IWdl~~~~~--i~--------~l~-~H~~~V~~IafsP  607 (725)
                           .-.+.++..|.+.|.|+++ -++..++|+||-|+.|+|||++++..  +.        .+. ++...|++++..+
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 1345678899999999999 77888999999999999999987622  21        223 7889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeE
Q 004885          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT  686 (725)
Q Consensus       608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~  686 (725)
                      .+..|++|+..+.|++||.++.+ .+..+.||...|.++..+++|..++ +++.||+|++||+...+|+.++.. ...|.
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             cceEEEecCcccceEEecccccc-ceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence            99999999999999999999988 6778889999999999999998555 888999999999999999999875 66799


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          687 QMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ++..+|+-.++++|+.|+.|..-|+++.
T Consensus       260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9999999999999999999999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.79  E-value=7.9e-18  Score=168.65  Aligned_cols=173  Identities=21%  Similarity=0.247  Sum_probs=150.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      .+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+++.+.++.+|++.|+||+.+-+.++++||+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEe----CCCcEEEEECC-------CCeeEEEEec-CCCeEEEEEecCCCEE
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFKC-QSGATQMRFQPRLGRI  697 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs----~Dg~I~IwDl~-------t~~~v~~~~~-~~~V~sv~fspdg~~L  697 (725)
                      + ++..++ ...+|..+.|+++|..++++.+    ..+.|.++|++       ..+++..+.. ...++.+.|.|-+.+|
T Consensus        85 k-~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 K-QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             c-EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            8 676665 4567999999999986665443    24579999998       3455666655 7789999999999999


Q ss_pred             EEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885          698 LAAAIENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                      ++|..||.|.+||+++| +.+.+-+-|.
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~  190 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHS  190 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhc
Confidence            99999999999999998 5666555554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.79  E-value=3.2e-18  Score=189.42  Aligned_cols=208  Identities=20%  Similarity=0.337  Sum_probs=166.7

Q ss_pred             ccCCCCCeeEEEEecCCCccccc------cCCccC-CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeee
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTS------APNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~------~s~~~~-~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~  547 (725)
                      ...++.+...+.|.+++..-+.+      ....+. ..+..+.+||||.++++|...+                     .
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---------------------l  132 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---------------------L  132 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh---------------------h
Confidence            44577788888898877522211      111111 2223478999999999993211                     1


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~  627 (725)
                      ...+.+|+..|.++++-|++ .++|||.|++|++|.-  ++.+.+|.+|...|..+++-++ ..|++|+.||.|++|++ 
T Consensus       133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-  207 (745)
T KOG0301|consen  133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-  207 (745)
T ss_pred             hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-
Confidence            22378999999999999987 7999999999999975  7889999999999999999876 45889999999999999 


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      +++ ++....+|...|.++...+++. ++++|++|++++||+..  .|+..+.+ ...|+++++-++ +.|++|++||.|
T Consensus       208 ~ge-~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-gDIvvg~SDG~V  282 (745)
T KOG0301|consen  208 DGE-VLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-GDIVVGGSDGRV  282 (745)
T ss_pred             cCc-eeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-CCEEEeccCceE
Confidence            455 7999999999999999666655 78899999999999987  88888887 447999998887 568899999999


Q ss_pred             EEEECCC
Q 004885          707 SILDVET  713 (725)
Q Consensus       707 ~IwDl~t  713 (725)
                      +||..+.
T Consensus       283 rVfT~~k  289 (745)
T KOG0301|consen  283 RVFTVDK  289 (745)
T ss_pred             EEEEecc
Confidence            9998764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.79  E-value=1.1e-18  Score=187.35  Aligned_cols=203  Identities=19%  Similarity=0.233  Sum_probs=158.9

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE--EecCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ--LIPAST  555 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~H~  555 (725)
                      +....++-+|+|+..              ..+.+++.|+++|+|...+..             +.  ...++  ...+..
T Consensus       267 Hia~lt~g~whP~~k--------------~~FlT~s~DgtlRiWdv~~~k-------------~q--~qVik~k~~~g~R  317 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNK--------------EEFLTCSYDGTLRIWDVNNTK-------------SQ--LQVIKTKPAGGKR  317 (641)
T ss_pred             ceeeeeccccccCcc--------------cceEEecCCCcEEEEecCCch-------------hh--eeEEeeccCCCcc
Confidence            444567777888654              356678899999999654432             01  11111  112344


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~--~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      -.|+.|+|++||++||+|+.||.|.+|+.....   ...+-..|..  .|+||.|+++|++|++-+.|.+++|||++..+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            568999999999999999999999999975532   2334467876  89999999999999999999999999999988


Q ss_pred             eeeEEEecCC--CCeEEEEEccCCCeEEEEEe------CCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885          631 YSLRTFTGHS--TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       631 ~~l~~~~~h~--~~V~sl~fsP~g~~llaSgs------~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s  701 (725)
                      .++....+..  ..-+.++|+|+.+ ++++|.      ..|.+.+||..+...+..+.. ...|..+.|+|.-+.|++++
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence            7887776543  4568899999977 777764      356799999999888888876 67799999999999999999


Q ss_pred             cCCeEEEEE
Q 004885          702 IENYISILD  710 (725)
Q Consensus       702 ~Dg~V~IwD  710 (725)
                      .||+++||=
T Consensus       477 gdG~~~vyY  485 (641)
T KOG0772|consen  477 GDGTAHVYY  485 (641)
T ss_pred             CCCceEEEE
Confidence            999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=7.1e-19  Score=184.52  Aligned_cols=176  Identities=22%  Similarity=0.371  Sum_probs=151.5

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      ..+..+...+..|++.|.-+.||++|++||+++.|.++.||.+..   .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            445567788899999999999999999999999999999998755   34578899999999999999999999999999


Q ss_pred             CeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC
Q 004885          619 RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG  695 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~  695 (725)
                      ..+++||+.++. +.+.+. +|...+.+++|.|||.. +++|+.|+.|..||++ |..+..+++  ...|.+++..+||+
T Consensus       291 e~~~lwDv~tgd-~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  291 EVLSLWDVDTGD-LRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             HheeeccCCcch-hhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc
Confidence            999999999998 444443 45678999999999985 6699999999999998 555666655  45699999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          696 RILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ++++.+.|..|++|++++..++..+
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~li  392 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLI  392 (519)
T ss_pred             EEEEEecccceeeechhhhhhhccc
Confidence            9999999999999999887555333

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=3.5e-18  Score=177.93  Aligned_cols=202  Identities=20%  Similarity=0.317  Sum_probs=156.4

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~  586 (725)
                      ++++=+..|.|.+|....--..-.....   .......+++.++.+|.+.=+.++|||- .-.|++|.--+.|++|...+
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~---~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGL---EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccc---cccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            6677777899999954332110000000   0012456788999999999999999992 23588888788999998876


Q ss_pred             CeE---EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-eeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          587 FTV---KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       587 ~~~---i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~-~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      +.-   ...|.+|+..|.++.|+|. ...|++|+.|++|+|||++.+. ......+.|.+.|+-|.|+.+-. +|++|++
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~D  322 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGD  322 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCC
Confidence            432   2346789999999999995 6789999999999999999872 23334488999999999999877 9999999


Q ss_pred             CCcEEEEECCC---CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885          662 NSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVET  713 (725)
Q Consensus       662 Dg~I~IwDl~t---~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t  713 (725)
                      ||+++|||+++   +.++..|+. ..+|++|.|+|... .|++++.|..|.|||+..
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999999985   567888886 78899999999755 566677799999999854

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=2e-18  Score=183.13  Aligned_cols=210  Identities=19%  Similarity=0.288  Sum_probs=164.0

Q ss_pred             CCCCcEEEEeeCCCcEEEecC--CCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 004885          503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKA  579 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V  579 (725)
                      ....+|+|.|.+|..|.+|+.  .+...+...++...........+.-..-.+|++.|.++.|+.+ .+.||+||.|++|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            456779999999999999943  3333333333322211111111112233479999999999875 4589999999999


Q ss_pred             EEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885          580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       580 ~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS  658 (725)
                      ++||+.++++..++..|...|.++.|+| ...+|++|+.|++|++.|++.....-..+ ...+.|..+.|.|.....+++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence            9999999999999999999999999999 47889999999999999999654222222 244789999999999888888


Q ss_pred             EeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885          659 CDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVET  713 (725)
Q Consensus       659 gs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t  713 (725)
                      +..||+|+-+|+|+ ++++.+++. ..+|.+|+++..-. .+++++.|++|++|++..
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            99999999999997 489988885 67899999987654 566777899999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.5e-17  Score=161.27  Aligned_cols=204  Identities=21%  Similarity=0.270  Sum_probs=166.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +..++-+.+|+|+|.               ++++|+.|++|++.....+.  ...+            ..-..+.-|.+.
T Consensus        88 hkgsiyc~~ws~~ge---------------liatgsndk~ik~l~fn~dt--~~~~------------g~dle~nmhdgt  138 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGE---------------LIATGSNDKTIKVLPFNADT--CNAT------------GHDLEFNMHDGT  138 (350)
T ss_pred             cCccEEEEEecCccC---------------eEEecCCCceEEEEeccccc--cccc------------CcceeeeecCCc
Confidence            344678899999998               99999999999998444332  1111            112234568899


Q ss_pred             eEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          558 VESCHFSP----DGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       558 V~~i~fSp----dg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      |.+++|-.    .+.+|++++ .|..|++-|...+.....+.+|++-|.++ ++-++-.+++|+.|.+||+||++-.. +
T Consensus       139 irdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~  216 (350)
T KOG0641|consen  139 IRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-C  216 (350)
T ss_pred             eeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-e
Confidence            99999954    345777765 47888888999999999999999999887 44468899999999999999999877 6


Q ss_pred             eEEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC
Q 004885          633 LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       633 l~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      +.++..       ..+.|.+|+..|.|+ ++++|-.|....+||++.++.+..|.. ...|.+++|+|.-.|+++++.|.
T Consensus       217 v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  217 VNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             eeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence            766542       125799999999998 889999999999999999999988865 67899999999999999999999


Q ss_pred             eEEEEECCC
Q 004885          705 YISILDVET  713 (725)
Q Consensus       705 ~V~IwDl~t  713 (725)
                      .|++-|+..
T Consensus       296 ~ikltdlqg  304 (350)
T KOG0641|consen  296 KIKLTDLQG  304 (350)
T ss_pred             eEEEeeccc
Confidence            999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=5.5e-18  Score=180.38  Aligned_cols=200  Identities=18%  Similarity=0.270  Sum_probs=172.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.+++.++|+.               |+++|+.|..|.+|                   +..+...+.++++|.+
T Consensus       200 ~h~keil~~avS~Dgk---------------ylatgg~d~~v~Iw-------------------~~~t~ehv~~~~ghr~  245 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGK---------------YLATGGRDRHVQIW-------------------DCDTLEHVKVFKGHRG  245 (479)
T ss_pred             cccceeEEEEEcCCCc---------------EEEecCCCceEEEe-------------------cCcccchhhccccccc
Confidence            3444556677777776               99999999999999                   4455577788999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|.+++|-.....|++++.|.+|+||+++....+.++.+|...|..|....-.+.+.+|+.|+++++|++...  .-..|
T Consensus       246 ~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlif  323 (479)
T KOG0299|consen  246 AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIF  323 (479)
T ss_pred             ceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeee
Confidence            9999999877778999999999999999999999999999999999998877777778889999999999543  46788


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CC--------CeEEEEEecCCCEEEEEEcC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QS--------GATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~--------~V~sv~fspdg~~Lla~s~D  703 (725)
                      .+|.+.+-|++|-.+..  |++|+.+|.|.+|++-+.+++.+...     ..        +|++++..|....+++|+.+
T Consensus       324 rg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~  401 (479)
T KOG0299|consen  324 RGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS  401 (479)
T ss_pred             eCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence            89999999999987754  67999999999999999888877752     12        78999999998899999999


Q ss_pred             CeEEEEECCCC
Q 004885          704 NYISILDVETQ  714 (725)
Q Consensus       704 g~V~IwDl~tg  714 (725)
                      |.|++|-++.+
T Consensus       402 G~vrLW~i~~g  412 (479)
T KOG0299|consen  402 GCVRLWKIEDG  412 (479)
T ss_pred             CceEEEEecCC
Confidence            99999999887

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.9e-18  Score=181.09  Aligned_cols=194  Identities=21%  Similarity=0.318  Sum_probs=159.3

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      +.|++.|+..++|.+|....+                   ..+..+.+|--.|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus        93 G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            348888889999999944333                   3455567899999999999999999999999999999762


Q ss_pred             ---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe
Q 004885          586 ---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (725)
Q Consensus       586 ---------~~~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~  654 (725)
                               +-++++.|..|.-+|+++...+.  ..+|+|++.|.++|+||+..+. .+..+. ....+++++.+|.+. 
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~-  230 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAER-  230 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEccccc-
Confidence                     34678899999999999998774  5689999999999999999987 444443 346799999999977 


Q ss_pred             EEEEEeCCCcEEEEECCCCe----------------eEEEEec-C--CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          655 LLCSCDNNSEIRYWSINNGS----------------CAGVFKC-Q--SGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       655 llaSgs~Dg~I~IwDl~t~~----------------~v~~~~~-~--~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .++.|+.+|.|.+.++....                .+..+.+ .  ..|+|++++-||..|++|+.||.|+|||+.+.+
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            55688899999998886432                2233333 2  479999999999999999999999999999988


Q ss_pred             EEEEEe
Q 004885          716 CRLKLQ  721 (725)
Q Consensus       716 ~v~~l~  721 (725)
                      |++++.
T Consensus       311 ~iRtl~  316 (476)
T KOG0646|consen  311 CIRTLQ  316 (476)
T ss_pred             HHHHHh
Confidence            887654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.77  E-value=1.1e-18  Score=183.35  Aligned_cols=211  Identities=18%  Similarity=0.283  Sum_probs=178.5

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      .+.+...+..+.|-++..               .+++|+.|..|++|....                 .....+.++.+.
T Consensus       171 ld~h~gev~~v~~l~~sd---------------tlatgg~Dr~Ik~W~v~~-----------------~k~~~~~tLaGs  218 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSD---------------TLATGGSDRIIKLWNVLG-----------------EKSELISTLAGS  218 (459)
T ss_pred             hhccccccceeEEccCcc---------------hhhhcchhhhhhhhhccc-----------------chhhhhhhhhcc
Confidence            344445566777776543               689999999999994422                 224566778888


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      .+.|+.+.|.++++++++++.|+.+++|+++......+|.+|...|+++.|.-....+++|+.|.+|++||+.+.. |..
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~k  297 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSK  297 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eec
Confidence            8999999999999999999999999999999999999999999999999998877779999999999999999866 665


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ++.. .+.+..|+..+   ..++++..|+.||+||++...++.....++.|+++..++++..|++++.|.++.++|+++.
T Consensus       298 t~l~-~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~  373 (459)
T KOG0288|consen  298 TVLP-GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK  373 (459)
T ss_pred             cccc-cccccceEecc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence            5542 23466666652   2677999999999999999999999999899999999999999999999999999999999


Q ss_pred             eEEEEEeC
Q 004885          715 VCRLKLQV  722 (725)
Q Consensus       715 ~~v~~l~G  722 (725)
                      ++++.|.+
T Consensus       374 eI~~~~sA  381 (459)
T KOG0288|consen  374 EIRQTFSA  381 (459)
T ss_pred             cEEEEeec
Confidence            98888764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=2.5e-17  Score=164.67  Aligned_cols=222  Identities=14%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCc------ccccccc--------
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR------VGRSAEV--------  539 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~------~~~~~~~--------  539 (725)
                      ....++.++.-++|+|...              ..+++.+.|++|++|+...+......      ..-.|..        
T Consensus        59 ~~~gh~~svdql~w~~~~~--------------d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~  124 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHP--------------DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG  124 (313)
T ss_pred             cccCCCcchhhheeCCCCC--------------cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe
Confidence            3444555677777777443              47888899999999965544211000      0000100        


Q ss_pred             --CCCceeeeEEEe-----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE
Q 004885          540 --GKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL  612 (725)
Q Consensus       540 --~~~~~~~~~~~l-----~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L  612 (725)
                        .+..++-..++.     ......+.-++|+-++.+++....-|+|.|......+++..+..|...+.||.|+|+|++|
T Consensus       125 ~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf  204 (313)
T KOG1407|consen  125 NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF  204 (313)
T ss_pred             cCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE
Confidence              000111111110     1122334555555555544444445566666655666677778999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec
Q 004885          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP  692 (725)
Q Consensus       613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp  692 (725)
                      ++|+.|..+.+||++.-- |++.+..+.-+|..|.|+-+|+ +|++++.|..|-|-++++|..+..+.+.++...|+|+|
T Consensus       205 A~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHP  282 (313)
T KOG1407|consen  205 ATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHP  282 (313)
T ss_pred             eeccccceeeccChhHhh-hheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeeccCCceeEEecC
Confidence            999999999999999876 8999999999999999999998 88999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEcC---------CeEEEEEC
Q 004885          693 RLGRILAAAIE---------NYISILDV  711 (725)
Q Consensus       693 dg~~Lla~s~D---------g~V~IwDl  711 (725)
                      ....|+.++.|         |+|+||-+
T Consensus       283 k~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  283 KRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             CCceeeEEecCCCCccccccceeEEecC
Confidence            97777766663         45666644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=4.2e-19  Score=196.86  Aligned_cols=180  Identities=22%  Similarity=0.407  Sum_probs=160.8

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      +..+.+|++|+.||+|++|+..                   ..+.++++.+|...+..+.|+|-+.++|+|+.|+-+++|
T Consensus        79 ~~~E~LlaagsasgtiK~wDle-------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLE-------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW  139 (825)
T ss_pred             CcchhhhcccccCCceeeeehh-------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence            3344589999999999999443                   335667889999999999999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D  662 (725)
                      |++...|.+++.+|...|.+++|+|+|+++++++.|.+++|||+..++ .+..|..|.+.|.++.|+|.. .++++|+.|
T Consensus       140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d  217 (825)
T KOG0267|consen  140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPLE-VLLAPGSSD  217 (825)
T ss_pred             hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccCchh-hhhccCCCC
Confidence            999888999999999999999999999999999999999999999888 789999999999999999984 589999999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC
Q 004885          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      ++|++||+++...+...+. ..+|.+.+|+|++..+++|..+
T Consensus       218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999888887776 6789999999998776665443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=7.1e-18  Score=171.85  Aligned_cols=194  Identities=19%  Similarity=0.343  Sum_probs=163.8

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++.+++.|.+.++|....                   ...+..+.+|.+.|+||.|++.+.++++++.|++..||..
T Consensus       159 tqpi~gtASADhTA~iWs~Es-------------------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  159 TQPICGTASADHTARIWSLES-------------------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             CCcceeecccccceeEEeecc-------------------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            344889999999999994332                   3567788999999999999999999999999999999941


Q ss_pred             ------C------------------------------C----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          585 ------E------------------------------S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       585 ------~------------------------------~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                            .                              +    ..++..|++|.+.|.++.|-..+..++++++|.+..+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence                  0                              0    01345678999999999999999999999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      |++++. .+..+.||....+.++-+|..+ ++++.+.|.+.++||++.. ..+..|.+ ...|+++.|..+ ..+++++.
T Consensus       300 DVEtge-~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD  376 (481)
T KOG0300|consen  300 DVETGE-VVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD  376 (481)
T ss_pred             eeccCc-eeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC
Confidence            999998 8999999999999999999976 8889999999999999842 34566665 677999999987 67889999


Q ss_pred             CCeEEEEECCCC-eEEEEE
Q 004885          703 ENYISILDVETQ-VCRLKL  720 (725)
Q Consensus       703 Dg~V~IwDl~tg-~~v~~l  720 (725)
                      |.+|+|||+++- ..+.++
T Consensus       377 DrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             CceEEEeeeccccCcceee
Confidence            999999999874 344443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=6.4e-18  Score=167.46  Aligned_cols=198  Identities=18%  Similarity=0.249  Sum_probs=159.4

Q ss_pred             CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCC
Q 004885          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD  576 (725)
Q Consensus       499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~D  576 (725)
                      ...++-...-|++++.|+.|++|.....                .....+.+|.+|.++|.-++|..  -|.+||+|++|
T Consensus        16 da~lDyygkrlATcsSD~tVkIf~v~~n----------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen   16 DAQLDYYGKRLATCSSDGTVKIFEVRNN----------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             HhhhhhhcceeeeecCCccEEEEEEcCC----------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence            3445566678999999999999944333                12356788999999999999965  79999999999


Q ss_pred             CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEcc
Q 004885          577 KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHP  650 (725)
Q Consensus       577 g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP  650 (725)
                      |+|.||.-.+++  ....+..|...|++|+|.|.  +-.|++++.||.|.|.++++..  ........|.-.|++++|.|
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            999999987753  44566789999999999995  6678999999999999998762  23456678999999999999


Q ss_pred             C---C----------CeEEEEEeCCCcEEEEECCCCeeE--EEEe-cCCCeEEEEEecCCC----EEEEEEcCCeEEEEE
Q 004885          651 S---K----------EDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLG----RILAAAIENYISILD  710 (725)
Q Consensus       651 ~---g----------~~llaSgs~Dg~I~IwDl~t~~~v--~~~~-~~~~V~sv~fspdg~----~Lla~s~Dg~V~IwD  710 (725)
                      .   |          .+-|++|+.|..|+||+..+++.+  .++. |.+.|..++|+|.-+    +|++++.||+|.||.
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence            6   3          134789999999999999986433  3344 367799999999753    688999999999997


Q ss_pred             CC
Q 004885          711 VE  712 (725)
Q Consensus       711 l~  712 (725)
                      .+
T Consensus       240 ~~  241 (299)
T KOG1332|consen  240 KD  241 (299)
T ss_pred             ec
Confidence            65

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=5.4e-18  Score=189.51  Aligned_cols=207  Identities=15%  Similarity=0.250  Sum_probs=163.3

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ...++.+.+..+.|++...              .+|.+||-|+.|++|+....                   +...++.+
T Consensus       128 ~f~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~-------------------~S~~t~~~  174 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSK-------------------KSKSTFRS  174 (839)
T ss_pred             HhhhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeecc-------------------cccccccc
Confidence            4566888889999988554              58999999999999955443                   23345556


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ....|++|.|+| .+..|+++.+.|.|.+||++. .++...+.+|.++|.|+.|+|+..+||||+.|+.|+|||..+...
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            788899999999 677899999999999999986 456778899999999999999999999999999999999986552


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCe-eEEEEe-cCCCeEEEEEec-CCCEEEEEEcCCeE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAIENYI  706 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~-~v~~~~-~~~~V~sv~fsp-dg~~Lla~s~Dg~V  706 (725)
                      ..........+|.+|+|-|...+.|++|+  .|-.|+|||++..- +..+|. +...++.|+|.. |...+++++.|++|
T Consensus       255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence            22222334578999999999999998887  57789999998542 334554 356688899976 33467788889887


Q ss_pred             EEEECCC
Q 004885          707 SILDVET  713 (725)
Q Consensus       707 ~IwDl~t  713 (725)
                      ..-.+++
T Consensus       335 ~qh~~kn  341 (839)
T KOG0269|consen  335 LQHLFKN  341 (839)
T ss_pred             HHhhhhc
Confidence            6554443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.76  E-value=1.3e-17  Score=177.46  Aligned_cols=215  Identities=14%  Similarity=0.189  Sum_probs=174.9

Q ss_pred             cccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE
Q 004885          470 SRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ  549 (725)
Q Consensus       470 s~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (725)
                      ............++++.|+|...             ..++++|..-|.|-+|+....               ......+.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~  228 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVY  228 (498)
T ss_pred             eecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCC---------------CCccCceE
Confidence            33455556677899999999554             248999999999999966311               11223456


Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      .+..|+..|.++.|+| +...|++.|+||+|++-|++...  .+..+......+.++.|+.+...++.+..=|.+.+||+
T Consensus       229 ~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~  308 (498)
T KOG4328|consen  229 LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL  308 (498)
T ss_pred             EeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence            6779999999999999 55689999999999999998743  33333334567888899888777888877779999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--e---eEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S---CAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~---~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      ++++.....+.-|...|.+|+++|..+++|++|+.|++++|||++.-  +   .+..+.|...|.+++|+|.+..|++.+
T Consensus       309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~  388 (498)
T KOG4328|consen  309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC  388 (498)
T ss_pred             ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence            99886677778888899999999999999999999999999999852  2   366777788999999999999999999


Q ss_pred             cCCeEEEEECC
Q 004885          702 IENYISILDVE  712 (725)
Q Consensus       702 ~Dg~V~IwDl~  712 (725)
                      .|+.|+|||..
T Consensus       389 ~D~~IRv~dss  399 (498)
T KOG4328|consen  389 QDNEIRVFDSS  399 (498)
T ss_pred             cCCceEEeecc
Confidence            99999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2.6e-17  Score=168.24  Aligned_cols=195  Identities=21%  Similarity=0.335  Sum_probs=162.1

Q ss_pred             EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004885          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (725)
Q Consensus       509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~  588 (725)
                      +++|++...|--|......+       ........++.....+.+|.+.|+|+++  ++.++|+||.|-+|+|||+....
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~-------~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPK-------GCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCcc-------ccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence            45677777776664322211       1112234566777888999999999999  58999999999999999999988


Q ss_pred             EEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       589 ~i~~l~~H~~~V~~IafsPd~~--~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      .+..+..|.+.|+++.|.++..  .|++|+.||.|.+|+...-. ++.++++|.+.|+.|+.+|.++ +..+.+.|+.++
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr  152 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR  152 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence            8889999999999999999754  89999999999999999875 8999999999999999999988 667888899999


Q ss_pred             EEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       667 IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .||+-+|+.-..+......+.|.|+|.|.++++++. +.|-||-+++-.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~  200 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS  200 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHh
Confidence            999999888777776667777999999998877765 458899887654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.3e-17  Score=165.29  Aligned_cols=189  Identities=20%  Similarity=0.336  Sum_probs=153.9

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLW  582 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IW  582 (725)
                      .+.+|+++++|++|.+|..                 .+-.+........|...|++|+|.|.  |-.||+++.||+|.|.
T Consensus        69 ~G~iLAScsYDgkVIiWke-----------------~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKE-----------------ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             cCcEeeEeecCceEEEEec-----------------CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            3469999999999999932                 22255666667789999999999994  5589999999999999


Q ss_pred             ECCCC---eEEEEeccCCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCeee-EEEecCCCCeE
Q 004885          583 CTESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVM  644 (725)
Q Consensus       583 dl~~~---~~i~~l~~H~~~V~~IafsPd---~-----------~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h~~~V~  644 (725)
                      ++++.   ...++...|.-.|++++|.|.   +           ++|++|+.|..|+||+.++....+ .++.+|.+.|.
T Consensus       132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             EEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence            88753   334556789999999999995   4           579999999999999999865333 44899999999


Q ss_pred             EEEEccCC---CeEEEEEeCCCcEEEEECCCC------eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          645 SLDFHPSK---EDLLCSCDNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       645 sl~fsP~g---~~llaSgs~Dg~I~IwDl~t~------~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .++|.|.-   ...+++|+.||+|.||-.+..      +++..|  ...+..+.|+..|..|++++.|+.|.+|.-.
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            99999973   457899999999999987632      222222  4679999999999999999999999999654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3e-17  Score=167.57  Aligned_cols=207  Identities=16%  Similarity=0.156  Sum_probs=163.9

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i  561 (725)
                      ..++.|++-|.               +++.|..||.|.+|                   +-.++..-+.+.+|..+|+|+
T Consensus        26 a~~~~Fs~~G~---------------~lAvGc~nG~vvI~-------------------D~~T~~iar~lsaH~~pi~sl   71 (405)
T KOG1273|consen   26 AECCQFSRWGD---------------YLAVGCANGRVVIY-------------------DFDTFRIARMLSAHVRPITSL   71 (405)
T ss_pred             cceEEeccCcc---------------eeeeeccCCcEEEE-------------------EccccchhhhhhccccceeEE
Confidence            67888998887               99999999999999                   444555667788999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe-----------------------------------------
Q 004885          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-----------------------------------------  600 (725)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V-----------------------------------------  600 (725)
                      +||+||++|+|+|.|..|.+||+..+.+++.+.- .++|                                         
T Consensus        72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~  150 (405)
T KOG1273|consen   72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG  150 (405)
T ss_pred             EecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence            9999999999999999999999988766554321 1111                                         


Q ss_pred             ------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-
Q 004885          601 ------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-  672 (725)
Q Consensus       601 ------~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-  672 (725)
                            .+..|++.|+++++|...|.+.++|.++-+ ++..++-.. ..|..+.|+..|+ +|+.-+.|+.||.|+++. 
T Consensus       151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             ccccccccccccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence                  123366677899999999999999999987 777777555 6789999999988 555667799999999862 


Q ss_pred             ------CeeEEEEe-----cCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCC
Q 004885          673 ------GSCAGVFK-----CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       673 ------~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                            +.+....+     ......+++|+.+|.|+++++. -..++||.-..|..++.|.|..|
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence                  12221111     1345788999999999988876 46799999999999999998753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=4.1e-17  Score=180.22  Aligned_cols=171  Identities=20%  Similarity=0.321  Sum_probs=149.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP---d~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      .....|.|+++||+|++||+|..-|.++||++...+....++.|...|.|+.|+-   ..++|++++.|..|+|||+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            4456799999999999999999999999999999888889999999999999976   3578999999999999999866


Q ss_pred             CeeeEEEecCCCCeEEEEEcc-------------------------------------------------CCCeEEEEEe
Q 004885          630 DYSLRTFTGHSTTVMSLDFHP-------------------------------------------------SKEDLLCSCD  660 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP-------------------------------------------------~g~~llaSgs  660 (725)
                      ...+.++.+|...|++|.|.-                                                 ..+ ++++++
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c  615 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC  615 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe
Confidence            656667777777777777643                                                 333 566888


Q ss_pred             CCCcEEEEECCCCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          661 NNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .|+.|+|||+.+++.+..|++    .+....+..+|.|-||++.+.|.++.|||..+|+|+.++.||.
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence            899999999999999999996    3567888999999999999999999999999999999999996

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.74  E-value=1.4e-15  Score=159.76  Aligned_cols=194  Identities=15%  Similarity=0.160  Sum_probs=144.8

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg-~V~IWdl~~  586 (725)
                      ++++++.|+.|++|+....                   +.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+
T Consensus        87 l~~~~~~~~~l~~~d~~~~-------------------~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETR-------------------KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             EEEEcCCCCeEEEEECCCC-------------------eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            3445566888999944221                   22223322 23468899999999999988775 567889988


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEecCC-------CCeEEEEEccCCCeEEEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~h~-------~~V~sl~fsP~g~~llaS  658 (725)
                      ++.+..+.. ...+.+++|+|++.+|+++ ..++.|++||++++. ++..+..+.       .....++|+|+++.++++
T Consensus       147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            777655432 3456789999999988654 469999999999876 445443221       123568899999977776


Q ss_pred             EeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885          659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ...++.|.+||+++++.+..+.....+.+++|+|++.+|++++ .++.|.|||+++++++.+++..
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            6667789999999988887766667899999999999988875 5899999999999999988753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=5.5e-17  Score=179.55  Aligned_cols=191  Identities=19%  Similarity=0.274  Sum_probs=157.4

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      .|+. +.+..|.+|....+.                 ...+..+  +...|+++.|+++|.+|++|..+|.|.|||..+.
T Consensus       190 ~laV-alg~~vylW~~~s~~-----------------v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~  249 (484)
T KOG0305|consen  190 VLAV-ALGQSVYLWSASSGS-----------------VTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ  249 (484)
T ss_pred             eEEE-EecceEEEEecCCCc-----------------eEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence            4444 366789999543331                 1222222  3788999999999999999999999999999999


Q ss_pred             eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       588 ~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      +.+..+.+ |...|.+++|.  ...+.+|+.|+.|..+|++.....+.++.+|...|..+.|++++. .+++|+.|+.|.
T Consensus       250 k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~  326 (484)
T KOG0305|consen  250 KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVF  326 (484)
T ss_pred             cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceE
Confidence            99999998 99999999997  678999999999999999998855566889999999999999988 788999999999


Q ss_pred             EEECCCCeeEEEEe-cCCCeEEEEEecCCCE-EEEEEc--CCeEEEEECCCCeEEEEEe
Q 004885          667 YWSINNGSCAGVFK-CQSGATQMRFQPRLGR-ILAAAI--ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       667 IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~-Lla~s~--Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |||.....++..+. +...|..++|+|--.- |++|+.  |+.|++||..+|+++..+.
T Consensus       327 Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd  385 (484)
T KOG0305|consen  327 IWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD  385 (484)
T ss_pred             eccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence            99997666655554 5788999999997554 555443  8999999999998887654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=4.4e-17  Score=177.28  Aligned_cols=210  Identities=15%  Similarity=0.255  Sum_probs=171.3

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .+....+++++.|+.+++|+..+.           .......++.+.++++|.++|.|+++.+++..+++|+.||+|+.|
T Consensus       303 ~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  303 HPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             CCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            455568999999999999976331           112456678999999999999999999999999999999999999


Q ss_pred             ECCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-------------------
Q 004885          583 CTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-------------------  633 (725)
Q Consensus       583 dl~~----------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-------------------  633 (725)
                      ++..          .....++.||...|+.+++++....|++|+.||++++|+......|+                   
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~  451 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR  451 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence            6531          13346788999999999999999999999999999999875433100                   


Q ss_pred             ------------------------EEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885          634 ------------------------RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-  681 (725)
Q Consensus       634 ------------------------~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-  681 (725)
                                              ..+..       ....+..|.++|... +.+++..|+.|+++|..++..+..... 
T Consensus       452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~  530 (577)
T KOG0642|consen  452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAH  530 (577)
T ss_pred             hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeec
Confidence                                    00000       113366778888886 777999999999999999999887765 


Q ss_pred             CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ...++++++.|+|.+|++++.|+.|++|.+....|+..+..|.
T Consensus       531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            6789999999999999999999999999999999998887774

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.73  E-value=1e-16  Score=167.15  Aligned_cols=183  Identities=19%  Similarity=0.371  Sum_probs=141.2

Q ss_pred             EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004885          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +.+|.--+.|++|...++         .|..       ....+.+|+..|-.++|||. ...||+||.||+|+|||++.+
T Consensus       227 LlsGDc~~~I~lw~~~~g---------~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~  290 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTG---------SWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG  290 (440)
T ss_pred             cccCccccceEeeeeccC---------ceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence            455555677888833222         1111       12345579999999999995 458999999999999999986


Q ss_pred             ---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885          588 ---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       588 ---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D  662 (725)
                         .++.+ +.|.+.|+.|.|+....+|++|+.||+++|||++.-+  .++..|+-|..+|++|.|+|....+|++++.|
T Consensus       291 ~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  291 PKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             CccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence               34443 8899999999999987899999999999999998643  47889999999999999999988889899999


Q ss_pred             CcEEEEECCCCe-------------------eEEEEecCCCeEEEEEecCC-CEEEEEEcCCeEEEE
Q 004885          663 SEIRYWSINNGS-------------------CAGVFKCQSGATQMRFQPRL-GRILAAAIENYISIL  709 (725)
Q Consensus       663 g~I~IwDl~t~~-------------------~v~~~~~~~~V~sv~fspdg-~~Lla~s~Dg~V~Iw  709 (725)
                      ..|.|||+....                   ++....+...+..|.|++.. ++|++.+.|| +.||
T Consensus       370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            999999996321                   22233335668889999864 4677777777 4444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=2.5e-16  Score=161.00  Aligned_cols=207  Identities=18%  Similarity=0.301  Sum_probs=149.8

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +...+..-++.+.|++...               .|..++||+++++|.....                    ..+..-.
T Consensus         8 l~npP~d~IS~v~f~~~~~---------------~LLvssWDgslrlYdv~~~--------------------~l~~~~~   52 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSS---------------DLLVSSWDGSLRLYDVPAN--------------------SLKLKFK   52 (323)
T ss_pred             cCCCChhceeeEEEcCcCC---------------cEEEEeccCcEEEEeccch--------------------hhhhhee
Confidence            3344455677888886554               6777889999999943222                    1222235


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      |..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|..+|.||.+.+....+++|++|++|++||.++.. .+
T Consensus        53 ~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~  129 (323)
T KOG1036|consen   53 HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VV  129 (323)
T ss_pred             cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-cc
Confidence            788999999985 567999999999999999987765 455699999999999988899999999999999999643 33


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe---------------eE----------------------
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------------CA----------------------  676 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~---------------~v----------------------  676 (725)
                      ..+.. ...|.++...-  + .|+.|+.|..|.+||+++..               |+                      
T Consensus       130 ~~~d~-~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~  205 (323)
T KOG1036|consen  130 GTFDQ-GKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY  205 (323)
T ss_pred             ccccc-CceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence            33332 22566655542  2 34455556667777776321               11                      


Q ss_pred             -----------EEEecC----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          677 -----------GVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       677 -----------~~~~~~----------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                                 ..|++|          -+|++|+|+|..+.|++|++||.|.+||+.+.+.++.|.+
T Consensus       206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence                       122221          2489999999999999999999999999999887776654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.73  E-value=1.6e-15  Score=159.35  Aligned_cols=191  Identities=14%  Similarity=0.138  Sum_probs=145.5

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~  585 (725)
                      .++++++.|+.|++|.....                   +.+..+..|. .+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            46788899999999944222                   2344444443 36789999999976 566788999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-C
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S  663 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g  663 (725)
                      +++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.. .+..+.. ...+.+++|+|++..++ ++..+ .
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~  137 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN  137 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence            9888777765544 5688999999877655 568999999999866 5555542 23468899999998554 55544 4


Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+.+||.++++++..+.....+..++|+|++.+|++++ .++.|++||+++++++..+.
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence            57788999888877665556678899999999887665 48999999999998887765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-16  Score=171.11  Aligned_cols=230  Identities=15%  Similarity=0.173  Sum_probs=185.4

Q ss_pred             cCCCCCeeEEEEecCCCcccccc-----------CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCce
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSA-----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~-----------s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~  544 (725)
                      .+.+.++....|-.+|. .-.++           +........++++|+..+.|++|+..                   .
T Consensus        51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-------------------~  110 (673)
T KOG4378|consen   51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-------------------A  110 (673)
T ss_pred             eecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-------------------H
Confidence            44455666666766664 11111           11122334688999999999999432                   2


Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCE-EEEEeCCCeEE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSR-LATSSADRTVR  622 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~-Lasgs~DgtIr  622 (725)
                      ....+.+++|.+.|+|+.++-...+||+++..|-|.|..+.++....+|... ...|.-+.|+|..+. |.+++++|.|.
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            2345677899999999999999999999999999999999987777777644 345668999997665 56788999999


Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      +||+............|..+...|||+|..+.+|++.+.|..|.+||++.......+....+.+.++|.++|.+|++|..
T Consensus       191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence            99999877555666789999999999999999999999999999999998888888888899999999999999999999


Q ss_pred             CCeEEEEECCCC-eEEEEEeCCCC
Q 004885          703 ENYISILDVETQ-VCRLKLQVSHS  725 (725)
Q Consensus       703 Dg~V~IwDl~tg-~~v~~l~GH~s  725 (725)
                      .|.|..||++.- .++..+..|+.
T Consensus       271 ~G~~i~YD~R~~k~Pv~v~sah~~  294 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAPVAVRSAHDA  294 (673)
T ss_pred             CceEEEEecccCCCCceEeeeccc
Confidence            999999999865 78888888863

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.72  E-value=5.6e-16  Score=157.06  Aligned_cols=210  Identities=22%  Similarity=0.286  Sum_probs=156.6

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...++.+.|-|..+              -++.++++|.++++|                   +..++.+...++ ..+
T Consensus        99 ~Hky~iss~~WyP~Dt--------------GmFtssSFDhtlKVW-------------------DtnTlQ~a~~F~-me~  144 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDT--------------GMFTSSSFDHTLKVW-------------------DTNTLQEAVDFK-MEG  144 (397)
T ss_pred             cceeeeeeeEEeeecC--------------ceeecccccceEEEe-------------------ecccceeeEEee-cCc
Confidence            3445677788888665              267889999999999                   333444444332 356


Q ss_pred             CeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCee
Q 004885          557 KVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .|+.-+|||   ...+||+|..|-.|+++|+.++.+.+++.+|...|.+|.|+|...+ |+||+.||.||+||++....|
T Consensus       145 ~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc  224 (397)
T KOG4283|consen  145 KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC  224 (397)
T ss_pred             eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce
Confidence            788899988   3447888989999999999999999999999999999999997665 689999999999999876445


Q ss_pred             eEEEe--------------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe---c----CCCeEEEEE
Q 004885          633 LRTFT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK---C----QSGATQMRF  690 (725)
Q Consensus       633 l~~~~--------------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-~~~---~----~~~V~sv~f  690 (725)
                      .+++.              .|.+.|..++|..++.+ +++++.|..+++|+..+|+-.. .+.   +    +..+. +. 
T Consensus       225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-  301 (397)
T KOG4283|consen  225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-  301 (397)
T ss_pred             eEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-
Confidence            55443              56688999999999984 5588889999999998875322 111   1    11222 22 


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          691 QPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       691 spdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +-+...++..-.++.+.++++-.|..|+.+.+|
T Consensus       302 ~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  302 SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence            333334444455688888888888888888877

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=8.1e-16  Score=157.86  Aligned_cols=177  Identities=23%  Similarity=0.345  Sum_probs=149.8

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV  623 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrv  623 (725)
                      +..+.+....+.|.++.|+++|.++++++.|.+|+|||..+++.++++..+...|..++|......++.++.  |.+||+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            334455556788999999999999999999999999999999999999988889999999876666666665  899999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------------------
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------------  681 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----------------------  681 (725)
                      .++.+.+ .++.|.||...|.+|+.+|.++ .+++++.|++|++||++..+|...+..                      
T Consensus        85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEeecCc-eEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence            9999988 7999999999999999999986 667999999999999995544322110                      


Q ss_pred             ------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          682 ------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       682 ------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                                              ...++.|.|+|||++++.+...+.+++.|.-+|..+.+|.+|.
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~  229 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP  229 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence                                    2236778999999999999999999999999999888888775

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=2.3e-16  Score=160.68  Aligned_cols=158  Identities=16%  Similarity=0.334  Sum_probs=136.4

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885          553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       553 ~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-~~~i-~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      .-.+.|.+|+||| ...+++++|.|++||+|++.. +..+ +....|.++|.+++|+.|+..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            4557799999999 566777999999999999976 2322 345678999999999999999999999999999999998


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .  +..+..|.++|.++.|-+... .+|++|+.|++|++||.+...++.++...+.|+++..-.  ..++++..++.|.+
T Consensus       105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v  180 (347)
T KOG0647|consen  105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV  180 (347)
T ss_pred             C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence            6  778888999999999987644 377899999999999999999999999888898887654  46788888999999


Q ss_pred             EECCCC
Q 004885          709 LDVETQ  714 (725)
Q Consensus       709 wDl~tg  714 (725)
                      |+|+.+
T Consensus       181 ynL~n~  186 (347)
T KOG0647|consen  181 YNLENP  186 (347)
T ss_pred             EEcCCC
Confidence            999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.71  E-value=1.2e-16  Score=176.50  Aligned_cols=190  Identities=17%  Similarity=0.321  Sum_probs=154.2

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKA  579 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp---dg~~LaSgs~Dg~V  579 (725)
                      .+....|++|..-|+++++                   +-..+++...+++|...|.|+.||.   ..++||+++.|..|
T Consensus       468 Sp~gqhLAsGDr~GnlrVy-------------------~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI  528 (1080)
T KOG1408|consen  468 SPDGQHLASGDRGGNLRVY-------------------DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI  528 (1080)
T ss_pred             CCCcceecccCccCceEEE-------------------EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence            3444589999999999999                   3344466778889999999999986   45689999999999


Q ss_pred             EEEECCC-CeEEEEeccCCCC-------------------------------------------------eEEEEEcCCC
Q 004885          580 VLWCTES-FTVKSTLEEHTQW-------------------------------------------------ITDVRFSPSL  609 (725)
Q Consensus       580 ~IWdl~~-~~~i~~l~~H~~~-------------------------------------------------V~~IafsPd~  609 (725)
                      .|||+.. ...+.++.+|+..                                                 +++++..|+.
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~  608 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS  608 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence            9999853 2233333333333                                                 4566666666


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA  685 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V  685 (725)
                      +++++++.|+.|+|||+.+++ .++.|++   |.+....|..+|.|.++. +.+.|+++.|+|+.+++|+..+.+ ...|
T Consensus       609 k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~a-tScsdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  609 KLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLA-TSCSDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             ceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCCccEEE-EeecCCceEEEEeccchhhhhhcCcchhe
Confidence            889999999999999999988 6788875   667788899999998555 555599999999999999988876 5669


Q ss_pred             EEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          686 TQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      +.+.|.+|.++|++++.||.|.||.+..
T Consensus       687 TG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.71  E-value=7.9e-17  Score=172.42  Aligned_cols=191  Identities=18%  Similarity=0.338  Sum_probs=155.3

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      .+.+.+|+. +.|+||+.....             +......+.++ .....|++|...|||+.|++|++-.+|.|||+.
T Consensus       431 trhVyTgGk-gcVKVWdis~pg-------------~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  431 TRHVYTGGK-GCVKVWDISQPG-------------NKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             cceeEecCC-CeEEEeeccCCC-------------CCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            356777776 789999654432             11111222222 123569999999999999999999999999997


Q ss_pred             CCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          586 SFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       586 ~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      ....  ...+....-.++.++.+||.+..++|+.||.|.|||+.+.. .++.|.+|...+.||+++++|..+. +|+-|.
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGlDn  573 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGLDN  573 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCCcc
Confidence            6433  33344444568889999999999999999999999999987 7999999999999999999998665 999999


Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      +||.||++++..+.......-|.++..+|.+.+|++|-..+.|.|.....
T Consensus       574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence            99999999998887777778899999999999999999999999887754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=2.3e-16  Score=167.48  Aligned_cols=193  Identities=17%  Similarity=0.227  Sum_probs=153.0

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl  584 (725)
                      .++|++||.|.+|++|+...+                   ++..++..|.+.|.++.|+| ...+|++|++|++|.+.|.
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            358999999999999954333                   56677888999999999999 4569999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      +........-.-.+.|..++|+|. ...++++..||+|+-+|+++...++.++..|.+.|.+|++++.-+.++++++.|+
T Consensus       317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            852222111123567999999995 4567788899999999999997799999999999999999999899999999999


Q ss_pred             cEEEEECCCCeeEEEEec---CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCeEE
Q 004885          664 EIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      .|++|++.......+..+   -+...|++++|+-.+ +++|+..+.++|||+.+...+
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999999975444322222   234667778887665 455566778999999887544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=4e-17  Score=169.32  Aligned_cols=209  Identities=17%  Similarity=0.225  Sum_probs=171.2

Q ss_pred             EEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC
Q 004885          486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP  565 (725)
Q Consensus       486 ~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp  565 (725)
                      ..+.||..+++-..+.+    ..+++|+.||.|++|+.                   ....+..++++|.+.|..|++..
T Consensus        63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~  119 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ  119 (433)
T ss_pred             cccccccchhhcCcchh----hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc
Confidence            44555555555443322    46799999999999943                   23356778899999999999975


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s  645 (725)
                        ..+++++.|++|+.|-++. .+++++.+ .+.+..|+-+..+..++||+.  .|.|||..... ++..+..-...|.+
T Consensus       120 --~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  120 --TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISS  192 (433)
T ss_pred             --cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeE
Confidence              7789999999999999865 46667765 456788888877888999865  48999998766 78888877788999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                      +.|+|....+|++|..|+.|.+||++++.++..+...-..+.|||+|..-.++++..|..++.||++.- +.+..+.+|-
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv  272 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV  272 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence            999999999999999999999999999999998887788999999998777888888999999999875 6777777774

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=1.2e-16  Score=165.79  Aligned_cols=237  Identities=12%  Similarity=0.205  Sum_probs=174.4

Q ss_pred             cccCCCCCeeEEEEecCCCccccc---cCC---ccCCCCcEEEEeeCCCcEEEecCCCCC------------------CC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTS---APN---QLTDMDRFVDDGSLDDNVESFLSPDDA------------------DP  529 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~---~s~---~~~~~~~~lasGs~D~~V~vw~s~~~~------------------~~  529 (725)
                      ...+++.+..+..|+.....++..   ...   .+.-....+.+++.|++|+.|......                  ..
T Consensus        81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~  160 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNS  160 (433)
T ss_pred             hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccc
Confidence            455677777788887665322111   000   000111456677899999999633210                  00


Q ss_pred             CCcc----ccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE
Q 004885          530 RDRV----GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  604 (725)
Q Consensus       530 ~~~~----~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia  604 (725)
                      .+..    ..+|+....   .++..+.--.+.|.||.|+|-. .+|++|+.|+.|.+||++...++..+. -...-+.|+
T Consensus       161 ~FaTcGe~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Is  236 (433)
T KOG0268|consen  161 VFATCGEQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTIC  236 (433)
T ss_pred             cccccCceeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecccccee
Confidence            0111    123433322   3445555556789999999954 478888899999999999988876554 245567899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--C
Q 004885          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q  682 (725)
Q Consensus       605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~  682 (725)
                      |+|+...|++++.|..+..||++.-..++..+.+|.+.|.+|+|+|.|.. |++|+.|.+|+||.++.+.....+..  -
T Consensus       237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkRM  315 (433)
T KOG0268|consen  237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKRM  315 (433)
T ss_pred             cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhhh
Confidence            99988889999999999999999988889999999999999999999985 56999999999999998766554432  4


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          683 SGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      ..|.+|.|+.|..++++|+.|+.|++|.....+
T Consensus       316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            569999999999999999999999999876543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.4e-15  Score=151.65  Aligned_cols=201  Identities=17%  Similarity=0.305  Sum_probs=153.6

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW  582 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IW  582 (725)
                      +++-+++|+.|.+|++|.+.++               ..++......+.|.+.|..|.|.+  -|..+|+|++|++|.||
T Consensus        24 ~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   24 YGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            3348899999999999965333               346777788899999999999965  68999999999999999


Q ss_pred             ECC---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC---------------------
Q 004885          583 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD---------------------  630 (725)
Q Consensus       583 dl~---------~~~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~---------------------  630 (725)
                      .-.         ......++......|++|.|.|.  |-.|++++.||+||||+.-...                     
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            641         22345567777899999999994  7789999999999999753210                     


Q ss_pred             ----e-----------------------------------------eeEEEecCCCCeEEEEEccCC---CeEEEEEeCC
Q 004885          631 ----Y-----------------------------------------SLRTFTGHSTTVMSLDFHPSK---EDLLCSCDNN  662 (725)
Q Consensus       631 ----~-----------------------------------------~l~~~~~h~~~V~sl~fsP~g---~~llaSgs~D  662 (725)
                          .                                         .+..+.+|..+|++|+|.|.-   -+++++++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence                0                                         122234678899999999972   3478899999


Q ss_pred             CcEEEEECCCCe--------------------eEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC---CeEEE
Q 004885          663 SEIRYWSINNGS--------------------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---QVCRL  718 (725)
Q Consensus       663 g~I~IwDl~t~~--------------------~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t---g~~v~  718 (725)
                      | |+||.++...                    .+..+. |.+.|..++|.-.|..|.+++.||.|++|...-   .+|+.
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~s  327 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTS  327 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeee
Confidence            9 9999997311                    122222 256899999999998999999999999997543   25665


Q ss_pred             EEe
Q 004885          719 KLQ  721 (725)
Q Consensus       719 ~l~  721 (725)
                      .|+
T Consensus       328 v~~  330 (361)
T KOG2445|consen  328 VLK  330 (361)
T ss_pred             EEe
Confidence            554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=1.6e-15  Score=159.00  Aligned_cols=213  Identities=17%  Similarity=0.229  Sum_probs=169.1

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +...+...+-.+.|.|...              ..+++||.|.+|.+|..++..-.+..            ...+..+.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD--------------~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~g  129 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND--------------CVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYG  129 (472)
T ss_pred             CccCccccccccccCccCC--------------ceeecCCCCceEEEEECCCcccccCc------------ccceEEEee
Confidence            4444555666677777443              58999999999999987776432222            256788999


Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      |...|--+.|+|. .+.|++++.|.+|.|||+.+++.+.++. |...|+++.|+.||.+|+|.+.|+.|||||.++++ .
T Consensus       130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~  207 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-V  207 (472)
T ss_pred             cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-E
Confidence            9999999999995 4589999999999999999999988887 99999999999999999999999999999999998 5


Q ss_pred             eEEEecCCC-CeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCe---eEEEEecCCCeEEEEEecCCCEEEEEEc-CC
Q 004885          633 LRTFTGHST-TVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       633 l~~~~~h~~-~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~---~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      +..-.+|.+ .-..+.|-.++. ++.+|-   .+..|-+||..+-+   ....+....+|.---|++|...++.++. |+
T Consensus       208 v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  208 VSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             eeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence            666677765 346677888877 665543   46789999976533   3345555777888888999887766665 99


Q ss_pred             eEEEEECCCCe
Q 004885          705 YISILDVETQV  715 (725)
Q Consensus       705 ~V~IwDl~tg~  715 (725)
                      .|+.|.+....
T Consensus       287 ~IRYyEit~d~  297 (472)
T KOG0303|consen  287 SIRYFEITNEP  297 (472)
T ss_pred             ceEEEEecCCC
Confidence            99999997764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.69  E-value=1.4e-15  Score=171.59  Aligned_cols=193  Identities=22%  Similarity=0.315  Sum_probs=165.3

Q ss_pred             cCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004885          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (725)
Q Consensus       502 ~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I  581 (725)
                      +..-++|+..|...|.|.+|+...+-                ....+..-..|.++|+.++...-++.+++++.||.+++
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi----------------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf  519 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGI----------------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF  519 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCe----------------eecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence            34455688889999999999665552                11111123589999999999888889999999999999


Q ss_pred             EECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       582 Wdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      ||......+..+. -...+.++..+.....++.+..|-.|+++|+.+.. .++.|.+|...|++++|+|+|+ ++++++.
T Consensus       520 w~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~nritd~~FS~Dgr-Wlisasm  596 (910)
T KOG1539|consen  520 WDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVREFWGHGNRITDMTFSPDGR-WLISASM  596 (910)
T ss_pred             EecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhHHhhccccceeeeEeCCCCc-EEEEeec
Confidence            9999888777775 35678899999988999999999999999999988 7999999999999999999999 5558888


Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 004885          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVET  713 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D-g~V~IwDl~t  713 (725)
                      |++||+||+.++.++-.+....+++++.|+|+|.+|+++..| ..|++|.=.+
T Consensus       597 D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  597 DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            999999999999999999889999999999999999999988 7899997544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.68  E-value=2.7e-16  Score=168.36  Aligned_cols=199  Identities=16%  Similarity=0.176  Sum_probs=159.8

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      ....+-|.+|+.-.++.+|+.....                 .+....+....-..++++.+||.++.++|+.||.|.||
T Consensus       474 ~pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~vw  536 (705)
T KOG0639|consen  474 LPDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW  536 (705)
T ss_pred             cCCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence            3445567788888888999543331                 11111222333457789999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D  662 (725)
                      |+.+...++.|.+|...+.||.++++|..|.||+-|.+||.||++++.. +.. ....+.|.++.++|.++ +++.|..+
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-lqq-hdF~SQIfSLg~cP~~d-WlavGMen  613 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-LQQ-HDFSSQIFSLGYCPTGD-WLAVGMEN  613 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-hhh-hhhhhhheecccCCCcc-ceeeeccc
Confidence            9999999999999999999999999999999999999999999998763 211 12347899999999998 66789999


Q ss_pred             CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.|.|.............+...|.++.|.+.|+++++.+.|+.+..|..--|..|...+
T Consensus       614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence            99998888765555555567889999999999999999999999999988887666544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.6e-16  Score=157.40  Aligned_cols=161  Identities=23%  Similarity=0.357  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      ..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|++||+..+. ++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999998 677665


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--C----CCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q----SGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~----~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                       ..++|+.+.|+|...+.++++-.+..-.+.++..+.. ..+..  .    ....+..|++.|+++++|.+.|.+.|||.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence             4578999999998877776666666666777765221 12211  1    11233468999999999999999999999


Q ss_pred             CCCeEEEEEe
Q 004885          712 ETQVCRLKLQ  721 (725)
Q Consensus       712 ~tg~~v~~l~  721 (725)
                      +|.+|+..++
T Consensus       183 ~t~e~vas~r  192 (405)
T KOG1273|consen  183 ETLECVASFR  192 (405)
T ss_pred             chheeeeeee
Confidence            9999998876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=163.03  Aligned_cols=193  Identities=17%  Similarity=0.258  Sum_probs=160.8

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +...+-.+++++.|+-|+.               ++.+||.||.|.+|...+-.          +.........++.+..
T Consensus       118 v~~aHYQ~ITcL~fs~dgs---------------~iiTgskDg~V~vW~l~~lv----------~a~~~~~~~p~~~f~~  172 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGS---------------HIITGSKDGAVLVWLLTDLV----------SADNDHSVKPLHIFSD  172 (476)
T ss_pred             HHHhhccceeEEEEeCCCc---------------EEEecCCCccEEEEEEEeec----------ccccCCCccceeeecc
Confidence            4466777888888888776               99999999999999543332          1222335678889999


Q ss_pred             CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 004885          554 STSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-  630 (725)
Q Consensus       554 H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-  630 (725)
                      |+-+|+++...+.  ..+|+|+|.|.++++||+..+..+.++. ....|.+|+.+|-.+.+++|+.+|.|.+.++..-. 
T Consensus       173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~  251 (476)
T KOG0646|consen  173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG  251 (476)
T ss_pred             CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCc
Confidence            9999999999875  3489999999999999999999887775 36789999999999999999999999988875422 


Q ss_pred             --------------eeeEEEecCCC--CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecC
Q 004885          631 --------------YSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR  693 (725)
Q Consensus       631 --------------~~l~~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspd  693 (725)
                                    ..+..+.+|.+  .|+|++++-||. +|++|+.||.|+|||+.+..|++++. ..++|+.+.+.|-
T Consensus       252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence                          13567788988  999999999988 88899999999999999999999988 4889999998664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.67  E-value=3.9e-16  Score=163.50  Aligned_cols=163  Identities=21%  Similarity=0.381  Sum_probs=137.4

Q ss_pred             eEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCC-CCEEEEEeC
Q 004885          547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSSA  617 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~  617 (725)
                      ..-.+.+|++.|.+++|+| +...||+||+|.+|.||.+..       .+++..|.+|...|.-|.|||. .+.|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            3445679999999999999 667899999999999999854       2457789999999999999995 678899999


Q ss_pred             CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC
Q 004885          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG  695 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~  695 (725)
                      |.+|.+||+.++. .+.++. |..-|.+++|+.+|. +||+.+.|..|||||.++++.+..-..  ......+.|-.++.
T Consensus       153 Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  153 DNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             CceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            9999999999998 455555 999999999999998 788999999999999999999988754  33456677888877


Q ss_pred             EEEEEEc----CCeEEEEECCC
Q 004885          696 RILAAAI----ENYISILDVET  713 (725)
Q Consensus       696 ~Lla~s~----Dg~V~IwDl~t  713 (725)
                       +++.+.    +..|.+||-..
T Consensus       230 -i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  230 -IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             -eeeeccccccccceeccCccc
Confidence             555543    67899998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.8e-15  Score=163.66  Aligned_cols=218  Identities=14%  Similarity=0.209  Sum_probs=168.6

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVES  560 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~  560 (725)
                      +..+-|.|.+..++|++..     .+.||.+-.|++|++|+...+                  +-....+.++. ..|..
T Consensus        18 crf~d~~Ps~I~slA~s~k-----S~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~   74 (691)
T KOG2048|consen   18 CRFVDYKPSEIVSLAYSHK-----SNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIES   74 (691)
T ss_pred             EEEEeeeccceEEEEEecc-----CCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceee
Confidence            3444555655555555332     346899999999999965443                  22333444544 56999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEecC
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGH  639 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h  639 (725)
                      ++|+ ++..|++.+.+|+|..||+.+.+.+..+....+.|++++.+|..+.++.|+.||.+..+++..+.... +.+...
T Consensus        75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq  153 (691)
T KOG2048|consen   75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ  153 (691)
T ss_pred             EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc
Confidence            9999 56678888999999999999999999999999999999999999999999999988888887665222 233344


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCC----CeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS----GATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~----~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      ++.|.+|+|+|++. -+++|+.||.|++||+..+..+....     ...    -|.++.|-.+ ..|++|.+-|+|.+||
T Consensus       154 ~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD  231 (691)
T ss_pred             cceEEEEEecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence            58899999999987 45699999999999999988776332     111    2788888765 6888998899999999


Q ss_pred             CCCCeEEEEEeCCCC
Q 004885          711 VETQVCRLKLQVSHS  725 (725)
Q Consensus       711 l~tg~~v~~l~GH~s  725 (725)
                      ...+..+.++..|.+
T Consensus       232 ~~~gTLiqS~~~h~a  246 (691)
T KOG2048|consen  232 SIFGTLIQSHSCHDA  246 (691)
T ss_pred             ccCcchhhhhhhhhc
Confidence            999999988888753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.9e-16  Score=184.09  Aligned_cols=222  Identities=18%  Similarity=0.231  Sum_probs=171.1

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      +.....-..++|.+.+.+.          + -+++.|..||+|.+|+...-             ..+.....+.+...|+
T Consensus        61 ~~s~~rF~kL~W~~~g~~~----------~-GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~  116 (1049)
T KOG0307|consen   61 LQSSNRFNKLAWGSYGSHS----------H-GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHT  116 (1049)
T ss_pred             ccccccceeeeecccCCCc----------c-ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccC
Confidence            3344556778888877521          1 47899999999999944321             0223345566778899


Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe
Q 004885          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      +.|..+.|++... +||+|+.||.|.|||+...+.-.++.  .-.+.|.+++|... ...|++++.+|++.|||++..+ 
T Consensus       117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-  195 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-  195 (1049)
T ss_pred             CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-
Confidence            9999999999654 99999999999999998754433332  13567999999874 5678899999999999999886 


Q ss_pred             eeEEEecCCC--CeEEEEEccCCCeEEEEEeCCC---cEEEEECCC-CeeEEEEec-CCCeEEEEEecCC-CEEEEEEcC
Q 004885          632 SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNS---EIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL-GRILAAAIE  703 (725)
Q Consensus       632 ~l~~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg-~~Lla~s~D  703 (725)
                      .+..+..+..  .+..|.|+|++..-++++++|.   .|.+||+|. ...+.++++ ..+|.+|.|++.+ .+|++++.|
T Consensus       196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD  275 (1049)
T KOG0307|consen  196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD  275 (1049)
T ss_pred             cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC
Confidence            5666655544  4789999999887777776554   599999986 346666654 6789999999987 678888899


Q ss_pred             CeEEEEECCCCeEEEEEeC
Q 004885          704 NYISILDVETQVCRLKLQV  722 (725)
Q Consensus       704 g~V~IwDl~tg~~v~~l~G  722 (725)
                      +.|.+|+.+|++.+..|..
T Consensus       276 ~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  276 NRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             CCeeEecCCCceEeeecCC
Confidence            9999999999999988864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=5.1e-15  Score=157.86  Aligned_cols=208  Identities=15%  Similarity=0.246  Sum_probs=166.4

Q ss_pred             ccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE
Q 004885          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (725)
Q Consensus       471 ~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (725)
                      .....+.....++++.|+|...               ++.+++.|+++++|...                 +..-..+..
T Consensus       205 DaNa~~ps~~~I~sv~FHp~~p---------------lllvaG~d~~lrifqvD-----------------Gk~N~~lqS  252 (514)
T KOG2055|consen  205 DANAAHPSHGGITSVQFHPTAP---------------LLLVAGLDGTLRIFQVD-----------------GKVNPKLQS  252 (514)
T ss_pred             ccccCCcCcCCceEEEecCCCc---------------eEEEecCCCcEEEEEec-----------------CccChhhee
Confidence            3455555666788899998776               89999999999999442                 222234455


Q ss_pred             ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEE--EeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~-~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      +.--..+|.+++|.|+|. .+++++..+.+++||+.+.+...  ...++. ..+..+.+++++.+|+..+..|.|.|...
T Consensus       253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence            555667899999999999 99999999999999998866432  233443 35678889999999999999999999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eEEEEEecCCCEEEEEEcCC
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~--V~sv~fspdg~~Lla~s~Dg  704 (725)
                      .++. .+..++ -.+.|..++|+.+++.++++ +.+|.|.+||++...|++.|...+.  -+++|.++++.+|++|+..|
T Consensus       333 kT~e-li~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G  409 (514)
T KOG2055|consen  333 KTKE-LITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG  409 (514)
T ss_pred             hhhh-hhheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence            8887 566655 45789999999999866654 5588999999999999999987555  46778889999999999999


Q ss_pred             eEEEEECCC
Q 004885          705 YISILDVET  713 (725)
Q Consensus       705 ~V~IwDl~t  713 (725)
                      .|.|||..+
T Consensus       410 iVNIYd~~s  418 (514)
T KOG2055|consen  410 IVNIYDGNS  418 (514)
T ss_pred             eEEEeccch
Confidence            999999664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.66  E-value=1.8e-15  Score=166.47  Aligned_cols=207  Identities=15%  Similarity=0.222  Sum_probs=151.6

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .....+|+.+..||.|.+|+...-..      +       ..-..+.....|...|.++.|-|....|++++.|.++++|
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            34556899999999999994422210      0       0001234556899999999999966689999999999999


Q ss_pred             ECCCCeEEEE--eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--------------------------ee
Q 004885          583 CTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--------------------------SL  633 (725)
Q Consensus       583 dl~~~~~i~~--l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~--------------------------~l  633 (725)
                      |+++.+++..  +.+|.+.|.+++|+| |...|++|+.||.|.|||++-...                          .+
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999988877  899999999999999 567889999999999999874320                          01


Q ss_pred             EEEecCCCCeEE---EEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEe--------c----CCCeEEEEEecCCCEE
Q 004885          634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK--------C----QSGATQMRFQPRLGRI  697 (725)
Q Consensus       634 ~~~~~h~~~V~s---l~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~--------~----~~~V~sv~fspdg~~L  697 (725)
                      +....+...|.+   +.+.-|.. .||+++. |+.|+|||++...+.....        .    ..++++++.+..|.+|
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            112233334444   44455545 5667765 9999999999755443222        1    2457888888889999


Q ss_pred             EEEEcCCeEEEEECCCC--eEEEEEeCC
Q 004885          698 LAAAIENYISILDVETQ--VCRLKLQVS  723 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg--~~v~~l~GH  723 (725)
                      ++.+.|+.|++||+.+-  .++..|.||
T Consensus       287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~  314 (720)
T KOG0321|consen  287 FASCTDNSIYFYNMRSLSISPVAEFSGK  314 (720)
T ss_pred             EEEecCCcEEEEeccccCcCchhhccCc
Confidence            99999999999999864  455555554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=5.6e-16  Score=180.32  Aligned_cols=191  Identities=21%  Similarity=0.393  Sum_probs=156.9

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~  585 (725)
                      +++++|+.||.|.+|+......+             ++..    -....+.|.|++|+.. ...|++++.+|++.|||++
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP-------------~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETP-------------FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCC-------------CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            58999999999999966553211             1111    1124567999999873 4578999999999999999


Q ss_pred             CCeEEEEeccCCC--CeEEEEEcCC-CCEEEEEeCCC---eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          586 SFTVKSTLEEHTQ--WITDVRFSPS-LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       586 ~~~~i~~l~~H~~--~V~~IafsPd-~~~Lasgs~Dg---tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      ..+.+..+..|.+  .+..|+|||+ ...|++++.|.   .|.+||++....+++++.+|...|.++.|++.+..++++|
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs  272 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS  272 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence            8888877776654  4778999997 45677776654   7999999998889999999999999999999998899999


Q ss_pred             eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCC
Q 004885          660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ  714 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg  714 (725)
                      +.|+.|.+|+.++++.+..+.. ..++..+.|+|.... +++++.||.|.||.+.+.
T Consensus       273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            9999999999999999999987 678999999998874 455566999999999765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=5.7e-15  Score=151.23  Aligned_cols=229  Identities=16%  Similarity=0.209  Sum_probs=163.8

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCC-------------ccc------
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD-------------RVG------  534 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~-------------~~~------  534 (725)
                      ..-.++..++++.|+.||.               .+++++.|+.|++|...+-..-..             ++.      
T Consensus        81 ~LKgH~~~vt~~~FsSdGK---------------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~  145 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGK---------------KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK  145 (420)
T ss_pred             hhhccCCceeeeEEcCCCc---------------eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence            4456778899999999998               899999999999997655311000             000      


Q ss_pred             -cccccCCCceee--------------------eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004885          535 -RSAEVGKGFTFT--------------------EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL  593 (725)
Q Consensus       535 -~~~~~~~~~~~~--------------------~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l  593 (725)
                       -+.....+.++.                    ....-+-|...|-.+-....+++|++++.|.+|.+|+++ +..+..+
T Consensus       146 s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  146 SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence             000000111111                    111223455666667777788899999999999999998 8888888


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       594 ~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      .......+..+.+|+|++|+++++.--|+||.+--.+       ..+..++||...|..++|+++.. -+++.+.||+++
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wr  303 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWR  303 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEE
Confidence            7777778889999999999999999999999874221       23567889999999999999987 567999999999


Q ss_pred             EEECCC-------CeeEEEEe---c--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          667 YWSINN-------GSCAGVFK---C--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       667 IwDl~t-------~~~v~~~~---~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      |||++-       .+.+.+..   +  .+....+..+|.|..| +.+....|++|..++|+..-++
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~  368 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSL-AVSFGSDLKVFASEDGKDYPEL  368 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEE-EeecCCceEEEEcccCccchhH
Confidence            999862       12222221   1  3345589999997655 5566678999999988654443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.4e-15  Score=152.05  Aligned_cols=162  Identities=19%  Similarity=0.319  Sum_probs=127.0

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------------------------------EEE
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------------------------------VKS  591 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------------------------------------~i~  591 (725)
                      +..+++|.+.|+|++|+.||++|++++.|++|+||++++..                                    .++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45789999999999999999999999999999999986421                                    011


Q ss_pred             Ee-----------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          592 TL-----------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       592 ~l-----------------------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                      .+                       +.|...|..+-+.-++.+|++++.|..|.+||++ +. .+..+......-+..+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceee
Confidence            11                       1134455566666677899999999999999998 55 57777766667788899


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECC---CCe-----eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSIN---NGS-----CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~---t~~-----~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      +|+|+ ++++++-.-.|+||.+-   .|+     .+..+++ ...|+.++|+++...+++++.||+++|||..
T Consensus       237 SP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  237 SPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            99999 67777777889999863   222     2334443 6779999999999999999999999999975

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.64  E-value=1.7e-14  Score=152.00  Aligned_cols=131  Identities=26%  Similarity=0.446  Sum_probs=102.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--  585 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~--  585 (725)
                      ++++|+.|..|++|......+          ......+.....+..|...|++|.|+|+|.+||+|+.+|.|.+|-..  
T Consensus        28 ~laT~G~D~~iriW~v~r~~~----------~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEP----------GGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             ceecccCccceeeeeeeecCC----------CCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            899999999999995544321          11225677888899999999999999999999999999999999654  


Q ss_pred             ------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885          586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (725)
Q Consensus       586 ------~--------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs  649 (725)
                            +        +....++.+|...|++++|+|++.++++++.|.++++||+..+. .+..+.+|...|..++|+
T Consensus        98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen   98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeecc
Confidence                  2        34456778899999999999999999999999999999998665 333333343333333333

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.64  E-value=6.6e-15  Score=151.46  Aligned_cols=188  Identities=15%  Similarity=0.260  Sum_probs=141.2

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl  584 (725)
                      +.|++.|+.-|.|++.+.                   ........+.+|...|+.|.|+|+. ++|++||.|.+|++||+
T Consensus       105 ~p~la~~G~~GvIrVid~-------------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDV-------------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CeeEEeecceeEEEEEec-------------------chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            446666666677777632                   2224556788999999999999965 59999999999999999


Q ss_pred             CCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------------------eeE-
Q 004885          585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------SLR-  634 (725)
Q Consensus       585 ~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--------------------------~l~-  634 (725)
                      .+..++.+|   .+|...|.+|+|++++++|++|+.|.+|++|++..+..                          +.. 
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            999999887   67999999999999999999999999999999872210                          000 


Q ss_pred             EEecCC------------------------------------------------------CCeEEEE--EccCCCeEEEE
Q 004885          635 TFTGHS------------------------------------------------------TTVMSLD--FHPSKEDLLCS  658 (725)
Q Consensus       635 ~~~~h~------------------------------------------------------~~V~sl~--fsP~g~~llaS  658 (725)
                      +-.-|.                                                      ..|+-|.  |+|.++ +||.
T Consensus       246 t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~  324 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLAL  324 (385)
T ss_pred             ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhh
Confidence            000011                                                      1233332  334444 6778


Q ss_pred             EeCCCcEEEEECCCCeeE--EEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          659 CDNNSEIRYWSINNGSCA--GVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~v--~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      |...|.|.+||+++....  .++.+   ...|...+|+.|+..|++...|++|.-||..+
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            888999999999876542  22222   56699999999999999999999999999653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.8e-14  Score=162.72  Aligned_cols=180  Identities=17%  Similarity=0.278  Sum_probs=141.0

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .+.+.+++.||.|-.|++....+                   ......+++|.++|.++.|+|.+++||+.+-||.|+||
T Consensus       105 ~g~g~~iaagsdD~~vK~~~~~D-------------------~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen  105 SGSGKMIAAGSDDTAVKLLNLDD-------------------SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             ecCCcEEEeecCceeEEEEeccc-------------------cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            33445999999999999994433                   35667889999999999999999999999999999999


Q ss_pred             ECCCCeEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCC
Q 004885          583 CTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSK  652 (725)
Q Consensus       583 dl~~~~~i~~l~~--------H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g  652 (725)
                      |+.++.+..++.+        ....++.++|+|++..|+..+.|++|++|+..+.. ....+.  .+...+.++.|+|.|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-LQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-eheeecccccccceEEEEEcCCC
Confidence            9998887766543        14567788999998888888899999999998876 333333  234458999999998


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      . +||+++.||.|.|||+++-   .+.+....|++++|.|++..+-.....|..
T Consensus       245 ~-YiAAs~~~g~I~vWnv~t~---~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  245 K-YIAASTLDGQILVWNVDTH---ERHEFKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             c-EEeeeccCCcEEEEecccc---hhccccceeEEEecCCCCCeeEEEeecccc
Confidence            8 6678888999999999982   222224779999999997765444444433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.4e-14  Score=146.54  Aligned_cols=154  Identities=18%  Similarity=0.277  Sum_probs=133.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ..+.|.++.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++.  .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence            3567999999998889999999999999999887555445 4899999999997 4679999999999999999876  5


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ..+-.|..+|.||.+++... .+++|+.|++|++||.++..++..+.....|.++...  +..|++|+.|..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            66677999999999998755 6779999999999999987788888777789888876  45899999999999999987


Q ss_pred             C
Q 004885          714 Q  714 (725)
Q Consensus       714 g  714 (725)
                      -
T Consensus       165 ~  165 (323)
T KOG1036|consen  165 L  165 (323)
T ss_pred             c
Confidence            5

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.60  E-value=1e-13  Score=149.12  Aligned_cols=200  Identities=21%  Similarity=0.236  Sum_probs=153.8

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      .-+.++.|.++|.                +.+|..+|+|.+|..                   ...+..+...+|.+.|.
T Consensus       247 k~Vl~v~F~engd----------------viTgDS~G~i~Iw~~-------------------~~~~~~k~~~aH~ggv~  291 (626)
T KOG2106|consen  247 KFVLCVTFLENGD----------------VITGDSGGNILIWSK-------------------GTNRISKQVHAHDGGVF  291 (626)
T ss_pred             eEEEEEEEcCCCC----------------EEeecCCceEEEEeC-------------------CCceEEeEeeecCCceE
Confidence            3456677777665                678889999999922                   22234444459999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEE-----------------------------EeccCCCC
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKS-----------------------------TLEEHTQW  599 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------~i~-----------------------------~l~~H~~~  599 (725)
                      +++.-.+|.+|- |+.|.+|..||-.-.+           .++                             +..+|...
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de  370 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE  370 (626)
T ss_pred             EEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence            999999998555 9999999999832000           000                             11357788


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004885          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (725)
Q Consensus       600 V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~  679 (725)
                      ...++.+|+...++||+.|+.+++|+ + .+  +..-+-...++.|++|+|.|  .++.|...|...+.|.++...+...
T Consensus       371 lwgla~hps~~q~~T~gqdk~v~lW~-~-~k--~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~  444 (626)
T KOG2106|consen  371 LWGLATHPSKNQLLTCGQDKHVRLWN-D-HK--LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIH  444 (626)
T ss_pred             eeeEEcCCChhheeeccCcceEEEcc-C-Cc--eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEE
Confidence            89999999999999999999999999 2 22  22222334789999999998  6788999999999999997777766


Q ss_pred             ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEe
Q 004885          680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQ  721 (725)
Q Consensus       680 ~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~  721 (725)
                      .....++.|+|+|+|.+|++++.|+.|+||.+... ..+..+.
T Consensus       445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            66788999999999999999999999999998654 4443333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.60  E-value=2.7e-13  Score=144.68  Aligned_cols=177  Identities=30%  Similarity=0.451  Sum_probs=148.5

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR  622 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIr  622 (725)
                      ......+..|...|.+++|+|+++++++++. |+.+++|++.....+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            4566778899999999999999998888886 99999999999888999999999999999999887 555558999999


Q ss_pred             EEECCCCCeeeE-EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEE-ecCCCeEEEEEecCCCEEEE
Q 004885          623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       623 vWDl~~~~~~l~-~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~-~~~~~V~sv~fspdg~~Lla  699 (725)
                      +||...+. .+. .+.+|...+ ...|+|++. ++++++.|+.+++||++.... +..+ .+...+.++.|.|++..+++
T Consensus       225 ~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         225 LWDLSTGK-LLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEECCCCc-EEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            99998666 455 688888775 448999984 666899999999999987654 4444 33678999999998888888


Q ss_pred             EEcCCeEEEEECCCCeEEEEEe--CCC
Q 004885          700 AAIENYISILDVETQVCRLKLQ--VSH  724 (725)
Q Consensus       700 ~s~Dg~V~IwDl~tg~~v~~l~--GH~  724 (725)
                      ++.|+.+.+||+++........  +|.
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~  328 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHE  328 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccC
Confidence            8889889999999987777665  554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.60  E-value=2.5e-14  Score=161.52  Aligned_cols=203  Identities=14%  Similarity=0.168  Sum_probs=164.4

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      ..-++++++.-.+..++.|......-++..+...             .++.....++||+.+++|++.+.|+..|+|-+|
T Consensus       409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-------------~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-------------RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             hhhcceeEEecCcceEEEEeccCcccccEEecCc-------------cccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence            4445566666667778888665554333222211             111234568999999999999999999999999


Q ss_pred             ECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          583 CTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       583 dl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      ++.++-....+   ..|.++|++++.+--++.+++++.+|.+++||..+.. .+..+. -...+.++..+.... +++.+
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~-l~a~~  552 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSD-LLAIA  552 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhh-hhhhh
Confidence            99999888888   5899999999999888999999999999999999876 444443 335678888888766 77777


Q ss_pred             eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+|-.|+++|+.+.+.++.|.+ ...|++++|+|||++|++++.|++|++||+-++.++-.|.
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence            8899999999999999999985 7889999999999999999999999999999998887653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.58  E-value=2.5e-14  Score=158.79  Aligned_cols=210  Identities=20%  Similarity=0.302  Sum_probs=163.3

Q ss_pred             ccccccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCC-----cEEEecCCCCCCCCCccccccccCCCc
Q 004885          469 ISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-----NVESFLSPDDADPRDRVGRSAEVGKGF  543 (725)
Q Consensus       469 ~s~~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~-----~V~vw~s~~~~~~~~~~~~~~~~~~~~  543 (725)
                      +++....+.++..+.++..+|++.               ++++++...     .|++|                   ...
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gn---------------liASaCKS~~~ehAvI~lw-------------------~t~  560 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGN---------------LIASACKSSLKEHAVIRLW-------------------NTA  560 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCC---------------EEeehhhhCCccceEEEEE-------------------ecc
Confidence            445567788999999999999887               777766543     46777                   455


Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      .+..+..+.+|.-.|+-++|||||++|+++|.|.++.+|.....    ......+.|+.-|.++.|+|++.+|+|++.|+
T Consensus       561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence            66777789999999999999999999999999999999987432    12234688999999999999999999999999


Q ss_pred             eEEEEECCCC--CeeeE-EEecCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECCC-------CeeEE------EE
Q 004885          620 TVRVWDTENP--DYSLR-TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINN-------GSCAG------VF  679 (725)
Q Consensus       620 tIrvWDl~~~--~~~l~-~~~~h~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwDl~t-------~~~v~------~~  679 (725)
                      +|+||.....  .+..+ ....+...|+.++|.|.    ..++++.|-..|.|.+|....       +....      .+
T Consensus       641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~  720 (764)
T KOG1063|consen  641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI  720 (764)
T ss_pred             eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence            9999998876  32222 44567789999999874    334788899999999998651       11110      11


Q ss_pred             ecCCCeEEEEEecCC----------CEEEEEEcCCeEEEEECC
Q 004885          680 KCQSGATQMRFQPRL----------GRILAAAIENYISILDVE  712 (725)
Q Consensus       680 ~~~~~V~sv~fspdg----------~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+...|+.++|.|..          ..|++|+.|..++|+++.
T Consensus       721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  721 GPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            124568999999752          246888999999999874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.7e-14  Score=146.75  Aligned_cols=197  Identities=16%  Similarity=0.202  Sum_probs=155.1

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWd  583 (725)
                      ...++++-..+.|++|+.                   .+...+..+++|...+..++|..  ....+.+|+.||+|++||
T Consensus        40 e~~vav~lSngsv~lyd~-------------------~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD  100 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDK-------------------GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD  100 (376)
T ss_pred             ceeEEEEecCCeEEEEec-------------------cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence            356788888899999932                   23356667788888899999976  356899999999999999


Q ss_pred             CCCCeE--EEEeccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCeeeE-EEecCCCCeEEEEEccCCCeE
Q 004885          584 TESFTV--KSTLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL  655 (725)
Q Consensus       584 l~~~~~--i~~l~~H~-~~V~~IafsPd~~~Lasgs~----DgtIrvWDl~~~~~~l~-~~~~h~~~V~sl~fsP~g~~l  655 (725)
                      ++....  ...+..|. .+..|++...++..+++|..    |-.|.+||++.....++ .+..|...|++|+|+|..+.+
T Consensus       101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence            987543  33445565 56777777767788888753    67899999998875444 446799999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCC----eeEEEEecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          656 LCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t~----~~v~~~~~~~~V~sv~fspdg-~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |++|+.||-|.|||++..    .++.++.+...|.++.|..++ +.|.+-+...+..+|+++.+.++..++
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            999999999999999754    345566667789999999875 357788889999999999987665543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.57  E-value=2.6e-14  Score=156.59  Aligned_cols=157  Identities=20%  Similarity=0.353  Sum_probs=131.9

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004885          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (725)
Q Consensus       555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-------~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWD  625 (725)
                      ...|++++|.| |...||+++.||.|++|.+..+       ++..+++.|...|+++.||| -.+.|+++++|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            34599999999 7789999999999999998642       45677889999999999999 577899999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~~--~~~V~sv~fspdg~~Lla~s~  702 (725)
                      +.+.. ....+.+|.+.|.+++|+|+|+ .+++.+.||+|+||..+.+. .+..-++  ...-..|.|.-||+++++.+.
T Consensus       707 l~~~~-~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  707 LANAK-LYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             hhhhh-hhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence            99988 5778899999999999999998 77899999999999998653 3333222  344677889999999998887


Q ss_pred             C----CeEEEEECCC
Q 004885          703 E----NYISILDVET  713 (725)
Q Consensus       703 D----g~V~IwDl~t  713 (725)
                      |    ..|.+||..+
T Consensus       785 dk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  785 DKSSERQVQMYDAQT  799 (1012)
T ss_pred             cccchhhhhhhhhhh
Confidence            5    4688888765

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.57  E-value=8.7e-14  Score=141.10  Aligned_cols=202  Identities=19%  Similarity=0.327  Sum_probs=153.2

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .+.++.|.|++.               -+++- .|.+|.+|...+....   ...+..          ..-.+|....++
T Consensus       125 ~i~cvew~Pns~---------------klasm-~dn~i~l~~l~ess~~---vaev~s----------s~s~e~~~~fts  175 (370)
T KOG1007|consen  125 KINCVEWEPNSD---------------KLASM-DDNNIVLWSLDESSKI---VAEVLS----------SESAEMRHSFTS  175 (370)
T ss_pred             ceeeEEEcCCCC---------------eeEEe-ccCceEEEEcccCcch---heeecc----------cccccccceecc
Confidence            678999999776               22322 3788999966554321   111100          001125666888


Q ss_pred             EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       561 i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      -+|+|  +++.+++.+ |+++..||+++.++...+ ..|...|.+++|.|+.. +|+||+.||.|+|||.+..+.++..+
T Consensus       176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence            99999  788888875 889999999987665554 57888999999999854 67899999999999999999899999


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-----------------------------eEEEEe-cCCCeE
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------------------------CAGVFK-CQSGAT  686 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-----------------------------~v~~~~-~~~~V~  686 (725)
                      .+|.-.|++|.|+|....++.+++.|..|.+|....-.                             .+.++. +...|+
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY  334 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY  334 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence            99999999999999999899999999999999763211                             111222 356799


Q ss_pred             EEEEecCCCEEEEE-EcCCeEEEEECC
Q 004885          687 QMRFQPRLGRILAA-AIENYISILDVE  712 (725)
Q Consensus       687 sv~fspdg~~Lla~-s~Dg~V~IwDl~  712 (725)
                      +++|+....++++. +.||.|.|=.+.
T Consensus       335 ~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  335 ALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             EEeeccCCCeeEEEeccCceEEeecCC
Confidence            99999888887766 669999886654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.57  E-value=2.1e-14  Score=157.18  Aligned_cols=196  Identities=15%  Similarity=0.191  Sum_probs=146.5

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~  585 (725)
                      .-|++++.|+.|++|....+.-.            .........+.+|..+|+++.|+| -.+.|+++++|-+|++||+.
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~gl~------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANGLP------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             HHeeecccCceEEEEEeccCCCC------------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            35788899999999966554311            122345567889999999999999 45689999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeC---
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---  661 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~---  661 (725)
                      +.+....|.+|.+.|.+++|+|+|+.+++.+.||+|+||..+....++..-.+-. ..-..|.|.-+|++++|+|-+   
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence            9999999999999999999999999999999999999999998775555544322 334667888899988877752   


Q ss_pred             CCcEEEEECCCC--eeEEEEec--CCCeEEEEEecCCCEE-EEEEcCCeEEEEECCCC
Q 004885          662 NSEIRYWSINNG--SCAGVFKC--QSGATQMRFQPRLGRI-LAAAIENYISILDVETQ  714 (725)
Q Consensus       662 Dg~I~IwDl~t~--~~v~~~~~--~~~V~sv~fspdg~~L-la~s~Dg~V~IwDl~tg  714 (725)
                      ...|.+||..+-  ..+.+...  ...+.--.+++|...| ++|-.|..|.+|.+-..
T Consensus       789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            345888887653  33333322  2223333456666654 45556899999987543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.6e-13  Score=134.84  Aligned_cols=204  Identities=12%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .+..+|+++|..+|.|-++....-.....         +......+....+|.++|+.++|.  ..+|++|+ ||.|+-|
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            34456999999999999984433211110         111123445568999999999997  56777776 6999999


Q ss_pred             ECCCCeE------EEE--eccCC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc
Q 004885          583 CTESFTV------KST--LEEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (725)
Q Consensus       583 dl~~~~~------i~~--l~~H~-----~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs  649 (725)
                      ..+....      +..  ..-|.     -.|+++-..|...-+++++.|+.+..||++++. ..+++++|+..|.++.-.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeec
Confidence            7654221      111  11122     358899999987777777799999999999998 789999999999999984


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      ..... +.+|+.||++||||.++++++..++.           ...|-+++.+.|  ++ +|+....+.+|.+++.+++.
T Consensus       166 ~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-vCGgGp~lslwhLrsse~t~  241 (325)
T KOG0649|consen  166 NANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-VCGGGPKLSLWHLRSSESTC  241 (325)
T ss_pred             ccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eE-EecCCCceeEEeccCCCceE
Confidence            44443 45999999999999999999988763           123455555443  54 55566789999999886555


Q ss_pred             EE--eCC
Q 004885          719 KL--QVS  723 (725)
Q Consensus       719 ~l--~GH  723 (725)
                      .|  ++|
T Consensus       242 vfpipa~  248 (325)
T KOG0649|consen  242 VFPIPAR  248 (325)
T ss_pred             EEecccc
Confidence            54  454

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.56  E-value=8.1e-14  Score=141.32  Aligned_cols=170  Identities=21%  Similarity=0.372  Sum_probs=135.3

Q ss_pred             CceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----ccCCCCeEEEEEcC--CCCEE
Q 004885          542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL  612 (725)
Q Consensus       542 ~~~~~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l-----~~H~~~V~~IafsP--d~~~L  612 (725)
                      ..+++.+..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..+.. +..+     .+|....++-+|+|  ++..+
T Consensus       109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            34555666665 5667999999999999998876 88999999987654 3332     23566788889999  57777


Q ss_pred             EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEE
Q 004885          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRF  690 (725)
Q Consensus       613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~f  690 (725)
                      ++.+ |+++..||+++.......-..|...|..++|+|+..++|++|++||.|+|||.+. ..++..+.. ...|.+|+|
T Consensus       188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence            7664 8999999999877444555678888999999999999999999999999999986 445666654 567999999


Q ss_pred             ecCCC-EEEEEEcCCeEEEEECCC
Q 004885          691 QPRLG-RILAAAIENYISILDVET  713 (725)
Q Consensus       691 spdg~-~Lla~s~Dg~V~IwDl~t  713 (725)
                      +|... .|+++++|..|.+|...+
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccc
Confidence            99654 577888899999998754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.56  E-value=2.9e-14  Score=152.93  Aligned_cols=164  Identities=18%  Similarity=0.263  Sum_probs=137.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .-+|++......++++|+..++|+|||++...+.+.+++|...|++|.+...+.+|++++..|.|.|..+.++. ....|
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f  159 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTF  159 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cccce
Confidence            34555555555899999999999999999877888899999999999999999999999999999999999877 34455


Q ss_pred             ecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCE-EEEEEcCCeEEEEECC
Q 004885          637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~  712 (725)
                      ... ...|.-+.|+|..+.+|.+++++|.|.+||+....++..+.  |..+...|||+|.... |++.+.|..|.+||.+
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            433 34567899999999999999999999999999887777665  3678899999998775 5566889999999999


Q ss_pred             CCeEEEEEe
Q 004885          713 TQVCRLKLQ  721 (725)
Q Consensus       713 tg~~v~~l~  721 (725)
                      ..+...+|.
T Consensus       240 s~~s~~~l~  248 (673)
T KOG4378|consen  240 SQASTDRLT  248 (673)
T ss_pred             cccccceee
Confidence            876655543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.56  E-value=5.4e-14  Score=150.09  Aligned_cols=217  Identities=19%  Similarity=0.170  Sum_probs=161.5

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +.+.++..++.+.|+|...              .-+.+.|.||+|++-+...                 ..++++..++.
T Consensus       229 ~f~~hs~~Vs~l~F~P~n~--------------s~i~ssSyDGtiR~~D~~~-----------------~i~e~v~s~~~  277 (498)
T KOG4328|consen  229 LFTPHSGPVSGLKFSPANT--------------SQIYSSSYDGTIRLQDFEG-----------------NISEEVLSLDT  277 (498)
T ss_pred             EeccCCccccceEecCCCh--------------hheeeeccCceeeeeeecc-----------------hhhHHHhhcCc
Confidence            4455666677777777554              3467788999999874322                 22333444434


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-  630 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~-  630 (725)
                      ....+..+.|+.+...++.+..-|.+.+||+++... ...+.-|...|+.|+++|- ..+|+|++.|++++|||++.-. 
T Consensus       278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~  357 (498)
T KOG4328|consen  278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG  357 (498)
T ss_pred             cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence            445578889988888888888778999999988544 6677789999999999995 5678999999999999998632 


Q ss_pred             -e-eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----CCeeEEEEec---C-C--CeEEEEEecCCCEEE
Q 004885          631 -Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN----NGSCAGVFKC---Q-S--GATQMRFQPRLGRIL  698 (725)
Q Consensus       631 -~-~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~----t~~~v~~~~~---~-~--~V~sv~fspdg~~Ll  698 (725)
                       . ++.....|...|.++.|+|.+..+ ++.+.|..|+|||..    .-....++.|   . .  ......|.|+..+++
T Consensus       358 K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~  436 (498)
T KOG4328|consen  358 KASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV  436 (498)
T ss_pred             CCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEE
Confidence             1 234556799999999999999875 466669999999983    3344455554   1 1  245568999988888


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEeC
Q 004885          699 AAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++..-..|-|||-..++.++.|.+
T Consensus       437 vg~~~r~IDv~~~~~~q~v~el~~  460 (498)
T KOG4328|consen  437 VGRYPRPIDVFDGNGGQMVCELHD  460 (498)
T ss_pred             EeccCcceeEEcCCCCEEeeeccC
Confidence            888888899999999998877643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.56  E-value=5e-14  Score=155.19  Aligned_cols=200  Identities=21%  Similarity=0.256  Sum_probs=141.5

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl  584 (725)
                      +..|++.+-|.++++|+....                 .+.-...+.+|.+.|.+++|.|+.. .|++|+.||.|.|||+
T Consensus       112 e~~lVsasGDsT~r~Wdvk~s-----------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  112 ESLLVSASGDSTIRPWDVKTS-----------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ceeEEEccCCceeeeeeeccc-----------------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            357888889999999954332                 2233345779999999999999554 8899999999999998


Q ss_pred             CCCe---------------------------EEEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCCee-
Q 004885          585 ESFT---------------------------VKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENPDYS-  632 (725)
Q Consensus       585 ~~~~---------------------------~i~~l~~H~~~V~~---IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~-  632 (725)
                      +...                           .+...+.|...|..   +.+.-|...|++++. |+.|+|||+++.... 
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            5321                           11122345555555   556678888999887 999999999975421 


Q ss_pred             ------eEEEecC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec---CCCeEEEEEecCCCEEE
Q 004885          633 ------LRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC---QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       633 ------l~~~~~h---~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~---~~~V~sv~fspdg~~Ll  698 (725)
                            +..+..|   .-.+.++..+..|.+++|+|. |+.|++||+....  ++..+.+   ..--..-..+||+.+|+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence                  1112223   345788888888999998888 9999999998643  3333333   11122234689999999


Q ss_pred             EEEcCCeEEEEECCCC-eEEEEEeCC
Q 004885          699 AAAIENYISILDVETQ-VCRLKLQVS  723 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg-~~v~~l~GH  723 (725)
                      +++.|..++||.+.+- .....+.||
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~l~Gh  359 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPALLLGH  359 (720)
T ss_pred             ccCCCcceeeeeecCccCChhhhhCc
Confidence            9999999999999875 344444454

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.56  E-value=2.1e-15  Score=151.42  Aligned_cols=77  Identities=32%  Similarity=0.733  Sum_probs=64.7

Q ss_pred             CcchHHHHHHHHHHHHHhhCChHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHHHHhhhhhc----cCccchhhhhhh
Q 004885            4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART----NEKHSESAASYI   79 (725)
Q Consensus         4 ~~~~~~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~~~~~~~~~~fL~eWw~~fwd~f~a~~----~~~~s~~a~qYi   79 (725)
                      ++-.||++|..||||||++-+.+++|++|+.|..+..+ +.+-.+.+||.+|||||||+|||..    ...|+..++.+.
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            56679999999999999999999999999999986655 5677788999999999999999944    346666666655


Q ss_pred             hH
Q 004885           80 ES   81 (725)
Q Consensus        80 q~   81 (725)
                      +.
T Consensus        91 dy   92 (354)
T KOG4594|consen   91 DY   92 (354)
T ss_pred             hh
Confidence            53

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.55  E-value=2e-12  Score=138.03  Aligned_cols=198  Identities=25%  Similarity=0.406  Sum_probs=154.9

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKKAVLW  582 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~f-Spdg~-~LaSgs~-Dg~V~IW  582 (725)
                      ..+..++.|+.+.+|......                  ..+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus        78 ~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          78 ELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             cEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            377888899999999543331                  2334444433 36777777 78787 5555445 9999999


Q ss_pred             ECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          583 CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       583 dl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      |... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            9988 7888889999999999999999998888885 9999999999865 68888889999999999999875665668


Q ss_pred             CCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCC
Q 004885          661 NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQVS  723 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~-v~~l~GH  723 (725)
                      .|+.|++||...+.++. .+..+.......|++++..+++++.|+.+++||++.... +..+.+|
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH  283 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence            89999999999888777 455433332227999987888889999999999987654 4444455

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.55  E-value=7.7e-14  Score=143.35  Aligned_cols=202  Identities=15%  Similarity=0.210  Sum_probs=146.2

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEEEEEcCCCCEEEEEeCCCcE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHDKKA  579 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~i~fSpdg~~LaSgs~Dg~V  579 (725)
                      .+...++++.+.|.-|.+|++.++....             .++-+    .|-+   ...|++|+|||..|++| +..+|
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lra-------------Sy~~y----dh~de~taAhsL~Fs~DGeqlfaG-ykrci  181 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRA-------------SYRAY----DHQDEYTAAHSLQFSPDGEQLFAG-YKRCI  181 (406)
T ss_pred             CCccceeeeccccCceeeeecccccccc-------------chhhh----hhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence            4455688888899999999665542110             00000    1222   25689999999999887 56799


Q ss_pred             EEEEC-CCCeEE--EEec-----cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc
Q 004885          580 VLWCT-ESFTVK--STLE-----EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (725)
Q Consensus       580 ~IWdl-~~~~~i--~~l~-----~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP  650 (725)
                      +|||+ +.++..  ....     +..+-|.|++|+| +...+++++...++-||.-.... ++..+.+|.+.|+.++|++
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEecc
Confidence            99999 444322  1112     2367899999999 56689999999999998888777 7888899999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCC-eeEEEEecC-C-CeEEEE--EecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCC
Q 004885          651 SKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQ-S-GATQMR--FQPRLGRILAAAIENYISILDVET-QVCRLKLQVS  723 (725)
Q Consensus       651 ~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~~-~-~V~sv~--fspdg~~Lla~s~Dg~V~IwDl~t-g~~v~~l~GH  723 (725)
                      +|+.++.-+..|-.|-+||++.. .++..+..+ + .--.|-  ..|++.+|++|+.||.|++||+++ |..+..+..|
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~  339 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY  339 (406)
T ss_pred             CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence            99987755556788999999863 445455431 1 223444  468889999999999999999998 6655555444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=5.7e-14  Score=149.06  Aligned_cols=194  Identities=19%  Similarity=0.230  Sum_probs=148.4

Q ss_pred             eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE
Q 004885          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (725)
Q Consensus       483 s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~  562 (725)
                      .+++|+.+|.               .+++|+.|+++|+|.++..                   ..+.....|...|.+++
T Consensus       148 k~vaf~~~gs---------------~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~  193 (398)
T KOG0771|consen  148 KVVAFNGDGS---------------KLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLD  193 (398)
T ss_pred             eEEEEcCCCC---------------EeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccce
Confidence            6677777765               8999999999999965444                   23445567889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCe----
Q 004885          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY----  631 (725)
Q Consensus       563 fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~---~--~Lasgs~DgtIrvWDl~~~~~----  631 (725)
                      |+|||++|++-+.| ..+||+++++.++....  +....+..|.|.-++   .  .++.-...+.|+.||+..-..    
T Consensus       194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l  272 (398)
T KOG0771|consen  194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL  272 (398)
T ss_pred             eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence            99999999999999 89999999987665554  233456678888765   2  223333455677766643221    


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      ..+........|++++.+++|+ +++.|+.||.|.|++..+-+++..++.  ...|+.+.|+||.++++..+.|..+.|.
T Consensus       273 ~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  273 RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            2222223335799999999998 888999999999999999888887774  4569999999999999999999988888


Q ss_pred             ECC
Q 004885          710 DVE  712 (725)
Q Consensus       710 Dl~  712 (725)
                      .+.
T Consensus       352 ~l~  354 (398)
T KOG0771|consen  352 KLA  354 (398)
T ss_pred             EEe
Confidence            764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=8.4e-14  Score=150.90  Aligned_cols=210  Identities=19%  Similarity=0.285  Sum_probs=163.5

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-c
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P  552 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  552 (725)
                      ....+..++.++.|+.+|.               +|++||.|-.+.||                   +-+..+.++.+ .
T Consensus        45 eL~GH~GCVN~LeWn~dG~---------------lL~SGSDD~r~ivW-------------------d~~~~KllhsI~T   90 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGE---------------LLASGSDDTRLIVW-------------------DPFEYKLLHSIST   90 (758)
T ss_pred             hhccccceecceeecCCCC---------------EEeecCCcceEEee-------------------cchhcceeeeeec
Confidence            3445777899999999998               99999999999999                   33344444444 4


Q ss_pred             CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 004885          553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  619 (725)
Q Consensus       553 ~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~----------~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~Dg  619 (725)
                      +|+..|.|+.|-|  +.+++++|..|+.|+++|+..          .+....+..|...|..|+..|++ ..+.+++.||
T Consensus        91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen   91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence            8999999999999  456899999999999999974          23445667899999999999987 7889999999


Q ss_pred             eEEEEECCCCCeeeEEEec---------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------C---------
Q 004885          620 TVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------G---------  673 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~---------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------~---------  673 (725)
                      +|+-+|++.+..|-.....         ..-...++.++|...++|+.|+.|-..++||.+.        +         
T Consensus       171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~  250 (758)
T KOG1310|consen  171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD  250 (758)
T ss_pred             ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence            9999999986644332221         1234688999999999999999999999999541        1         


Q ss_pred             -eeEEEEec-------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          674 -SCAGVFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       674 -~~v~~~~~-------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                       .|+.-|..             ...++-+.|+|+|..|++.-....|++||+..++..
T Consensus       251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence             13433321             112566789999999888877788999999887543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=6.4e-13  Score=147.66  Aligned_cols=203  Identities=17%  Similarity=0.296  Sum_probs=162.5

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +.....+.+..++|.+.+                -|.+.+.+|.|.-|                   +-.+++....+..
T Consensus        64 i~g~~drsIE~L~W~e~~----------------RLFS~g~sg~i~Ew-------------------Dl~~lk~~~~~d~  108 (691)
T KOG2048|consen   64 IHGPEDRSIESLAWAEGG----------------RLFSSGLSGSITEW-------------------DLHTLKQKYNIDS  108 (691)
T ss_pred             EecCCCCceeeEEEccCC----------------eEEeecCCceEEEE-------------------ecccCceeEEecC
Confidence            333445556666666333                35666677888888                   3445567777788


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ..+.|.+++.+|.+..++.|++||.++.++...++...  .|...++.|.+++|+|++..|++|+.||.|++||+..+. 
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-  187 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ-  187 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-
Confidence            88999999999999999999999988888887766543  344456899999999999999999999999999999887 


Q ss_pred             eeEEEe--------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          632 SLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       632 ~l~~~~--------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      .+....        +...-|++|.|-.++  .+++|+..|+|.+||...+..+..+.. ...|.+++..+++.++++++.
T Consensus       188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  188 TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence            333111        123458888888665  578999999999999999999998886 778999999999999999999


Q ss_pred             CCeEEEEECCCC
Q 004885          703 ENYISILDVETQ  714 (725)
Q Consensus       703 Dg~V~IwDl~tg  714 (725)
                      |+.|.-|...+.
T Consensus       266 d~~ii~~~~~~~  277 (691)
T KOG2048|consen  266 DPKIIQYSLTTN  277 (691)
T ss_pred             CCceEEEEecCC
Confidence            999999988776

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.54  E-value=2e-13  Score=138.65  Aligned_cols=188  Identities=13%  Similarity=0.225  Sum_probs=146.0

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl  584 (725)
                      .+++.+.|.|.+..+|....+                ........+-+|...|++|+|..++. .||++|.||.||+||+
T Consensus       163 p~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            357888899999999954333                22234456779999999999998554 8999999999999999


Q ss_pred             CCCeEEEEec---cCCCCeEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          585 ESFTVKSTLE---EHTQWITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       585 ~~~~~i~~l~---~H~~~V~~IafsP-d~~~Lasgs~Dg-tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      +..+.-.++.   ....+...++|++ |-++++|-..|. .|.|.|++.+..++..+.+|.+.|+.|+|.|.....+|+|
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta  306 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA  306 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence            8755433332   2246788899988 567788876654 7999999999889999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCC------eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          660 DNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       660 s~Dg~I~IwDl~t~------~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      ++|..+.|||+..-      .++..+...+.|..+.|++...-.++.+.++.+.|.
T Consensus       307 GDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  307 GDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             CCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            99999999999752      234444457889999999765555555566666554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.53  E-value=3.3e-13  Score=138.80  Aligned_cols=219  Identities=16%  Similarity=0.223  Sum_probs=161.0

Q ss_pred             EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE
Q 004885          484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF  563 (725)
Q Consensus       484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f  563 (725)
                      -+.|+|||.               .+.+-+.|..+.+|..+.+...........    ......++..  ....|+..+|
T Consensus        54 gckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~~----~~~~~~~r~~--eg~tvydy~w  112 (406)
T KOG2919|consen   54 GCKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPLN----FSKHLSYRYQ--EGETVYDYCW  112 (406)
T ss_pred             cceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCccc----cccceeEEec--cCCEEEEEEe
Confidence            458999998               677788999999997766543322211110    0001112222  2345888888


Q ss_pred             c-------CCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 004885          564 S-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPD-  630 (725)
Q Consensus       564 S-------pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~---~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-  630 (725)
                      -       |+.+++|+.+.|.-|++||.-+++....+.+  |-   ....+++|+|||..|+.| ...+|+|||+..+. 
T Consensus       113 Ys~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  113 YSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGR  191 (406)
T ss_pred             eeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCC
Confidence            5       5778999999999999999999887766643  32   234689999999999876 57789999995443 


Q ss_pred             e-eeEEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-
Q 004885          631 Y-SLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-  702 (725)
Q Consensus       631 ~-~l~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-  702 (725)
                      . .+....     +..+.|.+++|+|....+++.++...++-||.-....++..+.. .++|+.++|+++|..|++|+. 
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            1 122222     23677999999999888999999888888988888877777665 788999999999999999987 


Q ss_pred             CCeEEEEECCCC-eEEEEEeCCC
Q 004885          703 ENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       703 Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                      |..|.+||++.. .++..|.+|.
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv  294 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHV  294 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhc
Confidence            789999999864 6666776664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.53  E-value=5.9e-14  Score=155.89  Aligned_cols=168  Identities=18%  Similarity=0.313  Sum_probs=139.4

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      .+.+++.+.||...|+|++.+|++++||+++...     .|++|+..+...+..+.+|.-.|+.++|+||+++|++.+.|
T Consensus       514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            3456778889999999999999999999997643     68999999998888999999999999999999999999999


Q ss_pred             CeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEE---EecCCCeEEEEE
Q 004885          619 RTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV---FKCQSGATQMRF  690 (725)
Q Consensus       619 gtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~---~~~~~~V~sv~f  690 (725)
                      .++.+|.......   .....+.|+.-|++++|+|++.+ |+|++.|.+|+||.....  +++..   ++....|+.++|
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~  672 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY  672 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence            9999998854432   23346789999999999999874 889999999999999877  55544   344788999998


Q ss_pred             ecCC----C-EEEEEEcCCeEEEEECC
Q 004885          691 QPRL----G-RILAAAIENYISILDVE  712 (725)
Q Consensus       691 spdg----~-~Lla~s~Dg~V~IwDl~  712 (725)
                      .|-.    . .+++|-..|.|.+|...
T Consensus       673 ~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  673 LPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eccccccccceEEEEecccEEEEEecc
Confidence            7632    2 34455557999999865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=2.8e-13  Score=137.64  Aligned_cols=216  Identities=17%  Similarity=0.248  Sum_probs=158.1

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      +.+...++.+.|.|+..+.+.          .+|++  .+..+|+|...+++ .+.....+....         .-..+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~p----------dlLAT--s~D~LRlWri~~ee-~~~~~~~~L~~~---------kns~~~  150 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYP----------DLLAT--SSDFLRLWRIGDEE-SRVELQSVLNNN---------KNSEFC  150 (364)
T ss_pred             CCCCCCccceEecCCccccCc----------chhhc--ccCeEEEEeccCcC-CceehhhhhccC---------cccccC
Confidence            344556777888887753322          35555  34689999766542 111111111111         123567


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCC
Q 004885          556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       556 ~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .++++..|+. |-++|.++|-|-+..|||++++.   ....+-.|...|++|+|...+ ..|++++.||.||+||++...
T Consensus       151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            7899999987 77899999999999999998852   456678999999999999854 578899999999999999876


Q ss_pred             eeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCC
Q 004885          631 YSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIEN  704 (725)
Q Consensus       631 ~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg  704 (725)
                      .....+...  ..+...++|++...+++++-..| ..|.|.|++. ...+..+.. .+.|+.|+|.|... +|++++.|.
T Consensus       231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            444444432  46788999999888888876544 5699999996 455666664 67899999999754 688888899


Q ss_pred             eEEEEECCC
Q 004885          705 YISILDVET  713 (725)
Q Consensus       705 ~V~IwDl~t  713 (725)
                      .+.|||+..
T Consensus       311 qaliWDl~q  319 (364)
T KOG0290|consen  311 QALIWDLQQ  319 (364)
T ss_pred             eEEEEeccc
Confidence            999999864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=1.7e-13  Score=140.83  Aligned_cols=204  Identities=19%  Similarity=0.242  Sum_probs=163.9

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      -.++++++|+.|++               .++.+.....|.+|...                ....++..+++..|...|
T Consensus        10 ~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~----------------~~~~w~~~htls~Hd~~v   58 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSML----------------GADLWEPAHTLSEHDKIV   58 (361)
T ss_pred             cCceeeeeecCCCc---------------eEEeccCCceEEEEEec----------------CCCCceeceehhhhCcce
Confidence            34678999999887               66777777778888321                122367889999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECC-C--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTE-S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S  632 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~  632 (725)
                      ++|+|+|..+.|++|+.|...+||... .  .++.-++..|...+++|.|+|..+.|++|+....|.||-++....   .
T Consensus        59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs  138 (361)
T KOG1523|consen   59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS  138 (361)
T ss_pred             eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence            999999999999999999999999983 3  345566778999999999999999999999999999998875431   1


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-----C-------------CeeEEEE-ecCCCeEEEEEecC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----N-------------GSCAGVF-KCQSGATQMRFQPR  693 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-----t-------------~~~v~~~-~~~~~V~sv~fspd  693 (725)
                      ...-+.+.+.|++++|+|++- ++++|+.|+..|||..-     .             |..+..+ ...+.|..+.|+|.
T Consensus       139 KhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  139 KHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence            233445678899999999965 88899999999998642     1             2233344 23577999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCC
Q 004885          694 LGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |..|+-.+.|.+|.+-|....
T Consensus       218 G~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CCEeeEecCCCceEEeecCCC
Confidence            999999999999999997765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=9.3e-14  Score=151.64  Aligned_cols=179  Identities=18%  Similarity=0.283  Sum_probs=147.1

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~--------~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs  616 (725)
                      |....++..|.+.|+.+.|.+....|++|++|+++++|++.        ..+++.+|.+|.++|.|+++.+++..+++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            55555888999999999999999999999999999999992        2357889999999999999999999999999


Q ss_pred             CCCeEEEEECC---------CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-E----------
Q 004885          617 ADRTVRVWDTE---------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-A----------  676 (725)
Q Consensus       617 ~DgtIrvWDl~---------~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v----------  676 (725)
                      .||+|++|++.         .+.....++.||.+.|+.++++.... .|++|+.||+||.|+...... +          
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence            99999999553         12234567889999999999999866 566999999999998764332 0          


Q ss_pred             ---------------------------------EEEec--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          677 ---------------------------------GVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       677 ---------------------------------~~~~~--------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                                                       ..+..        ...+..|.++|.....+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence                                             00000        0124567888988889999999999999999999


Q ss_pred             EEEEEeCCC
Q 004885          716 CRLKLQVSH  724 (725)
Q Consensus       716 ~v~~l~GH~  724 (725)
                      +++....|.
T Consensus       523 ~l~s~~a~~  531 (577)
T KOG0642|consen  523 ILHSMVAHK  531 (577)
T ss_pred             cchheeecc
Confidence            999888774

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=3.6e-14  Score=153.66  Aligned_cols=167  Identities=17%  Similarity=0.328  Sum_probs=137.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsP--d~~~Lasgs~DgtIr  622 (725)
                      .....+.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.++.+ .+|...|.++.|-|  +.+.+++|..|+.|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            344567899999999999999999999999999999999877777655 68999999999999  577899999999999


Q ss_pred             EEECCC---------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe---------c-C
Q 004885          623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---------C-Q  682 (725)
Q Consensus       623 vWDl~~---------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~---------~-~  682 (725)
                      |||+..         .....+.+..|...|..|+-.|+++..|.+++.||+|+-||++... |-....         . -
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999985         2235677788999999999999998899999999999999998631 111110         0 1


Q ss_pred             CCeEEEEEecCCC-EEEEEEcCCeEEEEECC
Q 004885          683 SGATQMRFQPRLG-RILAAAIENYISILDVE  712 (725)
Q Consensus       683 ~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~  712 (725)
                      -...++..+|... +|++|++|-.+++||.+
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            2357788888765 56777889999999953

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=2.1e-12  Score=129.86  Aligned_cols=156  Identities=19%  Similarity=0.294  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEec-cCCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 004885          559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW  624 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~---D-------g~V~IWdl~~-~~~i~~l~-~H~~~V~~IafsPd~~~Lasg--s~DgtIrvW  624 (725)
                      ..+.|+++|++|++-..   |       +...||.++. ...+..+. ...++|.+++|+|+++.|+++  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999987664322   2       2344554422 22333332 234579999999999987655  357799999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      |++ .. .+..+.  ...+..|.|+|+|+.+++++.  ..|.|.+||+++.+++..+++ ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GK-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-cc-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence            997 33 455553  467889999999996655442  246799999999999888875 45899999999999998875


Q ss_pred             ------CCeEEEEECCCCeEEEEE
Q 004885          703 ------ENYISILDVETQVCRLKL  720 (725)
Q Consensus       703 ------Dg~V~IwDl~tg~~v~~l  720 (725)
                            |+.++||+.. |+.+...
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEec
Confidence                  7899999985 7776654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.50  E-value=3.2e-13  Score=139.16  Aligned_cols=162  Identities=17%  Similarity=0.351  Sum_probs=135.5

Q ss_pred             ecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEe--ccCCCCeEEEEEcCC----CCEEEEEe
Q 004885          551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLATSS  616 (725)
Q Consensus       551 l~~H~~~V~~i~fSp-----dg~~LaSgs~Dg~V~IWdl~~~~---~i~~l--~~H~~~V~~IafsPd----~~~Lasgs  616 (725)
                      .+.|+.+|..++|++     +-..+|+++. ..|.||......   .+..+  ..|....+.++|+-+    ..+++.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            357889999999985     2235666654 478888765432   22222  347788899999774    34788899


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEec
Q 004885          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQP  692 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fsp  692 (725)
                      .-|.|+|.|+.+.. +...+.+|...|..|.|+|+...++++|+.|..||+|++++..|+..|.+    ...|.++.|++
T Consensus       113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            99999999999988 78999999999999999999999999999999999999999999999975    56799999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCC
Q 004885          693 RLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       693 dg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      +|.+|++++.|..|++|++...
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             CCCeeeccCCcceEEEEecChh
Confidence            9999999999999999999854

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.4e-12  Score=129.70  Aligned_cols=193  Identities=16%  Similarity=0.251  Sum_probs=143.2

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      ++++.+|+. |.|+-|.+.+.... ....+.|+........     ..---.|+++...|..+-|+.++.|+.++-||++
T Consensus        72 d~~Lls~gd-G~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE  144 (325)
T KOG0649|consen   72 DDFLLSGGD-GLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE  144 (325)
T ss_pred             hhheeeccC-ceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEEEec
Confidence            346777654 99999988766432 2333444432221111     0112358999999987777777789999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---------C-CCCeEEEEEccCCCeE
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKEDL  655 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---------h-~~~V~sl~fsP~g~~l  655 (725)
                      +++..+++++|+..|.++.-......+++|+.||++||||+++.+ ++..+..         | ...|.+++.+.+   .
T Consensus       145 ~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed---W  220 (325)
T KOG0649|consen  145 DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED---W  220 (325)
T ss_pred             CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc---e
Confidence            999999999999999999986666789999999999999999988 5555432         2 234677766544   4


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ++ |+....+.+|.++..+++..|....+|..+.|..|  .+++++..+.|.-|.+.
T Consensus       221 lv-CGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  221 LV-CGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EE-ecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence            43 44467899999999999999998899999999865  56777767777777654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.49  E-value=2.4e-14  Score=161.14  Aligned_cols=196  Identities=22%  Similarity=0.297  Sum_probs=158.4

Q ss_pred             CCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004885          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (725)
Q Consensus       499 s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~  578 (725)
                      +..++...+++.+|+.|..|++|...++                   ......+||.+.|+.++.+.+..+++++|.|+.
T Consensus       195 ca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  195 CAIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             eeeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCce
Confidence            3334445569999999999999943222                   455677899999999999998889999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-C----------------------------
Q 004885          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-P----------------------------  629 (725)
Q Consensus       579 V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~-~----------------------------  629 (725)
                      |++|.+.++.++.++.+|++.|++|+|+|-.    +.+.||++++||.+- .                            
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999999943    677899999998760 0                            


Q ss_pred             ---C----e----------------------------------------------eeEEEecCCCCeEEEEEccCCCeEE
Q 004885          630 ---D----Y----------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       630 ---~----~----------------------------------------------~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                         .    .                                              .++...+|...+..+.++|-...+.
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence               0    0                                              0111235677888899999888888


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      .+++.||.+.|||+-.|.++..+.. +..+...+|+++|..++....-|.+.|+...-++..
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            8999999999999999988877654 777889999999988877777788999876655433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1e-12  Score=140.54  Aligned_cols=167  Identities=16%  Similarity=0.246  Sum_probs=142.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~  630 (725)
                      ..+.|+|+.|+|...+|++|+.|++++||-++.  ...+..+.--..+|.+.+|+|+|. .+++++....+..||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            346799999999999999999999999999865  234445544578999999999998 89999999999999998876


Q ss_pred             e-eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          631 Y-SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       631 ~-~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      . .+....++. ..+..+..++++. +++..+..|.|.+....++..+..++..+.|..++|+.|++.|++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            2 122223333 3577788899988 667788899999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEe
Q 004885          709 LDVETQVCRLKLQ  721 (725)
Q Consensus       709 wDl~tg~~v~~l~  721 (725)
                      ||++...|+++|.
T Consensus       371 ~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  371 WNLRQNSCLHRFV  383 (514)
T ss_pred             EecCCcceEEEEe
Confidence            9999999999885

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.7e-12  Score=132.92  Aligned_cols=173  Identities=18%  Similarity=0.265  Sum_probs=130.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 004885          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWD  625 (725)
                      .+|.+-|.|+.|.+.|+++|+|+.|.+|+|||.+.    ..+...++.|.+.|..|.|.+  -|..+++|+.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47889999999999999999999999999999643    467778899999999999965  389999999999999997


Q ss_pred             CCCCC--------eeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC------eeEEEEe--------cC
Q 004885          626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG------SCAGVFK--------CQ  682 (725)
Q Consensus       626 l~~~~--------~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~------~~v~~~~--------~~  682 (725)
                      -....        ....++....+.|++|+|.|.. ...+++++.||.||||+...-      .+...+.        +.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            63211        1244566677899999999974 336789999999999987543      2333333        35


Q ss_pred             CCeEEEEEecCC---CEEEEEEcC-----CeEEEEECCCC----eEEEEEeCCC
Q 004885          683 SGATQMRFQPRL---GRILAAAIE-----NYISILDVETQ----VCRLKLQVSH  724 (725)
Q Consensus       683 ~~V~sv~fspdg---~~Lla~s~D-----g~V~IwDl~tg----~~v~~l~GH~  724 (725)
                      ....||.|+|..   .+|++|+.+     +.++||....+    ..+.+|.+|.
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            568899998753   245555443     37899976543    4556666664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.46  E-value=1.7e-12  Score=147.57  Aligned_cols=215  Identities=17%  Similarity=0.232  Sum_probs=159.3

Q ss_pred             cccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe
Q 004885          472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI  551 (725)
Q Consensus       472 ~~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l  551 (725)
                      +.+.+.....++++.|.|...              .+++.|..+|.|.+|+.....+..             ....-...
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~-------------~s~ls~~~  287 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP-------------PSGLSALE  287 (555)
T ss_pred             ceEEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC-------------Cccccccc
Confidence            445566677788888888554              588999999999999766554321             11111233


Q ss_pred             cCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe-----------------------------------------
Q 004885          552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT-----------------------------------------  588 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~-----------------------------------------  588 (725)
                      ..|..+|+.+.|..+.  .-|++++.||.|..|+++...                                         
T Consensus       288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT  367 (555)
T KOG1587|consen  288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT  367 (555)
T ss_pred             ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence            4688889999996643  348888889999999764110                                         


Q ss_pred             ----E------------------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885          589 ----V------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (725)
Q Consensus       589 ----~------------------i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl  646 (725)
                          .                  ...+..|.++|++|.++|=+..++..+.|.+|+||.......++..+..+...|+++
T Consensus       368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v  447 (555)
T KOG1587|consen  368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV  447 (555)
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee
Confidence                0                  001224678899999999666555555599999999984444788888888889999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          647 DFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      +|+|....+|++++.||.|.|||+....  ++.+.+. ....+.+.|++.|..|++|...|.|++|++..
T Consensus       448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9999999999999999999999997543  3333333 45567788899889999999999999999964

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.7e-12  Score=143.43  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeee
Q 004885          558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL  633 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs-~Dg~V~IW--dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l  633 (725)
                      +.+++|+|||+.|+.++ .++.+.||  |+.++. +..+..+...+.++.|+||++.|+.++ .++.+.||+++......
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            44789999999888764 67866555  665554 445666777788999999999776554 57888888876543223


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC--
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV--  711 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl--  711 (725)
                      ..+ .+..  .++.|+|+|+.+++++ .+ .|.+||+.++.+...... ....++.|+|+|++|++++.++.+.+|++  
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~-~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMIN-GD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEc-CC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            333 3433  4678999999665544 34 466799998876543322 23467889999999999999998888876  


Q ss_pred             CCCeEEEEEeCCCC
Q 004885          712 ETQVCRLKLQVSHS  725 (725)
Q Consensus       712 ~tg~~v~~l~GH~s  725 (725)
                      .+|++++.+.+|.+
T Consensus       403 ~~G~~~~~l~~~~g  416 (429)
T PRK01742        403 ADGRFKARLPGSDG  416 (429)
T ss_pred             CCCCceEEccCCCC
Confidence            46889999988753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=1e-11  Score=130.09  Aligned_cols=155  Identities=17%  Similarity=0.266  Sum_probs=128.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENP  629 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~---H~~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~  629 (725)
                      ...|.+|.++  .++|+++-++. |+|||+++.+.++++..   +...+.++.+++.+.+|+--+  ..|.|.|||+.+-
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            4568888884  56777777664 99999999998887753   445566666666677887543  3689999999998


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~-I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      . ++..+..|.+.+.+++|+++|. ++|++++.|+ ||||++.+|..+..|+.   ...|.+++|+|++.+|.+.+..++
T Consensus       164 ~-~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  164 Q-PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             e-eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence            7 7899999999999999999998 8899998886 89999999999999985   345899999999999988888999


Q ss_pred             EEEEECCCC
Q 004885          706 ISILDVETQ  714 (725)
Q Consensus       706 V~IwDl~tg  714 (725)
                      |+||.+++-
T Consensus       242 VHiFKL~~~  250 (391)
T KOG2110|consen  242 VHIFKLEKV  250 (391)
T ss_pred             EEEEEeccc
Confidence            999998764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.44  E-value=1.7e-12  Score=130.45  Aligned_cols=158  Identities=20%  Similarity=0.279  Sum_probs=126.4

Q ss_pred             CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       553 ~H~~~V~~i~fSp-dg~--~LaSgs~Dg~V~IWdl~~~~----------~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      +..+.|.|..|.- +++  +|++|.++|.|.+||+.++.          .+.....|..+|.++.|.+.-..=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            3457788888644 344  56788889999999998873          3344567999999999998666667888888


Q ss_pred             eEEEEECCCCC--eeeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC
Q 004885          620 TVRVWDTENPD--YSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG  695 (725)
Q Consensus       620 tIrvWDl~~~~--~~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~  695 (725)
                      .+..|.+....  ..++.+ .-..-.|..+.+.||++ ++++++.|+.||||..++..++..++. ..+|.+++|+|+.+
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence            89999887542  112211 11224588999999987 999999999999999999999999886 67899999999999


Q ss_pred             EEEEEEcCCeEEEEEC
Q 004885          696 RILAAAIENYISILDV  711 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl  711 (725)
                      .+++++.|..|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999987

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.43  E-value=1.9e-12  Score=136.82  Aligned_cols=164  Identities=20%  Similarity=0.328  Sum_probs=137.4

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       555 ~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~---------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      ..+|..+.|.++.. +||||+.|..|+||-+...         +....+..|...|++|.|+|+++.|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45699999998766 9999999999999987431         2345678899999999999999999999999999999


Q ss_pred             ECC--------C-----C--CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEE
Q 004885          625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM  688 (725)
Q Consensus       625 Dl~--------~-----~--~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv  688 (725)
                      -..        +     .  -.....+.+|...|..++|+|++. ++++++.|..+++||+..|..+..+.. ...|..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            765        2     1  123456778999999999999988 777999999999999999999888865 5669999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885          689 RFQPRLGRILAAAIENYISILDVETQVCRLK  719 (725)
Q Consensus       689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~  719 (725)
                      +|.|.+.++++-+.|...+++.+.....++.
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence            9999999999999999888888776554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.43  E-value=1e-11  Score=137.07  Aligned_cols=199  Identities=16%  Similarity=0.287  Sum_probs=148.0

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +.+++..++|.|||...             +++   .+..+-+|+..++                   ..+.++++|.+.
T Consensus        11 ~~hci~d~afkPDGsqL-------------~lA---Ag~rlliyD~ndG-------------------~llqtLKgHKDt   55 (1081)
T KOG1538|consen   11 AEHCINDIAFKPDGTQL-------------ILA---AGSRLLVYDTSDG-------------------TLLQPLKGHKDT   55 (1081)
T ss_pred             cccchheeEECCCCceE-------------EEe---cCCEEEEEeCCCc-------------------ccccccccccce
Confidence            44578889999998711             333   3456778854444                   467789999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--------EEEe---------------------------c--cCCCCe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--------KSTL---------------------------E--EHTQWI  600 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--------i~~l---------------------------~--~H~~~V  600 (725)
                      |+|++|+.||+++|+|+.|+.|.||+-.-...        +...                           .  .....|
T Consensus        56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~  135 (1081)
T KOG1538|consen   56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI  135 (1081)
T ss_pred             EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence            99999999999999999999999997532111        1100                           0  123567


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeEEEecCCCCeEEEEEccCC----CeEEEEEeCCCcEEEEECCCCee
Q 004885          601 TDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGSC  675 (725)
Q Consensus       601 ~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~l~~~~~h~~~V~sl~fsP~g----~~llaSgs~Dg~I~IwDl~t~~~  675 (725)
                      .+++|..||.+|+.|-.||+|.+-+..... ..+..-.+..++|++|+|+|..    ..+++..+...++.+|.+. |+.
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~  214 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQ  214 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-cee
Confidence            889999999999999999999988654433 1222333567899999999963    3478888888899988887 555


Q ss_pred             EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          676 AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       676 v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      +..-+. .-...|+.+.++|.+++.|++|+.+++|..+
T Consensus       215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             ecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence            543332 4567899999999999999999999999754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.5e-12  Score=142.69  Aligned_cols=178  Identities=18%  Similarity=0.266  Sum_probs=129.3

Q ss_pred             ceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCC-
Q 004885          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR-  619 (725)
Q Consensus       543 ~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~--~Lasgs~Dg-  619 (725)
                      +.......+++|++.|+||...|.|.+|++|+.||+|+||.+.++.|++++.- .+.|.||+|+|.++  .|+++-.+. 
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCce
Confidence            44455667899999999999999999999999999999999999999887653 44677777777433  232222111 


Q ss_pred             --------------------------------------------------------------------------------
Q 004885          620 --------------------------------------------------------------------------------  619 (725)
Q Consensus       620 --------------------------------------------------------------------------------  619 (725)
                                                                                                      
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                                                                                            


Q ss_pred             eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll  698 (725)
                      .|.|+++.... ....|....+.|.++.|+|...++|++.  -..|+|||+.....+..+.. ...|..++.+|.|..|+
T Consensus       547 ~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  547 SVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             eEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence            22222222211 1122223446799999999988776544  46799999998777766654 56799999999999999


Q ss_pred             EEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885          699 AAAIENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                      +++.|+.+..||+.-+ ++.+++.-|.
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~  650 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHE  650 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhh
Confidence            9999999999999755 5666665553

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.41  E-value=1.2e-13  Score=155.56  Aligned_cols=120  Identities=23%  Similarity=0.464  Sum_probs=112.6

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      +.++.+.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.||.+.|++++.+.+..++++++.|..|++|-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      +..+. ++..+.+|++.|++|+|+|..     +.+.||++++||.+
T Consensus       261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence            99988 899999999999999999973     66779999999987

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.40  E-value=4.2e-12  Score=137.95  Aligned_cols=103  Identities=23%  Similarity=0.299  Sum_probs=92.9

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      ++..+.--.+.|..++|+|||++||+.+.||.+||||..+.+.+..++..-+...||+|+||+++|++|+.|.-|.||.+
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            33344444568999999999999999999999999999998888888888899999999999999999999999999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEcc
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHP  650 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP  650 (725)
                      .... .+..-.+|.++|..|+|+|
T Consensus       362 ~erR-VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  362 EERR-VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccce-EEEeccccccceeeEeecc
Confidence            9887 7888899999999999997

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.39  E-value=6.3e-11  Score=128.02  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=128.0

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      ...+|.+....++.+|+.+.+++|+.|+.|++|+  ..+.+.+.. -..++.|++|+|.+ .++.|...|...|.|.++.
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence            4458999999999999999999999999999999  444444332 35788999999999 9999999999999999985


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe-c-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-C-QSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      . .+. ++...+.+++++|+|+|. +||.|+.|+.|+||-+.. +....... + ..+|+.+.|++|+.+|.+-+.|-.|
T Consensus       439 ~-lv~-~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei  515 (626)
T KOG2106|consen  439 D-LVT-IHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEI  515 (626)
T ss_pred             e-eEE-EEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEE
Confidence            5 343 343488999999999998 888999999999999864 33333222 2 4789999999999999999999999


Q ss_pred             EEEEC
Q 004885          707 SILDV  711 (725)
Q Consensus       707 ~IwDl  711 (725)
                      -.|..
T Consensus       516 LyW~~  520 (626)
T KOG2106|consen  516 LYWKP  520 (626)
T ss_pred             EEEcc
Confidence            99943

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.39  E-value=6.6e-11  Score=128.30  Aligned_cols=185  Identities=12%  Similarity=0.151  Sum_probs=130.4

Q ss_pred             EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-
Q 004885          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES-  586 (725)
Q Consensus       509 lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~-  586 (725)
                      .++...|+.|.+|.....                .+++.+..+. +.+....++++|++++|++++ .++.|.+|+++. 
T Consensus         5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence            344467899999955211                1223444443 235577899999999887764 478999999863 


Q ss_pred             CeE--EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       587 ~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      ++.  +.... .......|+|+|++++|++++. ++.|.+||+++...   .+..+. +.....+++|+|+++.++++..
T Consensus        68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence            332  22222 2345678999999999988875 88999999975331   222222 2345788899999998888888


Q ss_pred             CCCcEEEEECCCCeeEE-------EEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECC
Q 004885          661 NNSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE  712 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~-------~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~  712 (725)
                      .++.|++||+.+...+.       .+........+.|+|++++++++.. ++.|.+||+.
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            88999999998633221       1222456788999999999988876 8999999997

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.6e-12  Score=140.90  Aligned_cols=155  Identities=17%  Similarity=0.273  Sum_probs=131.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      -..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..+++||.|..|+.++.|+.++++|+.-...+
T Consensus       564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP  642 (733)
T KOG0650|consen  564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP  642 (733)
T ss_pred             hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence            34566999999999999988874 58999999887777777777889999999999999999999999999999987778


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC------CCeeEE---EEec-----CCCeEEEEEecCCCEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NGSCAG---VFKC-----QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~------t~~~v~---~~~~-----~~~V~sv~fspdg~~Ll  698 (725)
                      ..++.-|...|++|+||+.-. +||+|+.||++.||--.      ....+.   .+.+     ..+|..++|+|.-.+|+
T Consensus       643 yk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf  721 (733)
T KOG0650|consen  643 YKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF  721 (733)
T ss_pred             hHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEE
Confidence            889999999999999999877 99999999999988432      222232   2322     34588899999999999


Q ss_pred             EEEcCCeEEEE
Q 004885          699 AAAIENYISIL  709 (725)
Q Consensus       699 a~s~Dg~V~Iw  709 (725)
                      +++.||+|++|
T Consensus       722 sAGAd~tirlf  732 (733)
T KOG0650|consen  722 SAGADGTIRLF  732 (733)
T ss_pred             ecCCCceEEee
Confidence            99999999998

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.4e-11  Score=138.82  Aligned_cols=162  Identities=17%  Similarity=0.230  Sum_probs=117.7

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR  622 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIr  622 (725)
                      ..+..|...|.+.+|||||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+||+++|+.++ .++.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3456677889999999999999887754   3699999988754  3333433   44789999999887764 678666


Q ss_pred             EE--ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeEEEEEecCCCEEEE
Q 004885          623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       623 vW--Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~~~~V~sv~fspdg~~Lla  699 (725)
                      ||  |+.++.  +..+..+...+.++.|+|+|+.++++++.++.+.||+++.. .....+.+. . .++.|+|||++|++
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia~  349 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLVM  349 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEEE
Confidence            65  555544  55666677778899999999988877777888888876532 222333222 2 56789999999988


Q ss_pred             EEcCCeEEEEECCCCeEEE
Q 004885          700 AAIENYISILDVETQVCRL  718 (725)
Q Consensus       700 ~s~Dg~V~IwDl~tg~~v~  718 (725)
                      ++.++ |.+||+.++++..
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             EcCCC-EEEEECCCCCeEE
Confidence            87755 6669999986543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=2.4e-12  Score=136.89  Aligned_cols=161  Identities=22%  Similarity=0.224  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-  637 (725)
                      .+++|+.+|..|++++.||++|||+..+...+.....|...|.+++|+||+++|++.+.| ..+||+++++. ++.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-ALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-hhhhcCC
Confidence            789999999999999999999999988877777788899999999999999999999999 89999999985 454443 


Q ss_pred             -cCCCCeEEEEEccCC---CeEEE-EEeCCCcEEEEECCCCee---E---EEEecCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          638 -GHSTTVMSLDFHPSK---EDLLC-SCDNNSEIRYWSINNGSC---A---GVFKCQSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       638 -~h~~~V~sl~fsP~g---~~lla-Sgs~Dg~I~IwDl~t~~~---v---~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                       .-......+.|+-++   ..+++ .....+.|+.||+...+.   +   ..+.....|++++++++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             223346677887765   32222 233445677777653222   1   111225689999999999999999999999


Q ss_pred             EEEECCCCeEEEEEe
Q 004885          707 SILDVETQVCRLKLQ  721 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~  721 (725)
                      .|+++.+-++++-++
T Consensus       306 ai~~~~~lq~~~~vk  320 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVK  320 (398)
T ss_pred             EEEEeceeeeeEeeh
Confidence            999999998888775

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.37  E-value=4.7e-12  Score=137.20  Aligned_cols=162  Identities=18%  Similarity=0.255  Sum_probs=120.6

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      .++.++.||++.+..                    ...+..+.+.+|.+.|.|-.|+|||.-|+++++||.|+||.- +|
T Consensus        77 ~~~i~s~DGkf~il~--------------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG  135 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN--------------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG  135 (737)
T ss_pred             eEEEEcCCceEEEec--------------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc
Confidence            455567788887771                    112334567799999999999999999999999999999984 44


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                      -...++.....+|+|++|.|+...++-|. .+.+.|=-+.-.. .+...+.|.+-|.+++|++..+ ++++|+.|-..+|
T Consensus       136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKv  212 (737)
T KOG1524|consen  136 MLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKI  212 (737)
T ss_pred             hHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc-ceeEEeccCcEEEEeecCcccc-ceeecCCceeEEe
Confidence            44445555678999999999877665554 3445555555444 5677889999999999999976 8889999999999


Q ss_pred             EECCCCeeEEEEecCCCeEEEEEecC
Q 004885          668 WSINNGSCAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       668 wDl~t~~~v~~~~~~~~V~sv~fspd  693 (725)
                      ||.........-.+..+|++++|.|+
T Consensus       213 WD~~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  213 WDAQGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ecccCcccccCChhccceeeeeeccc
Confidence            99864333333334556666666666

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.4e-10  Score=130.67  Aligned_cols=163  Identities=13%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCC
Q 004885          557 KVESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTENPD  630 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSg-s~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvW--Dl~~~~  630 (725)
                      .+.+++|+|||+.|+.. +.++  .|++||+++++... +..+...+....|+||++.|+..+. ++...||  |+.++.
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            35568999999988754 4454  58899998876654 4444556789999999998876665 3444444  666554


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCe---
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY---  705 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~---  705 (725)
                        ...+..+...+.+++|+|+|+.+++++..+  ..|++||+.++.... +..........|+|||.+|+.++.++.   
T Consensus       323 --~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~  399 (429)
T PRK03629        323 --PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSV  399 (429)
T ss_pred             --eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceE
Confidence              344444445567899999999776665544  358889998886543 333233457889999999999888754   


Q ss_pred             EEEEECCCCeEEEEEeCCC
Q 004885          706 ISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       706 V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.++++ +|+....+.+|.
T Consensus       400 l~~~~~-~G~~~~~l~~~~  417 (429)
T PRK03629        400 LNLVST-DGRFKARLPATD  417 (429)
T ss_pred             EEEEEC-CCCCeEECccCC
Confidence            677787 466667777764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.37  E-value=1.1e-11  Score=127.78  Aligned_cols=157  Identities=15%  Similarity=0.231  Sum_probs=131.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      -..+|+|.+|++|+..+|++...+.|.||....   .+..+++..|...|++|+|.|..+.|++|+.|..-+||....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            356799999999999999999999999998754   56889999999999999999999999999999999999994433


Q ss_pred             --eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCCEEEEEEcC
Q 004885          631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       631 --~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~D  703 (725)
                        .+...+..+...+++|.|+|..+ .|++|+....|.||-++...--..-+     ....|++++|+|++-.|++|+.|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence              23455666788999999999977 77889888899999887543221111     25679999999998889999999


Q ss_pred             CeEEEEEC
Q 004885          704 NYISILDV  711 (725)
Q Consensus       704 g~V~IwDl  711 (725)
                      +..+||..
T Consensus       168 ~k~rVfSa  175 (361)
T KOG1523|consen  168 GKCRVFSA  175 (361)
T ss_pred             cceeEEEE
Confidence            99999964

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.35  E-value=1.4e-10  Score=125.76  Aligned_cols=156  Identities=15%  Similarity=0.214  Sum_probs=109.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~-------~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl  626 (725)
                      ....+++|+|+++++++++ .++.|.+||+++...+.       .+. .......++|+|++++|++++. +++|.+||+
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            3467889999999886554 56899999997633221       111 1234678999999999988876 899999999


Q ss_pred             CCC--C-eeeEEEecC------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeEEEEEecC
Q 004885          627 ENP--D-YSLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       627 ~~~--~-~~l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~~~~V~sv~fspd  693 (725)
                      +..  . ..+..+..+      ......+.|+|++++++++...++.|.+|++....    .+..+........++|+|+
T Consensus       205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d  284 (330)
T PRK11028        205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS  284 (330)
T ss_pred             eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence            742  2 122222211      12234688999999777766668899999996432    2333333345678999999


Q ss_pred             CCEEEEEEc-CCeEEEEECC
Q 004885          694 LGRILAAAI-ENYISILDVE  712 (725)
Q Consensus       694 g~~Lla~s~-Dg~V~IwDl~  712 (725)
                      |++|+++.. +++|.||++.
T Consensus       285 g~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        285 GKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEEEccCCcEEEEEEc
Confidence            999998876 8999999874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=1.5e-10  Score=121.04  Aligned_cols=220  Identities=15%  Similarity=0.207  Sum_probs=146.7

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +....-+.+++++|.|-+..              -++.|+. .-|.+|.......    ..+.... -+.-...+...++
T Consensus       135 Lks~sQrnvtclawRPlsas--------------elavgCr-~gIciW~~s~tln----~~r~~~~-~s~~~~qvl~~pg  194 (445)
T KOG2139|consen  135 LKSVSQRNVTCLAWRPLSAS--------------ELAVGCR-AGICIWSDSRTLN----ANRNIRM-MSTHHLQVLQDPG  194 (445)
T ss_pred             ecchhhcceeEEEeccCCcc--------------eeeeeec-ceeEEEEcCcccc----ccccccc-ccccchhheeCCC
Confidence            33444567899999997762              3444444 5688893322211    1110000 0111123344456


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      | ..|+++.|.+||..+++++. |..|.|||.+++..+.....--+.++-+.|+||+.+|+.+..|+..++|.......+
T Consensus       195 h-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~  273 (445)
T KOG2139|consen  195 H-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK  273 (445)
T ss_pred             C-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence            6 67999999999999999886 568999999998776555444678999999999999999999999999977765534


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-------------eEEEEe----------cCCCeEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------CAGVFK----------CQSGATQMR  689 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-------------~v~~~~----------~~~~V~sv~  689 (725)
                      .+...+ .+.|...+|+|+|..+|++++..-.|+-.......             .+..+.          ..+++.+++
T Consensus       274 erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la  352 (445)
T KOG2139|consen  274 ERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA  352 (445)
T ss_pred             cceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence            444443 35899999999999999988755444333222110             011110          135689999


Q ss_pred             EecCCCEEEEEEcC--------CeEEEEECCCCe
Q 004885          690 FQPRLGRILAAAIE--------NYISILDVETQV  715 (725)
Q Consensus       690 fspdg~~Lla~s~D--------g~V~IwDl~tg~  715 (725)
                      |+|.|.+|++.-..        ..|.+||.+..-
T Consensus       353 wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  353 WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             ECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            99999999887542        357788877653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.4e-10  Score=130.65  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=117.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 004885          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl  626 (725)
                      +..+...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44567789999999999999887653   359999998876543 333345667899999998876 5677887777765


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE--CCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD--l~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      +.....+..+..+...+..+.|+|+|+.+++++..++...||.  +.++................|+|||++|+.++.++
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            4322235556556666778899999998777666556666664  45554333322233455689999999998877654


Q ss_pred             ---eEEEEECCCCeEEE
Q 004885          705 ---YISILDVETQVCRL  718 (725)
Q Consensus       705 ---~V~IwDl~tg~~v~  718 (725)
                         .|.+||+.+++...
T Consensus       350 g~~~I~v~d~~~g~~~~  366 (427)
T PRK02889        350 GAFKLYVQDLATGQVTA  366 (427)
T ss_pred             CcEEEEEEECCCCCeEE
Confidence               69999999886543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.8e-11  Score=126.85  Aligned_cols=164  Identities=17%  Similarity=0.220  Sum_probs=131.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      +.+.+|.+-|.+|.|+.++++|++|+.|..++||+++.      .+++..... |...|.|++|....++|++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            45679999999999999999999999999999999853      455655543 55899999999999999999999999


Q ss_pred             EEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeEEEEEecCCC
Q 004885          622 RVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~~~~V~sv~fspdg~  695 (725)
                      .+.|+++.. .+..+..  ..+.|..+..+|..+ +|++.+.++.|.|||++...    ++..........++.|+|...
T Consensus       130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             Eeeecccce-eeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            999999987 4555432  235899999999955 77788889999999998654    222223356788999999876


Q ss_pred             EEEE-EEcCCeEEEEECCCC
Q 004885          696 RILA-AAIENYISILDVETQ  714 (725)
Q Consensus       696 ~Lla-~s~Dg~V~IwDl~tg  714 (725)
                      .|++ .+..+.+.|||++..
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eeEEeccccCCCCceeeccc
Confidence            6554 455788999999865

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.1e-10  Score=127.13  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=122.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dgt--Ir  622 (725)
                      ..+..|...|.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+||++.|+ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            345577788999999999998887764   468999999887654 4455667788999999998775 5555554  77


Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~  700 (725)
                      +||+.++.  +..+..+.......+|+|+|+.++++...+|  .|++||+..+...........+..+.|+|+|++|+..
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            77888765  4556666666788999999997776665444  5888898876655444444567788999999999887


Q ss_pred             EcC---CeEEEEECCCCe
Q 004885          701 AIE---NYISILDVETQV  715 (725)
Q Consensus       701 s~D---g~V~IwDl~tg~  715 (725)
                      ..+   ..|.+||+.++.
T Consensus       352 ~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             EcCCCceEEEEEECCCCc
Confidence            653   468899986553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.31  E-value=7.6e-11  Score=128.31  Aligned_cols=160  Identities=16%  Similarity=0.242  Sum_probs=122.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC---------
Q 004885          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD---------  630 (725)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~---------  630 (725)
                      +++--|++|-.-|-|.+.|....+..+.+.    -....|+||.|-|. ...++.+-.+|.+.+||.+...         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            355567788778888888865422221111    12478999999995 4566677779999999764210         


Q ss_pred             ------e------------eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe
Q 004885          631 ------Y------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ  691 (725)
Q Consensus       631 ------~------------~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs  691 (725)
                            .            ++..+.--.+.|..++|+|||. +||+.+.||.+||||..+.+++..++. -++..||+|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                  0            1222222345789999999998 677889999999999999888777765 6889999999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          692 PRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |||+||++|+.|..|.||.+..+++|.+=+||.+
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS  375 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS  375 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEecccccc
Confidence            9999999999999999999999999999999975

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.30  E-value=1.8e-10  Score=115.87  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=91.9

Q ss_pred             CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004885          555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP  629 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~~  629 (725)
                      .+.|.+++|+|+|+.||++  ..++.|.+||++ .+.+..+.  ...+..|.|+|+|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3569999999999987654  457799999996 56666664  5678899999999999998754   67999999976


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEe
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK  680 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-----~Dg~I~IwDl~t~~~v~~~~  680 (725)
                      + .+..+. | ..++.++|+|+|++++.+.+     .|..++||+.. |+.+....
T Consensus       136 ~-~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  136 K-KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             E-Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            6 455443 3 34789999999997765554     37889999985 66665543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.30  E-value=2.5e-11  Score=131.66  Aligned_cols=180  Identities=11%  Similarity=0.149  Sum_probs=133.9

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.+-.|++||+               -+.+.+.||.|++|.-                 .+.   ...++.....+
T Consensus       103 H~~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSr-----------------sGM---LRStl~Q~~~~  147 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGA---------------GLLTAGEDGVIKIWSR-----------------SGM---LRSTVVQNEES  147 (737)
T ss_pred             hhhhhhhcccCCCCc---------------eeeeecCCceEEEEec-----------------cch---HHHHHhhcCce
Confidence            344556667777776               6788889999999921                 111   11233345567


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      |+|++|.|+.+.++.|- .+.+.|=.+.....+-.++.|.+-|.+++|++..+.+++|+.|...+|||....  .+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCC
Confidence            99999999887666653 356777777666667788999999999999999999999999999999998743  466667


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .|..+|++|+|.|+ . +++.++. .++|+=..          ..+.|..++|++||..+.+|+..|.|.+
T Consensus       225 ~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p----------~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-K-DYLLWSY-NTARFSSP----------RVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             hhccceeeeeeccc-c-ceeeeee-eeeeecCC----------CccceEEEEEcCCCceeeccccCceEEE
Confidence            88999999999999 3 5555553 35552111          2467999999999998888877776543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.5e-10  Score=122.27  Aligned_cols=199  Identities=16%  Similarity=0.271  Sum_probs=152.9

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--CcE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KKA  579 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~D--g~V  579 (725)
                      .-.+.+|.+|-.+|.+.+|........            .   .....+..+ ..+..+.-++... ++|+|+..  ..+
T Consensus       112 ~~~dg~Litc~~sG~l~~~~~k~~d~h------------s---s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  112 KLADGTLITCVSSGNLQVRHDKSGDLH------------S---SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL  175 (412)
T ss_pred             hhcCCEEEEEecCCcEEEEeccCCccc------------c---ccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence            344557788888899999944322100            0   111112222 4466677776444 56668888  889


Q ss_pred             EEEECCCCeEEEEecc---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          580 VLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       580 ~IWdl~~~~~i~~l~~---------H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                      .|||++..+.+..-+.         -.-+++++.|-+.  ...|+++..-+.||+||.+....++..|.-...+|+++..
T Consensus       176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence            9999988755544321         1245778999887  7889999999999999999888889999888899999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      .|.++ +++++..-+.+..||++.++.+.. ++. .+.|++|..+|.+.++++|+-|..|+|+|+.+.+.++
T Consensus       256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            99998 666888899999999999988877 555 7889999999999999999999999999999965543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1e-10  Score=122.25  Aligned_cols=186  Identities=15%  Similarity=0.172  Sum_probs=131.6

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC-CCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STS  556 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~  556 (725)
                      ...+...++|+++-.               -++.+..|..|++|...+                    +....++. ...
T Consensus        97 s~~dlr~~aWhqH~~---------------~fava~nddvVriy~kss--------------------t~pt~Lks~sQr  141 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHII---------------AFAVATNDDVVRIYDKSS--------------------TCPTKLKSVSQR  141 (445)
T ss_pred             hhcceeeEeechhhh---------------hhhhhccCcEEEEeccCC--------------------CCCceecchhhc
Confidence            455777888887433               457788999999993322                    11122222 234


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----eE----------EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCe
Q 004885          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSA-DRT  620 (725)
Q Consensus       557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~----~~----------i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dgt  620 (725)
                      .|+|++|-| .++.|++|+..| |.||..+..    ..          +....+| .+|+++.|.+|+..+++++. |..
T Consensus       142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence            599999999 455788887654 899976431    11          1122445 68999999999999999987 678


Q ss_pred             EEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCCEEEE
Q 004885          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~~Lla  699 (725)
                      |.|||.+++. ++.....-.+.++-+.|+||+.++|| +.-|+..++|... +..+.+-.-..+.|...+|+|+|.+|+.
T Consensus       220 i~iWdpdtg~-~~pL~~~glgg~slLkwSPdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  220 IMIWDPDTGQ-KIPLIPKGLGGFSLLKWSPDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             EEEEcCCCCC-cccccccCCCceeeEEEcCCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence            9999999987 34433334467889999999997664 5559999999554 4455555555678999999999998776


Q ss_pred             EEc
Q 004885          700 AAI  702 (725)
Q Consensus       700 ~s~  702 (725)
                      +..
T Consensus       298 ~~s  300 (445)
T KOG2139|consen  298 ACS  300 (445)
T ss_pred             EEc
Confidence            554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.2e-10  Score=133.24  Aligned_cols=194  Identities=19%  Similarity=0.176  Sum_probs=149.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLWCT  584 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg---~~LaSgs~Dg~V~IWdl  584 (725)
                      ++... .+..|.+|                   ...+...++.+++|...++.+.+.|..   .++++++.||+|++||.
T Consensus        30 ~l~~~-~~~~V~Vy-------------------S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~   89 (792)
T KOG1963|consen   30 FLFLC-TGNFVKVY-------------------STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW   89 (792)
T ss_pred             EEEEe-eCCEEEEE-------------------ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence            44433 55788999                   333335566889999999999998844   36789999999999987


Q ss_pred             CCCeEEEEe-----------------------------------------------------------------------
Q 004885          585 ESFTVKSTL-----------------------------------------------------------------------  593 (725)
Q Consensus       585 ~~~~~i~~l-----------------------------------------------------------------------  593 (725)
                      ..+..++++                                                                       
T Consensus        90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~  169 (792)
T KOG1963|consen   90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN  169 (792)
T ss_pred             CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence            544332211                                                                       


Q ss_pred             --------------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCeeeEEEec
Q 004885          594 --------------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDYSLRTFTG  638 (725)
Q Consensus       594 --------------------------------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~---~~~~l~~~~~  638 (725)
                                                      ..|...++|+++||++++++++..||.|.+|.--.   .....+.++-
T Consensus       170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW  249 (792)
T KOG1963|consen  170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW  249 (792)
T ss_pred             CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence                                            01455678999999999999999999999995332   2335678889


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      |...|++++|+++|.+++ +|+.++.+.+|.+.+++....-+..+.|..+.|+||+.++.+...|+.|.+..+.+-+...
T Consensus       250 H~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             cccccceeEEecCCceEe-ecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence            999999999999999555 9999999999999998843333347899999999999999999999999999886655544


Q ss_pred             EEeC
Q 004885          719 KLQV  722 (725)
Q Consensus       719 ~l~G  722 (725)
                      ++.|
T Consensus       329 tIsg  332 (792)
T KOG1963|consen  329 TISG  332 (792)
T ss_pred             hccC
Confidence            4443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4.5e-10  Score=126.52  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=109.5

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEE--CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 004885          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN  628 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWd--l~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl--~~  628 (725)
                      .+.+.+.+|+|||+.|+ +.+.++...||.  +..+. ...+..+...+....|+||+++|+..+. ++...||.+  .+
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            34567899999999776 567788766665  44443 4556656666778899999998876554 566666655  44


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--  704 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--  704 (725)
                      +.  ...+..+.......+|+|+|+++++++..++  .|++||+.++...... .......+.|+|||+.|+.++.++  
T Consensus       318 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        318 GA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             Cc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCC
Confidence            33  2222222334556899999997665554333  6999999987654333 333457889999999988887643  


Q ss_pred             -eEEEEECCCCeEEEEEeCC
Q 004885          705 -YISILDVETQVCRLKLQVS  723 (725)
Q Consensus       705 -~V~IwDl~tg~~v~~l~GH  723 (725)
                       .+.+.++ +|...+.+..+
T Consensus       395 ~~l~~~~~-~g~~~~~l~~~  413 (427)
T PRK02889        395 SVLAAVSS-DGRIKQRLSVQ  413 (427)
T ss_pred             EEEEEEEC-CCCceEEeecC
Confidence             4667777 46666655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.1e-10  Score=128.05  Aligned_cols=165  Identities=21%  Similarity=0.191  Sum_probs=120.7

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIrv  623 (725)
                      .+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+.+.+++|+||++.|+ +.+.++  .|.+
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            345667789999999999999887743   369999998876543 333445566889999998775 455555  6999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      ||+.++.  +..+..+......++|+|+|+.++++...++.  |+++|+.++..............++|+|||++|+..+
T Consensus       277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence            9998876  45555565566789999999977777665555  7777887776544333334455789999999988876


Q ss_pred             cCC---eEEEEECCCCeEE
Q 004885          702 IEN---YISILDVETQVCR  717 (725)
Q Consensus       702 ~Dg---~V~IwDl~tg~~v  717 (725)
                      .++   .|.+||+.+++..
T Consensus       355 ~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        355 GSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CCCCceeEEEEECCCCCeE
Confidence            543   6999999888654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=5.7e-10  Score=125.90  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=112.0

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 004885          555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN  628 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~La-Sgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dgt--IrvWDl~~  628 (725)
                      .+.+.+++|+|||+.|+ +.+.++  .|++||+.+++.. .+..+......++|+||+++|+.++. ++.  |.++|+.+
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            34456889999999765 555555  5999999887654 45556666678999999998877664 444  66667766


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC---
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---  703 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D---  703 (725)
                      +.  ...+..+......++|+|+|+.++++...++  .|.+||+.++... .+........+.|+|||++|+..+.+   
T Consensus       326 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~  402 (433)
T PRK04922        326 GS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGR  402 (433)
T ss_pred             CC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCc
Confidence            55  2333223344557899999997766554333  5999999887755 33333345678999999988877763   


Q ss_pred             CeEEEEECCCCeEEEEEe
Q 004885          704 NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       704 g~V~IwDl~tg~~v~~l~  721 (725)
                      ..|.++|+.. .....+.
T Consensus       403 ~~L~~~~~~g-~~~~~l~  419 (433)
T PRK04922        403 GVLAAVSTDG-RVRQRLV  419 (433)
T ss_pred             eEEEEEECCC-CceEEcc
Confidence            4688888854 4445444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=4e-11  Score=124.51  Aligned_cols=145  Identities=19%  Similarity=0.341  Sum_probs=114.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCe-eeEEEecCC-CCe
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV  643 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~~h~-~~V  643 (725)
                      ..+|++...|.|++||..++..+..|++|...++.++|..  ....+.+|+.||+||+||++.... ....+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888899999999999999999999999999999977  456789999999999999997652 334455555 344


Q ss_pred             EEEEEccCCCeEEEEEe----CCCcEEEEECCCCee-EEEEe--cCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885          644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRLG-RILAAAIENYISILDVET  713 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs----~Dg~I~IwDl~t~~~-v~~~~--~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t  713 (725)
                      .+++..-.+. ++++|.    .+-.|.+||+|.... +..+.  |...|++++|+|... .|++|+.||.|.|||++.
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            5555443444 776664    355799999998765 66554  478899999999765 677888899999999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.1e-09  Score=123.56  Aligned_cols=161  Identities=12%  Similarity=0.078  Sum_probs=113.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEE
Q 004885          552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD  625 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWD  625 (725)
                      ..+.+.+.+.+|+|||+.|+ +.+.++.  |++||+.++.. ..+..+........|+||+++|+..+. ++  .|.+||
T Consensus       242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            34556678999999999765 5555654  77778887665 446666667788999999998877664 33  688888


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      +..+.  ...+..+...+..+.|+|+|+.++++....  ..|.+||+..+. ...+.....+..+.|+|||+.|+..+.+
T Consensus       321 ~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        321 ADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEcc
Confidence            87655  344444455677789999999776655433  358888986543 3444444457789999999988776653


Q ss_pred             ------CeEEEEECCCCeE
Q 004885          704 ------NYISILDVETQVC  716 (725)
Q Consensus       704 ------g~V~IwDl~tg~~  716 (725)
                            ..|.++|+..+..
T Consensus       398 ~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCCCcceEEEEECCCCce
Confidence                  3688889876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.25  E-value=7e-10  Score=114.57  Aligned_cols=157  Identities=10%  Similarity=0.178  Sum_probs=122.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCC--CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHT--QWITDVRFSPSLSRLAT-SSADRTVRVWDTENP  629 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~--~~V~~IafsPd~~~Las-gs~DgtIrvWDl~~~  629 (725)
                      ...+|.+|++.+  .+|++.- ..+|+||... +.+.++.++.-.  ..+.+++-+.+..+|+. |-.-|.|.|-|+...
T Consensus        93 f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   93 FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            356799999964  4566664 5789999987 456666664333  23444433334445543 345789999999876


Q ss_pred             Ce-eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCC
Q 004885          630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       630 ~~-~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~-I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      .. ....+.+|.+.|.|++.+-+|. ++||++..|+ |||||..+|..+.+++.   +..|.+|+|+|+..+|++++..|
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            63 3578889999999999999987 8899998887 89999999999999985   56799999999999999988899


Q ss_pred             eEEEEECCCC
Q 004885          705 YISILDVETQ  714 (725)
Q Consensus       705 ~V~IwDl~tg  714 (725)
                      +|+||.++..
T Consensus       249 TlHiF~l~~~  258 (346)
T KOG2111|consen  249 TLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeecC
Confidence            9999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.24  E-value=7.3e-10  Score=130.18  Aligned_cols=206  Identities=15%  Similarity=0.140  Sum_probs=147.6

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      .++..|+++||.||+|++|....-.            +++...+...++..-...+.++.+.+.+..+|+++.||.|++.
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            3445799999999999999554331            1223344445555456789999999999999999999999999


Q ss_pred             ECCCCe-------EEEEeccCC-CCeE-EEEEcC-CCC-EEEEEeCCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEc
Q 004885          583 CTESFT-------VKSTLEEHT-QWIT-DVRFSP-SLS-RLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFH  649 (725)
Q Consensus       583 dl~~~~-------~i~~l~~H~-~~V~-~IafsP-d~~-~Lasgs~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fs  649 (725)
                      +++-.+       ..+....+. +.+. .-+|.. ... .|+.+..-+.|..||++.... ...+  ....+.|++++.+
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCccccceeEEEec
Confidence            987521       122222222 3333 334433 233 677888889999999987652 2222  2234779999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC---EEEEEEc--CCeEEEEECCCCeEEEEEeC
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG---RILAAAI--ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~---~Lla~s~--Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      |.+. +++.|...|.+-+||++-+.++..+.+  ..++..++.+|-.+   ..++++.  .+.|.+|++++|.|-..|..
T Consensus      1205 p~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             CCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence            9988 777999999999999999999988876  66788888776543   4444444  68899999999988777653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.7e-10  Score=131.80  Aligned_cols=201  Identities=14%  Similarity=0.159  Sum_probs=136.3

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++.+|+.||.||+|..-.+...+......|..-.+       .+.+-.+.-.-+.|-....+|+++|.-..|+|||+
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~-------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa 1194 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD-------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA 1194 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccc-------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec
Confidence            34567899999999999433222112222222211111       01111122234567665556666666889999999


Q ss_pred             CCCeEEEEec-cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCCC--eEEEEEccCCCeEEEE
Q 004885          585 ESFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLCS  658 (725)
Q Consensus       585 ~~~~~i~~l~-~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~~--V~sl~fsP~g~~llaS  658 (725)
                      +...++..+. +....|+++.-+- .++.|+.|..||.|++||.+...  ..+..++.|...  |..+.+.+.|-.-+++
T Consensus      1195 ~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1195 HKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred             ccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence            8877665553 3345566665443 47899999999999999998654  357788889877  9999999987655789


Q ss_pred             EeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          659 CDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      |+.||.|++||++.......+.      ..+..+++..+++...+++|+. ..|+||++..
T Consensus      1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            9999999999999743332222      1335999999999777766666 9999999863

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=2.4e-10  Score=120.01  Aligned_cols=211  Identities=12%  Similarity=0.093  Sum_probs=155.0

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAST  555 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~  555 (725)
                      .+..++.++.|+..+               +||++|+.|..+++|.......             ..+-+++... ..|.
T Consensus        54 ~H~GCiNAlqFS~N~---------------~~L~SGGDD~~~~~W~~de~~~-------------~k~~KPI~~~~~~H~  105 (609)
T KOG4227|consen   54 EHTGCINALQFSHND---------------RFLASGGDDMHGRVWNVDELMV-------------RKTPKPIGVMEHPHR  105 (609)
T ss_pred             hhccccceeeeccCC---------------eEEeecCCcceeeeechHHHHh-------------hcCCCCceeccCccc
Confidence            355567777887755               4999999999999995432210             0111222222 3566


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ..|.|++|.....+|++|+.+++|...|+++...+.++..  ..+.|+.+..+|..+.|++.+.++.|.+||++.....+
T Consensus       106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~  185 (609)
T KOG4227|consen  106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI  185 (609)
T ss_pred             cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence            8899999998888999999999999999999988877753  23589999999999999999999999999998754222


Q ss_pred             --EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe---c----CCCeEEEEEecCCCEEEEEEcC
Q 004885          634 --RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---C----QSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       634 --~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~~---~----~~~V~sv~fspdg~~Lla~s~D  703 (725)
                        ............+-|+|....+|++.+..+.+.+||++... .+....   .    .....++.|+|.|..+++.-..
T Consensus       186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence              23333445678899999999999999989999999998532 221111   1    2234678899999888877665


Q ss_pred             CeEEEEECCCCe
Q 004885          704 NYISILDVETQV  715 (725)
Q Consensus       704 g~V~IwDl~tg~  715 (725)
                      ..-.+||+-+.+
T Consensus       266 ~~P~~~D~~S~R  277 (609)
T KOG4227|consen  266 KCPLYFDFISQR  277 (609)
T ss_pred             CCCEEeeeeccc
Confidence            556666766543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.23  E-value=2.1e-10  Score=134.62  Aligned_cols=179  Identities=16%  Similarity=0.160  Sum_probs=136.1

Q ss_pred             ceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004885          543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLAT  614 (725)
Q Consensus       543 ~~~~~~~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Las  614 (725)
                      .+...+..+..|...|..++.+++. .+|++||.||+|+|||.+.       .+...++......+.++.+.+++..+|+
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            3446778889999999999998755 8999999999999999864       1233444445788999999999999999


Q ss_pred             EeCCCeEEEEECCCCC--e----eeEEEecCC-CCe-EEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec---C
Q 004885          615 SSADRTVRVWDTENPD--Y----SLRTFTGHS-TTV-MSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---Q  682 (725)
Q Consensus       615 gs~DgtIrvWDl~~~~--~----~l~~~~~h~-~~V-~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~  682 (725)
                      ++.||.|++.+++...  .    +.+....+. +.| ..-+|..... .+++.+..-+.|..||++.......++.   +
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            9999999999987621  1    111111121 223 3333433322 3667777788899999998777666664   6


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       683 ~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +-|++++.+|.+.+++.|+..|.+.+||+|-+..+.++.
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence            789999999999999999999999999999988877664

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.22  E-value=4.1e-11  Score=128.50  Aligned_cols=161  Identities=13%  Similarity=0.202  Sum_probs=140.7

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      ..++++++.|. .|..+.|-|..=+|++++..|.++.-|+.+|+.+..+..-.+.+..++-.|-...+-+|...|+|.+|
T Consensus       200 GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  200 GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence            35777887775 48999999988899999999999999999999998888778889999999988899999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      ...... ++..+.+|.++|.+|++++.|. +++|.+.|..|+|||+++...+.++....+...++|+..|  +++++...
T Consensus       279 SP~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~  354 (545)
T KOG1272|consen  279 SPNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGD  354 (545)
T ss_pred             CCCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCC
Confidence            999887 7888889999999999999998 5668888999999999998877777766778889998763  66777778


Q ss_pred             eEEEEE
Q 004885          705 YISILD  710 (725)
Q Consensus       705 ~V~IwD  710 (725)
                      .|.||.
T Consensus       355 ~v~iw~  360 (545)
T KOG1272|consen  355 HVQIWK  360 (545)
T ss_pred             eeeeeh
Confidence            899994

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2.2e-09  Score=121.00  Aligned_cols=163  Identities=19%  Similarity=0.178  Sum_probs=115.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 004885          552 PASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVWD  625 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dg--tIrvWD  625 (725)
                      ..+...+.+.+|||||+.|+..+.   +..|++||+.+++... +....+.+..++|+||++.|+.. +.++  .|.+||
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            345678999999999998886543   3579999998875433 22233445578999999988754 4444  588999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      +.++.  +..+..+...+..++|+|+|+.++++...++.  |+++|+.++...........+...+|+|||++|+.++.+
T Consensus       274 ~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        274 LASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence            98876  34444445567899999999977766665554  555577766554333333456778999999998887653


Q ss_pred             ---CeEEEEECCCCeEE
Q 004885          704 ---NYISILDVETQVCR  717 (725)
Q Consensus       704 ---g~V~IwDl~tg~~v  717 (725)
                         ..|.+||+.+++..
T Consensus       352 ~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        352 GGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             CCCceEEEEECCCCCeE
Confidence               46899999988643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.21  E-value=6.1e-09  Score=114.86  Aligned_cols=193  Identities=19%  Similarity=0.199  Sum_probs=137.4

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      ++++-..++.|.+.                   +..+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+.
T Consensus         8 ~~V~~~~~~~v~vi-------------------D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~   68 (369)
T PF02239_consen    8 FYVVERGSGSVAVI-------------------DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG   68 (369)
T ss_dssp             EEEEEGGGTEEEEE-------------------ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred             EEEEecCCCEEEEE-------------------ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence            44555567888888                   44445666677655443445789999999999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEec-------CCCCeEEEEEccCCCeEEEEE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~-------h~~~V~sl~fsP~g~~llaSg  659 (725)
                      +.+.++.. .....++++++|++++++++ .++.+.++|.++.+ .+..+..       ....+..|..+|.+..++++-
T Consensus        69 ~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   69 KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            99988875 34568899999999998776 58999999999887 5655542       234678888899988677666


Q ss_pred             eCCCcEEEEECCCCeeE--EEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          660 DNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v--~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      -+.+.|.+.|....+.+  ..+..........|+|++++++++.. ++.|.++|.++++.+..+.
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            66688999998765433  44445677889999999999887654 6899999999998887654

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.21  E-value=3.1e-10  Score=129.33  Aligned_cols=159  Identities=23%  Similarity=0.297  Sum_probs=122.5

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 004885          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWD  625 (725)
Q Consensus       555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~--i~----~l~~H~~~V~~IafsPd~--~~Lasgs~DgtIrvWD  625 (725)
                      ...|+|++|+| +..+||.|+++|.|.+||++.+..  ..    ....|..+|+.+.|..+.  .-|++++.||.|+.|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            56799999999 666889999999999999987543  22    224688999999997743  4599999999999998


Q ss_pred             CCCCCe--------------------------------------------------------e------eEEEecCCCCe
Q 004885          626 TENPDY--------------------------------------------------------S------LRTFTGHSTTV  643 (725)
Q Consensus       626 l~~~~~--------------------------------------------------------~------l~~~~~h~~~V  643 (725)
                      ++.-..                                                        .      ...+..|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            752110                                                        0      11233467889


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IENYISILDVETQ  714 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~tg  714 (725)
                      +++.++|-+..+|.+++ |-+|+||... ...++..+.. ...|++++|+|....++++. .||.|.|||+...
T Consensus       402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            99999999988887777 8999999987 6667766665 34499999999876655554 4899999999643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=3.1e-09  Score=111.70  Aligned_cols=120  Identities=23%  Similarity=0.347  Sum_probs=98.3

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDT  626 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-IrvWDl  626 (725)
                      +...+...+.++.++..+.+||.-+  ..|.|.|||+.+-+.+.++..|.+.|-+++|+++|.+|||++..|+ |||+.+
T Consensus       124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            3334566677777777777888543  3689999999999999999999999999999999999999999886 789999


Q ss_pred             CCCCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          627 ENPDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       627 ~~~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      .++. .+..|+--  ...|.+++|+|++. +|++.+..++|+||.++
T Consensus       204 ~~G~-kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  204 PEGQ-KLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCcc-EeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEec
Confidence            9988 56666522  24589999999988 66666778899999886

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.21  E-value=4.6e-11  Score=132.05  Aligned_cols=149  Identities=21%  Similarity=0.338  Sum_probs=124.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|..++|-|||..|+.+. +..+.|||...|..+.++++|...|+|++|+.||+++++|+.|+.|.+|.-.-.. .+ . 
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L-k-   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL-K-   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee-e-
Confidence            599999999999877764 4579999999999999999999999999999999999999999999999876544 22 2 


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      -.|...|-|+.|+|-.. .+++|+-. ..-+|..... .+...+....|.+++|..||.+++.|-.+|+|.|-+..
T Consensus        90 YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            25889999999999966 67788743 4668887643 34444446789999999999999999999999998643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.19  E-value=3.1e-09  Score=118.79  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=120.9

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC--eEEE
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRV  623 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~Dg--tIrv  623 (725)
                      .+..+...+.+.+|+|||++|+.++.+   ..|++||+.+++... +..+...+.+++|+||++.|+. .+.++  .|.+
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            344566678999999999999887654   479999998876543 3345566778999999987764 44444  5888


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      ||+.++.  ...+..+........|+|+|+.++++...++  .|++||+.+++..........+..+.|+|++.+|+.++
T Consensus       263 ~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       263 MDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             EECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence            9998765  3444455555667899999997776665444  58888888776554443455678889999999999888


Q ss_pred             cCC---eEEEEECCCCeE
Q 004885          702 IEN---YISILDVETQVC  716 (725)
Q Consensus       702 ~Dg---~V~IwDl~tg~~  716 (725)
                      .++   .|.+||+.++..
T Consensus       341 ~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ccCCceEEEEEeCCCCCe
Confidence            765   799999988644

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=3.7e-09  Score=119.10  Aligned_cols=165  Identities=18%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE-
Q 004885          555 TSKVESCHFSPDGKLLATGGH-----DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW-  624 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvW-  624 (725)
                      .+.....+|||||+.|+..+.     |..+.+|++..   +........+...+...+|+||++.|+..+ .++...|| 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            334567899999998876553     22344477664   233333333334456789999999877655 46655555 


Q ss_pred             -ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          625 -DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       625 -Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                       ++.........+..+...+....|+|+|+.++++...+  ..|.+||+.++++.........+..+.|+|||++|+..+
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence             44322213444555556678899999999777666544  369999999887755444344678899999999887665


Q ss_pred             c---CCeEEEEECCCCeEEEE
Q 004885          702 I---ENYISILDVETQVCRLK  719 (725)
Q Consensus       702 ~---Dg~V~IwDl~tg~~v~~  719 (725)
                      .   +..|++||+.+++...-
T Consensus       390 ~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        390 GNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCCCceEEEEECCCCCEEEe
Confidence            4   35799999988865443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=6.5e-10  Score=113.69  Aligned_cols=169  Identities=19%  Similarity=0.200  Sum_probs=133.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ...++.|++.+.-++++..+|.+.+-+........  .+++|...++...|+. +.+.+++|+.|+.+..||++.+...+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            45688999989999999999999976665544444  7899999999999987 46789999999999999999655344


Q ss_pred             EE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCC-EEEEEEcCCeEEEEE
Q 004885          634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD  710 (725)
Q Consensus       634 ~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwD  710 (725)
                      .. ..-|...|.+|.-+|..+.++++|+.|..|++||.+ -++++..-...++|..++++|... .+++++.-+.++|.+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            33 567889999999999888899999999999999999 478887777789999999999744 344555556677777


Q ss_pred             CCCC--e---EEEEEeCCCC
Q 004885          711 VETQ--V---CRLKLQVSHS  725 (725)
Q Consensus       711 l~tg--~---~v~~l~GH~s  725 (725)
                      ...+  +   .....++|++
T Consensus       283 ~~~~~~e~~~~~~s~~~hdS  302 (339)
T KOG0280|consen  283 SSDKVLEFQIVLPSDKIHDS  302 (339)
T ss_pred             ecccccchheeeeccccccc
Confidence            6654  3   4455566653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.18  E-value=8.9e-11  Score=118.28  Aligned_cols=152  Identities=18%  Similarity=0.267  Sum_probs=120.0

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      ++++|-.++.|.+|+...+.    .....     ...++.+..+..|..+|.++.|.+.-..=++|+.+.++.+|++...
T Consensus       167 lllaGyEsghvv~wd~S~~~----~~~~~-----~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGD----KIIQL-----PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             EEEEeccCCeEEEEEccCCc----eeecc-----ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence            66778889999999665541    11111     1123445566789999999999876666778888999999988642


Q ss_pred             --eE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          588 --TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       588 --~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                        .+  ...++-..-.|..+.+.||++.++|+++|+.||||..++.. ++..++-|.+.|++++|+|+.+ ++++++.|+
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD~  315 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKDA  315 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCCc
Confidence              11  11222224568899999999999999999999999999988 8999999999999999999966 899999999


Q ss_pred             cEEEEEC
Q 004885          664 EIRYWSI  670 (725)
Q Consensus       664 ~I~IwDl  670 (725)
                      +|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=4.2e-10  Score=130.26  Aligned_cols=158  Identities=17%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 004885          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQW--ITDVRFSPSLS-RLATSSADRTVRVWDTE  627 (725)
Q Consensus       555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~---~~~i~~l~~H~~~--V~~IafsPd~~-~Lasgs~DgtIrvWDl~  627 (725)
                      ...|+++.-+- .|+.|++|..||.|++||.+.   ...+..++.|...  |..+.+-+.|- .|++|+.||.|++||++
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            34466665543 578999999999999999875   3457788899888  99999998654 59999999999999999


Q ss_pred             CC-CeeeEEEecCC--C-CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCC
Q 004885          628 NP-DYSLRTFTGHS--T-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLG  695 (725)
Q Consensus       628 ~~-~~~l~~~~~h~--~-~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~  695 (725)
                      .. .....++..|.  + .++++..|+..+ ++++|+. +.|+||++. |+.+..++.        .+.+.|++|+|..-
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence            84 22222333332  3 489999999977 8878876 899999997 333333331        45689999999977


Q ss_pred             EEEEEEcCCeEEEEECCCCe
Q 004885          696 RILAAAIENYISILDVETQV  715 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .+++|+.|.+|.||......
T Consensus      1365 llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhhccCCceEEEeecCCcC
Confidence            78888889999999887653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=5.2e-10  Score=118.19  Aligned_cols=177  Identities=13%  Similarity=0.106  Sum_probs=141.0

Q ss_pred             CCCCcEEEEeeCC--CcEEEecCCCCCCCCCccccccccCC---CceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeC
Q 004885          503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGH  575 (725)
Q Consensus       503 ~~~~~~lasGs~D--~~V~vw~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~  575 (725)
                      +....++++|+..  ..+++|+.....       .+|....   ..---.+      .-.++++.|-+.  ...||++..
T Consensus       158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrV------PvW~tdi~Fl~g~~~~~fat~T~  224 (412)
T KOG3881|consen  158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPNDRLGLRV------PVWITDIRFLEGSPNYKFATITR  224 (412)
T ss_pred             CCCCceEecCchhcccceeeeecccce-------eeeeccCCCCcccccee------eeeeccceecCCCCCceEEEEec
Confidence            4455688889999  889999654441       1121111   0000011      234788999886  778999999


Q ss_pred             CCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe
Q 004885          576 DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (725)
Q Consensus       576 Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~  654 (725)
                      -+.|++||... .+++..|.--..+|+++...|+++.|++|..-+.+..||++.+......+.+..+.|.+|..+|.++ 
T Consensus       225 ~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-  303 (412)
T KOG3881|consen  225 YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-  303 (412)
T ss_pred             ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-
Confidence            99999999986 4577778777889999999999999999999999999999999855556899999999999999988 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecC
Q 004885          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       655 llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspd  693 (725)
                      ++++|+-|+.|||+|+.+..++...-....+++|.+.++
T Consensus       304 ~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  304 VLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             eEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            888999999999999999888777766788888888665

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=8.4e-10  Score=128.40  Aligned_cols=149  Identities=19%  Similarity=0.262  Sum_probs=126.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~  640 (725)
                      +-++++.-++++|+--+.|.+|+....+.-..+.+|.+.|.++.|+-|++++++++.|.++|+|++++.+....+..+|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            33455666899999999999999874433336889999999999999999999999999999999999885555778999


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ..|+.++|+|.   .+++++.|-+.++|+.+ +..+.+++.  ...+..++..++.-.+++++.|+.+++||+..
T Consensus       219 aRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999998   57799999999999766 444446654  56799999999988889999999999999865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=2.9e-10  Score=137.10  Aligned_cols=189  Identities=22%  Similarity=0.297  Sum_probs=149.5

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      ++...+..+|+-|+.|++|.+..+.                .+...+  .+-...|+.+.|+..|+.+..+..||.+.+|
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCC----------------eEEEee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence            3445688999999999999654442                111111  1233789999999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       583 dl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      .+. .++......|.....+++|-.  ..+++++   .++.+.+||..-+...-..-++|.+.++++++.|... +|++|
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISG 2354 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEec
Confidence            987 566777888999999999975  5677764   4779999997654322222278999999999999977 78899


Q ss_pred             eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +.+|.|++||++..+.++.+..        ++ ...++++++.+|.|+||++..-..+++|++
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            9999999999999888887764        45 457899999999999999998888887764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=8e-09  Score=116.35  Aligned_cols=164  Identities=17%  Similarity=0.171  Sum_probs=117.8

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIrv  623 (725)
                      .+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+||+++|+ +.+.++  .|.+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566779999999999998876644   368999998876543 333344566789999999876 444454  6888


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      ||+.++.  ...+..+........|+|+|+.++++...++  .|+++|+.+++...............|+|+|++|+..+
T Consensus       272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence            8998765  3445556566778899999998877765554  57788888777544332233345678999999988876


Q ss_pred             cC-C--eEEEEECCCCeE
Q 004885          702 IE-N--YISILDVETQVC  716 (725)
Q Consensus       702 ~D-g--~V~IwDl~tg~~  716 (725)
                      .+ +  .|.+||+.+++.
T Consensus       350 ~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             ccCCceEEEEEECCCCCE
Confidence            53 2  588999998754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=2.5e-09  Score=117.42  Aligned_cols=226  Identities=12%  Similarity=0.126  Sum_probs=153.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccccccc------------CCCce
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV------------GKGFT  544 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~------------~~~~~  544 (725)
                      ......+.+..++||.              .++++|..-..|++|....-   ..++.++.+.            .+..-
T Consensus        49 e~p~ast~ik~s~DGq--------------Y~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~  111 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQ--------------YLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVF  111 (703)
T ss_pred             CCccccceeEecCCCc--------------EEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheE
Confidence            3444557778888887              46788888899999954332   1111111111            11111


Q ss_pred             eeeEEEecCCC-----------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q 004885          545 FTEFQLIPAST-----------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  613 (725)
Q Consensus       545 ~~~~~~l~~H~-----------~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La  613 (725)
                      +..-+.+.-|.           ..-.+++++.-..-|++++....|+-++++.|..+..|....+.+++|..++...+|+
T Consensus       112 L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  112 LQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             eecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence            11112222221           1123455544333344444556799999999999988888889999999999989999


Q ss_pred             EEeCCCeEEEEECCCCCeeeEEEe------cCCC-----CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885          614 TSSADRTVRVWDTENPDYSLRTFT------GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-  681 (725)
Q Consensus       614 sgs~DgtIrvWDl~~~~~~l~~~~------~h~~-----~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-  681 (725)
                      +|+.||.|-.||.+... .+.++.      .|.+     .|+++.|+.+|- -+++|..+|.|.|||+++.+++..-.+ 
T Consensus       192 ~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             ecccCceEEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccC
Confidence            99999999999999876 233222      2333     399999998865 567888999999999999988877766 


Q ss_pred             -CCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          682 -QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       682 -~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                       .-+|..+.|.+.+.. .++......++|||-.+|+....++
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             CccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence             667999999776433 3333445789999999998777665

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=4.6e-09  Score=120.54  Aligned_cols=167  Identities=17%  Similarity=0.262  Sum_probs=133.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~  627 (725)
                      ..|...++|.++||+++++|+|..||.|.||.--.    ......+.-|...|++++|+++|.+|++|+..+.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35777799999999999999999999999996422    23345678899999999999999999999999999999999


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeEEEEEecCCC
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG  695 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------------~~~V~sv~fspdg~  695 (725)
                      +++  ...+..-.++|..+.++|++. +++.+..|..|.+....+-....++.+            .+-.+.++++|.-+
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            987  344444568899999999988 555666799999987755443333322            23367889999778


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .++..+.-+.|.+||+-+.+.+..+.
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEE
Confidence            88888999999999999887666554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=2e-09  Score=118.24  Aligned_cols=164  Identities=16%  Similarity=0.270  Sum_probs=132.5

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------cCCC-----CeEEEEEcCCCCEEEEEe
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSS  616 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~------~H~~-----~V~~IafsPd~~~Lasgs  616 (725)
                      +..+....+.|++|..++...+|++|+.||.|-.||.++...+.++.      .|.+     .|+++.|+-+|-.+++|.
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt  247 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT  247 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence            33445556889999999988899999999999999998866555543      2333     399999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      .+|.|.|||++.....+..-.+..-+|..+.|.+.+ ...+++++ ...++|||-.+|+....++....+..+|+-|+++
T Consensus       248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG  326 (703)
T ss_pred             cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence            999999999999885444445556789999997762 22455655 6789999999999999999888899999999999


Q ss_pred             EEEEEEcCCeEEEEECC
Q 004885          696 RILAAAIENYISILDVE  712 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~  712 (725)
                      .++++-.+..+..|=+.
T Consensus       327 m~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIP  343 (703)
T ss_pred             eEEEecCCCcceeEEcc
Confidence            99999888777666443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.6e-08  Score=111.05  Aligned_cols=161  Identities=14%  Similarity=0.087  Sum_probs=107.2

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004885          556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSpdg~~La-Sgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~  629 (725)
                      +.+.+.+|+|||+.|+ +.+.++  .|++||+.++... .+..+...+....|+||++.|+..+. ++  .|.++|+.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3456789999999876 444555  5888899877654 45556666777899999998766553 33  5777788776


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC---C
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---N  704 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D---g  704 (725)
                      ..  ..+...........|+|+|+.++++...++  .|.+||+.++.... +..........|+|+|+.++.++.+   .
T Consensus       322 ~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~  398 (430)
T PRK00178        322 RA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRG  398 (430)
T ss_pred             CE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCce
Confidence            62  222222233456789999997776665444  58889998876533 3322233466899999998887764   3


Q ss_pred             eEEEEECCCCeEEEEEe
Q 004885          705 YISILDVETQVCRLKLQ  721 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~  721 (725)
                      .|.++++.. .....+.
T Consensus       399 ~l~~~~~~g-~~~~~l~  414 (430)
T PRK00178        399 VLMLVSING-RVRLPLP  414 (430)
T ss_pred             EEEEEECCC-CceEECc
Confidence            577888854 3333443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=2.8e-09  Score=111.00  Aligned_cols=218  Identities=16%  Similarity=0.224  Sum_probs=150.1

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC-
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-  554 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-  554 (725)
                      .....-++++.|...|.               +|++|..+|.|.+|.-.....+              .+.....+..| 
T Consensus        22 vteadiis~vef~~~Ge---------------~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshe   72 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGE---------------RLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHE   72 (433)
T ss_pred             echhcceeeEEeecccc---------------eEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccC
Confidence            34445566677776665               9999999999999933222211              11222222222 


Q ss_pred             -----------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeE--------------------------------
Q 004885          555 -----------TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTV--------------------------------  589 (725)
Q Consensus       555 -----------~~~V~~i~fSpdg~--~LaSgs~Dg~V~IWdl~~~~~--------------------------------  589 (725)
                                 ..+|..|.|.++++  .++....|++|++|-+.....                                
T Consensus        73 pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve  152 (433)
T KOG1354|consen   73 PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE  152 (433)
T ss_pred             cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee
Confidence                       35688999998665  567777899999997743110                                


Q ss_pred             ---EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEEecCC-----CCeEEEEEccCCCeEEEE
Q 004885          590 ---KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       590 ---i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~-----~~V~sl~fsP~g~~llaS  658 (725)
                         .+++ .+|..-|++|.+..|...++++. |=.|.+|+++-..  ..+..++.+.     .-|++..|+|....+|+-
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y  231 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY  231 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence               0111 35788899999999988888764 7889999987543  2344444443     568999999998888888


Q ss_pred             EeCCCcEEEEECCCCee-EE---EEec-------------CCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCCeEEEEE
Q 004885          659 CDNNSEIRYWSINNGSC-AG---VFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDV-ETQVCRLKL  720 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~-v~---~~~~-------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl-~tg~~v~~l  720 (725)
                      .+..|+|++.|++...+ ..   .|+.             -..|..+.|+++|+|+++- .--+|+|||+ ...+++.++
T Consensus       232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETY  310 (433)
T ss_pred             ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEE
Confidence            88899999999984321 11   1110             2347889999999888754 3378999999 556888888


Q ss_pred             eCCC
Q 004885          721 QVSH  724 (725)
Q Consensus       721 ~GH~  724 (725)
                      +-|.
T Consensus       311 ~vh~  314 (433)
T KOG1354|consen  311 PVHE  314 (433)
T ss_pred             eehH
Confidence            7764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.04  E-value=5.4e-08  Score=108.78  Aligned_cols=164  Identities=17%  Similarity=0.185  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 004885          553 ASTSKVESCHFSPDGKLLAT-GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT  626 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaS-gs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl  626 (725)
                      .+.+.+.+++|+|||+.|+. .+.++  .|++||+.++... .+..+........|+|++++|+.++. ++  .|.+||+
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34556778999999997764 44444  5888998876543 44445555667899999998876654 33  5777888


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      .++.  ...+..+...+..+.|+|+++.++++....+  .|.+||+.++.... +..........|+|++++|+.++.++
T Consensus       310 ~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       310 DGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCC
Confidence            7665  3444445566788999999986665544322  68899998765433 33233455678999999988887753


Q ss_pred             ---eEEEEECCCCeEEEEEe
Q 004885          705 ---YISILDVETQVCRLKLQ  721 (725)
Q Consensus       705 ---~V~IwDl~tg~~v~~l~  721 (725)
                         .+++++.. +.....+.
T Consensus       387 ~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       387 GRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             CcEEEEEEECC-CceeeECC
Confidence               46666654 44455554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.04  E-value=4.9e-10  Score=120.34  Aligned_cols=161  Identities=12%  Similarity=0.158  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------------------------------EEEEeccCCC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------------------------------VKSTLEEHTQ  598 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---------------------------------------~i~~l~~H~~  598 (725)
                      -+.+.|+.+|++|+.|+..|.|-.+|..+..                                       .+++++.| .
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~  210 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-I  210 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-C
Confidence            3456666666666666666666666655443                                       33334333 4


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (725)
Q Consensus       599 ~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~  678 (725)
                      .|..+.|-|..-+|++++..|.++.-|+.++. .+..+..-.+.+..++-+|-.. ++.+|...|+|.+|.....+++..
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcchHHH
Confidence            57788899988889999999999999999998 6777777778899999999866 888999999999999998877766


Q ss_pred             Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          679 FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       679 ~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +-+ .++|.+|++.++|.|+++++.|..|+|||+++...++++.
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            554 7899999999999999999999999999999987666654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=5.3e-10  Score=121.50  Aligned_cols=172  Identities=15%  Similarity=0.225  Sum_probs=133.6

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      .+..+.+|...|+.++--.+.+-+++++.|++|++|.++.       ..+-.++..|..+|.++.|-.+.++++++  |+
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4567889999999998888888999999999999999863       34667888999999999999988888877  89


Q ss_pred             eEEEEECCCCCeeeE-EEe-cCCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEE
Q 004885          620 TVRVWDTENPDYSLR-TFT-GHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR  689 (725)
Q Consensus       620 tIrvWDl~~~~~~l~-~~~-~h~~~V~sl~fsP--~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~  689 (725)
                      .|.+||.--+. .+. ... ...+.+..+..-+  +...+++.|+...+|+++|.+.+..+..++.      ..-+.+++
T Consensus       805 giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99999986655 222 111 1112222232223  3343455557889999999999888877764      23488999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.+.|.+++++-+.|+|.+.|.++|+++.+++
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            99999999999999999999999999988765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=1.5e-09  Score=126.37  Aligned_cols=142  Identities=22%  Similarity=0.365  Sum_probs=119.4

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      -++++|+.-+.|-+|....++                  ..+ .+.+|.+.|..+.|+-||++++++|+|.++++|++++
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s  206 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS  206 (967)
T ss_pred             EEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccc
Confidence            377888888999999554221                  011 6789999999999999999999999999999999999


Q ss_pred             CeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCc
Q 004885          587 FTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       587 ~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .+... +.-+|+..|..+.|+|+  +++|++.|.+.++|+.+...  +..+.+|. ..|+.++..++.. +++|++.|+.
T Consensus       207 ~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~  281 (967)
T KOG0974|consen  207 REVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDST  281 (967)
T ss_pred             ccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCcc
Confidence            77665 67789999999999998  99999999999999776543  56888886 4689999887755 7889999999


Q ss_pred             EEEEECCC
Q 004885          665 IRYWSINN  672 (725)
Q Consensus       665 I~IwDl~t  672 (725)
                      |++||+..
T Consensus       282 lk~~~l~~  289 (967)
T KOG0974|consen  282 LKLWDLNG  289 (967)
T ss_pred             hhhhhhhc
Confidence            99999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1.7e-08  Score=114.47  Aligned_cols=163  Identities=19%  Similarity=0.204  Sum_probs=113.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 004885          551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW  624 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~LaSgs~D-g--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~Dgt--IrvW  624 (725)
                      +..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+.....+|+||++.|+. .+.++.  |.+|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34456678999999999988876543 3  58889998776532 2222334457899999997764 555664  7777


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      |+.++.  +..+..+...+..++|+|+|+.++++...++  .|+++|+.+++..............+|+|||++|+..+.
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            887765  4455555566788999999998877776554  477778887765443222233456799999999888765


Q ss_pred             C-C--eEEEEECCCCeE
Q 004885          703 E-N--YISILDVETQVC  716 (725)
Q Consensus       703 D-g--~V~IwDl~tg~~  716 (725)
                      + +  .|.++|+.+++.
T Consensus       370 ~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        370 TNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCCceEEEEEECCCCCe
Confidence            3 3  567789888754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=4.4e-08  Score=111.10  Aligned_cols=161  Identities=13%  Similarity=0.150  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCe
Q 004885          558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDY  631 (725)
Q Consensus       558 V~~i~fSpdg~~LaS-gs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~~~  631 (725)
                      ....+|+|||+.|+. .+.++.  |++||+.+++.. .+..+...+...+|+||+++|+..+. ++  .|.++|+.++. 
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-  341 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-  341 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence            457899999997764 566664  777888776643 45555566778899999998766553 34  46666777665 


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC-C--eE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YI  706 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D-g--~V  706 (725)
                       ...+..........+|+|+|+.++++...++  .|.++|+.++.... +..........|+|+|+.|+..+.+ +  .|
T Consensus       342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l  419 (448)
T PRK04792        342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVL  419 (448)
T ss_pred             -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence             2222222223456799999998777666555  45667888776533 2222223355899999988877653 3  47


Q ss_pred             EEEECCCCeEEEEEeCC
Q 004885          707 SILDVETQVCRLKLQVS  723 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~GH  723 (725)
                      +++++ +|.....+..+
T Consensus       420 ~~~~~-~G~~~~~l~~~  435 (448)
T PRK04792        420 AAVSI-DGRFKARLPAG  435 (448)
T ss_pred             EEEEC-CCCceEECcCC
Confidence            78887 56666666543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.01  E-value=6.6e-09  Score=108.31  Aligned_cols=124  Identities=25%  Similarity=0.427  Sum_probs=100.4

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------------------------------------  586 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----------------------------------------  586 (725)
                      ..+....|...|..+.|+-...++++++.|+.+..-..+.                                        
T Consensus       106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~  185 (404)
T KOG1409|consen  106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN  185 (404)
T ss_pred             hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence            3455668899999999988888899888887654322211                                        


Q ss_pred             -CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          587 -FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       587 -~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                       -..+.++.+|.+.|++++|.|...+|++|..|..|.+||+--.........+|...|..+...+.-. .+++++.||.|
T Consensus       186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i  264 (404)
T KOG1409|consen  186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGI  264 (404)
T ss_pred             CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeE
Confidence             1234567789999999999999999999999999999999877767778889999999998877655 66799999999


Q ss_pred             EEEECC
Q 004885          666 RYWSIN  671 (725)
Q Consensus       666 ~IwDl~  671 (725)
                      .+||++
T Consensus       265 ~~w~mn  270 (404)
T KOG1409|consen  265 VVWNMN  270 (404)
T ss_pred             EEEecc
Confidence            999986

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=1.6e-09  Score=117.16  Aligned_cols=229  Identities=17%  Similarity=0.188  Sum_probs=154.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCC-CCCCcccccccc-----------------
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEV-----------------  539 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~-~~~~~~~~~~~~-----------------  539 (725)
                      +..++..+.|+..|.               .+++||.|..|.+|.+.... ..+...+++...                 
T Consensus       141 H~GcVntV~FN~~Gd---------------~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGD---------------VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             CCCccceeeecccCc---------------eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence            445667778887776               89999999999999775542 111111111111                 


Q ss_pred             -----------CCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---ccCCC---CeE
Q 004885          540 -----------GKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WIT  601 (725)
Q Consensus       540 -----------~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~---~V~  601 (725)
                                 .........+.+..|.+.|..++.-|+.. -|.+++.|+.|.-+|++...+...+   +.+..   ..+
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence                       11112233566778999999999999654 6889999999999999875443322   22333   567


Q ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEECCCCCee-----eEEEe------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885          602 DVRFSPS-LSRLATSSADRTVRVWDTENPDYS-----LRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       602 ~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~-----l~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD  669 (725)
                      +|+.+|- ...+++++.|-.+++||.+.-...     +..|.      .....|++++|+.++..++++-. |-.|+++.
T Consensus       286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~  364 (559)
T KOG1334|consen  286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFN  364 (559)
T ss_pred             eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEec
Confidence            8999995 458999999999999998753311     12222      22356999999988888887666 66788885


Q ss_pred             CCC--C----------eeEE-EEec---CCCeEEEE-EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          670 INN--G----------SCAG-VFKC---QSGATQMR-FQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       670 l~t--~----------~~v~-~~~~---~~~V~sv~-fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      -.-  |          ..+. .+++   ...|..+- |-|...|+++|+..|.|.||+-.++++|.-++|
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence            432  2          1122 2444   23366665 467778999988899999999998876655444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.96  E-value=6e-08  Score=107.55  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=122.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V  643 (725)
                      |-..|+-|...|.|.+|++..++....+.  .|.+.|.++.++-+-..|.+++.|+.+.+|+..... .++.+.+....+
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~  147 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLV  147 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCcc
Confidence            34468888889999999999998887775  689999999999998999999999999999999877 788888888899


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC-----CCEEEEEEc-CCeEEEEECCC
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-----LGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd-----g~~Lla~s~-Dg~V~IwDl~t  713 (725)
                      .+++.+||+. ++++++  +.|++||+++++.+..|.+ .+.|.++.|-.+     |.+++++.. +..|.+|-++.
T Consensus       148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999987 666665  7899999999999999998 567999999876     677776644 56677776544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.94  E-value=1.7e-06  Score=94.83  Aligned_cols=163  Identities=18%  Similarity=0.250  Sum_probs=112.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--EE--EEe-ccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 004885          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFT--VK--STL-EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE  627 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~--~i--~~l-~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~  627 (725)
                      .....++.|+||+++++++.. ...|++|+++...  ..  ..+ .........++|+|+++++++.. .+++|.+|++.
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            355789999999998887643 3479999987644  21  222 23346678999999999886665 47899999998


Q ss_pred             CCCeee---EEEec----C--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CCe--eEEEEec-CCCeEEEEEecC
Q 004885          628 NPDYSL---RTFTG----H--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFKC-QSGATQMRFQPR  693 (725)
Q Consensus       628 ~~~~~l---~~~~~----h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~--~v~~~~~-~~~V~sv~fspd  693 (725)
                      .....+   ..+..    .  ......|+++|+|++++++...+..|.+|+++  ++.  .+..+.. ......+.++|+
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence            322112   12211    1  12578999999999999888888999999994  333  3334443 445899999999


Q ss_pred             CCEEEEEEc-CCeEEEEEC--CCCeEE
Q 004885          694 LGRILAAAI-ENYISILDV--ETQVCR  717 (725)
Q Consensus       694 g~~Lla~s~-Dg~V~IwDl--~tg~~v  717 (725)
                      |++|+++.. ++.|.+|++  ++|...
T Consensus       303 g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  303 GRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            999998876 578999976  577544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=1.2e-08  Score=108.41  Aligned_cols=164  Identities=16%  Similarity=0.206  Sum_probs=112.8

Q ss_pred             ccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004885          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (725)
Q Consensus       501 ~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~  580 (725)
                      ...+..++++.+..++..-+++......             +..+.....+......|+.+..+......-.++....+.
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeee
Confidence            3455566888877777765664333211             111222223333333455555443333333455566777


Q ss_pred             EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       581 IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      +|.+..+.+. .+-||-..+++|+|+||+.+|+|+..|..|||-.+......-..+.||+..|..++.-++-  .|++++
T Consensus       136 i~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~s  212 (390)
T KOG3914|consen  136 ILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGS  212 (390)
T ss_pred             eecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecC
Confidence            7777664443 4558999999999999999999999999999988876653334567899999999998763  577999


Q ss_pred             CCCcEEEEECCCCeeEEEEe
Q 004885          661 NNSEIRYWSINNGSCAGVFK  680 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~  680 (725)
                      .|++|++||+++|+++.++.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999999887765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.90  E-value=2e-08  Score=104.13  Aligned_cols=160  Identities=15%  Similarity=0.168  Sum_probs=116.3

Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      +.|.-|.|..|..++++ ...|+.|.+|++...+-...+.+...++..++|+|||+. |.+...|-.|.||.+.+...  
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence            55778899888776655 566889999999988877788888899999999999965 56677899999999998762  


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeC------------------------------------CCcEEEEECCCCeeEE
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------NSEIRYWSINNGSCAG  677 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~------------------------------------Dg~I~IwDl~t~~~v~  677 (725)
                      ..+.--...+..++|+|+|+. .+.++.                                    +..+.|||---.-.+.
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             EEecccccCceeEEECCCCce-eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            222222345688899999873 333321                                    1234445433222333


Q ss_pred             EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       678 ~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      .++..-++..+.|+|.+.+|++|+.|+.++|.+--+.+.+.
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence            44446789999999999999999999999998876655443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=6e-08  Score=107.50  Aligned_cols=157  Identities=15%  Similarity=0.185  Sum_probs=125.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 004885          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV  621 (725)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~---H~~~V~~Iafs------P--------------d~~~Lasgs~DgtI  621 (725)
                      |-..++|....||.++|||+...+....|..   -++..++..|.      |              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456899999999999999987766555432   13445555552      1              22357778889999


Q ss_pred             EEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEE
Q 004885          622 RVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       622 rvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Ll  698 (725)
                      -+|++..++ ....+  .+|.+.|.++.++.+-. .|.+++.|+.|..|+...+..++.++. ...+.+++.+||+..++
T Consensus        83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecCCe-EEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            999999887 33444  47999999999988766 566999999999999999999999987 66799999999998888


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          699 AAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      +++  +.|++||+++++.+.+|.||.+
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s  185 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGS  185 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCc
Confidence            775  6899999999999999999965

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.88  E-value=3.5e-07  Score=94.95  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=101.4

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeeEEEec--C
Q 004885          566 DGKLLATGG-HDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTG--H  639 (725)
Q Consensus       566 dg~~LaSgs-~Dg~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-IrvWDl~~~~~~l~~~~~--h  639 (725)
                      +..+||.-| .-|.|.|-|+...+.  ...+.+|.+.|.||+.+-+|.+|||++..|+ |||||..+++ .+..++.  .
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-~l~E~RRG~d  225 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-LLQELRRGVD  225 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-EeeeeecCCc
Confidence            334555433 458999999976544  4678899999999999999999999999886 7999999998 5655542  2


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE------------------------EEec-CCCeEEEEEecCC
Q 004885          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------------------------VFKC-QSGATQMRFQPRL  694 (725)
Q Consensus       640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~------------------------~~~~-~~~V~sv~fspdg  694 (725)
                      ...|.+++|+|+.. +||++++.|+|+||.++....-.                        .+.. .+...-++|..+-
T Consensus       226 ~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~  304 (346)
T KOG2111|consen  226 RADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSET  304 (346)
T ss_pred             hheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCC
Confidence            35699999999987 67788889999999987422110                        0111 2334455666665


Q ss_pred             CEEEEEEcCCeEE
Q 004885          695 GRILAAAIENYIS  707 (725)
Q Consensus       695 ~~Lla~s~Dg~V~  707 (725)
                      ..+++.+.||.-+
T Consensus       305 nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  305 NTVIAICADGSYY  317 (346)
T ss_pred             CeEEEEEeCCcEE
Confidence            6677777777654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=4.8e-09  Score=113.44  Aligned_cols=170  Identities=21%  Similarity=0.342  Sum_probs=140.2

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV  621 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsP--d~~~Lasgs~DgtI  621 (725)
                      +.....|..|.+-|..|.|+..|..|++||.|..|.+||.........+ .+|...|.--.|-|  +...|++++.||.|
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            3455678899999999999999999999999999999999887766555 57888888888988  45679999999999


Q ss_pred             EEEECCCCCeee--EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CC---CeEEEEEec
Q 004885          622 RVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP  692 (725)
Q Consensus       622 rvWDl~~~~~~l--~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~---~V~sv~fsp  692 (725)
                      ++=.+...+++.  ..+..|.+.|..++..|+..+-|.+|+.|+.|.-+|++.+.....+.+    ..   ....|+..|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            998887655333  455679999999999999999999999999999999998766555543    22   468889999


Q ss_pred             CCC-EEEEEEcCCeEEEEECCCC
Q 004885          693 RLG-RILAAAIENYISILDVETQ  714 (725)
Q Consensus       693 dg~-~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ... .+++++.|-.++|||.+.-
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             CCccccccCChhhhhhhhcccch
Confidence            877 5777788999999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.85  E-value=2.8e-08  Score=102.28  Aligned_cols=204  Identities=17%  Similarity=0.283  Sum_probs=136.3

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC------------CCCeEEEEEcCCCC--EE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK--LL  570 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~V~~i~fSpdg~--~L  570 (725)
                      .+.|+++|...|.|.+|.-....              +..++.+..+.+|            ...|..|.|..++.  .+
T Consensus        37 tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          37 TGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            33499999999999999322221              1112222222222            25688899976543  56


Q ss_pred             EEEeCCCcEEEEECCCCe-------------------------------------EE-----EEe-ccCCCCeEEEEEcC
Q 004885          571 ATGGHDKKAVLWCTESFT-------------------------------------VK-----STL-EEHTQWITDVRFSP  607 (725)
Q Consensus       571 aSgs~Dg~V~IWdl~~~~-------------------------------------~i-----~~l-~~H~~~V~~IafsP  607 (725)
                      +..+.|++|++|.+....                                     .+     +++ ..|..-|.+|.|..
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            667789999999763210                                     00     111 34677788999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe--eeEEEecCC-----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEE--
Q 004885          608 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--  677 (725)
Q Consensus       608 d~~~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~-----~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~--  677 (725)
                      |...++++ .|-.|.+|+++-...  .+..++.|.     ..|++..|+|....++...+..|.|++-|++... |..  
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            87777766 477899999876543  344455554     4589999999877777777779999999998422 111  


Q ss_pred             -EE----e--------c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCC
Q 004885          678 -VF----K--------C-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQVSH  724 (725)
Q Consensus       678 -~~----~--------~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg-~~v~~l~GH~  724 (725)
                       .+    .        . ...|..+.|+++|+++++ -.--+|+|||++.. .|++++.-|.
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceeechHH
Confidence             01    0        0 245788999999887764 34478999999875 7888887663

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.84  E-value=6.1e-08  Score=99.49  Aligned_cols=171  Identities=20%  Similarity=0.201  Sum_probs=119.0

Q ss_pred             ceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeEEEE-eccCCCCeEEEEEcC-CCCEEEEEeCC
Q 004885          543 FTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSAD  618 (725)
Q Consensus       543 ~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~-~~~~i~~-l~~H~~~V~~IafsP-d~~~Lasgs~D  618 (725)
                      ..++.+...++|..++..+.|+. +-+++++|+.|+.+..||++ ..+.+.. .+-|...|.+|.-+| ...+|+||+.|
T Consensus       153 ~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD  232 (339)
T KOG0280|consen  153 MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD  232 (339)
T ss_pred             eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence            34455668889999999999986 45689999999999999998 3444443 567899999998887 57899999999


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCe-EEEEEeCCCcEEEEECCCCeeE--EEEecCCC----eEEEEEe
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCA--GVFKCQSG----ATQMRFQ  691 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~-llaSgs~Dg~I~IwDl~t~~~v--~~~~~~~~----V~sv~fs  691 (725)
                      ..|++||.++...++..-. -.+.|+.++++|.... ++++|..+| .+|.++..+...  ..+.....    +..-.|.
T Consensus       233 e~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd  310 (339)
T KOG0280|consen  233 ECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD  310 (339)
T ss_pred             cceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccc
Confidence            9999999997664554432 3478999999997443 455665554 778877654333  12222222    3444453


Q ss_pred             cCCCEEEEEEc-CCeEE-EEECCCCe
Q 004885          692 PRLGRILAAAI-ENYIS-ILDVETQV  715 (725)
Q Consensus       692 pdg~~Lla~s~-Dg~V~-IwDl~tg~  715 (725)
                      .....|++|+. |+.|+ +|-.-|+.
T Consensus       311 ~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  311 SKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cccceeeeeeccccceeeeeeeccCC
Confidence            33345666654 67655 77655543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.84  E-value=1.9e-06  Score=93.82  Aligned_cols=162  Identities=13%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecc----------------C---C------------CCeEEE-
Q 004885          558 VESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEE----------------H---T------------QWITDV-  603 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~----------------H---~------------~~V~~I-  603 (725)
                      -..++++|||++|++...  +..|.|.|+.+++.+..+.-                |   .            ..+... 
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence            347888999998887653  67899999887665543210                0   0            001111 


Q ss_pred             -------------EEcC-CCCEEEEEeCCCeEEEEECCCCCe----eeEEEec-------CCCCeEEEEEccCCCeEEEE
Q 004885          604 -------------RFSP-SLSRLATSSADRTVRVWDTENPDY----SLRTFTG-------HSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       604 -------------afsP-d~~~Lasgs~DgtIrvWDl~~~~~----~l~~~~~-------h~~~V~sl~fsP~g~~llaS  658 (725)
                                   .|.+ +++++++... |+|.+.|+.....    .+..+..       ..+.+.-++++|+++.+++.
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence                         1223 6777766665 9999999654331    1222211       12334459999999988875


Q ss_pred             Ee---------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885          659 CD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL  720 (725)
Q Consensus       659 gs---------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s-~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ..         ..+.|.++|..+++.+..+.....+..|+|+||++ +|++.. .++.|.|+|+.+++.++++
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            42         22589999999999999999888999999999999 777666 4788999999999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=3.5e-08  Score=105.05  Aligned_cols=159  Identities=10%  Similarity=0.125  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD  630 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~~  630 (725)
                      +..+.+++++++||++..++...++++....    .+.++.. ...-+.+.|..+...+..+.   ....+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            4556678888899988888887777765422    2222222 23344555555555544443   344566666655  


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .+.+.+.||-.-++.|+|+||+. ++++++.|..|||-.......+..|.  |..-|..++.-++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            25677789999999999999987 77799999999998887766666554  3566999998887 66899999999999


Q ss_pred             EECCCCeEEEEEe
Q 004885          709 LDVETQVCRLKLQ  721 (725)
Q Consensus       709 wDl~tg~~v~~l~  721 (725)
                      ||+++|++++++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999987764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.3e-07  Score=104.53  Aligned_cols=136  Identities=17%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004885          556 SKVESCHFSPDGKLLATGG-HDKKAVLW--CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN  628 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IW--dl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~  628 (725)
                      +.+...+|+|||+.|+..+ .++...||  ++.. +.....+..+...+....|+||+++|+..+.+   ..|.+||+.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3456789999999777655 46655555  4432 23344455555677889999999988876543   4699999988


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeEEEEEecC
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspd  693 (725)
                      +.  ...+......+..+.|+|+|+.+++++..  ...|++||+.+++........+.+...+|+|.
T Consensus       361 g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        361 GR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence            76  33443334467889999999987776653  34688999998877666655566778889875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.81  E-value=1.1e-06  Score=97.07  Aligned_cols=197  Identities=13%  Similarity=0.115  Sum_probs=127.6

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl  584 (725)
                      .+++.+.+.|+.|.+++..                   +.+.+..++... ...++++|+||++++++. .++.|.|+|.
T Consensus        48 gr~~yv~~rdg~vsviD~~-------------------~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLA-------------------TGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             SSEEEEEETTSEEEEEETT-------------------SSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEECC-------------------cccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc
Confidence            3477777889999999432                   224555554433 468899999999888765 6899999999


Q ss_pred             CCCeEEEEeccC-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885          585 ESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       585 ~~~~~i~~l~~H-------~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      ++.+.+..+...       ...+..|..+|....++..-. .+.|-+.|......................|+|++++++
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence            999988877532       346788888888775655544 478888898776544444444556788999999999888


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg----------~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++...+..|-++|..+++.+..+..     ..++..+ .+|..          ...++.-..+.+.+||..+.+.+++++
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~  266 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP  266 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE
T ss_pred             ecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE
Confidence            8877788999999999988877653     1223322 23322          222233334567789999999999887


Q ss_pred             CC
Q 004885          722 VS  723 (725)
Q Consensus       722 GH  723 (725)
                      ..
T Consensus       267 ~~  268 (369)
T PF02239_consen  267 TQ  268 (369)
T ss_dssp             -S
T ss_pred             CC
Confidence            53

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.7e-07  Score=101.84  Aligned_cols=151  Identities=21%  Similarity=0.263  Sum_probs=110.7

Q ss_pred             EEEEcCCCC-E--EEEEeCCC---------cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 004885          560 SCHFSPDGK-L--LATGGHDK---------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD  625 (725)
Q Consensus       560 ~i~fSpdg~-~--LaSgs~Dg---------~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~DgtIrvWD  625 (725)
                      .+.|++-|. +  |++..-|+         ++++.++....+...+. ..++|.++.|+|+++-++++-  .-.++.|||
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            466777665 2  23333344         68888887545544444 479999999999998776653  456899999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-  702 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-  702 (725)
                      ++-.  ++..|.  .++=+++-|+|.|+.++++|-.  -|.|-|||+.+.+++..++. ...+-+.|+|||.++++++. 
T Consensus       301 lr~~--~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  301 LRGK--PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCCC--EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEecc
Confidence            9843  344443  4666889999999966655533  47899999999999998886 45677889999999999876 


Q ss_pred             -----CCeEEEEECCCCeEE
Q 004885          703 -----ENYISILDVETQVCR  717 (725)
Q Consensus       703 -----Dg~V~IwDl~tg~~v  717 (725)
                           |+.++||+.. |..+
T Consensus       376 PRlrvdNg~Kiwhyt-G~~l  394 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYT-GSLL  394 (566)
T ss_pred             ccEEecCCeEEEEec-Ccee
Confidence                 7899999975 4444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=2.1e-08  Score=112.77  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=133.3

Q ss_pred             EEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          549 QLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      ..+.+|+..|+++-|+|.. ..+++|+-|..|..||+++ ..++..+..-...-..|+|+.....+++.+...-|+|||+
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            3567999999999999954 4899999999999999987 3455555544566788999886666667777888999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEecCCCeEEEEEecCCCEEEE--EEc
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILA--AAI  702 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~~~~V~sv~fspdg~~Lla--~s~  702 (725)
                      +.+..++..+++|...|..++|.......+.+++.|++|++||.....  ..+......+|..-++-|-|.-+++  ...
T Consensus       188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G  267 (1081)
T KOG0309|consen  188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG  267 (1081)
T ss_pred             cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence            999989999999999999999987655567799999999999987543  3334444566777777775543222  222


Q ss_pred             CCeEE---------EEECCCC-eEEEEEeCCCC
Q 004885          703 ENYIS---------ILDVETQ-VCRLKLQVSHS  725 (725)
Q Consensus       703 Dg~V~---------IwDl~tg-~~v~~l~GH~s  725 (725)
                      ++.|.         .|++.++ +.|++|.||+.
T Consensus       268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D  300 (1081)
T KOG0309|consen  268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD  300 (1081)
T ss_pred             CeeeeeccccchhhhhccccCCcceeeecCcch
Confidence            33444         4444444 89999999974

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.79  E-value=1.1e-07  Score=99.29  Aligned_cols=160  Identities=17%  Similarity=0.285  Sum_probs=117.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccC-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR  622 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H-----~~~V~~IafsPd-~~~Lasgs~DgtIr  622 (725)
                      .+|+-.|.+|.++.|...++++. |=.|.+|+++-.   -.+..++.+     +..|++..|||. ...|+-++..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            47999999999999999998874 788999998531   122223333     467899999995 56777888899999


Q ss_pred             EEECCCCCeeeE---------------EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecC----
Q 004885          623 VWDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQ----  682 (725)
Q Consensus       623 vWDl~~~~~~l~---------------~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~----  682 (725)
                      +.|++....|..               .|.+-...|..+.|++.|++++ +-+ =-+|++||+. ..+++.++..+    
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHH
Confidence            999985432211               1222335689999999999655 443 3689999994 45566555421    


Q ss_pred             ---------CC---eEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          683 ---------SG---ATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       683 ---------~~---V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                               ..   -..++|+.++.++++|+..+.++||++..|
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                     11   256889999999999999999999997655

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.78  E-value=2.5e-06  Score=93.52  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=113.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885          556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~----Dg~V~IWdl~~~--~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl  626 (725)
                      .....++++|++++|+++.+    ++.|..|.+...  .  .+............|+++|++++|+++.. +++|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44677899999999998877    468999988653  3  33333333456678999999999999985 889999999


Q ss_pred             CCCCeeeEE---Ee----------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eE--EEE--ecCCCeEE
Q 004885          627 ENPDYSLRT---FT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CA--GVF--KCQSGATQ  687 (725)
Q Consensus       627 ~~~~~~l~~---~~----------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v--~~~--~~~~~V~s  687 (725)
                      .........   +.          .......++.|+|++++++++.-....|++|++....  ..  ..+  ....+...
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            875422221   11          1235578999999999888776666789999998654  32  222  23677899


Q ss_pred             EEEecCCCEEEEEEc-CCeEEEEECC
Q 004885          688 MRFQPRLGRILAAAI-ENYISILDVE  712 (725)
Q Consensus       688 v~fspdg~~Lla~s~-Dg~V~IwDl~  712 (725)
                      ++|+|+++++++... ++.|.+|++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeec
Confidence            999999999888776 7899999998

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.73  E-value=5.4e-08  Score=100.99  Aligned_cols=140  Identities=16%  Similarity=0.276  Sum_probs=111.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEEec
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      -++|||+|++||+++.- .+.|-|.++......+.. -..|..|.|.-|..+++.+ ..|+.|.+|++..++. ...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence            57899999999999865 888999887665544432 3567788999887776554 5688999999998873 445555


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ...++.+++|+|+|+.++.+..-|-.|.||.+.+.++...--.+..+..++|+|||++.+.++.
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence            6678999999999999999999999999999998877665544677899999999988776654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.69  E-value=5.2e-06  Score=103.11  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=110.8

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---------------CCCeEEEEEcCCCCEEEEE-eCCCeE
Q 004885          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRLATS-SADRTV  621 (725)
Q Consensus       559 ~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H---------------~~~V~~IafsPd~~~Lasg-s~DgtI  621 (725)
                      .+++|+| ++.++++.+.++.|++||..++... .+.+.               -.....|+|+|++.+|+++ ..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5899999 5666677778899999998776543 22111               1234679999998865544 557899


Q ss_pred             EEEECCCCCeeeEE------------EecC--------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004885          622 RVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC  681 (725)
Q Consensus       622 rvWDl~~~~~~l~~------------~~~h--------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~  681 (725)
                      ++||+.++...+..            +..+        -.....|+|+++|. ++++...+++|++||..++.+......
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            99999876522111            0000        11236889999987 777888899999999998776544321


Q ss_pred             C--------------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          682 Q--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       682 ~--------------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      .              .....|+++++|..+++-+.++.|++||+++++.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            1              1467899999998777777789999999999865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=6e-06  Score=92.82  Aligned_cols=155  Identities=10%  Similarity=0.045  Sum_probs=108.6

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCC--CeEEEEECCCC
Q 004885          557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP  629 (725)
Q Consensus       557 ~V~~i~fSpdg~~-LaSgs~D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~D--gtIrvWDl~~~  629 (725)
                      .+....|+|||+. ++..+.+   ..|+++|+.+++...... ..+.+...+|+||++.|+. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6789999999984 6654443   468899998876654443 4556777889999987654 3333  46777888776


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC----
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----  703 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D----  703 (725)
                      .  ...+..+........|+|||+.++++.+..+  .|+++|+.+++.........  ....|+|||++|+..+..    
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence            5  3444444443456789999998888776544  58888998877644433211  235899999998887653    


Q ss_pred             -----CeEEEEECCCCeE
Q 004885          704 -----NYISILDVETQVC  716 (725)
Q Consensus       704 -----g~V~IwDl~tg~~  716 (725)
                           ..|.+.|+.++..
T Consensus       344 ~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             cCCCCcEEEEEECCCCCe
Confidence                 3688899988854

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=5.7e-08  Score=104.37  Aligned_cols=200  Identities=17%  Similarity=0.150  Sum_probs=144.5

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW  582 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IW  582 (725)
                      .+..|+.+++.|+.++.|.-.                ...-...+..+..|-+.|.+++.+-++.+++|.+. |+.++++
T Consensus        18 tka~fiiqASlDGh~KFWkKs----------------~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen   18 TKAKFIIQASLDGHKKFWKKS----------------RISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ehhheEEeeecchhhhhcCCC----------------CccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            344699999999999999211                01234566778899999999999999999999777 9999999


Q ss_pred             ECCCCeEEEEec--cCCCCeEEEEEcCCC--CEEEEE-eCCCeEEEEECCCCCeeeEEE-ecCCCCeEEEEEccCCCeEE
Q 004885          583 CTESFTVKSTLE--EHTQWITDVRFSPSL--SRLATS-SADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       583 dl~~~~~i~~l~--~H~~~V~~IafsPd~--~~Lasg-s~DgtIrvWDl~~~~~~l~~~-~~h~~~V~sl~fsP~g~~ll  656 (725)
                      |+++...+..++  .-.+.+. +..++..  ..|+++ -.++.|.|+|-.........+ .-|..+|.++.+.+.+. .+
T Consensus        82 DvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~  159 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA  159 (558)
T ss_pred             EeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence            998765443322  1122222 2223321  134443 347889999987665333333 45889999999999988 55


Q ss_pred             EEEeCCCcEEEEECCC------CeeEEEEe----------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          657 CSCDNNSEIRYWSINN------GSCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t------~~~v~~~~----------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ++.+..|-|..|....      .+....++          +....+++.|+|++..+.+-+.|..|+++++++|+.+..+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            6888889999999872      22222222          3456899999999999999999999999999999888766


Q ss_pred             e
Q 004885          721 Q  721 (725)
Q Consensus       721 ~  721 (725)
                      .
T Consensus       240 D  240 (558)
T KOG0882|consen  240 D  240 (558)
T ss_pred             h
Confidence            4

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=1.5e-05  Score=89.59  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=101.1

Q ss_pred             CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaS-gs~D--g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~  627 (725)
                      ..+.+.+..|+|||+.|+. .+.+  ..|.++|+.++... .+..+........|+||++.|+-.+. .+  .|.+.|+.
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            3455677889999986654 3333  46888888777643 44444443455689999987766553 33  57788888


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEE
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla  699 (725)
                      ++.....++.+.    ....|+|+|+.+++++..+        ..|.+.|+.++.... +..........|+|||+.|+.
T Consensus       310 ~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        310 SGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             CCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEE
Confidence            766312222221    1248999999887776543        368888998876543 332233446889999998877


Q ss_pred             EEcC---CeEEEEECCCC
Q 004885          700 AAIE---NYISILDVETQ  714 (725)
Q Consensus       700 ~s~D---g~V~IwDl~tg  714 (725)
                      .+.+   ..|.++++...
T Consensus       385 ~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        385 IKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEccCCcEEEEEEecCCC
Confidence            7653   34778888653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.3e-06  Score=96.52  Aligned_cols=134  Identities=17%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004885          554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN  628 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---gtIrvWDl~~  628 (725)
                      ..++|.|+.|+|+++-++++  -.=-+|.|||++ +.++..+.  .++-+++-|+|.|++|+.++.+   |.|-|||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            36899999999999866554  445689999986 45554553  5778899999999999999875   7899999999


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCC
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL  694 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-----~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg  694 (725)
                      .+ ++..+....  .+-++|+|+|.+++.+.+     .|..|+||+.. |..+...........++|-|..
T Consensus       346 ~K-~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  346 RK-LIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPFN  412 (566)
T ss_pred             hh-hccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeecC
Confidence            66 677776543  456899999997664333     37789999987 6666554433367788887653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.58  E-value=6.2e-06  Score=83.99  Aligned_cols=205  Identities=11%  Similarity=0.044  Sum_probs=130.4

Q ss_pred             cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEe
Q 004885          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGG  574 (725)
Q Consensus       496 a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs  574 (725)
                      .+....+-....+|+.|+.-+...+|......              +    .......|...|+-+.=.-| .-.+..++
T Consensus        74 ~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~--------------~----h~~~cd~snn~v~~~~r~cd~~~~~~i~s  135 (344)
T KOG4532|consen   74 TFTPGSFINKCVTLADGGASGQFDLFACNTND--------------G----HLYQCDVSNNDVTLVKRYCDLKFPLNIAS  135 (344)
T ss_pred             cccchHhhccccEEEeccccceeeeecccCcc--------------c----ceeeecccccchhhhhhhcccccceeecc
Confidence            33334444555689999999999999433221              0    11111222222221111111 12467778


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeE-EEecCCCCeEEEEEccCC
Q 004885          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR-TFTGHSTTVMSLDFHPSK  652 (725)
Q Consensus       575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~-~~~~h~~~V~sl~fsP~g  652 (725)
                      .|.++++++++.+.....+.-..-.+..++++++++++++.+....|..|.++.... .+. ........-.+..|+...
T Consensus       136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            888898888865433322221112388999999999999999999999999987553 233 233344556778898875


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEE
Q 004885          653 EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLK  719 (725)
Q Consensus       653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~--~Lla~s~Dg~V~IwDl~tg~~v~~  719 (725)
                      . .+|++..||++.|||++.-......+      +.+.+..+.|++.|.  .|+..-.-+.+.|.|+++++-...
T Consensus       216 ~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  216 L-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             c-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            5 88899999999999999643332221      357799999998654  333333357899999999865443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.58  E-value=1.5e-05  Score=84.44  Aligned_cols=162  Identities=12%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEEE--EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 004885          553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW  624 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~--~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvW  624 (725)
                      .+.+.++-++|+|+.++|.++-.   +|.|-.|.++.  ++...  .......+-+.|++++++++|+++.. .+.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            44566889999999999888755   46777777664  44321  11222334488999999999999986 5799999


Q ss_pred             ECCCCCee--eEEEecCCCC----------eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE----EecCCCeEEE
Q 004885          625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM  688 (725)
Q Consensus       625 Dl~~~~~~--l~~~~~h~~~----------V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~----~~~~~~V~sv  688 (725)
                      -+......  +.....|.+.          +....|.|+++++++..-.--+|.+|++..|.....    ++...+...|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            98764312  2223345555          899999999996554443445799999997765432    2346778999


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885          689 RFQPRLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       689 ~fspdg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      .|+|++++..+..+ +++|.||.....
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            99999998887777 899999998873

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.57  E-value=2e-05  Score=81.36  Aligned_cols=163  Identities=15%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW  624 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-------H~~~V~~IafsPd------~~~Lasgs~DgtIrvW  624 (725)
                      =+-++||||+.+||.+...|+|+|||+.... +..+..       -...|..+.|.+.      ...|++...+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            5679999999999999999999999987533 333321       2355677777552      2357777888888877


Q ss_pred             ECCCC---C-eeeEEE--ec-CCCCeEEEEEccCCCeEEEEEeCCC----------cEEEEECCCCeeE-----------
Q 004885          625 DTENP---D-YSLRTF--TG-HSTTVMSLDFHPSKEDLLCSCDNNS----------EIRYWSINNGSCA-----------  676 (725)
Q Consensus       625 Dl~~~---~-~~l~~~--~~-h~~~V~sl~fsP~g~~llaSgs~Dg----------~I~IwDl~t~~~v-----------  676 (725)
                      -+..+   . .....|  .. +...|.++.|+|..+.+++.|+...          -+..|-+-++.+.           
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            75321   1 122222  22 3568999999999886666654322          2555654322110           


Q ss_pred             ----------E-----EEe----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          677 ----------G-----VFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       677 ----------~-----~~~----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                                +     .+.    ....|..|..+|||..|++...+|.|.+|++-+-++...++
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                      0     010    14568999999999999999999999999999887776654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=1.5e-05  Score=84.59  Aligned_cols=207  Identities=14%  Similarity=0.177  Sum_probs=129.7

Q ss_pred             CccCCCCcEEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CC
Q 004885          500 NQLTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DK  577 (725)
Q Consensus       500 ~~~~~~~~~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg  577 (725)
                      ..++...+|+.++... +.|.++-..++.........+.....+..      .+--+..+.+..|.|++++|++++- -.
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~------~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH------ERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC------ccccCCccceeeeCCCCCEEEEeecCCc
Confidence            3456667788777764 56777754443222111111111111100      0011222889999999999988753 23


Q ss_pred             cEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec---------CCCCeE
Q 004885          578 KAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG---------HSTTVM  644 (725)
Q Consensus       578 ~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~---------h~~~V~  644 (725)
                      +|.+|+++.+.....-   ..-...-..|.|||++++.++.+. +++|.+|..+.....+..+..         -.....
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            6999999876543211   123456789999999999876654 999999999875322333221         124578


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec----CCCeEEEEEecCCCEEEEEEcC-CeEEEEECC
Q 004885          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC----QSGATQMRFQPRLGRILAAAIE-NYISILDVE  712 (725)
Q Consensus       645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~~~~----~~~V~sv~fspdg~~Lla~s~D-g~V~IwDl~  712 (725)
                      +|..+++|+.++++--....|.+|.+... ..+..+..    ........|++.+++|+++..+ ..|.||.+.
T Consensus       248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            89999999976665555567888887642 22333222    2337889999999999999885 568888664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.54  E-value=2e-07  Score=94.30  Aligned_cols=198  Identities=12%  Similarity=0.170  Sum_probs=123.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      .++++..++.+.++     ...+....+.|+...+  ....+++.-|++.-.+-+.+-.++.++++..||.+.+++.+..
T Consensus        49 ~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~  121 (319)
T KOG4714|consen   49 ILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD  121 (319)
T ss_pred             eeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH
Confidence            55666666666665     2223333344433222  3344555566665555555557788999999999999998652


Q ss_pred             eE-EEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          588 TV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       588 ~~-i~~l~~H~~~V~~IafsPd~~~Lasgs~-----DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      .. .+.+..-...-.+.++...++.|.++..     -+..+.|+++-.+..+.... ....|++++-+|....++++|+.
T Consensus       122 ~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~  200 (319)
T KOG4714|consen  122 LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTD  200 (319)
T ss_pred             HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecC
Confidence            11 1111111111122223333444444321     23456777765442222222 22349999999999999999999


Q ss_pred             CCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCC
Q 004885          662 NSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRL-GRILAAAIENYISILDVET  713 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg-~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ||.|.+||.++......+ + ++..+..|-|+|.. ..|++++.||.+.-||..+
T Consensus       201 dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  201 DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999999999987544333 2 36789999999964 5799999999999999875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.53  E-value=2.2e-07  Score=113.03  Aligned_cols=166  Identities=16%  Similarity=0.305  Sum_probs=136.0

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      .++.+-..|.++.-+|...+.+||+.||.|++|....+..+.+++. -...|+.+.|+.+|..+..+..||.+.+|.+. 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3455667788999999999999999999999999887777766642 23789999999999999999999999999998 


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCC---CeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINN---GSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t---~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ++ +......|.....+++|-..   ++++++   .++.+.+||..-   ..++. .-|.++++++++.|....|++|+.
T Consensus      2282 pk-~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PK-PYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             Cc-ceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence            34 67888899999999999863   555554   567899999753   23444 345788999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEe
Q 004885          703 ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +|.|++||++-.+.+++|+
T Consensus      2357 ~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhh
Confidence            9999999999887777664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.50  E-value=1.8e-06  Score=99.77  Aligned_cols=157  Identities=18%  Similarity=0.214  Sum_probs=120.8

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------D  618 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---------D  618 (725)
                      .+...-..+.|+-++.  +++++++|...|+|.+-|.++.+.++++..|++.|.+++.  .|+.|++|+.         |
T Consensus       170 ~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D  245 (1118)
T KOG1275|consen  170 TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD  245 (1118)
T ss_pred             eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence            3333333444666666  6889999999999999999999999999999999998766  4889999986         6


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE---CCCCee-EEEE-ecCCCeEEEEEecC
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSC-AGVF-KCQSGATQMRFQPR  693 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD---l~t~~~-v~~~-~~~~~V~sv~fspd  693 (725)
                      ..|+|||++... .+.-+.-+.++ .-+.|+|.-...+|.++..|...+.|   +.+... +..+ .....+..++++++
T Consensus       246 ~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn  323 (1118)
T KOG1275|consen  246 PFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSN  323 (1118)
T ss_pred             chhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCC
Confidence            678999999866 34444334343 56889998777788888889999999   333211 1112 22566999999999


Q ss_pred             CCEEEEEEcCCeEEEEE
Q 004885          694 LGRILAAAIENYISILD  710 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwD  710 (725)
                      +..++.+..+|.|.+|.
T Consensus       324 ~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  324 GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CceEEEecccCcEeeec
Confidence            99999999999999997

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=4.2e-07  Score=99.39  Aligned_cols=193  Identities=16%  Similarity=0.170  Sum_probs=128.0

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      ++-+.+++.|++|++|....+.|++            .+-....++..|+.+|.++.|-.+-++++++  |+.|.+||.-
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF  812 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF  812 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence            3456788999999999665554332            1223445678999999999999888888877  8899999976


Q ss_pred             CCeEEEEec--cCCCCeEEEEEcCC--CCEE-EEEeCCCeEEEEECCCCCee--eEEE--ecCCCCeEEEEEccCCCeEE
Q 004885          586 SFTVKSTLE--EHTQWITDVRFSPS--LSRL-ATSSADRTVRVWDTENPDYS--LRTF--TGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       586 ~~~~i~~l~--~H~~~V~~IafsPd--~~~L-asgs~DgtIrvWDl~~~~~~--l~~~--~~h~~~V~sl~fsP~g~~ll  656 (725)
                      -++.+....  ...+.+..|..-++  ...+ +.|+...+|+++|.+..+..  ++..  .+....+.+++..+.|++ +
T Consensus       813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~-l  891 (1034)
T KOG4190|consen  813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK-L  891 (1034)
T ss_pred             ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch-h
Confidence            665544221  11233444444443  3333 44467899999999987632  2222  233466899999999984 5


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE-EECCCC
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI-LDVETQ  714 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I-wDl~tg  714 (725)
                      +++-.+|+|.+.|.++|+.+..+.. ......++ .|....++....|.++.| |..-.|
T Consensus       892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             hHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            5666789999999999999987764 33333333 233355555556666666 655444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.47  E-value=9.9e-07  Score=92.38  Aligned_cols=159  Identities=14%  Similarity=0.276  Sum_probs=115.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--  628 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~--  628 (725)
                      ..+++++.+.++...|++|-..|+|.-+.+.    ....++.+..|...|..+-|+-...++++.+.|+.+..--.+.  
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            3567777777777777777777777777553    2334455567888888888887777888777775442211110  


Q ss_pred             --------------------------------------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885          629 --------------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       629 --------------------------------------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl  670 (725)
                                                            .-..+.++.+|.+.+.+++|.+... ++++|..|..|.+||+
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDI  226 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEec
Confidence                                                  0014567789999999999999866 7779999999999999


Q ss_pred             CCC--eeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          671 NNG--SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       671 ~t~--~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      --.  .....+.+...|..+...+.-..+++++.||.|.+||++..
T Consensus       227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            643  33344445677888887777788999999999999998754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.46  E-value=7.3e-07  Score=90.31  Aligned_cols=95  Identities=15%  Similarity=0.339  Sum_probs=74.5

Q ss_pred             cEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       578 ~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      ..++|+++..+.+..-......|++++-+|. ...+++|+.||.+-+||.++...++..+..|+..++.|-|+|....-|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            4566666543322211112234999999995 567788889999999999998878888999999999999999877778


Q ss_pred             EEEeCCCcEEEEECCC
Q 004885          657 CSCDNNSEIRYWSINN  672 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t  672 (725)
                      ++|++||.+..||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            8999999999999874

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.46  E-value=1.8e-07  Score=62.89  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhhCChHHHHHHHHhcC
Q 004885           10 KMLDVYIYDYLLKRKLHASAKAFQTEG   36 (725)
Q Consensus        10 ~~L~~yiydyl~k~~~~~~A~~f~~e~   36 (725)
                      +.||.+|||||+++|+.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.46  E-value=4.9e-05  Score=94.53  Aligned_cols=159  Identities=14%  Similarity=0.124  Sum_probs=111.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-----------------CCCeEEEEEcC-CCCEEEEEeC
Q 004885          557 KVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSSA  617 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H-----------------~~~V~~IafsP-d~~~Lasgs~  617 (725)
                      .-..|+++++++.|+++.. .+.|+++|..++. +.++.+-                 -...++|+|+| ++..+++...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            4578999998887666654 5689999987754 3333210                 11346899999 4556667777


Q ss_pred             CCeEEEEECCCCCeeeEEEecC---------------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885          618 DRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-  681 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h---------------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-  681 (725)
                      ++.|++||..++.  +..+.+.               -.....|+|+|++..++++-..++.|++||+.++........ 
T Consensus       704 ~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        704 QHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            8999999998765  2333221               123567999999988888888889999999987653221100 


Q ss_pred             ---------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          682 ---------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       682 ---------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                                           -.....|+|+++|..+++-..++.|++||..++.+..
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence                                 0124689999998877777778999999999887653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.45  E-value=1e-05  Score=87.84  Aligned_cols=148  Identities=16%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg-~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      -+|.+.|.-..+..+++-++.|..|| .|-|+|.++++.. .+...-+.|.++..+++|++++++.....|-+.|++++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            36778899999998888999999999 9999999887755 445567889999999999999999999999999999988


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                       ....-....+-|+.++|||+++ ++|-+--+|    .|+++|+.+++..........=.+-+|.||+++|..-+.
T Consensus       435 -v~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         435 -VRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             -eeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence             3333345567899999999988 555544344    699999999888776665555677889999998765543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.9e-06  Score=91.90  Aligned_cols=169  Identities=16%  Similarity=0.177  Sum_probs=124.0

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtI  621 (725)
                      +++....+..|...|.+++|||..+ ++..++.+.+|+|.|+++..++..+..| ..+++++|+-| ..+|+.|...|.|
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV  260 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence            3344557778889999999999777 7889999999999999999988888887 78999999986 4567888889999


Q ss_pred             EEEECCCCCeeeEEEec---------------------------------------------------CCCCeEEEEEcc
Q 004885          622 RVWDTENPDYSLRTFTG---------------------------------------------------HSTTVMSLDFHP  650 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~---------------------------------------------------h~~~V~sl~fsP  650 (725)
                      .|||++.++..+..+.+                                                   ..+.+.++.+++
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99999865421110000                                                   011122222222


Q ss_pred             ----------------------------------------------------------CCCeEEEEEeCCCcEEEEECCC
Q 004885          651 ----------------------------------------------------------SKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       651 ----------------------------------------------------------~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                                                                                +...+++.++..+++.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence                                                                      2244555666667889999999


Q ss_pred             CeeEEEEecCCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCC
Q 004885          673 GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       673 ~~~v~~~~~~~~V~sv~fs-pdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ++.+.++....+|..++.. -++..+++.-.|..++||..++
T Consensus       421 ~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  421 FEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES  462 (463)
T ss_pred             hheeeecccCcceeecceeecCCcchhhheecceEEEEecCC
Confidence            9999999888889888854 3455666777788999997654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.00022  Score=73.99  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC--------CeEEE
Q 004885          558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV  623 (725)
Q Consensus       558 V~~i~fS-pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-----H~~~V~~IafsPd~~~Lasgs~D--------gtIrv  623 (725)
                      ...+++. +++ .|+.+..++ +.++|..+++....+..     .....+++++.|+|++.++....        +.|..
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 565 455555544 56669888765444332     34668899999999987776653        45666


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----EEEE-ec--C-CCeEEEEEecCCC
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF-KC--Q-SGATQMRFQPRLG  695 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----v~~~-~~--~-~~V~sv~fspdg~  695 (725)
                      ++.. +.  +......-.....|+|+|+++.++++-+..+.|..|++.....    ...+ ..  . +..-.++++.+|.
T Consensus       120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence            6766 33  3333333456789999999998888888889999999863221    1222 21  2 2377899999988


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+++....+.|.++|.+ |+.+..+.
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i~  221 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREIE  221 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEEc
Confidence            77777778999999988 88777665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.44  E-value=3.9e-05  Score=83.44  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=119.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeeEEEecCCCCeE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM  644 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-tIrvWDl~~~~~~l~~~~~h~~~V~  644 (725)
                      +|.+++..|. |.+.|.+...+..+.  .+|...|.-..+..+.+-++.|..|| .+-|+|.++++  +..+.+.-+.|.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence            7889999885 678888876665543  35677899999988888899999999 89999999876  677777778999


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCeEEEE
Q 004885          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK  719 (725)
Q Consensus       645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg----~V~IwDl~tg~~v~~  719 (725)
                      ++..+++|+. ++.+.....|.++|++++.....-+. .+-|+.+.|+|++++++-+--+|    .|++||+.+++....
T Consensus       406 av~vs~dGK~-~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         406 AVKVSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEcCCCcE-EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            9999999984 45666678899999999876554443 45699999999999988875554    699999999876643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=5.9e-07  Score=94.03  Aligned_cols=158  Identities=16%  Similarity=0.249  Sum_probs=116.3

Q ss_pred             EEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----Ceee
Q 004885          560 SCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL  633 (725)
Q Consensus       560 ~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~----~~~l  633 (725)
                      .|+|+-+  +-. ++.+.+-.|-+-|++++-.- .|. ..+.|.++.|+-.+.+++.|+..|.|.++|++..    ..+.
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            3466642  223 55566778888898875432 232 4677889999988999999999999999999876    3344


Q ss_pred             EEEecCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCee---EEEEecC---CCeEEEEEecCCCEEEEEEcCCeE
Q 004885          634 RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQ---SGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~---v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      ..+ -|.+.|+++..-. ++.++ .+.+.+|.|++||++--+|   +..++++   ..-.-+.+.+..+.+++++.|...
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceE-eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            444 4888899988766 55544 4666799999999998777   7777642   112234456777889999999999


Q ss_pred             EEEECCCCeEEEEEeC
Q 004885          707 SILDVETQVCRLKLQV  722 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~G  722 (725)
                      +||.++.|..+.+++-
T Consensus       371 RiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPF  386 (425)
T ss_pred             EEEecccCceeeccCC
Confidence            9999999998887753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=7.7e-06  Score=93.85  Aligned_cols=174  Identities=10%  Similarity=0.122  Sum_probs=121.6

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ++++++-|+.+|.|.++.....                    . .+...|+..      ..+|.++++|+.||+|.|-.+
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence            4568999999999998832111                    1 111223222      458999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCe-eeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd-----~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~~h~~~V~sl~fsP~g~~llaS  658 (725)
                      .+.....++. ...++.+|+++|+     .+.+++|+.-| +.++.-+--.. .......-.++|.+++|.-+   +++-
T Consensus       101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAW  175 (846)
T KOG2066|consen  101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAW  175 (846)
T ss_pred             cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEE
Confidence            8877766665 3568999999997     56799998888 76665332111 11134555689999999743   7767


Q ss_pred             EeCCCcEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          659 CDNNSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ++++ .|+|||+.++..+..++..       .-...+.|.++. . ++.|...+|+|..++.
T Consensus       176 and~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~-LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  176 ANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R-LVIGWGDSVKICSIKK  234 (846)
T ss_pred             ecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e-EEEecCCeEEEEEEec
Confidence            7655 4999999998888777641       124667888873 3 3456777899988873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=8.5e-07  Score=92.90  Aligned_cols=136  Identities=17%  Similarity=0.266  Sum_probs=106.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-----~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~  627 (725)
                      .++.|.++.|...+++++.|+..|.|.++|++..     .+...+ -|...|+++..-- ++.+|++.+.+|+|++||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            3567999999988999999999999999999764     334344 4889999998766 78899999999999999998


Q ss_pred             CCCee---eEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeEEEEEec
Q 004885          628 NPDYS---LRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQP  692 (725)
Q Consensus       628 ~~~~~---l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-----~~V~sv~fsp  692 (725)
                      --+ +   +..+.||...-.-+-++  +... ++++++.|-..|||.++.+..+.+++..     ..+.+++|..
T Consensus       330 ~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  330 ATK-CKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             hhh-cccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            765 5   88888886554444333  4444 6667888999999999999999888752     2456666653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.32  E-value=4.9e-05  Score=77.63  Aligned_cols=155  Identities=13%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~--~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      +..+++++|++++++.+....|..|.++..  ..+. .....+..=.+..|+.....+|++..||++.|||++....+..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            789999999999999999999999988652  2333 2223344456788999999999999999999999998663332


Q ss_pred             EE----ecCCCCeEEEEEccCCCe-EEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeEEEEEecCCCEEEEE
Q 004885          635 TF----TGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       635 ~~----~~h~~~V~sl~fsP~g~~-llaSgs~Dg~I~IwDl~t~~~v~~~~~---------~~~V~sv~fspdg~~Lla~  700 (725)
                      ..    ..|.+.+..+.|++.|.. +|+..-.-+.+.+.|++++.-...+..         ...|...+|+.++..+.+.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK  320 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence            22    348899999999986542 444444567899999999865544432         2347777888887776665


Q ss_pred             EcCCeEEEEECCC
Q 004885          701 AIENYISILDVET  713 (725)
Q Consensus       701 s~Dg~V~IwDl~t  713 (725)
                      ..+ .+.-|++.+
T Consensus       321 ~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  321 NEL-QGAEYNILS  332 (344)
T ss_pred             cch-hhheeeccc
Confidence            543 345555543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.31  E-value=2.5e-06  Score=96.44  Aligned_cols=209  Identities=12%  Similarity=0.155  Sum_probs=138.6

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .+.|.+++.++.+-|++...              .++++++.|..|..|+.....                  ..+....
T Consensus       108 f~lhghsraitd~n~~~q~p--------------dVlatcsvdt~vh~wd~rSp~------------------~p~ys~~  155 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHP--------------DVLATCSVDTYVHAWDMRSPH------------------RPFYSTS  155 (1081)
T ss_pred             EEEecCccceeccccCCCCC--------------cceeeccccccceeeeccCCC------------------cceeeee
Confidence            45566666666666666433              478999999999999554331                  1222222


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .-.....-++|+-....+.+.+..+.|+|||++. +.++..+++|...|+.++|.. ....+.+++.|++|+.||.++..
T Consensus       156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            3334467789987555566666788899999976 567888999999999999976 35678899999999999998765


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCC----------CeeEEEEecCC-CeEEEEEe-------
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINN----------GSCAGVFKCQS-GATQMRFQ-------  691 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t----------~~~v~~~~~~~-~V~sv~fs-------  691 (725)
                      ...........+|+.-+|-|-|+-+++--.. +..|.+++.++          ...++.|.++. .|....|-       
T Consensus       236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~  315 (1081)
T KOG0309|consen  236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG  315 (1081)
T ss_pred             cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence            3333344455678888888876643322221 22344443332          35677777643 34444332       


Q ss_pred             -cCC--CEEEEEEcCCeEEEEECCC
Q 004885          692 -PRL--GRILAAAIENYISILDVET  713 (725)
Q Consensus       692 -pdg--~~Lla~s~Dg~V~IwDl~t  713 (725)
                       .|.  -.|++-+.|.++++|-+.+
T Consensus       316 d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  316 DYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCCccceeEEEeecCCceEeeeccH
Confidence             221  2588889999999998764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.31  E-value=2.1e-06  Score=62.42  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=36.1

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd  583 (725)
                      +.+..+++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.30  E-value=7e-06  Score=84.97  Aligned_cols=158  Identities=18%  Similarity=0.287  Sum_probs=111.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccC-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR  622 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H-----~~~V~~IafsPd-~~~Lasgs~DgtIr  622 (725)
                      .+|.-.|.+|.|+.|...++++ .|-.|.+|+++-.   -.+..++.|     ...|++..|+|. ...+.-++..|+|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            5789999999999988888887 4778999998631   223334444     356889999995 45666677799999


Q ss_pred             EEECCCCCeee---------------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-----
Q 004885          623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----  681 (725)
Q Consensus       623 vWDl~~~~~~l---------------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-----  681 (725)
                      +-|++....|.               ..|.+-...|..+.|+++|++++ +-+ --+|+|||++. ..++.++..     
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHH
Confidence            99998433221               11223346789999999998544 444 46899999986 456666632     


Q ss_pred             --------CCCe---EEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          682 --------QSGA---TQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       682 --------~~~V---~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                              ...|   ..+.|+.|...+++|+..+..-||-..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                    1222   457788888899999887777777643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.27  E-value=0.00038  Score=76.08  Aligned_cols=172  Identities=14%  Similarity=0.149  Sum_probs=111.0

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcC
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP  607 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsP  607 (725)
                      .+.+.++..-..+-. + +|||++.|++|..          +..|.|||+.+.+.+..+.--       ......++++|
T Consensus        37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            344444443322222 4 9999998876655          789999999999998877631       22334789999


Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCCeeeEEEe---------------------cCC----------CCeEEE--------
Q 004885          608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFT---------------------GHS----------TTVMSL--------  646 (725)
Q Consensus       608 d~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~---------------------~h~----------~~V~sl--------  646 (725)
                      |+++|++...  +..|.+.|+.+++. +..+.                     +..          ..+...        
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~  193 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE  193 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCcE-EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence            9999998763  68899999987652 11110                     000          001111        


Q ss_pred             ------EEcc-CCCeEEEEEeCCCcEEEEECCCC-----eeEEEEec--------CCCeEEEEEecCCCEEEEEEc----
Q 004885          647 ------DFHP-SKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKC--------QSGATQMRFQPRLGRILAAAI----  702 (725)
Q Consensus       647 ------~fsP-~g~~llaSgs~Dg~I~IwDl~t~-----~~v~~~~~--------~~~V~sv~fspdg~~Lla~s~----  702 (725)
                            .|.+ +|..++++..  |.|++.|+...     ..+..+..        .+++.-++++++++++++...    
T Consensus       194 ~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~  271 (352)
T TIGR02658       194 YLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK  271 (352)
T ss_pred             ccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence                  1233 6665665543  99999996432     22222211        233455999999999888531    


Q ss_pred             ------CCeEEEEECCCCeEEEEEe
Q 004885          703 ------ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       703 ------Dg~V~IwDl~tg~~v~~l~  721 (725)
                            .+.|.++|+++++.+.++.
T Consensus       272 ~thk~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEe
Confidence                  2689999999999999886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.27  E-value=2.5e-06  Score=62.07  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=36.9

Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      ++++.++.+|...|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=4.3e-07  Score=103.98  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=121.8

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV  621 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tI  621 (725)
                      .++..+.++.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+-|.-+.+|..+++.+.-.  -.
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4567778889999999999999999999999999999999999999999999999999999988998877765433  46


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCE
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR  696 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~  696 (725)
                      .+|++.......+.|.    .-.++.|+.....- +.|.....+.|||+.++..+.++-.     ...-..+.|+|+...
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            7999987554566665    34678887653322 2333335688999999877665321     122356678887555


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEE
Q 004885          697 ILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       697 Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ++-   ||  .+||++..+.|+.|
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhh
Confidence            432   33  35666655544443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.20  E-value=0.00032  Score=71.76  Aligned_cols=148  Identities=11%  Similarity=0.054  Sum_probs=96.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~---~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~  641 (725)
                      ++..+++++.|+.|+.+|..+++.+... ....   ...........+..++.+..++.|..+|++++. .+-.+.....
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE-EEEEEESSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc-EEEEeecCCC
Confidence            4556777778889999999999998874 3221   112222233347888999889999999999988 4554444332


Q ss_pred             C----------e-EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          642 T----------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       642 ~----------V-~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .          + ..+.+. ++ .++ .++.++.+..+|+.+++.+.... ...+..+ ...++..|++++.++.|.+||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             -SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence            2          1 222222 33 344 55556654444999999775333 2333332 456678888888999999999


Q ss_pred             CCCCeEEEE
Q 004885          711 VETQVCRLK  719 (725)
Q Consensus       711 l~tg~~v~~  719 (725)
                      +++|+.+-.
T Consensus       229 ~~tG~~~W~  237 (238)
T PF13360_consen  229 LKTGKVVWQ  237 (238)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCCEEeE
Confidence            999998743

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.20  E-value=5.3e-06  Score=93.50  Aligned_cols=158  Identities=15%  Similarity=0.197  Sum_probs=120.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---------------~i~~l~~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      ......|+.|+....+||+|+.||.++|..+.+..               .-.++++|...|..+.|..+...|-|+..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34568999999999999999999999999775421               124578999999999999999999999999


Q ss_pred             CeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE
Q 004885          619 RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR  696 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~  696 (725)
                      |.|.||-+-++..+...+. ...+.|.+++|..+|..+ |..-.||.|.|=.++. ..+.--+. ......+.|++|.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeecc-ceecchhcchheccceeecccHHH
Confidence            9999999988764333332 234678999999999854 5666688887766653 33321111 223567889999888


Q ss_pred             EEEEEcCCeEEEEECCC
Q 004885          697 ILAAAIENYISILDVET  713 (725)
Q Consensus       697 Lla~s~Dg~V~IwDl~t  713 (725)
                      ++.+-..|.+.+||...
T Consensus       171 ~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             HHhhhcCCcEEEecccc
Confidence            88888889999999754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.19  E-value=0.00011  Score=80.86  Aligned_cols=162  Identities=19%  Similarity=0.221  Sum_probs=107.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc---------------EEEEECCCCeEEEEecc-------------------------
Q 004885          556 SKVESCHFSPDGKLLATGGHDKK---------------AVLWCTESFTVKSTLEE-------------------------  595 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~---------------V~IWdl~~~~~i~~l~~-------------------------  595 (725)
                      ..|..+.|||.+++|.+-++...               +.|||+.++..+..+..                         
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            34888999999999988665444               88999877655433211                         


Q ss_pred             -----C---------------CCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          596 -----H---------------TQWITDVRFSPS--LSRLAT-----SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       596 -----H---------------~~~V~~IafsPd--~~~Las-----gs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                           |               ...|....|+|.  +..|+.     .+.++++++|.+.... .+.+-.-....-..+.|
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEeecccEEEE
Confidence                 1               134667778884  334443     3456788888887554 33322212223356889


Q ss_pred             ccCCCeEEEEEeC----------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeE
Q 004885          649 HPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVC  716 (725)
Q Consensus       649 sP~g~~llaSgs~----------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~  716 (725)
                      .+.|++++|-...          ...++|+++....+.......++|..++|.|.+..+++++  .+..+.++|++.. +
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence            9999987764432          2468889988655555544478999999999988776665  4788999999866 4


Q ss_pred             EEE
Q 004885          717 RLK  719 (725)
Q Consensus       717 v~~  719 (725)
                      ++.
T Consensus       310 ~~~  312 (561)
T COG5354         310 RFY  312 (561)
T ss_pred             EEe
Confidence            433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=4.9e-05  Score=86.82  Aligned_cols=180  Identities=16%  Similarity=0.224  Sum_probs=128.2

Q ss_pred             CCceeeeEEEecCCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-
Q 004885          541 KGFTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-  607 (725)
Q Consensus       541 ~~~~~~~~~~l~~H~~~V~~i~fSpd------------g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-  607 (725)
                      +..++..+..++-|...|+.+.|.|-            .-+||++...|.|.+||+..+..+..+..|..+|-+++|-+ 
T Consensus        41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA  120 (1062)
T ss_pred             ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence            45566778888999999999999872            12578888899999999999888888999999999999977 


Q ss_pred             --CC-CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC----CeeEEEEe
Q 004885          608 --SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK  680 (725)
Q Consensus       608 --d~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t----~~~v~~~~  680 (725)
                        +. ..|+......+|.+|+..+++ .+-.+........|+.++|-...-|+.-+..|.|.+.+.-.    ......+.
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q  199 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ  199 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence              33 467777778899999999988 34444444456777888886544455555567776665431    11111111


Q ss_pred             ----cCC-------------------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          681 ----CQS-------------------------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       681 ----~~~-------------------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                          +..                         -...++|+|.-+.++....-..+.|+|++-..|+..+.
T Consensus       200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP  269 (1062)
T ss_pred             EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence                000                         02335778887777888888889999998777766553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.16  E-value=0.00022  Score=75.71  Aligned_cols=157  Identities=12%  Similarity=0.128  Sum_probs=111.8

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------------
Q 004885          561 CHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------------  617 (725)
Q Consensus       561 i~fSpdg~~LaSgs~-----Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----------------  617 (725)
                      -+||+||++|++.-.     .|.|-|||+. +...+..+..|.-.-..|.+.||++.|+++..                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            579999999998643     4799999998 67888899888877888999999988877632                 


Q ss_pred             -CCeEEEEECCCCCeeeEE--E--ecCCCCeEEEEEccCCCeEEEEEeCCCc-------EEEEECCCCeeEEEEec----
Q 004885          618 -DRTVRVWDTENPDYSLRT--F--TGHSTTVMSLDFHPSKEDLLCSCDNNSE-------IRYWSINNGSCAGVFKC----  681 (725)
Q Consensus       618 -DgtIrvWDl~~~~~~l~~--~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~-------I~IwDl~t~~~v~~~~~----  681 (725)
                       +..+.+.|..++. .+..  +  .-|.-.|..+++.++|. +++.+-..|.       |-+++.  +..+..+..    
T Consensus       136 M~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~  211 (305)
T PF07433_consen  136 MQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ  211 (305)
T ss_pred             cCCceEEEecCCCc-eeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH
Confidence             2234555666665 3333  3  23667899999999987 4445443332       333433  333333321    


Q ss_pred             ----CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          682 ----QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       682 ----~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                          ...+-+|+++.++..+++++- .+.+.+||..+++++....
T Consensus       212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence                466999999999888766655 6899999999999887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.14  E-value=2.5e-05  Score=89.19  Aligned_cols=151  Identities=17%  Similarity=0.282  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD  625 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~------------~~Lasgs~DgtIrvWD  625 (725)
                      -.++.|+|.| +||.|+. ..|.|.|..+.+.+..++-|...|+.|.|.|..            -+|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5678899766 6787775 478999999999999999999999999998721            2467777889999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC-CCEEEEE
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAA  700 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd-g~~Lla~  700 (725)
                      ..... .+..+..|..+|-.++|-+.   .++++++-....+|.+|+..+|..+..+.. +....++.++|- .+++.+-
T Consensus        96 ~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   96 FVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             ehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            99877 57778888899999998763   446777777778999999999999988887 444566888874 3567677


Q ss_pred             EcCCeEEEEEC
Q 004885          701 AIENYISILDV  711 (725)
Q Consensus       701 s~Dg~V~IwDl  711 (725)
                      +..|.|.+.+.
T Consensus       175 ~s~g~vl~~~~  185 (1062)
T KOG1912|consen  175 GSKGFVLSCKD  185 (1062)
T ss_pred             ccCceEEEEec
Confidence            77888777765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.14  E-value=0.00066  Score=70.45  Aligned_cols=143  Identities=15%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 004885          555 TSKVESCHFSPDGKLLATGGHD--------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD  625 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~D--------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWD  625 (725)
                      ....+++++.++|++.++....        +.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEe
Confidence            4557899999999987776644        557777776 55443333 356678999999998776 456678899999


Q ss_pred             CCCCCe---eeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCEE
Q 004885          626 TENPDY---SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGRI  697 (725)
Q Consensus       626 l~~~~~---~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~L  697 (725)
                      +.....   ..+.+   ....+..-.++++.+|+ ++++.-..+.|.++|.+ |+.+..+... ..+++++|. ++.+.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            875432   11222   22223478899999987 66676678899999988 8888888764 689999994 666776


Q ss_pred             EEEE
Q 004885          698 LAAA  701 (725)
Q Consensus       698 la~s  701 (725)
                      ++.+
T Consensus       241 ~vTt  244 (246)
T PF08450_consen  241 YVTT  244 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.13  E-value=0.00023  Score=78.77  Aligned_cols=149  Identities=14%  Similarity=0.024  Sum_probs=98.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-------~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      ..++.+..++.|..+|..+++.+........       .+..+.-+|  .+..+++++.++.+..||..+++ .+-... 
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~~-  268 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKRD-  268 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEeec-
Confidence            4677888889999999999887655431100       011111112  35678888899999999999887 333322 


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC-CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS-GATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~-~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      . .....+..  .+..+ +.++.||.|+.+|..+++.+..+.. .. .+.+...  .++.|++++.+|.|++||.++|+.
T Consensus       269 ~-~~~~~p~~--~~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       269 A-SSYQGPAV--DDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             c-CCccCceE--eCCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            1 11222222  34434 4566799999999999988876632 22 2233333  357889999999999999999999


Q ss_pred             EEEEeCCC
Q 004885          717 RLKLQVSH  724 (725)
Q Consensus       717 v~~l~GH~  724 (725)
                      +.+++.+.
T Consensus       343 ~~~~~~~~  350 (377)
T TIGR03300       343 VARLKTDG  350 (377)
T ss_pred             EEEEEcCC
Confidence            98887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.12  E-value=0.00022  Score=87.40  Aligned_cols=154  Identities=16%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          558 VESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      -.+++|-|.|++||+.-.   ...|.+|.-+. -.-..|    ......|..+.|++|+..|+....|. |.+|-..+-.
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            457999999999998865   34666776433 222222    23456899999999999999987666 9999998866


Q ss_pred             eee-EEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----CC--------eeE--------------------
Q 004885          631 YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN----NG--------SCA--------------------  676 (725)
Q Consensus       631 ~~l-~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~----t~--------~~v--------------------  676 (725)
                      .-+ ..+.- ....+..+.|+|.....|.....+|.+.++++.    .+        ..+                    
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP  416 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP  416 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence            222 23321 223455599999877666666655666554432    11        011                    


Q ss_pred             ----EEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          677 ----GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       677 ----~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                          ..+.....|..++|++++..+++...||.|.+|....
T Consensus       417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence                1222356799999999988889999999999998543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=2.2e-05  Score=90.19  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=108.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      .+.++|++++  +++|+-|.++|.|++++... .. .+...|+..      ..+|.+++||+.||+|.|-.+.+... ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            3568899985  78999999999999998753 33 444455544      55799999999999999999988762 33


Q ss_pred             EEecCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECC---CCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885          635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwDl~---t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      .+. ...++.+|+++|+    ....+++|+..| +.++.-+   +...+......+.|.+|+|..+   +++-..|-.|+
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~  182 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK  182 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence            222 3368999999998    223577888777 6666432   2223323334788999999843   55555666699


Q ss_pred             EEECCCCeEEEEEe
Q 004885          708 ILDVETQVCRLKLQ  721 (725)
Q Consensus       708 IwDl~tg~~v~~l~  721 (725)
                      |||+.+++.+..++
T Consensus       183 vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIP  196 (846)
T ss_pred             EEeccccceeeccC
Confidence            99999998887665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=0.00016  Score=81.97  Aligned_cols=203  Identities=11%  Similarity=0.193  Sum_probs=127.9

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .-.++.|+....               |+++|+.||.+++.....+.+-....+    .....++..-.++++|++.|.-
T Consensus        16 kL~c~~WNke~g---------------yIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~v   76 (1189)
T KOG2041|consen   16 KLHCAEWNKESG---------------YIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMV   76 (1189)
T ss_pred             eEEEEEEcccCC---------------eEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEE
Confidence            446677776554               999999999999996544432111111    1112334455688999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEE--------EEECC---
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVR--------VWDTE---  627 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~DgtIr--------vWDl~---  627 (725)
                      +.|+.....|-+...+|.|.||-+-.+.-...  -....+.|.+++|..+|..++..-.||.|.        ||.-+   
T Consensus        77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg  156 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG  156 (1189)
T ss_pred             EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence            99998888999999999999998755432111  122356788888888888776666666553        34211   


Q ss_pred             --------------------CCC----------------eeeE----EEecCCCCeEEEEEc--------cCCCeEEEEE
Q 004885          628 --------------------NPD----------------YSLR----TFTGHSTTVMSLDFH--------PSKEDLLCSC  659 (725)
Q Consensus       628 --------------------~~~----------------~~l~----~~~~h~~~V~sl~fs--------P~g~~llaSg  659 (725)
                                          +++                .|..    .+......|..+.|.        |+.+ .|+.|
T Consensus       157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavc  235 (1189)
T KOG2041|consen  157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVC  235 (1189)
T ss_pred             heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEE
Confidence                                000                0100    111111235555553        3444 56677


Q ss_pred             eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885          660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      -.+|.+.|..-.+......+...-.+..+.|+++|..|++++.|
T Consensus       236 y~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  236 YANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             EcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence            77777777655544333444444668899999999999988763

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.05  E-value=2.4e-05  Score=90.79  Aligned_cols=143  Identities=19%  Similarity=0.254  Sum_probs=112.5

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------D  576 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~---------D  576 (725)
                      .+++.+|...|+|.+-                   +..+++.++++.+|++.|.++..  .|++|++||.         |
T Consensus       187 nr~lf~G~t~G~V~Lr-------------------D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D  245 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLR-------------------DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD  245 (1118)
T ss_pred             CcEEEeecccceEEee-------------------cCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence            3677888888887776                   55667889999999999998887  6899999986         5


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCeeeEEEecCCCCeEEEEEccCC
Q 004885          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD---TENPDYSLRTFTGHSTTVMSLDFHPSK  652 (725)
Q Consensus       577 g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWD---l~~~~~~l~~~~~h~~~V~sl~fsP~g  652 (725)
                      ..|+|||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|.+.+-|   +.++...+..+......+..+++++++
T Consensus       246 ~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  246 PFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG  324 (1118)
T ss_pred             chhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC
Confidence            56899999887666555444443 56788996 56788889999999999   666643455556666779999999998


Q ss_pred             CeEEEEEeCCCcEEEEECC
Q 004885          653 EDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       653 ~~llaSgs~Dg~I~IwDl~  671 (725)
                      . .++.++.+|.|.+|.-+
T Consensus       325 ~-alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  325 D-ALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             c-eEEEecccCcEeeecCC
Confidence            8 78899999999999743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.0011  Score=74.95  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             eEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeE--EE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          558 VESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTV--KS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       558 V~~i~fSp-dg~~LaSg----s~Dg~V----~IWdl~~~~~--i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      ..++.||- +...+.+.    +.+|.+    .+|++...+.  +. +--.....|.|++++|+.+.|+.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            46777876 33444443    334433    3455543321  11 1124678899999999999999999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                      ...+.   ..+....-..+.++|||+|. ++++|+..|.|.+||+.-
T Consensus       288 ~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  288 TTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence            98764   33334445689999999998 777899899999999863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.01  E-value=0.00096  Score=73.79  Aligned_cols=147  Identities=11%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe--
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  643 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V--  643 (725)
                      ++..+++++.|+.|+.+|..+++.+...... ..+.+.... .+..++.++.++.|..||.++++ .+-.+......+  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceee
Confidence            4677888889999999999999988766532 222211111 35577788889999999999887 333333221111  


Q ss_pred             ---EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-EEEEEecCCCEEEEEEcCCeEEE
Q 004885          644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       644 ---~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-----------V-~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                         .+..+. + . .++.+..++.|..+|+++|+.+........           + .+..+  .++.+++++.++.++.
T Consensus       181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA  255 (377)
T ss_pred             cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence               111122 2 3 455677789999999999987765432110           0 11112  2356777777888888


Q ss_pred             EECCCCeEEEEE
Q 004885          709 LDVETQVCRLKL  720 (725)
Q Consensus       709 wDl~tg~~v~~l  720 (725)
                      ||+++|+.+-..
T Consensus       256 ~d~~tG~~~W~~  267 (377)
T TIGR03300       256 LDLRSGRVLWKR  267 (377)
T ss_pred             EECCCCcEEEee
Confidence            888888766544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00037  Score=80.96  Aligned_cols=195  Identities=11%  Similarity=0.121  Sum_probs=127.1

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC-----cEEE
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK-----KAVL  581 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-V~~i~fSpdg~~LaSgs~Dg-----~V~I  581 (725)
                      .++.|+.||.|..+                    ...+..+..+.++... |..+....+..+|++.++|+     .|+|
T Consensus        37 ~vvigt~~G~V~~L--------------------n~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llki   96 (933)
T KOG2114|consen   37 SVVIGTADGRVVIL--------------------NSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKI   96 (933)
T ss_pred             eEEEeeccccEEEe--------------------cccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEE
Confidence            78889999998877                    2233444556666666 44444443446888887776     4899


Q ss_pred             EECCCC------eEE---EEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeeEEEecCCCCeEE
Q 004885          582 WCTESF------TVK---STLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMS  645 (725)
Q Consensus       582 Wdl~~~------~~i---~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~---~~~~~l~~~~~h~~~V~s  645 (725)
                      |+++..      .++   +.+.    ....++.+++.+.+-..+++|-.||.|.++.-+   ...........-.++|+.
T Consensus        97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen   97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            998632      233   1121    124678899999998889999999999988432   222122333344578999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe-C
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-V  722 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~-G  722 (725)
                      +.|..++..+++++. -..|.+|.+....+ ...+.. +..+.|..|++....++++ .+..|.+||......-..|. |
T Consensus       177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g  254 (933)
T KOG2114|consen  177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVG  254 (933)
T ss_pred             eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCC
Confidence            999999886443443 35799999985442 333443 5567788887764435544 45679999988766666666 6


Q ss_pred             CC
Q 004885          723 SH  724 (725)
Q Consensus       723 H~  724 (725)
                      |.
T Consensus       255 ~k  256 (933)
T KOG2114|consen  255 EK  256 (933)
T ss_pred             Ce
Confidence            53

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.00  E-value=0.0012  Score=70.16  Aligned_cols=161  Identities=12%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeEEEE--e--ccCCCCeE
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG------------------HDKKAVLWCTESFTVKST--L--EEHTQWIT  601 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs------------------~Dg~V~IWdl~~~~~i~~--l--~~H~~~V~  601 (725)
                      .+..+..+..|.-.-..+.+.|||+.|+++-                  .+..+.+.|..+++.+..  +  ..|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            4566777777777778899999998777651                  123455567777777665  4  34778899


Q ss_pred             EEEEcCCCCEEEEEeCCC-------eEEEEECCCCCeeeEEE-------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          602 DVRFSPSLSRLATSSADR-------TVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       602 ~IafsPd~~~Lasgs~Dg-------tIrvWDl~~~~~~l~~~-------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                      .+++.+++..++.+-+.+       .|-+|+....   +..+       ......|-+|++++++..+.+|+-..+++.+
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            999999988777765543       2444444332   2222       2234679999999999988889999999999


Q ss_pred             EECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       668 wDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      ||..++.++..... ..+..++..+++  +++++..|.+...+
T Consensus       244 ~d~~tg~~~~~~~l-~D~cGva~~~~~--f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  244 WDAATGRLLGSVPL-PDACGVAPTDDG--FLVSSGQGQLIRLS  283 (305)
T ss_pred             EECCCCCEeecccc-CceeeeeecCCc--eEEeCCCccEEEcc
Confidence            99999999887764 446667666664  44444455544433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.98  E-value=2.8e-06  Score=97.53  Aligned_cols=192  Identities=17%  Similarity=0.167  Sum_probs=129.8

Q ss_pred             cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004885          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (725)
Q Consensus       496 a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~  575 (725)
                      .+.+..+....++++.|+..|.|++|.+..+                   ........|...|+-+.-+.||..+++.+.
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-------------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCc-------------------cccccccccccccccccccCCcceeeeecc
Confidence            3445555667789999999999999955444                   233455689999999999999997766544


Q ss_pred             CC--cEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEEc
Q 004885          576 DK--KAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFH  649 (725)
Q Consensus       576 Dg--~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~fs  649 (725)
                      -.  ..-+|++.+ +...+.|.+    ..++.|+.....-+.|+....+.|||+.+...+...+.+   ....-.++.|+
T Consensus      1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence            33  467999865 445555543    457788765333344444456889999998743333332   22234778899


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |+...+|    +||  .+||++..+.++.|..-..-..=.|+|.|..++.-+     .|||++|.+.+++.+
T Consensus      1240 P~D~LIl----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1240 PCDTLIL----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             CCcceEe----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence            9977333    255  379999988888876422222234899998887754     499999987666543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.98  E-value=0.00025  Score=79.83  Aligned_cols=76  Identities=20%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      .....|.|++++|+...|+.|+.||+|.+||...+...  +..+.-.++.++|||+|..|++|+.-|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            56778999999999999999999999999998765433  33345678899999999999999999999999986543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.95  E-value=0.00066  Score=74.87  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 004885          559 ESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD  625 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs-----------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~DgtIrvWD  625 (725)
                      ..+.|.+.|++|++--           ....++|+++... .+....+-.++|.+++|.|.++.+++++  .+-.+.++|
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence            4577888888665321           1246788888643 3333335688999999999988877665  578899999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEc
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ++..   ++.+ .....=..+.|+|.++++|++|-  .-|.|-|||......+. .+.+ ....-+.|+||+.++.+...
T Consensus       305 lr~N---l~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         305 LRGN---LRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             cccc---eEEe-cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCC
Confidence            9865   2222 22334466889999998876543  34679999988654444 5543 45666789999998877643


Q ss_pred             ------CCeEEEEECCCC
Q 004885          703 ------ENYISILDVETQ  714 (725)
Q Consensus       703 ------Dg~V~IwDl~tg  714 (725)
                            |+.|+|||+...
T Consensus       380 s~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         380 SEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CcccccCcceEEEEecCc
Confidence                  789999998643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.92  E-value=0.0003  Score=80.96  Aligned_cols=150  Identities=11%  Similarity=0.067  Sum_probs=105.6

Q ss_pred             EEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------------------
Q 004885          562 HFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------------------  617 (725)
Q Consensus       562 ~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----------------------  617 (725)
                      -+++||+.+. +.-+.+.|.+.|.++.+....+.- ......++++|+++++++.+.                       
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3456776553 333456777888887766665543 224456677888877776651                       


Q ss_pred             -----------------CCeEEEEECCC----CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--
Q 004885          618 -----------------DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--  674 (725)
Q Consensus       618 -----------------DgtIrvWDl~~----~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--  674 (725)
                                       +++|.+.|..+    .. .+..+..-....+.|+++|||+++++++..+.+|.|+|+.+.+  
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence                             24577788776    22 2333333445678999999999999999999999999998754  


Q ss_pred             ----------eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          675 ----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       675 ----------~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                                .+...+...+....+|+++|..+.+.--|..|..||+.+
T Consensus       357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                      244444456677889999987666667799999999987

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.91  E-value=0.00053  Score=70.15  Aligned_cols=144  Identities=11%  Similarity=0.011  Sum_probs=95.7

Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC
Q 004885          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (725)
Q Consensus       575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia--fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g  652 (725)
                      .+++|..||..+++.+....- ...+....  ..+++.++++++.++.|..||..+++ .+-.+.. ...+...... .+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~-~~~~~~~~~~-~~   76 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK-VLWRFDL-PGPISGAPVV-DG   76 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSE-EEEEEEC-SSCGGSGEEE-ET
T ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC-EEEEeec-cccccceeee-cc
Confidence            368999999999999887753 11122222  23356788888999999999999987 4444443 2221111122 23


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEE-ecC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQ----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~~----~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ..++ .+..++.|+.+|..+|+.+..+ ...    .....+....++..++++..++.|..+|+++|+.+-.+..+
T Consensus        77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence            3344 4456789999999999999884 322    11223333334678888888999999999999998887653

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.91  E-value=0.0009  Score=82.18  Aligned_cols=152  Identities=16%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEE
Q 004885          554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW  624 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~---D---g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvW  624 (725)
                      +.+.-..|+|-.||.++|+.+.   +   ..|+||+-+ |....+.+.-.+--.+++|.|.|.+||+.-.   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4556778999999999998764   2   478999965 6655555544455568899999999998864   2344455


Q ss_pred             ECCCCCeeeEEE----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeEEEEEecCCC-
Q 004885          625 DTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLG-  695 (725)
Q Consensus       625 Dl~~~~~~l~~~----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~-  695 (725)
                      .- ++- .-..|    ......|..+.|++++. +||..-.| .|.+|-..+.....+.+    ....+..+.|+|... 
T Consensus       287 Er-NGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  287 ER-NGL-RHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             ec-CCc-EeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            43 222 11222    23456799999999988 66665544 49999998876543332    234456699999755 


Q ss_pred             EEEEEEcCCeEEEEE
Q 004885          696 RILAAAIENYISILD  710 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwD  710 (725)
                      .|.+.+.++.+.+++
T Consensus       363 ~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  363 RLHVLTSNGQYEIYD  377 (928)
T ss_pred             EEEEEecCCcEEEEE
Confidence            355555556665544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00034  Score=75.96  Aligned_cols=151  Identities=16%  Similarity=0.187  Sum_probs=111.2

Q ss_pred             EEEEE-eCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe----------
Q 004885          569 LLATG-GHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----PDY----------  631 (725)
Q Consensus       569 ~LaSg-s~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~----~~~----------  631 (725)
                      .|+++ -.++.+.|+|-....  ....-.-|..+|.++.+.+-++.+++....|.|..|....    +..          
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            34433 456889999976533  2333356899999999999999999999999999999873    110          


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------------------------
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------------------------  681 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------------------------------  681 (725)
                      -+..+........++.|+|++. .+.+-+.|..|+++++++++.+..+..                              
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverel  271 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVEREL  271 (558)
T ss_pred             hhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhH
Confidence            1122333456789999999988 556777899999999999876654431                              


Q ss_pred             ----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          682 ----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       682 ----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                          ...-+.++|+..+.+|+.++-=| |+|+++.++++++.+-
T Consensus       272 ek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  272 EKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                11235678888888888887655 9999999999998774

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.0057  Score=68.27  Aligned_cols=177  Identities=15%  Similarity=0.100  Sum_probs=104.6

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------CCCCeEEEEEcC-----CC-
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL-  609 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l--~~------H~~~V~~IafsP-----d~-  609 (725)
                      .+.+...++...+.|++++.| |=-++|+|..+|.+.|.|++....+..-  ..      ....|+++.|..     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            467777888889999999998 5669999999999999999988877652  22      234688888863     22 


Q ss_pred             --CEEEEEeCCCeEEEEECCC---CCeee---EEEecCCCCeEEEE-EccC--------------------CCeEEEEEe
Q 004885          610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD  660 (725)
Q Consensus       610 --~~Lasgs~DgtIrvWDl~~---~~~~l---~~~~~h~~~V~sl~-fsP~--------------------g~~llaSgs  660 (725)
                        -.+++|...|.+.+|.+.-   +.+.+   .....+.+.|..|. |+.+                    -+.+++.++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              3688999999999998751   11111   12224556666665 3221                    022444554


Q ss_pred             CCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          661 NNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-----pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                       +..|||+...+.+..+..... ..+..+++-     ..+..|++-..+|.|++|.+-.-+.+..+.-
T Consensus       234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence             678999999988776655521 223444553     2344566667899999999998888877654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.00084  Score=74.66  Aligned_cols=152  Identities=11%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEE
Q 004885          559 ESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWD  625 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWD  625 (725)
                      ..+.|-.+|.+|+.--.          -..+-|+.++....-.....-...|...+|.|.|+.+++.+.   ..++.+|.
T Consensus       397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~  476 (698)
T KOG2314|consen  397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA  476 (698)
T ss_pred             cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence            34566667777764211          112344444432221112234678899999999998877654   35788998


Q ss_pred             CCC-CCe--eeEEEecCCCCeEEEEEccCCCeEEEEE--eCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEE
Q 004885          626 TEN-PDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       626 l~~-~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSg--s~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla  699 (725)
                      +++ ...  .+..+.  ....+.|-|+|.|..+++.+  +..|.+.++|+....+..+-.. +...+.+.|+|.|+|+++
T Consensus       477 ~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT  554 (698)
T KOG2314|consen  477 VETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT  554 (698)
T ss_pred             eecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence            873 221  122232  24578899999999665544  3478899999986444333222 567889999999999999


Q ss_pred             EEc------CCeEEEEECC
Q 004885          700 AAI------ENYISILDVE  712 (725)
Q Consensus       700 ~s~------Dg~V~IwDl~  712 (725)
                      +++      |..-+||++.
T Consensus       555 ~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  555 SSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             eeehhhhccccceEEEEee
Confidence            876      3445555543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00053  Score=76.21  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDT  626 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-----------DgtIrvWDl  626 (725)
                      -+-+.|||.|.||+|--.-| |.+|--.+...+..|. |. .|.-+.|+|+.+||+|=+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35689999999999986554 8899877666665554 54 4889999999999998653           247999999


Q ss_pred             CCCCeeeEEEecCC---CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          627 ENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       627 ~~~~~~l~~~~~h~---~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      .++. ..+.|....   ..-.-+.|+.|+++ + ++.....|.||+.....++..-.. -.+|....|+|.+..|+.=..
T Consensus       290 ~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy-~-Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  290 ATGL-LKRSFPVIKSPYLKWPIFRWSHDDKY-F-ARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             cccc-hhcceeccCCCccccceEEeccCCce-e-EEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            9987 566665422   22345789999873 3 344446799999876443322111 467888999998666554333


Q ss_pred             C-----CeEEEEECCCCeEEEE
Q 004885          703 E-----NYISILDVETQVCRLK  719 (725)
Q Consensus       703 D-----g~V~IwDl~tg~~v~~  719 (725)
                      +     ..+.+..+-+++.+++
T Consensus       367 e~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             cccCCcceEEEEecCccceeee
Confidence            1     4566776666655544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.00071  Score=76.12  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=107.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCe--EEE
Q 004885          551 IPASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT--VRV  623 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~LaSgs---~D-g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dgt--Irv  623 (725)
                      +..-...+..-+|+|++..++..+   .. ..++++|+++++....+. ..+.-...+|+||+++|+-+ ..|+.  |.+
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            334455678889999998766542   22 358999998876554443 23344566899999887654 45665  555


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      .|+....  +..+..-.+.-+.-.|+|+|++++++.+..|.  |.++|++.+...+.......-..-.|+|||.+|+..+
T Consensus       267 ~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         267 MDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            5776655  33344333444577899999999988887776  6666777665533333333333778999999998887


Q ss_pred             cC-Ce--EEEEECCCCe
Q 004885          702 IE-NY--ISILDVETQV  715 (725)
Q Consensus       702 ~D-g~--V~IwDl~tg~  715 (725)
                      .. |.  |.++|+.++.
T Consensus       345 ~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         345 SSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCceeeEEeccCCCC
Confidence            53 43  7778877665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.65  E-value=0.0043  Score=64.51  Aligned_cols=172  Identities=11%  Similarity=0.118  Sum_probs=108.1

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .-..++|+||++               +++.....|+|++|+.....--......      ..       .-.-...|..
T Consensus        45 QWRkl~WSpD~t---------------lLa~a~S~G~i~vfdl~g~~lf~I~p~~------~~-------~~d~~~Aiag   96 (282)
T PF15492_consen   45 QWRKLAWSPDCT---------------LLAYAESTGTIRVFDLMGSELFVIPPAM------SF-------PGDLSDAIAG   96 (282)
T ss_pred             hheEEEECCCCc---------------EEEEEcCCCeEEEEecccceeEEcCccc------cc-------CCccccceee
Confidence            567889999998               8888888899999955432100000000      00       0012344666


Q ss_pred             EEEcCCC------CEEEEEeCCCcEEEEECCC-----CeEEEEec---cCCCCeEEEEEcCCCCEEEEEeC----CC---
Q 004885          561 CHFSPDG------KLLATGGHDKKAVLWCTES-----FTVKSTLE---EHTQWITDVRFSPSLSRLATSSA----DR---  619 (725)
Q Consensus       561 i~fSpdg------~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~---~H~~~V~~IafsPd~~~Lasgs~----Dg---  619 (725)
                      +.|..-.      ..|++-.++|.++-|-+..     ....+++.   .+...|+++.|+|..++|++|+.    |+   
T Consensus        97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~  176 (282)
T PF15492_consen   97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK  176 (282)
T ss_pred             eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc
Confidence            6664311      1466667888887776532     23333332   24678999999999998887764    11   


Q ss_pred             ----eEEEEECCCCCe-------------------------eeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          620 ----TVRVWDTENPDY-------------------------SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       620 ----tIrvWDl~~~~~-------------------------~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                          -+..|.+-++..                         .+..+   ......|..|..+|+|. +||+...+|.|.+
T Consensus       177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsL  255 (282)
T PF15492_consen  177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSL  255 (282)
T ss_pred             ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEE
Confidence                356676533220                         00011   11346799999999998 7888999999999


Q ss_pred             EECCCCeeEEEEec
Q 004885          668 WSINNGSCAGVFKC  681 (725)
Q Consensus       668 wDl~t~~~v~~~~~  681 (725)
                      |++.+-++...++.
T Consensus       256 W~iPsL~~~~~W~~  269 (282)
T PF15492_consen  256 WEIPSLRLQRSWKQ  269 (282)
T ss_pred             EecCcchhhcccch
Confidence            99998877777654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.54  E-value=2.2e-05  Score=88.14  Aligned_cols=186  Identities=16%  Similarity=0.231  Sum_probs=122.2

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL  581 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs----~Dg~V~I  581 (725)
                      .+++.|..+|.|.+....+..+.                 ......+|....+|++|++ |.++||+|-    .|..+.|
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            47888999999998865554322                 1223457788899999998 667777773    3568999


Q ss_pred             EECCCC--eEE--EEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885          582 WCTESF--TVK--STLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       582 Wdl~~~--~~i--~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      ||+.+.  .+.  ..|. +......+++|..+.+.+++|...+.++++|++........+  .+..|..+..+|-...++
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCce
Confidence            999765  111  1122 133456688888888899999999999999998432111111  123456677788444467


Q ss_pred             EEEeCCCcEEEEE-CCCC-eeEEEEec-----CCCeEEEEEecCCCE-EEEEEc-CCeEEEEECC
Q 004885          657 CSCDNNSEIRYWS-INNG-SCAGVFKC-----QSGATQMRFQPRLGR-ILAAAI-ENYISILDVE  712 (725)
Q Consensus       657 aSgs~Dg~I~IwD-l~t~-~~v~~~~~-----~~~V~sv~fspdg~~-Lla~s~-Dg~V~IwDl~  712 (725)
                      |+-. ||.|.+|| .++- .++..+.+     ...+..++|+|...- +++... .++|+.||+.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6655 99999999 4332 22222222     234899999997543 444444 4889999875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.00066  Score=78.45  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~  627 (725)
                      +++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++|..++|+..-|.|.+|.++
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            6779999988889999889999999988877766777899999999999999999999999999999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.038  Score=61.53  Aligned_cols=163  Identities=17%  Similarity=0.194  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCee
Q 004885          557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~  632 (725)
                      .-..++|+++++.+.++..   +++|.+.|..+.+.+.+...-..+ ..++++|++..++++. .+++|.+.|..... .
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v  194 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-V  194 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-e
Confidence            4678999999987776655   689999998888877765433334 8999999999777765 68899999977654 2


Q ss_pred             eEE----EecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEE-EecCC-CeEEEEEecCCCEEEEEEc-C
Q 004885          633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKCQS-GATQMRFQPRLGRILAAAI-E  703 (725)
Q Consensus       633 l~~----~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~-~~~~~-~V~sv~fspdg~~Lla~s~-D  703 (725)
                      .+.    ...-...-..+.++|+|.+++++...+  +.|.+.|..++..... +.... ....+.++|+|..+.+... .
T Consensus       195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence            220    011123346789999999888777765  6899999998877765 22222 5678899999998888855 4


Q ss_pred             CeEEEEECCCCeEEEEEe
Q 004885          704 NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       704 g~V~IwDl~tg~~v~~l~  721 (725)
                      +.|.+.|..+...+..+.
T Consensus       275 ~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         275 GTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CeEEEEeCCCCceeeeec
Confidence            899999999987777654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.45  E-value=0.055  Score=56.57  Aligned_cols=152  Identities=12%  Similarity=0.233  Sum_probs=91.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------~i~~l-----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      +..-.|++..++.++++.-.++.+.++++....      ....+     ..+...+..++|+|....|+++....-.+||
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY  144 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence            457788998778777776678999999884311      11111     1345678999999987777777766666666


Q ss_pred             ECCC--CCeeeE--EEe------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------C
Q 004885          625 DTEN--PDYSLR--TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------G  684 (725)
Q Consensus       625 Dl~~--~~~~l~--~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~  684 (725)
                      .+..  ....+.  ...      .....+.++.|+|....+++..+.+..|.++| .+|+.+..+....          .
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q  223 (248)
T PF06977_consen  145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ  223 (248)
T ss_dssp             EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---S
T ss_pred             EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC
Confidence            6653  211111  111      13355899999999888999999899999999 6688877776422          3


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          685 ATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      ...|+|.++| .|+.++.-+..++|
T Consensus       224 pEGIa~d~~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  224 PEGIAFDPDG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEEE-TT---EEEEETTTEEEEE
T ss_pred             ccEEEECCCC-CEEEEcCCceEEEe
Confidence            7889999986 56666777766665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.43  E-value=0.031  Score=58.36  Aligned_cols=171  Identities=12%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      .+.+.+-...|..|+|+|+.+ ++++....+.|..++. +++.++.+.-. .+....|++.-++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            455666667799999999755 6667777888888886 46777766433 35688999988887777776789999998


Q ss_pred             CCCCCe--ee---EEEe-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---CeeEEEEe---------cCC
Q 004885          626 TENPDY--SL---RTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS  683 (725)
Q Consensus       626 l~~~~~--~l---~~~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---~~~v~~~~---------~~~  683 (725)
                      +.....  ..   ..+.     .+...+..|+|+|.+..++++.- ..-..||.++.   ...+....         ...
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence            843221  11   1111     24456899999999887886654 44455655543   22222111         134


Q ss_pred             CeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       684 ~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+.++.++|..+.|++-+. ...|.++| .+|+++..+.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            5789999998777666655 67899999 6677666553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.0062  Score=72.67  Aligned_cols=143  Identities=12%  Similarity=0.104  Sum_probs=97.9

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       566 dg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~-V~~IafsP-----d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      +.++|+.- .....|+-.|++.|+.+..+..|... |.+++-..     ...-.++|-.+..+..||.+-....+.....
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44444443 45678999999999999999887654 55443221     1334677778889999999865422222111


Q ss_pred             ----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          639 ----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       639 ----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                          ......|++-..+|  .||.|+.+|.||+||--..+....+.+ +.+|..|+.+.||++|+++ ++..|.++|.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT-CKTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe-ecceEEEEEE
Confidence                23446777777676  478899999999999543333344444 7899999999999887665 4567777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00035  Score=75.07  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             EEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEE
Q 004885          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (725)
Q Consensus       579 V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~lla  657 (725)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..+ ..+++++|+-+..+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            77777666666667788899999999999766 78888999999999999877 67788777 78999999999998999


Q ss_pred             EEeCCCcEEEEECCC
Q 004885          658 SCDNNSEIRYWSINN  672 (725)
Q Consensus       658 Sgs~Dg~I~IwDl~t  672 (725)
                      +|..+|.|.|||++.
T Consensus       253 aGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQ  267 (463)
T ss_pred             EeccCceEEEEEccC
Confidence            999999999999985

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.41  E-value=0.016  Score=70.12  Aligned_cols=156  Identities=17%  Similarity=0.247  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccC---------------
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEH---------------  596 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----~-------------------~~~i~~l~~H---------------  596 (725)
                      .+.|.+++||||+.+++..+.+.+|.+.+-.    .                   |+....|.+.               
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            4569999999999999988888888776431    0                   1111122211               


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEe----CC-CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE---eCC
Q 004885          597 ------TQWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNN  662 (725)
Q Consensus       597 ------~~~V~~IafsPd~~~Lasgs----~D-gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg---s~D  662 (725)
                            ...=+.|.|.-||.++++..    .+ +.|+|||-+ +. .-.+-....+--.+++|-|.|. ++++-   ..|
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd  265 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSD  265 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCC-eEeeeeecCCC
Confidence                  11123589999999998843    24 799999987 32 1111112223457799999887 44443   245


Q ss_pred             CcEEEEECCCCeeEEEE----ec-CCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCC
Q 004885          663 SEIRYWSINNGSCAGVF----KC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ  714 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~----~~-~~~V~sv~fspdg~~Lla~s~---Dg~V~IwDl~tg  714 (725)
                      +.|.+|.-+ |-....|    .. ...|..++|+.++..|++..+   ...|.+|-+.+.
T Consensus       266 ~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  266 SDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            678888643 4333333    22 234999999999877776333   344999988775

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.34  E-value=0.015  Score=64.95  Aligned_cols=146  Identities=11%  Similarity=0.034  Sum_probs=93.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-------~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      ..++.++.++.|..+|..+++.+........       ....+..+|  .+..++.++.++.+..+|+.+++. +-... 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~-  283 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE-  283 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec-
Confidence            3566677889999999988887665431110       111122233  356777888899999999998873 22211 


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                       ......+..  .+..++ .++.+|.|..+|..+++.+.....  .....+..+.  +++|++++.||.|.++|..+|+.
T Consensus       284 -~~~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        284 -YGSVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             -CCCccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCCCE
Confidence             111222222  234344 566789999999999987765432  1222333332  46888999999999999999998


Q ss_pred             EEEEe
Q 004885          717 RLKLQ  721 (725)
Q Consensus       717 v~~l~  721 (725)
                      +.+++
T Consensus       358 ~~~~~  362 (394)
T PRK11138        358 VAQQK  362 (394)
T ss_pred             EEEEE
Confidence            87765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.024  Score=63.08  Aligned_cols=159  Identities=15%  Similarity=0.182  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeee
Q 004885          558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  633 (725)
Q Consensus       558 V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWDl~~~~~~l  633 (725)
                      -.++++++.++.+ ++...+..|.+.|..+.+.+....- ......++++|++..++++..   ++++.+.|..+... +
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-T  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-E
Confidence            4578888888854 4444568999999877666655432 226678999999988877765   68888888888773 4


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-----EEecCCCeEEEEEecCCCEEEEEEcC---Ce
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY  705 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-----~~~~~~~V~sv~fspdg~~Lla~s~D---g~  705 (725)
                      .....-..+ ..++++|+|..++++-..++.|.++|.......+     ..........+.++|+|.++.+....   +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            433322233 8899999999888777788999999987766553     12224556788999999977766553   59


Q ss_pred             EEEEECCCCeEEEE
Q 004885          706 ISILDVETQVCRLK  719 (725)
Q Consensus       706 V~IwDl~tg~~v~~  719 (725)
                      |.+.|..++.....
T Consensus       233 v~~id~~~~~v~~~  246 (381)
T COG3391         233 VLKIDTATGNVTAT  246 (381)
T ss_pred             EEEEeCCCceEEEe
Confidence            99999998866654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0012  Score=74.76  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ...|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++. .+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~-~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG-RL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC-ce
Confidence            3458889999999999999999999999987 778888887777777 99999999999999999999999999988 34


Q ss_pred             EE-EecCCCCeEEEEEcc
Q 004885          634 RT-FTGHSTTVMSLDFHP  650 (725)
Q Consensus       634 ~~-~~~h~~~V~sl~fsP  650 (725)
                      .. ...-...|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            43 223345677777764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.25  E-value=0.029  Score=60.76  Aligned_cols=159  Identities=13%  Similarity=0.173  Sum_probs=94.1

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      .++.+... ...++|++|+-- ++. |+++. .+.|++|++...+ ....- ......|+++...  +++|++|+..+.|
T Consensus        78 ~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv  151 (321)
T PF03178_consen   78 KLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV  151 (321)
T ss_dssp             EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence            44444333 346789998876 444 44443 5789999998766 33322 2123356666655  5699999988888


Q ss_pred             EEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------Ce----eEEEEecCCCeEEE
Q 004885          622 RVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GS----CAGVFKCQSGATQM  688 (725)
Q Consensus       622 rvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------~~----~v~~~~~~~~V~sv  688 (725)
                      .++..+.....+..+  ......+++++|-++++ .++.++.+|.|.++....       +.    .+..+.....|+++
T Consensus       152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~  230 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF  230 (321)
T ss_dssp             EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred             EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence            877554432223322  22345689999987775 777899999999988762       22    23344446778888


Q ss_pred             ---EEecC--CC------EEEEEEcCCeEEEE
Q 004885          689 ---RFQPR--LG------RILAAAIENYISIL  709 (725)
Q Consensus       689 ---~fspd--g~------~Lla~s~Dg~V~Iw  709 (725)
                         ++.|.  +.      .++.++.+|.|.+.
T Consensus       231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence               44452  22      37788889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.25  E-value=0.042  Score=56.59  Aligned_cols=147  Identities=10%  Similarity=0.022  Sum_probs=89.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~  644 (725)
                      -|++++.|++.|.+++.+++++..+..+.... .|. .....+++..+..++.|++....|.++.. ++...+.-.+.-.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~  139 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFV  139 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceec
Confidence            47789999999999999999998777665322 222 23356688999999999999999999877 6666554444445


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEEecCCCeEE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (725)
Q Consensus       645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~~~~~~V~s--v~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~  719 (725)
                      +-+..|-...++++. ..|.|.-...+.+.  .+..+...+++.+  ++..   .++..+.-||.+.-|| +.|+.+.+
T Consensus       140 sP~i~~g~~sly~a~-t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~---~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAI-TAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG---SSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             cceecCCCceEEEEe-ccceEEEEccCCCCcceehhhhcCCccccCceecc---ceEEEEEeccEEEEEc-CCCcEEEe
Confidence            556666333355433 34555545555442  2222222333322  2222   3445555566666665 44544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.002  Score=74.64  Aligned_cols=109  Identities=15%  Similarity=0.250  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      +-+.|+|...+||+++.    .|+|.||- ++|++-+... ..-.+++++|||..-.|+.|-.-|.+.+|...+.+ .-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-eee
Confidence            45689999999988864    57888884 4555433222 12335679999998888999889999999998776 345


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      ....|..+|..+.|+++|. .+++++.-|.|.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            5567999999999999998 66699999999999765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.23  E-value=0.0066  Score=68.70  Aligned_cols=142  Identities=13%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW-Dl~~~~~~  632 (725)
                      .......+.++|+|+++++++ ||...|+.....+....     +.-..++|.+. ..+|+-....+|.|+ ++.+..  
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~--  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV--  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--
Confidence            344578999999999999865 78888888555444322     33456789884 457777778899996 443322  


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ...+... ..+..|-.   |. +|+..+ ++.|.+||+.+++.++.+... +|..|.|++++.+++..+.+ .|.|++..
T Consensus       102 ~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  102 VKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             T-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             ceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            1222211 22444433   66 454444 448999999999999999864 38999999998888877654 56666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.22  E-value=0.019  Score=69.59  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004885          558 VESCHFSPDGKLLATGG----HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENP  629 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs----~D-g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~  629 (725)
                      =+.|+|--||.++|+..    .+ ++|+|||.+ +..-.+-+...+.=.+++|-|.|..+++..   .|..|.+|.-+.-
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            35699999999999832    24 799999976 433322222334446899999999988764   3567888865422


Q ss_pred             Ce--eeEEEecCCCCeEEEEEccCCCeEEEE---EeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE-EEEEEc
Q 004885          630 DY--SLRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAI  702 (725)
Q Consensus       630 ~~--~l~~~~~h~~~V~sl~fsP~g~~llaS---gs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~-Lla~s~  702 (725)
                      ..  ....+......|..++|+.++. +|+.   +.....|++|-+.+......-.. -....-+.|+|.-.+ |.+-..
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~  355 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRE  355 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCceeEEEEec
Confidence            10  1112222334499999999987 5555   33444599999987654332221 011111667775332 222224


Q ss_pred             CCeEEEEE
Q 004885          703 ENYISILD  710 (725)
Q Consensus       703 Dg~V~IwD  710 (725)
                      +|.+.++|
T Consensus       356 sG~~~v~~  363 (1265)
T KOG1920|consen  356 SGQRLVRD  363 (1265)
T ss_pred             CCcEEEEE
Confidence            45444444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.016  Score=67.95  Aligned_cols=155  Identities=16%  Similarity=0.217  Sum_probs=102.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCC-----eEEEEECCCC-
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADR-----TVRVWDTENP-  629 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd-~~~Lasgs~Dg-----tIrvWDl~~~-  629 (725)
                      .|+|  |++.+..++.|+.||.|.+.+- ....++.|..+...|...-|.-+ ..+|++.+.|+     .|+|||++.. 
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4544  4567889999999999999873 34555677777766333334444 46777776654     5999998743 


Q ss_pred             ----Ceee---EEEe----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---C-Ce-eEEEEecCCCeEEEEEecC
Q 004885          630 ----DYSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-GS-CAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       630 ----~~~l---~~~~----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~---t-~~-~v~~~~~~~~V~sv~fspd  693 (725)
                          ..++   +.+.    ....++.+++.+.+-. .+|.|-.+|.|.++.-+   . +. .........+|+.+.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                1233   2222    1345788899998855 67778889999988542   1 11 1222234788999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCe
Q 004885          694 LGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      +..++.+..-..|.+|.+....
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC
Confidence            8875555555678888887433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.19  E-value=8.4e-05  Score=83.67  Aligned_cols=154  Identities=12%  Similarity=0.113  Sum_probs=103.9

Q ss_pred             CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEE
Q 004885          555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD  625 (725)
Q Consensus       555 ~~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsP-d~~~Lasgs----~DgtIrvWD  625 (725)
                      .-.+.|+++.-+.  .++++|..+|.|.+..++...  ...+..+|...+++++|.+ |...||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4557888886643  478999999999999886532  2334567889999999999 556676663    266899999


Q ss_pred             CCCCCe-ee--EEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEE
Q 004885          626 TENPDY-SL--RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAA  700 (725)
Q Consensus       626 l~~~~~-~l--~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~  700 (725)
                      +.+.-. +.  ..|. +....+.++||..+.+ ++.+|...+.|+++|++........-....+..+.++| .++|+ +.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~-cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF-CS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce-ec
Confidence            987521 11  1122 2445677899996655 77788888899999998322111111123455666666 33444 55


Q ss_pred             EcCCeEEEEE
Q 004885          701 AIENYISILD  710 (725)
Q Consensus       701 s~Dg~V~IwD  710 (725)
                      ..|+.|.+||
T Consensus       214 ~~dg~iAiwD  223 (783)
T KOG1008|consen  214 NSDGDIAIWD  223 (783)
T ss_pred             cccCceeecc
Confidence            6699999999

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.083  Score=59.21  Aligned_cols=157  Identities=14%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 004885          558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  621 (725)
Q Consensus       558 V~~i~fSpdg~~LaSg-s~Dg----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----------tI  621 (725)
                      +..+++|||+++||.+ +..|    .|+|+|+++++.+....... ....+.|.++++.|+....|.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4468899999988755 3334    69999999997764321111 122399999988776665433           37


Q ss_pred             EEEECCCCCee-eEEEecCCCC--eEEEEEccCCCeEEEEEeCCC---cEEEEECCCC-----eeEEEEecCCCeEEEEE
Q 004885          622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF  690 (725)
Q Consensus       622 rvWDl~~~~~~-l~~~~~h~~~--V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~-----~~v~~~~~~~~V~sv~f  690 (725)
                      ++|.+.++... ...|.+....  ...+..+++++++++......   .|++.|+..+     ...........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888876532 3444443332  578889999998887665433   4888898875     33344443344433332


Q ss_pred             ecCCCEEEEEEc---CCeEEEEECCCCe
Q 004885          691 QPRLGRILAAAI---ENYISILDVETQV  715 (725)
Q Consensus       691 spdg~~Lla~s~---Dg~V~IwDl~tg~  715 (725)
                      +..+.+++.+..   .+.|...++.+..
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            333333333322   3567777776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.12  E-value=0.0012  Score=45.14  Aligned_cols=38  Identities=37%  Similarity=0.575  Sum_probs=33.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd  583 (725)
                      ..+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566678899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.12  E-value=0.0094  Score=67.16  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEECCCC
Q 004885          556 SKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT--VRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~Dgt--IrvWDl~~~  629 (725)
                      +.-...+|+|||++|+ +...|+.  |+++|+...... .+..-.+.-+.-.|+|||++|+-.+ ..|.  |.+.|++..
T Consensus       238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            3345688999999765 4455664  556677665533 3443334444667999999876554 4554  555566655


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      .  ...+......-....|+|+|+++++....+|.  |.+.|+.++..++.+.........+|.+++..++..+.
T Consensus       317 ~--~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         317 Q--VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             c--eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            5  34444333333478899999977766644455  77778877665666655555566677888777665544

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.07  E-value=0.00083  Score=47.06  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHhcCCCC
Q 004885            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS   39 (725)
Q Consensus         9 ~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~   39 (725)
                      +..|+..|++||.+.|+.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            4579999999999999999999999998764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>smart00320 WD40 WD40 repeats

Probab=97.06  E-value=0.0018  Score=44.16  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.4

Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      +.++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.03  E-value=0.019  Score=64.10  Aligned_cols=135  Identities=13%  Similarity=0.058  Sum_probs=88.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCeEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMS  645 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V~s  645 (725)
                      +..+++++.++.+..+|..+++.+.....  .....+..  .+..|+.++.|+.|..+|..+++. +-..... .....+
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~s  330 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTA  330 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccC
Confidence            45677777899999999999987765432  11112222  466788888999999999998862 2211111 111222


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEE-EEEecCCCEEEEEEcCCeEEEEEC
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~s-v~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ....  +. .++.++.||.|+++|..+|+.+..++. ...+.+ ..+.  ++.|++++.||.|+.+++
T Consensus       331 p~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        331 PVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence            2222  33 455778899999999999999888765 233332 2232  468899999999998875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0026  Score=72.02  Aligned_cols=92  Identities=17%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE-EEEEccCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004885          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (725)
Q Consensus       598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~-sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v  676 (725)
                      -.|.-+.|+|..+.||++..+|.|-++.+.- . .+.++.-+...|+ +++|.|||+ +++.|-.||+|++.|+.++..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence            4577889999999999999999998888873 3 4666665666666 999999987 8889999999999999999888


Q ss_pred             EE--EecCCCeEEEEEec
Q 004885          677 GV--FKCQSGATQMRFQP  692 (725)
Q Consensus       677 ~~--~~~~~~V~sv~fsp  692 (725)
                      ..  +.....|.++.|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            87  44467788888863

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.01  E-value=0.015  Score=67.32  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-------
Q 004885          565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY-------  631 (725)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~-------  631 (725)
                      ++|++...+  +++|.|.|..+     ...+..+. -......|+++||++++++++. +.+|.|.|+.+...       
T Consensus       286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            467766653  67899999987     34554443 3566789999999999877655 88999999987441       


Q ss_pred             ----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885          632 ----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       632 ----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                          .+....- .-.-...+|+++|. .+.|.-.|..|..||+..
T Consensus       363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                1122221 22334578999986 777888899999999975

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.00  E-value=0.047  Score=56.22  Aligned_cols=137  Identities=12%  Similarity=0.040  Sum_probs=93.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl  646 (725)
                      ..+++.|++.+.+.-.|..+++.+..-. -...|.+-+.- -+++++.|+..|.+.+.+..++.. ...|.....--...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehhhhccce
Confidence            3478899999999999999988775432 12334333322 367899999999999999999873 33333222222233


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-EEEEEecCCCEEEEEEcCCeEE
Q 004885          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V-~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      ..++++. ++..++.|+..+..|.++..|+...+..+.+ .+-+..|-...|+++...|.|-
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence            4567776 6778899999999999999999998875543 3445566334555555544443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.0058  Score=70.15  Aligned_cols=115  Identities=16%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      .|.--+++..+++|+.|+.-|.|++|+-..+.... ...+-.+.+..+.++++..++|.|+..|.|.|+-+.........
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34444555578999999999999999977655432 23334556667778888888999999999999988764321111


Q ss_pred             -----EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885          636 -----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       636 -----~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                           -..|...|++++|++++..+ ++|+..|.|.+-.+..
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~-ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKL-YSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEE-eecCCCceEEEEEech
Confidence                 12367889999999999855 5999999998887776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.15  Score=55.01  Aligned_cols=163  Identities=13%  Similarity=0.050  Sum_probs=102.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----C-CCCeEEEEEcCCCCEEEEEeC-----C----CeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----H-TQWITDVRFSPSLSRLATSSA-----D----RTV  621 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~----H-~~~V~~IafsPd~~~Lasgs~-----D----gtI  621 (725)
                      +.+.++..-..+..|+++.  .-+++++.+++..+..+..    . ....+++...|+|.+.++...     .    ..-
T Consensus        66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            3345555554555666664  3467777766555333211    1 245678899999887776544     1    122


Q ss_pred             EEEECC-CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--C----eeEEEEe-c-CCCeEEEEEec
Q 004885          622 RVWDTE-NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFK-C-QSGATQMRFQP  692 (725)
Q Consensus       622 rvWDl~-~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~----~~v~~~~-~-~~~V~sv~fsp  692 (725)
                      +||-+. .+. .++.+..+-..-+.|+|+|+++.++++=+..+.|+-|++..  +    +....+. . .+..-.++...
T Consensus       144 ~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         144 SLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             eEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            455544 333 46666666667789999999997777766668888888762  1    1111111 1 35567788888


Q ss_pred             CCCEEEEEEcCC-eEEEEECCCCeEEEEEeC
Q 004885          693 RLGRILAAAIEN-YISILDVETQVCRLKLQV  722 (725)
Q Consensus       693 dg~~Lla~s~Dg-~V~IwDl~tg~~v~~l~G  722 (725)
                      +|.+.+++..+| .|.+|+.. |+.+..++-
T Consensus       223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             CCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            877765555554 89999998 888877754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.92  E-value=0.048  Score=49.46  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=70.2

Q ss_pred             eEEEEEcC---C-CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885          600 ITDVRFSP---S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (725)
Q Consensus       600 V~~IafsP---d-~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~  675 (725)
                      |+++++..   + ...|++|+.|..||+|+-+.   .+..+..+ +.|++++-...+  .|+.+-.+|+|-+|+-.  ..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~--~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGGG--RFAYALANGTVGVYDRS--QR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCCC--EEEEEecCCEEEEEeCc--ce
Confidence            45555544   3 35799999999999998764   55666544 567777776664  47788889999999863  34


Q ss_pred             EEEEecCCCeEEEEEecCCC----EEEEEEcCCeEEE
Q 004885          676 AGVFKCQSGATQMRFQPRLG----RILAAAIENYISI  708 (725)
Q Consensus       676 v~~~~~~~~V~sv~fspdg~----~Lla~s~Dg~V~I  708 (725)
                      +...+....++++++..-.+    .|++|-.+|.|-+
T Consensus        74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            45555556688887654332    6888877887754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.84  E-value=0.089  Score=55.31  Aligned_cols=144  Identities=16%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE---------
Q 004885          566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---------  635 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~---------  635 (725)
                      .++.|+.|.++| |+++++.. .......  +...|..+...|+-+.|++-+ |+.+.++++..-......         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            578899999888 99999833 3333333  233499999999877776665 599999998764421110         


Q ss_pred             ----EecCCCCeEEEE--EccCCCeEEEEEeCCCcEEEEECCCC-----eeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       636 ----~~~h~~~V~sl~--fsP~g~~llaSgs~Dg~I~IwDl~t~-----~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                          .......+..++  -...+...++.+. ...|.||.....     .....+.....+.+++|..  ..++++. .+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-SK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-CC
Confidence                111223455444  1233444554444 458888877542     4666777788999999994  4565555 45


Q ss_pred             eEEEEECCCCeEE
Q 004885          705 YISILDVETQVCR  717 (725)
Q Consensus       705 ~V~IwDl~tg~~v  717 (725)
                      ...+.|+.++...
T Consensus       158 ~f~~idl~~~~~~  170 (275)
T PF00780_consen  158 GFYLIDLNTGSPS  170 (275)
T ss_pred             ceEEEecCCCCce
Confidence            5888999877543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.83  E-value=0.12  Score=55.93  Aligned_cols=140  Identities=11%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             CCEEEEEeC----------CCcEEEEECCCC----eEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          567 GKLLATGGH----------DKKAVLWCTESF----TVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       567 g~~LaSgs~----------Dg~V~IWdl~~~----~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      ..+|++|..          .|.|.++++...    ..+..+  ....++|++|+-. ++ +|+.+. ++.|.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            357776643          288999999873    122222  2357889998876 33 444444 5889999998877


Q ss_pred             -eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885          631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       631 -~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                       .....+......|.++....  + +++.|+....|.++..+. ...+..+..   ...++++.|-+++..++++..+|.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~--~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFK--N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEET--T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             cchhhheecceEEEEEEeccc--c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence             33334443444677777663  3 666788777788774443 232333322   455889999866678888888999


Q ss_pred             EEEEECC
Q 004885          706 ISILDVE  712 (725)
Q Consensus       706 V~IwDl~  712 (725)
                      |.++...
T Consensus       196 l~~l~~~  202 (321)
T PF03178_consen  196 LFVLRYN  202 (321)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEC
Confidence            9999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.81  E-value=0.064  Score=60.79  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------CeeeEEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----------DYSLRTF  636 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~----------~~~l~~~  636 (725)
                      |.+|+..+.+ .|.+||+.+++.++.+...  .|..|.|++++.+++..+.+ ++.|++.+..          ...+..+
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence            8878777655 8999999999999988743  48999999999999888755 5677665433          0023334


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ......|.+.+|.-+  .++.+.. . .|+.  +-+|..........++.-+.+.+....++....|+.|..+.+.
T Consensus       193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            333578999999866  3444433 3 6766  4444433322225677777788866777777788888777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.78  E-value=0.14  Score=55.49  Aligned_cols=155  Identities=8%  Similarity=0.046  Sum_probs=96.3

Q ss_pred             CEEEEEeCCCcEEEEECC-CCeEEEE----eccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEecC-
Q 004885          568 KLLATGGHDKKAVLWCTE-SFTVKST----LEEHTQWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGH-  639 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~-~~~~i~~----l~~H~~~V-~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~~h-  639 (725)
                      ..|.+-|.||++.-..++ .++....    |.....++ ..-++...+..++-.+.+|.|+--|+....... ..+.-- 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            357777789999888887 3554322    11112222 233344444555557889988888887655211 111100 


Q ss_pred             ---------CCCeEEEEEccCCCeEEEEEeC--CC-------cEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEE
Q 004885          640 ---------STTVMSLDFHPSKEDLLCSCDN--NS-------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAA  700 (725)
Q Consensus       640 ---------~~~V~sl~fsP~g~~llaSgs~--Dg-------~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~  700 (725)
                               .+.---+++++..+.+++.-..  ++       .|.+||+.+++.+..+.....+.+|.++.+.. +|++.
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence                     1223346778766656654321  11       58899999999999999877888999998877 44444


Q ss_pred             E-cCCeEEEEECCCCeEEEEEeC
Q 004885          701 A-IENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       701 s-~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      + .++.|.|||..+|+.++++++
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCCeEEEEeCcCCcEEeehhc
Confidence            4 478999999999999999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.74  E-value=0.054  Score=49.17  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       558 V~~i~fSp---dg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      |+++++..   || +.|++|+.|..|+||+-+  ..+..+.. ...|++++-... ..|+.+-.+|+|-+|+-....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl---   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL---   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence            56666654   33 489999999999999744  56666665 456777766655 678888899999998775432   


Q ss_pred             EEEecCCCCeEEEEEc---cCCCeEEEEEeCCCcEE
Q 004885          634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fs---P~g~~llaSgs~Dg~I~  666 (725)
                      -..+. ...++++++.   -+|..-|++|-.+|.|-
T Consensus        75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            12221 2235555443   34444566777788764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.71  E-value=0.18  Score=58.11  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=92.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeeE
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~--V~~IafsP--d~~~Lasgs---------~DgtIrvWDl~~~~~~l~  634 (725)
                      ..++.++.|+.|+-+|.++++.+..+......  -..+.-+|  .+.+++.++         .++.|..+|..+++. +-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-ee
Confidence            57778888999999999999998877543221  01122222  134555553         367889999998873 33


Q ss_pred             EEecC-C-------------------CCe-EEEEEccCCCeEEEEEeCCC------------------cEEEEECCCCee
Q 004885          635 TFTGH-S-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSC  675 (725)
Q Consensus       635 ~~~~h-~-------------------~~V-~sl~fsP~g~~llaSgs~Dg------------------~I~IwDl~t~~~  675 (725)
                      .+... .                   ..| ....+++.+..++ .++.++                  .|.-+|+++|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            32211 1                   001 1234454445344 454444                  699999999999


Q ss_pred             EEEEecC-CCe------EEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          676 AGVFKCQ-SGA------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       676 v~~~~~~-~~V------~sv~fs----pdg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +..+... ...      ....+.    -++.   .+++++.+|.|..+|+++|+.+-..+
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            9887641 111      111111    1232   46677779999999999998876553

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.018  Score=64.35  Aligned_cols=143  Identities=15%  Similarity=0.162  Sum_probs=98.2

Q ss_pred             CCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEECCCCCe-eeEEE
Q 004885          566 DGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-------LATSSADRTVRVWDTENPDY-SLRTF  636 (725)
Q Consensus       566 dg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-------Lasgs~DgtIrvWDl~~~~~-~l~~~  636 (725)
                      +.++ |.++..-..|+-.|++.|+.+..++-|.. |+-+.+.|+.+.       -+.|-.|..|.-||.+-... .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            4554 44566667899999999999999987766 888888886432       35566788999999985442 23333


Q ss_pred             ecCC----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          637 TGHS----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       637 ~~h~----~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      .+|.    ..-.|++-..+|  .+|.|+.+|.||+||--.......+++ ..+|..|..+.+|.+|++ .++..+.+.|+
T Consensus       423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEE-ecccEEEEEEE
Confidence            3332    223444444444  678999999999999743333344444 688999999999888764 55677777765


Q ss_pred             C
Q 004885          712 E  712 (725)
Q Consensus       712 ~  712 (725)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            3

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.69  E-value=0.64  Score=48.76  Aligned_cols=160  Identities=14%  Similarity=0.183  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------eccCCCCeEEEE--EcCCCCEEEEEeCCCeE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV  621 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--------------l~~H~~~V~~Ia--fsPd~~~Lasgs~DgtI  621 (725)
                      |..+...++-+.|++-+ |+.|+++++........              .......+..++  -...+...+.....++|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            89999998877776664 59999999876433321              111223344444  11233344444446688


Q ss_pred             EEEECCCC--C--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----------------
Q 004885          622 RVWDTENP--D--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------------  680 (725)
Q Consensus       622 rvWDl~~~--~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----------------  680 (725)
                      .+|.....  .  ...+.+. ....+.+++|..+   .+|.+.. ....+.|+.++.....+.                 
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence            88887653  1  1334443 3367888999843   4445543 346666666443221110                 


Q ss_pred             -----c------------------CC-C--eEEEEEec-------CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          681 -----C------------------QS-G--ATQMRFQP-------RLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       681 -----~------------------~~-~--V~sv~fsp-------dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                           .                  .+ .  -..+.|..       ...||++.. ++.|.||++.++++++++.+++
T Consensus       192 ~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  192 LGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFS-SNSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             eEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEEC-CCEEEEEECcCCcEEEEEECCC
Confidence                 0                  00 0  01222221       124555544 4669999999999999998753

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.06  Score=58.10  Aligned_cols=144  Identities=14%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             CeEEEEEcCCCCEEEEEeC------C---CcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004885          557 KVESCHFSPDGKLLATGGH------D---KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD  625 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~------D---g~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWD  625 (725)
                      .-+++.+.|+|.+.++...      +   ..-.||-++ .+..++.+..|-..-+.|+|+||++.|+.+.. .+.|..|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            3567888888887665433      1   112445444 46666667766667789999999988877765 47888887


Q ss_pred             CCC--C---C-eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCE
Q 004885          626 TEN--P---D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR  696 (725)
Q Consensus       626 l~~--~---~-~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~  696 (725)
                      +..  .   . .....+..+.+..-.++.+.+|. +.+++..+ +.|.+|+.. ++.+..++.. ..+++++|- |+.+.
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence            762  1   1 11222223446666778888887 44333334 389999999 9999998875 778999985 44555


Q ss_pred             EEEEEc
Q 004885          697 ILAAAI  702 (725)
Q Consensus       697 Lla~s~  702 (725)
                      |++++.
T Consensus       270 L~iTs~  275 (307)
T COG3386         270 LYITSA  275 (307)
T ss_pred             EEEEec
Confidence            555544

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.63  E-value=0.06  Score=63.27  Aligned_cols=145  Identities=8%  Similarity=0.015  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---------
Q 004885          556 SKVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---------  618 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs------~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---------  618 (725)
                      ..+...+++|||+.++..-      .|.  .|.+++.. +.......+  ...+.-.|+|++..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            3578899999999877665      244  45555542 222222333  237888999998877766532         


Q ss_pred             ---CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE---EECCCCee-E---EEEec--CCCeE
Q 004885          619 ---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSC-A---GVFKC--QSGAT  686 (725)
Q Consensus       619 ---gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I---wDl~t~~~-v---~~~~~--~~~V~  686 (725)
                         +.+.+.+++.+.  ...  ...+.|..+.|+|||..+++..  ++.|++   -....|.. +   ..+..  ...+.
T Consensus       427 ~~~gql~~~~vd~ge--~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        427 PATGQLARTPVDASA--VAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CCCceEEEEeccCch--hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence               223333443332  111  2346799999999999877665  467777   44344431 1   11222  23468


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEE
Q 004885          687 QMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      ++.|..++. |+++..++...+|.
T Consensus       501 ~l~W~~~~~-L~V~~~~~~~~v~~  523 (591)
T PRK13616        501 SLDWRTGDS-LVVGRSDPEHPVWY  523 (591)
T ss_pred             cceEecCCE-EEEEecCCCCceEE
Confidence            899999966 45555544333443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.62  E-value=0.088  Score=60.65  Aligned_cols=153  Identities=10%  Similarity=0.072  Sum_probs=95.5

Q ss_pred             EEEcCCCCEEEEEeCCC------------------cEEEEECCCCeEEEEeccCCCCeE------EEEEc----CCCC--
Q 004885          561 CHFSPDGKLLATGGHDK------------------KAVLWCTESFTVKSTLEEHTQWIT------DVRFS----PSLS--  610 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg------------------~V~IWdl~~~~~i~~l~~H~~~V~------~Iafs----Pd~~--  610 (725)
                      .++.+.+.+++.++.|+                  .|.-+|.++++.+..+..-...+.      ...+.    -++.  
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~  301 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV  301 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence            34444556777776554                  799999999999887642111111      00111    1232  


Q ss_pred             -EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE-----------------EeCCCcEEEEECCC
Q 004885          611 -RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-----------------CDNNSEIRYWSINN  672 (725)
Q Consensus       611 -~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS-----------------gs~Dg~I~IwDl~t  672 (725)
                       .++.++.+|.+...|.++++ .+-.....   ...+..+|  ..+++.                 ...+|.|.-+|+.+
T Consensus       302 ~~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         302 PAIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             EEEEEECCCceEEEEECCCCc-EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence             57888899999999999998 33332211   11233344  223321                 12357899999999


Q ss_pred             CeeEEEEecC---------CCe--EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          673 GSCAGVFKCQ---------SGA--TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       673 ~~~v~~~~~~---------~~V--~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |+.+......         ...  ..+.  -.++.|++++.||.|+.+|.++|+.+-+++
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            9988777643         111  1222  245688888899999999999999887765

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.57  E-value=0.061  Score=56.19  Aligned_cols=156  Identities=15%  Similarity=0.149  Sum_probs=97.6

Q ss_pred             EEEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE--------EC
Q 004885          561 CHFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW--------DT  626 (725)
Q Consensus       561 i~fSpdg~~LaSgs~D-----g~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW--------Dl  626 (725)
                      -+|||||.+|...-.|     |.|-|||.+. ...+..+..|.-.-..+.|.+|++.++.+.  |-|...        ++
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl  196 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL  196 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence            3689999998876543     6899999875 456677888888888999999999988874  333333        22


Q ss_pred             CCCCeeeEEE-------------e--cCCCCeEEEEEccCCCeEEEEEeCCCc-----EEEEECCCCeeEEEEec-----
Q 004885          627 ENPDYSLRTF-------------T--GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFKC-----  681 (725)
Q Consensus       627 ~~~~~~l~~~-------------~--~h~~~V~sl~fsP~g~~llaSgs~Dg~-----I~IwDl~t~~~v~~~~~-----  681 (725)
                      ++.+..+..+             .  -+.-.|..++..++|. +++.|-..|-     --|=-...++.+..+..     
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~  275 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT  275 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence            2222111111             1  1234578888888877 5555543221     11111123333333332     


Q ss_pred             ---CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEE
Q 004885          682 ---QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLK  719 (725)
Q Consensus       682 ---~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~  719 (725)
                         ...|-+|+.+.+.++++..+- .+...|||..||.++..
T Consensus       276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence               234778888877677666655 56789999999987753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.52  E-value=0.01  Score=68.11  Aligned_cols=117  Identities=8%  Similarity=0.108  Sum_probs=87.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (725)
Q Consensus       596 H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~  675 (725)
                      |...|.--+++..+++++.|+.-|.+.+|+-..+........+..+.+..++.+++ .+++|+|+..|.|.|+-+..+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence            34455555667788999999999999999988776444444444455566667776 45888888899999998875322


Q ss_pred             -----EEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          676 -----AGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       676 -----v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                           +..+.  +...|++++|++++..+++|...|.|..-.+.+
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                 11111  245699999999999999999999999888876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.51  E-value=0.034  Score=61.20  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       564 Spdg~~LaSg---------s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      |||+++++..         +..+.+.|||+++++....... ...+....|+|+++.++-.. ++.|.++++.++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5788876663         2346789999998766544333 56788999999999988876 67899998876642212


Q ss_pred             EEec-------C---------CCCeEEEEEccCCCeEEEEEeCCCcEEEEE-----------------------------
Q 004885          635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWS-----------------------------  669 (725)
Q Consensus       635 ~~~~-------h---------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD-----------------------------  669 (725)
                      +..+       -         -+.-..+-|+|+++++++..-++..|+.+.                             
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2222       0         122356889999997776655555444433                             


Q ss_pred             ------CCCCeeEE-EEe-----cCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 004885          670 ------INNGSCAG-VFK-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL  718 (725)
Q Consensus       670 ------l~t~~~v~-~~~-----~~~~V~sv~fspdg~~Lla~s~D-----g~V~IwDl~tg~~v~  718 (725)
                            +.+++... ...     ...-+..+.|.+++..|++.-.+     ..|.++|+.++++..
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV  224 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence                  32222210 000     01226778899997745554332     357788888875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.49  E-value=0.1  Score=57.40  Aligned_cols=149  Identities=19%  Similarity=0.257  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCeEEEEecc-CCCCe---EEEEEc-CCC-CEEEEEeCCCeEE
Q 004885          554 STSKVESCHFSPDGKLLAT--GGHDK---KAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSL-SRLATSSADRTVR  622 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaS--gs~Dg---~V~IWdl~~~~~i~~l~~-H~~~V---~~Iafs-Pd~-~~Lasgs~DgtIr  622 (725)
                      -...+..+.|.++++.|+.  ..++.   .+.++|..++.+...++. ....|   ..+.|. +++ .+|.....||.-+
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            3455889999999883333  34433   466778877654433322 22333   355554 554 4555666788655


Q ss_pred             EEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCe-EEEEEecCCCE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGR  696 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V-~sv~fspdg~~  696 (725)
                      ||-++........+......|.. +.|+++++.+++++..++    .|+..++..+..+..+.+.... ..+.|+|++++
T Consensus       262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKY  341 (353)
T ss_dssp             EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred             EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCE
Confidence            55444433235566655566744 778999888888887633    5666677733445555554444 49999999998


Q ss_pred             EEEEEc
Q 004885          697 ILAAAI  702 (725)
Q Consensus       697 Lla~s~  702 (725)
                      ++...+
T Consensus       342 ~v~~~s  347 (353)
T PF00930_consen  342 YVDTYS  347 (353)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.45  E-value=0.13  Score=58.48  Aligned_cols=145  Identities=11%  Similarity=0.102  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC-----CeEEEEec-cCC--CC--eEEEEEcCCCCEEEEEeCCCeE
Q 004885          556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTES-----FTVKSTLE-EHT--QW--ITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       556 ~~V~~i~fSpd----g~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~-~H~--~~--V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      ..|..+.|.|-    ...|++.-+.+.|.||-+..     .+.+..-. +..  .+  --.+.|||....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            45999999984    33566667889999998742     22221111 111  11  2367799999888877666655


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-----EEEEecCCCeEEEEEecCCCE
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRLGR  696 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-----v~~~~~~~~V~sv~fspdg~~  696 (725)
                      .+++++.....+..-....+.|.|.||..||..++++.+..=.-+|||-.....     -..|...+.|.+|.-.-| ..
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq  215 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ  215 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence            677777655455554556688999999999999888777666778998754322     123333455666554433 33


Q ss_pred             EEEEE
Q 004885          697 ILAAA  701 (725)
Q Consensus       697 Lla~s  701 (725)
                      ++++.
T Consensus       216 VAvaT  220 (671)
T PF15390_consen  216 VAVAT  220 (671)
T ss_pred             EEEEe
Confidence            44433

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.34  E-value=0.4  Score=53.97  Aligned_cols=157  Identities=10%  Similarity=0.024  Sum_probs=81.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTE  627 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW-Dl~  627 (725)
                      +.|.++.|+.+.+ |++...||++++||+.... ...+       .-....|..+.+..+|-.+++  .++.|.+. +..
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence            7899999987555 5566689999999986333 1111       111111222233334433333  23333332 222


Q ss_pred             CCCeeeEEE----------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEE
Q 004885          628 NPDYSLRTF----------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (725)
Q Consensus       628 ~~~~~l~~~----------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~L  697 (725)
                      ... ..+.+          ..+.....-..++.+.. +.+....++.|.+.+-.....   +...+++..|+++|+++++
T Consensus       157 ~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  157 EPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             ccc-hhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEE
Confidence            111 11111          00111000022333433 223333345555444332211   3334689999999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEe
Q 004885          698 LAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.-..+|.+.|.+..-.+++..+.
T Consensus       232 Al~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  232 ALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             EEEECCCCEEEEECcccceeEEee
Confidence            888889999998876666665554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.28  E-value=0.0024  Score=74.67  Aligned_cols=164  Identities=9%  Similarity=0.090  Sum_probs=102.5

Q ss_pred             EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CeEE-----EEeccCCCCeEEEEEcC---CCCEEEEEeC
Q 004885          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES--FTVK-----STLEEHTQWITDVRFSP---SLSRLATSSA  617 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~--~~~i-----~~l~~H~~~V~~IafsP---d~~~Lasgs~  617 (725)
                      ..+++..+.|-.++|-. +...++  -.-|.+.|||++-  |+..     +........+.-|.|+|   +..+++.+..
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            34678888999999954 333333  3446788998753  4332     22233344556666666   6677788888


Q ss_pred             CCeEEEEECCCCCeeeEEEecCCCCeEEEE-----------EccCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec
Q 004885          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC  681 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~-----------fsP~g~~llaSgs~Dg~I~IwDl~-----t~~~v~~~~~  681 (725)
                      +++|++..+++..  ...|.+|..++..++           .+|||. +|++++.||.+++|-+.     .-.|++.++.
T Consensus       204 ~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp  280 (1283)
T KOG1916|consen  204 GGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKP  280 (1283)
T ss_pred             CCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence            9999998877654  244555766655544           578987 77788889988887653     4456666665


Q ss_pred             CCCeEEEEEecC---------CC--EEEEEEc-CCeEEEEECCCCeEE
Q 004885          682 QSGATQMRFQPR---------LG--RILAAAI-ENYISILDVETQVCR  717 (725)
Q Consensus       682 ~~~V~sv~fspd---------g~--~Lla~s~-Dg~V~IwDl~tg~~v  717 (725)
                      +.+-..+||..+         +.  ++++++. ...+++|.....+|+
T Consensus       281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            443333444321         11  2344433 467999998877776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.15  E-value=0.13  Score=58.65  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             CCeEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 004885          556 SKVESCHFSPDGKLLA-TGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       556 ~~V~~i~fSpdg~~La-Sgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd----~~~Lasgs~DgtIrvWDl~~  628 (725)
                      -+|..++|. ||+.++ +.-  ..|.+++=|   .+.+..|    .-|..+.|.|-    ...|+..-..+.|.||-+.-
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            458899998 677444 432  334444322   2334333    45899999983    33566667789999998852


Q ss_pred             CC----eeeEEEecCC---CC--eEEEEEccCCCeEEEEEeCCCcEEEEECCC--CeeEEEEecCCCeEEEEEecCCCEE
Q 004885          629 PD----YSLRTFTGHS---TT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGRI  697 (725)
Q Consensus       629 ~~----~~l~~~~~h~---~~--V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~~~v~~~~~~~~V~sv~fspdg~~L  697 (725)
                      ..    ..+..-..+.   -+  --.+.|||....+.+-...|-.| +++++.  ......++..+.|.|.||..||.+|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            11    0111111111   11  24578999987444434444333 566653  3444556668889999999999988


Q ss_pred             EEEEcC-CeEEEEEC
Q 004885          698 LAAAIE-NYISILDV  711 (725)
Q Consensus       698 la~s~D-g~V~IwDl  711 (725)
                      +++-.. =.-+|||-
T Consensus       171 VVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEEeCCeEEEEEecC
Confidence            777543 34677873

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.11  E-value=0.11  Score=62.27  Aligned_cols=98  Identities=10%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             EEEEEeCCCcEEEEECCCC--eEEEE-ec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885          569 LLATGGHDKKAVLWCTESF--TVKST-LE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (725)
Q Consensus       569 ~LaSgs~Dg~V~IWdl~~~--~~i~~-l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V  643 (725)
                      -.++|-.+..|..||.+-.  +++.. .+  .......|++-+.+| +||+|+.+|.||+||-.. ......+.+...+|
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPI  621 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCe
Confidence            4566777889999998753  22211 11  123456777766654 799999999999999543 33556667778999


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl  670 (725)
                      ..|+.+.||+++||||.  ..|.+++.
T Consensus       622 ~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEeec--ceEEEEEE
Confidence            99999999999998884  67888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.07  E-value=0.52  Score=56.61  Aligned_cols=81  Identities=25%  Similarity=0.326  Sum_probs=56.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCeE--E-EEe--------ccCCCCeEEEEEcCC---
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV--K-STL--------EEHTQWITDVRFSPS---  608 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~----------~~~~--i-~~l--------~~H~~~V~~IafsPd---  608 (725)
                      .-...|..|.++++|++||..|..+. .|..+.          .++.  . +++        ..+...|..+.|||.   
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            34456899999999999999887664 443332          1111  1 111        134567899999995   


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          609 LSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       609 ~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      +..|++-..|+++|+||+.....+..
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~  186 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQ  186 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeE
Confidence            57899999999999999986554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=95.93  E-value=0.15  Score=59.68  Aligned_cols=148  Identities=13%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 004885          566 DGKLLATGGHDK-----KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------------  619 (725)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-------------------  619 (725)
                      ++++.+.||.++     +|.+||..+.+  .+..+.........+.+  ++...+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            678888888764     47889876542  22222111111122222  566667776542                   


Q ss_pred             ----eEEEEECCCCCee-eEEEecCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCC-CeeE--EEEecCCCe
Q 004885          620 ----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN-GSCA--GVFKCQSGA  685 (725)
Q Consensus       620 ----tIrvWDl~~~~~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~D------g~I~IwDl~t-~~~v--~~~~~~~~V  685 (725)
                          +|..||..+..-. +..+.........+.+  + ..+++.|+.+      ..|..||..+ .+..  ..+......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--K-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEE--C-CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                4667777765411 1111101111111222  2 3477777643      2467899887 4544  333322222


Q ss_pred             EEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEE
Q 004885          686 TQMRFQPRLGRILAAAIEN--YISILDVETQVCRLK  719 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~  719 (725)
                      ..++.. ++..+++|+.|+  .|..||..+.+-...
T Consensus       506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             ceeEEE-CCEEEEEeeecceeehhhcCcccccccch
Confidence            333333 456677777777  789999988754433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.93  E-value=3.8  Score=45.82  Aligned_cols=159  Identities=13%  Similarity=0.062  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----eEEEEeccCCCCe-EEEEEcCCCCEEEEEeC---CCeEEEEE
Q 004885          558 VESCHFSPDGKLLATGGHD----KKAVLWCTESF----TVKSTLEEHTQWI-TDVRFSPSLSRLATSSA---DRTVRVWD  625 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~----~~i~~l~~H~~~V-~~IafsPd~~~Lasgs~---DgtIrvWD  625 (725)
                      ...+..++|+++|+..+..    ..|++.|+...    .....+......+ ..+... .+.+++....   ++.|...+
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~  307 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD  307 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence            6688899999987754332    34777788764    2233333333334 444444 4444444332   45777778


Q ss_pred             CCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885          626 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       626 l~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla  699 (725)
                      +.+...  ....+..+...+.-..+...+.++++....++  .|++||+..+.....+..  .+.|..+...++...+..
T Consensus       308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~  387 (414)
T PF02897_consen  308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRF  387 (414)
T ss_dssp             TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEE
T ss_pred             ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEE
Confidence            887762  23356666665444555556677777776665  488999994555555554  334566665666665544


Q ss_pred             EEc----CCeEEEEECCCCeEE
Q 004885          700 AAI----ENYISILDVETQVCR  717 (725)
Q Consensus       700 ~s~----Dg~V~IwDl~tg~~v  717 (725)
                      ..+    -.+|..||+.+++..
T Consensus       388 ~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  388 SYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEETTEEEEEEEEETTTTCEE
T ss_pred             EEeCCCCCCEEEEEECCCCCEE
Confidence            433    378999999998653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.085  Score=63.75  Aligned_cols=140  Identities=11%  Similarity=0.054  Sum_probs=89.1

Q ss_pred             CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEE-----EEe------ccCCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 004885          557 KVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVK-----STL------EEHTQWITDVRFSPS-LSRLATSSADRTVR  622 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i-----~~l------~~H~~~V~~IafsPd-~~~Lasgs~DgtIr  622 (725)
                      .|..+...+|+...++.  +.+-.|.+||+++....     .-|      ........++.|.|. -...+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            35555556677754443  44458899998753211     111      222345668889985 34567788899999


Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI  697 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~L  697 (725)
                      |..+......+..+ .....+++|+|+|.|. -++.|...|++.-|-.. ......+.+     ...|.+|+|-....++
T Consensus       182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhccc-CcccceeeEEeccccc-eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            98876544223332 2345689999999998 55688888998877654 333333332     3679999998775555


Q ss_pred             EE
Q 004885          698 LA  699 (725)
Q Consensus       698 la  699 (725)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            44

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.87  E-value=1.2  Score=51.88  Aligned_cols=151  Identities=11%  Similarity=0.058  Sum_probs=90.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeeEEEe
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsP--d~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      +..|+.++.|+.|.-+|.++++.+....... ..-..+.-+|  .+..|+++.      .++.|..+|+++++. +-.+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEecc
Confidence            3467778889999999999999887654211 0001111122  133455543      268899999988873 22111


Q ss_pred             cC-------------------------------CCCe-EEEEEccCCCeEEEEEeC----CC-----------cEEEEEC
Q 004885          638 GH-------------------------------STTV-MSLDFHPSKEDLLCSCDN----NS-----------EIRYWSI  670 (725)
Q Consensus       638 ~h-------------------------------~~~V-~sl~fsP~g~~llaSgs~----Dg-----------~I~IwDl  670 (725)
                      .-                               ...| ..+.++|..+.+++-.++    ++           +|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            10                               0111 234667765544433222    12           5777899


Q ss_pred             CCCeeEEEEec-CCCe---------EEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEE
Q 004885          671 NNGSCAGVFKC-QSGA---------TQMRFQPRLG---RILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       671 ~t~~~v~~~~~-~~~V---------~sv~fspdg~---~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      ++|+....|.. +..+         .-+.+..+|+   .++.+..+|.++++|.++|+.+.
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            99999988874 2221         2223334665   45567779999999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.87  E-value=0.28  Score=57.49  Aligned_cols=126  Identities=10%  Similarity=0.099  Sum_probs=82.0

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCC
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSAD  618 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsP--d~~~Lasgs~D  618 (725)
                      ...+....++......+.-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.+++|..  ++..+++.+..
T Consensus        16 ~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~   95 (631)
T PF12234_consen   16 KIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP   95 (631)
T ss_pred             eEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC
Confidence            34455555665555566667776656655555555689999998876443222 3467899999964  78899999999


Q ss_pred             CeEEEEECC-----CCC---eeeEE--EecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885          619 RTVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       619 gtIrvWDl~-----~~~---~~l~~--~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl  670 (725)
                      ..|.+|.-.     +..   ..++.  +..|+ .+|.+..|.++|. ++ .++ +..+.|+|-
T Consensus        96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk  155 (631)
T PF12234_consen   96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDK  155 (631)
T ss_pred             cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECC
Confidence            999998542     211   12222  23333 5789999999986 43 333 356888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.74  E-value=0.6  Score=51.70  Aligned_cols=144  Identities=11%  Similarity=0.116  Sum_probs=80.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs-----------~Dg-~V~IWdl~~--~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      .....|+|.++|+++++..           ..+ .|.+++-.+  ++  ....+.......+.|+|.+++  |++++.+.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467899999999777653           223 677776432  32  233444444556889999888  44445454


Q ss_pred             eEEEEECCCC-----C--eeeEEEec----CCCCeEEEEEccCCCeEEEEEeC------------------CCcEEEEEC
Q 004885          620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI  670 (725)
Q Consensus       620 tIrvWDl~~~-----~--~~l~~~~~----h~~~V~sl~fsP~g~~llaSgs~------------------Dg~I~IwDl  670 (725)
                      .+++.|....     .  ..+..+..    +...+..++|.|+|..+++.++.                  .+.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4445455421     1  11112222    12347789999998744433321                  134555565


Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       671 ~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      .+++.............++|+++|..+++-.
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            5544332222233467899999977765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.66  E-value=1.1  Score=48.27  Aligned_cols=161  Identities=12%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      +.+++.+.  ..-.+.+..+..++||+++++++.-..+.-||--...-...-+.-...|..|.|.|++.+.+++ ..+.|
T Consensus       133 G~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~  209 (302)
T PF14870_consen  133 GKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI  209 (302)
T ss_dssp             TSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred             CCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE
Confidence            45565443  3445779999999999999988766666678754321122223346889999999997766654 78888


Q ss_pred             EEEECCCCCeeeEE----EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEecC
Q 004885          622 RVWDTENPDYSLRT----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPR  693 (725)
Q Consensus       622 rvWDl~~~~~~l~~----~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fspd  693 (725)
                      ++=+..........    +....-.+.+++|.+++. ++++|+ .|.+ +...+.|+.=...+.    ...++.|.|.+.
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            87772211101111    111223489999998866 665555 5655 556666654444432    445888998765


Q ss_pred             CCEEEEEEcCCeEEEE
Q 004885          694 LGRILAAAIENYISIL  709 (725)
Q Consensus       694 g~~Lla~s~Dg~V~Iw  709 (725)
                       ..-++.+.+|.|--|
T Consensus       287 -~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 -DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -TEEEEE-STTEEEEE
T ss_pred             -CceEEECCCcEEEEe
Confidence             556667888887655

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.63  E-value=1.4  Score=49.59  Aligned_cols=53  Identities=11%  Similarity=0.181  Sum_probs=41.2

Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecC
Q 004885          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPR  693 (725)
Q Consensus       640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspd  693 (725)
                      .+++..+++||+++ ++|....+|.+.|++.+-.+++..+..  ......|.|+-+
T Consensus       216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             CCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            36799999999998 566667789999998877777777665  356778888765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.61  E-value=0.19  Score=56.25  Aligned_cols=146  Identities=13%  Similarity=0.058  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------  628 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~--------  628 (725)
                      .|+++.|+++..-|++|...|.|.||.....+...  ..-...-..+.+.+-      ...++.-.+-|+..        
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            48999999998899999999999999764322111  000001111111110      00111222333322        


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeEEEEEec-----CC
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQP-----RL  694 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---------~~~V~sv~fsp-----dg  694 (725)
                      +-.+...+....+.|++++.+.-|  ++|.|..+|.+.|.|+|....+..-..         ...|+++.|.-     |+
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            112344555567899999998665  788999999999999998887766432         23588888862     22


Q ss_pred             ---CEEEEEEcCCeEEEEECC
Q 004885          695 ---GRILAAAIENYISILDVE  712 (725)
Q Consensus       695 ---~~Lla~s~Dg~V~IwDl~  712 (725)
                         -.+++|...|.+.+|.+-
T Consensus       153 ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEe
Confidence               257788888999999774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.61  E-value=0.023  Score=57.54  Aligned_cols=139  Identities=13%  Similarity=0.080  Sum_probs=79.9

Q ss_pred             EEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          570 LATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       570 LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                      |..-+.|+.|+-++++..+... .-..|....   ....-+..+++|+.+|.|.+|...-.......+..-...|.++  
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceec--
Confidence            4444668888888775432211 111122111   1122356789999999999998873321111111112233322  


Q ss_pred             ccCCCe--EEEEEeCCCcEEEEECCCCeeEEEEecC--CCeEEEEEecCCCEEEEE--EcCCeEEEEECCC
Q 004885          649 HPSKED--LLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAA--AIENYISILDVET  713 (725)
Q Consensus       649 sP~g~~--llaSgs~Dg~I~IwDl~t~~~v~~~~~~--~~V~sv~fspdg~~Lla~--s~Dg~V~IwDl~t  713 (725)
                      -|.++.  +.|++..||.||.|++.-.+.+....++  ..+........++.+..+  +.|..++.|+++.
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            344444  7888999999999999887776655542  344444455555666666  6677777777654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.58  E-value=0.93  Score=47.56  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=86.9

Q ss_pred             CeEEEEEcCCCCEEEEEe-CC--CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCee
Q 004885          557 KVESCHFSPDGKLLATGG-HD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs-~D--g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD-l~~~~~~  632 (725)
                      .+...+++++++.+|... .+  ..|+++...  .....+. -...+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            588999999999777655 23  345555433  3222221 123778889999977777766666667773 3333312


Q ss_pred             eEEEecC--CCCeEEEEEccCCCeEEEEEe--CCCcEEEEECC---CC---e---eEEEEec-CCCeEEEEEecCCCEEE
Q 004885          633 LRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG---S---CAGVFKC-QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       633 l~~~~~h--~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~---t~---~---~v~~~~~-~~~V~sv~fspdg~~Ll  698 (725)
                      .......  .+.|.++.++|||..+.+...  .++.|.|--+.   .+   .   .+..... ...++.+.|.+++..++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            2222211  127999999999998776653  34667766543   22   1   1111111 45789999999977666


Q ss_pred             EEEc
Q 004885          699 AAAI  702 (725)
Q Consensus       699 a~s~  702 (725)
                      .+..
T Consensus       182 ~~~~  185 (253)
T PF10647_consen  182 LGRS  185 (253)
T ss_pred             EeCC
Confidence            6554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.57  E-value=0.16  Score=59.67  Aligned_cols=112  Identities=12%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC---------
Q 004885          598 QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---------  662 (725)
Q Consensus       598 ~~V~~IafsPd~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D---------  662 (725)
                      ..+...+++|++..++...      .|..-.||-...+........+  ...+...|+|+|..+.+....+         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678999999998876654      2444444433222212222233  2378899999988665543322         


Q ss_pred             --CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCC
Q 004885          663 --SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQ  714 (725)
Q Consensus       663 --g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I---wDl~tg  714 (725)
                        +.|.+.+++.+....  .....|..+.|+|||.+++... ++.|.|   -....|
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG  481 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence              234444444433322  2246799999999999888766 467766   444444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.45  E-value=1.5  Score=48.57  Aligned_cols=191  Identities=14%  Similarity=0.190  Sum_probs=100.6

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      .++|..+..|+.-.+|...-.              .    .++.-|.... .......++++++.|+-...+..|+..|+
T Consensus        48 ~kllF~s~~dg~~nly~lDL~--------------t----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   48 RKLLFASDFDGNRNLYLLDLA--------------T----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred             CEEEEEeccCCCcceEEEEcc--------------c----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence            367778888888777732111              1    1222222222 22334667788888877666778999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCCCCeeeEEEecCC
Q 004885          585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSLRTFTGHS  640 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~Iafs--Pd~~~Lasgs~----------------------DgtIrvWDl~~~~~~l~~~~~h~  640 (725)
                      ++.+....+......+-...|.  .++..++.+-.                      ...|..-|+.++.  ...+....
T Consensus       110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~  187 (386)
T PF14583_consen  110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDT  187 (386)
T ss_dssp             TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES
T ss_pred             CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecC
Confidence            9987766666666666556664  34555443211                      1345556777765  45555566


Q ss_pred             CCeEEEEEccCCCeEEEEEeC---CC-cEEEEECCC-CeeEEEEec---CCCeEEEEEecCCCEEEEEEc-----CCeEE
Q 004885          641 TTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN-GSCAGVFKC---QSGATQMRFQPRLGRILAAAI-----ENYIS  707 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs~---Dg-~I~IwDl~t-~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-----Dg~V~  707 (725)
                      ..+..+-|+|....+++-|-.   +. .-|||-+++ +.-...+..   ...+..=-|.|||..|+.-+.     +..|.
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~  267 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA  267 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence            778999999998888887763   22 135665543 222222222   233555578999987765433     45688


Q ss_pred             EEECCCCeE
Q 004885          708 ILDVETQVC  716 (725)
Q Consensus       708 IwDl~tg~~  716 (725)
                      -+|+.+++.
T Consensus       268 ~~d~~t~~~  276 (386)
T PF14583_consen  268 GYDPDTGER  276 (386)
T ss_dssp             EE-TTT--E
T ss_pred             eeCCCCCCc
Confidence            888888753

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.44  E-value=3.5  Score=50.02  Aligned_cols=155  Identities=9%  Similarity=0.057  Sum_probs=93.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCe
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-------------TDVRFSP--SLSRLATSSA----------DRT  620 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V-------------~~IafsP--d~~~Lasgs~----------Dgt  620 (725)
                      ++..|+.++.|+.|.-.|.++++.+..+.. .+.|             ..+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            455788888999999999999998877632 2211             1111222  2445666643          688


Q ss_pred             EEEEECCCCCeeeEEEecC---------------C-CCe-EEEEEccCCCeEEEEE-----------------eCCCcEE
Q 004885          621 VRVWDTENPDYSLRTFTGH---------------S-TTV-MSLDFHPSKEDLLCSC-----------------DNNSEIR  666 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h---------------~-~~V-~sl~fsP~g~~llaSg-----------------s~Dg~I~  666 (725)
                      |+-+|+++++..-+...+.               . ..+ ..+++++....+++-.                 ...+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            9999999988322222110               0 011 2345555544333211                 1134577


Q ss_pred             EEECCCCeeEEEEec-CCCeE---------EEEEec-CCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          667 YWSINNGSCAGVFKC-QSGAT---------QMRFQP-RLG---RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       667 IwDl~t~~~v~~~~~-~~~V~---------sv~fsp-dg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      -.|+++|+.+..+.. +..+.         -+.+.. +|+   .++.+..+|.++++|.+||+.+..++
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            788899998887764 32221         122332 443   67777889999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.41  E-value=4.3  Score=42.73  Aligned_cols=169  Identities=16%  Similarity=0.155  Sum_probs=102.3

Q ss_pred             eeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEE-eCC
Q 004885          544 TFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS-SAD  618 (725)
Q Consensus       544 ~~~~~~~l~~H~~~-V~~i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasg-s~D  618 (725)
                      .++.+..+...... .-.+.|..++.++-+.+.-|  .|+.+|+.+++......-. ...-..|+...  +.|+-- =.+
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~  109 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSS
T ss_pred             eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecC
Confidence            34455555433333 34678867888888887766  7999999998876544321 22223444442  334333 347


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEec
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQP  692 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fsp  692 (725)
                      +...+||..+-+ .+..+.- .+.-+.++  .++..+++| +....|+++|..+.+.+..+..      -..++-+.|. 
T Consensus       110 ~~~f~yd~~tl~-~~~~~~y-~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  110 GTGFVYDPNTLK-KIGTFPY-PGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             SEEEEEETTTTE-EEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             CeEEEEccccce-EEEEEec-CCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence            899999999876 5666653 34557777  445656644 4466899999998887777764      1235667776 


Q ss_pred             CCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          693 RLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       693 dg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      + +.|.+--. ...|.+.|..+|+++..+.
T Consensus       184 ~-G~IyANVW~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  184 N-GKIYANVWQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             T-TEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred             c-CEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence            3 56665544 6789999999999988764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.40  E-value=0.56  Score=47.95  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=79.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--------CCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--------TQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--------~~~V~~IafsPd~~~La-sgs~DgtIrvWDl  626 (725)
                      ...++-..+|+|++++-.-.|-.. ++....+....-+.+|        -.--+.++|+.+.+.++ +-+.+-+|.-||.
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            345566778999985433222111 1111122222222233        23335788988766664 4456778888884


Q ss_pred             --CCCCe----eeEEEecC---C-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC
Q 004885          627 --ENPDY----SLRTFTGH---S-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR  693 (725)
Q Consensus       627 --~~~~~----~l~~~~~h---~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd  693 (725)
                        .++..    .+..++..   . -.--.++.+.+|. +++++-..++|..+|..+|+.+.+++. ...|+++||--.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence              33321    22222210   0 1112344455666 777777789999999999999999987 677999999643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.29  E-value=2.1  Score=45.33  Aligned_cols=168  Identities=13%  Similarity=0.139  Sum_probs=105.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      +.+-...|.++.|+|+.+.|++......-.||=...|..++++.-. -.....|.|.-++.++++--.+..+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455556999999999998888877777777766778888776421 233456778777777777777888888877654


Q ss_pred             Cee---------eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEE--EEec--------CCCeEEEE
Q 004885          630 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR  689 (725)
Q Consensus       630 ~~~---------l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~--~~~~--------~~~V~sv~  689 (725)
                      ...         +............++|+|....++++-- -.-+.||.+.... .+.  ....        -..|.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            311         1111122445788999999887775544 4446666554322 111  0000        13477788


Q ss_pred             EecCCCEEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885          690 FQPRLGRILAAA-IENYISILDVETQVCRLKL  720 (725)
Q Consensus       690 fspdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l  720 (725)
                      |++..+.|++-+ .++.|...|+. |.++..+
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            887666555544 45777777765 3334433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.25  E-value=0.57  Score=55.02  Aligned_cols=150  Identities=10%  Similarity=0.069  Sum_probs=82.2

Q ss_pred             EEEEcCCCCEEEEEeCC------CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEC
Q 004885          560 SCHFSPDGKLLATGGHD------KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDT  626 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~D------g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl  626 (725)
                      ++++. ++.+.++||.|      .+|.+||..+.+  .+..+...........+  ++...++|+.||     +|-.||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence            34443 56788899998      356777776543  21112211222222222  577888898886     4778888


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC------cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEE
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg------~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Ll  698 (725)
                      .+...  .................-+..++++|+.++      +|..||..+......-..  ......++.-. +..++
T Consensus       404 ~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~-~~iYv  480 (571)
T KOG4441|consen  404 VTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN-GKIYV  480 (571)
T ss_pred             CCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC-CEEEE
Confidence            77652  222112222233333333355777877544      578899888766544332  22233344433 34555


Q ss_pred             EEEcCC-----eEEEEECCCCe
Q 004885          699 AAAIEN-----YISILDVETQV  715 (725)
Q Consensus       699 a~s~Dg-----~V~IwDl~tg~  715 (725)
                      +|+.|+     +|..||.++.+
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCc
Confidence            666554     47889887753

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.10  E-value=2.6  Score=49.65  Aligned_cols=163  Identities=17%  Similarity=0.200  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEec-cCCC------CeEEEEEcCCCCEEEEEeC-C---CeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE-EHTQ------WITDVRFSPSLSRLATSSA-D---RTV  621 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l~-~H~~------~V~~IafsPd~~~Lasgs~-D---gtI  621 (725)
                      .+.|..|.|.++++.+++...+|.|.+||.......  ..+. .+..      .|......-...++++.+. +   -++
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            567999999999999999999999999999332211  1121 1222      2222221122345544443 2   257


Q ss_pred             EEEECCCCCeeeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------CCeEEEEEe
Q 004885          622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQ  691 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fs  691 (725)
                      +++.+......+..+.   -+........|+-..+.++.-  .+++|.+|++...+...++...       ..+.++.- 
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~-  285 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP-  285 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec-
Confidence            7888822221222222   222233344444333335544  5789999999988877766532       13444432 


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          692 PRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |...+++. +.++.|++.|+.-..++.+++
T Consensus       286 ~s~nRvLL-s~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  286 PSPNRVLL-SVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCCeEEE-EcCCEEEEEeehhhhhhhhhh
Confidence            22234333 456889999987665555443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.01  E-value=1.4  Score=51.27  Aligned_cols=143  Identities=12%  Similarity=0.092  Sum_probs=87.0

Q ss_pred             cEEEEECCCCeEEEEeccCCCCeE---------EEEEcCCCC---EEEEEeCCCeEEEEECCCCCeeeEE--------Ee
Q 004885          578 KAVLWCTESFTVKSTLEEHTQWIT---------DVRFSPSLS---RLATSSADRTVRVWDTENPDYSLRT--------FT  637 (725)
Q Consensus       578 ~V~IWdl~~~~~i~~l~~H~~~V~---------~IafsPd~~---~Lasgs~DgtIrvWDl~~~~~~l~~--------~~  637 (725)
                      +|.-.|+++++....+......+.         -+.+..+++   .++.+..+|.+.+.|-++++. +..        +.
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~  350 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWA  350 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce-eccccccCCcccc
Confidence            677778899998877754222222         222334555   677889999999999998873 311        10


Q ss_pred             ---c-CC-CCe----------------------------EEEEEccCCCeEEEEEeC-----------------------
Q 004885          638 ---G-HS-TTV----------------------------MSLDFHPSKEDLLCSCDN-----------------------  661 (725)
Q Consensus       638 ---~-h~-~~V----------------------------~sl~fsP~g~~llaSgs~-----------------------  661 (725)
                         . .. .++                            ..++++|....+++-...                       
T Consensus       351 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (527)
T TIGR03075       351 TGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGL  430 (527)
T ss_pred             cccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccc
Confidence               0 00 000                            124566655433322111                       


Q ss_pred             ---------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          662 ---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       662 ---------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                               -|.|.-||+.+++.+..+....+...-.+.-.+..++++..||.++++|.+||+.+-.++
T Consensus       431 ~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       431 TIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             ccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                     245778888888888777653322111122244567777779999999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.00  E-value=0.6  Score=54.86  Aligned_cols=144  Identities=14%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCC--eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEECCCCCe
Q 004885          566 DGKLLATGGHDK-----KAVLWCTESF--TVKSTLEEHTQWITDVRFSP-SLSRLATSSADR------TVRVWDTENPDY  631 (725)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~Dg------tIrvWDl~~~~~  631 (725)
                      +|.+.|+||.||     +|-.||..+.  ..+....   .......... ++...++|+.|+      ++..||..+...
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W  456 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW  456 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence            788999999997     4666776542  2222121   1222222222 567777777554      567888877652


Q ss_pred             ee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEECCCCeeEEEEecCCCeEEEEEe-cCCCEEEEEEcC-
Q 004885          632 SL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAAAIE-  703 (725)
Q Consensus       632 ~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg-----~I~IwDl~t~~~v~~~~~~~~V~sv~fs-pdg~~Lla~s~D-  703 (725)
                      .. .....-.... .++.-  +..+++.|+.|+     +|..||..+.+....-....+...+... -++..+++|+.| 
T Consensus       457 ~~~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  457 TLIAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             eecCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence            11 1111111111 12222  245888888776     3788998877665543222222222222 233556666666 


Q ss_pred             ----CeEEEEECCCCe
Q 004885          704 ----NYISILDVETQV  715 (725)
Q Consensus       704 ----g~V~IwDl~tg~  715 (725)
                          ++|..||..+.+
T Consensus       534 ~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  534 NNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccceeEEcCCCCCc
Confidence                468888887763

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.092  Score=63.20  Aligned_cols=97  Identities=21%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeE
Q 004885          566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~  644 (725)
                      -+-+++.|+..|.|-..|.... .....-+.-.++|++++|+-+|.+++.|-.+|.|.+||+.+++ .++.+..|..+++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence            3457888888888888887542 1111112235899999999999999999999999999999977 6777777766655


Q ss_pred             EEEE---ccCCCeEEEEEeCCCc
Q 004885          645 SLDF---HPSKEDLLCSCDNNSE  664 (725)
Q Consensus       645 sl~f---sP~g~~llaSgs~Dg~  664 (725)
                      .+-+   ..++. .+.+++..|.
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs  198 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS  198 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc
Confidence            5443   33333 4556666664

>PHA03098 kelch-like protein; Provisional

Probab=94.90  E-value=0.78  Score=53.31  Aligned_cols=142  Identities=8%  Similarity=0.003  Sum_probs=69.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 004885          566 DGKLLATGGHD-----KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  632 (725)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl~~~~~~  632 (725)
                      ++++++.||.+     ..+.+||..+.+-  +..+....... +++. -++..++.|+.+      ..+.+||..+..- 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW-  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee-
Confidence            67778888765     3577788765331  11111111111 1222 245666666632      3578888876542 


Q ss_pred             eEEEecCC--CCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEE
Q 004885          633 LRTFTGHS--TTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       633 l~~~~~h~--~~V~sl~fsP~g~~llaSgs~D--------g~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~  700 (725)
                       .......  ....+++.. + +.+++.|+.+        ..+.+||..+.+....-.  ......+++.. ++..++.|
T Consensus       419 -~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G  494 (534)
T PHA03098        419 -SKGSPLPISHYGGCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVG  494 (534)
T ss_pred             -eecCCCCccccCceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEc
Confidence             1111100  001122222 3 3466666532        138889998776543321  11111222222 44555666


Q ss_pred             EcC-----CeEEEEECCCC
Q 004885          701 AIE-----NYISILDVETQ  714 (725)
Q Consensus       701 s~D-----g~V~IwDl~tg  714 (725)
                      +.+     +.|.+||.++.
T Consensus       495 G~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcCCcccceeEEEeCCCC
Confidence            543     47899999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.074  Score=63.96  Aligned_cols=101  Identities=12%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C---C
Q 004885          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q---S  683 (725)
Q Consensus       608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~---~  683 (725)
                      -+..++.|+..|.|-..|+...-.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+.+++.++.+.. .   .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3456788888888888887764322222223457899999999988 777888899999999999988887764 2   3


Q ss_pred             CeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          684 GATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      +|.-+.|..++..++++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            3444555556555666655665  4543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.73  E-value=0.36  Score=54.35  Aligned_cols=110  Identities=12%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCE-------EEEEeCCCcEEEEECCC-Ce-EEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          558 VESCHFSPDGKL-------LATGGHDKKAVLWCTES-FT-VKSTLEEHT----QWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       558 V~~i~fSpdg~~-------LaSgs~Dg~V~IWdl~~-~~-~i~~l~~H~----~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      |+-+.+.|+.+.       -+.|-.|..|+-||.+- +. .+....+|.    ....|++-..+ -+|++|+.+|.||+|
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLY  456 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEee
Confidence            666666665442       23556688899999763 22 232333332    33455555544 589999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      |-- +......+.+...+|..|..+.+|+++|+||  +..+.+.|+.
T Consensus       457 dri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  457 DRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             hhh-hhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            983 3335567788889999999999999998887  4677777764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.69  E-value=2.8  Score=44.45  Aligned_cols=149  Identities=12%  Similarity=0.203  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-------e--ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-------L--EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~-------l--~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~  627 (725)
                      -..|.|..++.++++--.+..++++.++....+..       +  ..+ ......++|+|....|+.+-.-.-++||.+.
T Consensus       131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            34577777777888888888898888765432211       1  112 5568899999988888888777666666554


Q ss_pred             CCC--eeeEEEecCC-------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeEEE
Q 004885          628 NPD--YSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQM  688 (725)
Q Consensus       628 ~~~--~~l~~~~~h~-------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~V~sv  688 (725)
                      ...  ..+.....+.       ..|.++.|++..+.+++-+.+++.|-..|.. |..+..+....          ....|
T Consensus       211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGi  289 (316)
T COG3204         211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGI  289 (316)
T ss_pred             cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCccee
Confidence            322  1111111111       3478889998888899999888888888877 44444443211          13556


Q ss_pred             EEecCCCEEEEEEcCCeEEE
Q 004885          689 RFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       689 ~fspdg~~Lla~s~Dg~V~I  708 (725)
                      +..++|. |+.++.-+-.+.
T Consensus       290 amDd~g~-lYIvSEPnlfy~  308 (316)
T COG3204         290 AMDDDGN-LYIVSEPNLFYR  308 (316)
T ss_pred             EECCCCC-EEEEecCCccee
Confidence            7776644 444454443333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.68  E-value=2.9  Score=43.93  Aligned_cols=120  Identities=12%  Similarity=-0.005  Sum_probs=80.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885          598 QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (725)
Q Consensus       598 ~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~  675 (725)
                      ...-.+.|..++.++-+.+.-|  .|+.+|+.+++..........-.-..++...+  .++...=.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceE
Confidence            3345777866777777777655  79999999988333333333333445555533  4555556789999999999999


Q ss_pred             EEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       676 v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.++...+.-..++  .|+..|+.+.....|+++|.++.+.++++.
T Consensus       123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence            99998877777777  456788888778899999999887777665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.57  E-value=3.9  Score=45.81  Aligned_cols=153  Identities=18%  Similarity=0.235  Sum_probs=81.0

Q ss_pred             EEEcCCCCEEEEEe--C----CCcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEEEEEeC--------------
Q 004885          561 CHFSPDGKLLATGG--H----DKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSA--------------  617 (725)
Q Consensus       561 i~fSpdg~~LaSgs--~----Dg~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~Lasgs~--------------  617 (725)
                      +..-|+|.+++++-  .    -|-+.++|-++.+.+..++...   ..-+++-|.|..+.++|+..              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            44456888877752  2    2468888988888887776432   34578888998888888754              


Q ss_pred             ------CCeEEEEECCCCCeeeEEEecC-CC-CeEEEEEc--cCCCeEEEEEeCCCcEEEEEC-CCCee----EEEEec-
Q 004885          618 ------DRTVRVWDTENPDYSLRTFTGH-ST-TVMSLDFH--PSKEDLLCSCDNNSEIRYWSI-NNGSC----AGVFKC-  681 (725)
Q Consensus       618 ------DgtIrvWDl~~~~~~l~~~~~h-~~-~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl-~t~~~----v~~~~~-  681 (725)
                            ..++.+||+.+.+ .+.++.-- .+ .+..|.|.  |+..+=|+.|.-...|..|-- +.++.    +..+.. 
T Consensus       215 ~~~~~yG~~l~vWD~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             HHHH-S--EEEEEETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             hhcccccCeEEEEECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                  3589999999987 56665432 22 35567765  555655666655555555533 44432    222211 


Q ss_pred             -----------------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885          682 -----------------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       682 -----------------~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                                       ..-|+.|..+.|.++|.++.. +|.|+.||+..-
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                             123799999999999988887 899999999763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.56  E-value=1.3  Score=48.20  Aligned_cols=136  Identities=7%  Similarity=0.060  Sum_probs=88.9

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeEEEe-cC--C---
Q 004885          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT-GH--S---  640 (725)
Q Consensus       577 g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~----------DgtIrvWDl~~~~~~l~~~~-~h--~---  640 (725)
                      +.|+|+|.++++.+..+..  +..-.+.++|+++.+++++.          .-.|.+||..+-. +...+. ..  .   
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchhee
Confidence            4799999999998877753  34455778999998887542          3469999999876 333221 11  1   


Q ss_pred             -CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CCeEE
Q 004885          641 -TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCR  717 (725)
Q Consensus       641 -~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v  717 (725)
                       .....+.++.+++++++.-- =.-.|.|.|+..++.+.++...+.+.-.-+.+  ..+.+.|.||.+..+.+. .|+..
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEe
Confidence             12234577888887665432 23469999999999998887644333333333  357778889998888887 45544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.54  E-value=0.12  Score=52.50  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=68.1

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f-Spdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      .-+.+|+.|+.|.+|.+.-.....+++..                  -...|.|+.- -.++.+..+++.|+.|+.|++.
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~  132 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK  132 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhc------------------ccccceeccccccccceeEEeccCCceeeeccc
Confidence            46788999999999976533222211111                  1112333322 2255688899999999999999


Q ss_pred             CCeEEEEeccCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 004885          586 SFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN  628 (725)
Q Consensus       586 ~~~~i~~l~~H~-~~V~~IafsPd~~~Lasg--s~DgtIrvWDl~~  628 (725)
                      ..+.+...-.|. .++........++.|+.+  +.|..++.|++..
T Consensus       133 p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  133 PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            888887777777 555555555556666666  6677777777754

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.50  E-value=0.95  Score=53.19  Aligned_cols=111  Identities=10%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECC----
Q 004885          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSIN----  671 (725)
Q Consensus       598 ~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~----  671 (725)
                      ..+.-+.-+.-++..++-+...++.|||.+.+...........+.|.+++|.  |++..+++.|- .+.|.+|.-.    
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDY  108 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhh
Confidence            3444455555445445545566899999988763222222456789999986  67776665554 6778887431    


Q ss_pred             -----CCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          672 -----NGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       672 -----t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                           ....+..+..    ..+|.+.+|.++|..++ | .++.+.|+|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~-sGNqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-G-SGNQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-E-eCCEEEEECC
Confidence                 1234444432    46799999999964443 3 3567888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.37  E-value=6.7  Score=42.29  Aligned_cols=110  Identities=16%  Similarity=0.200  Sum_probs=58.9

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-C
Q 004885          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N  672 (725)
Q Consensus       594 ~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t  672 (725)
                      .+-.+.+..+...+++++++++.....+.-||--...- ..........|.++.|.|++. +.+.+ ..|.|++=+.. .
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCC
Confidence            34457789999999999999998777778888764331 222233457899999999987 43333 67888888722 2


Q ss_pred             CeeEEE--Ee--c-CCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885          673 GSCAGV--FK--C-QSGATQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       673 ~~~v~~--~~--~-~~~V~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      .+.-..  ..  . .-.+..++|.+++...+ ++..|.|.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~  256 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL  256 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE
Confidence            211111  11  1 33489999998855544 55555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.30  E-value=1.2  Score=49.09  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCEE-EEEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          558 VESCHFSPDGKLL-ATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       558 V~~i~fSpdg~~L-aSgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      -+.=+|.+||+.| +++..|+  .+++.|+.+++....-.+-........++|+++.++-...+..|+..|+++.+ ...
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~  116 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERV  116 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEE
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEE
Confidence            3344677888754 5555565  56666888877664333222223356678888887766667789999999987 334


Q ss_pred             EEecCCCCeEEEEEc--cCCCeEEEEEe---C-------------------CCcEEEEECCCCeeEEEEecCCCeEEEEE
Q 004885          635 TFTGHSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRF  690 (725)
Q Consensus       635 ~~~~h~~~V~sl~fs--P~g~~llaSgs---~-------------------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~f  690 (725)
                      .+......+-...|.  .++. .++.+-   .                   ...|.-.|+.+|+....+.....+..+-|
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF  195 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred             EEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence            444455555445554  3344 332221   0                   22567778899988888887888999999


Q ss_pred             ecCCCEEEEEEc
Q 004885          691 QPRLGRILAAAI  702 (725)
Q Consensus       691 spdg~~Lla~s~  702 (725)
                      +|....+++=+.
T Consensus       196 sP~dp~li~fCH  207 (386)
T PF14583_consen  196 SPTDPTLIMFCH  207 (386)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             CCCCCCEEEEec
Confidence            998776666544

>PRK10115 protease 2; Provisional

Probab=94.17  E-value=3.3  Score=49.91  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 004885          558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT  626 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl  626 (725)
                      +..+.|+||+++|+.+..     ...|++.|+.++..+.......  -..++|.+|++.|+....+      ..|.+|++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            677889999998876532     2368889998776432221111  1468999998876655432      36788888


Q ss_pred             CCCCe-eeEEEecCCCCeE-EEEEccCCCeEEEEEe--CCCcEEEEEC
Q 004885          627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI  670 (725)
Q Consensus       627 ~~~~~-~l~~~~~h~~~V~-sl~fsP~g~~llaSgs--~Dg~I~IwDl  670 (725)
                      .++.. ....+........ .+..+.++.++++.+.  .++.+.+|+.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            87721 2333443333333 3333447776665544  3457889985

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.07  E-value=0.059  Score=63.55  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE-----------EcCCCCEEEEEeCCCeE
Q 004885          556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTV  621 (725)
Q Consensus       556 ~~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia-----------fsPd~~~Lasgs~DgtI  621 (725)
                      ..+.-|.|+|   +.-++.++..++.|++.+++.... ..+.+|..++++++           .+|||+.|++.+.||.+
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            3344455544   556777788888998887754322 34556776666544           57899999999999998


Q ss_pred             EEEECCCCC----eeeEEEecCCC-CeEEEEEccC-------CCe--EEEEEeCCCcEEEEECCCCeeE
Q 004885          622 RVWDTENPD----YSLRTFTGHST-TVMSLDFHPS-------KED--LLCSCDNNSEIRYWSINNGSCA  676 (725)
Q Consensus       622 rvWDl~~~~----~~l~~~~~h~~-~V~sl~fsP~-------g~~--llaSgs~Dg~I~IwDl~t~~~v  676 (725)
                      +.|.+.-..    .|+...+.|.+ +-.|.-|+..       +.+  ++-+.+.+..+++|.....+|+
T Consensus       260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            888764211    25566666663 2222223221       112  2223345567999988877777

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.06  E-value=0.25  Score=59.98  Aligned_cols=114  Identities=11%  Similarity=0.001  Sum_probs=77.4

Q ss_pred             CCeEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCeee----EEEe------cCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          598 QWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       598 ~~V~~IafsPd~~~L--asgs~DgtIrvWDl~~~~~~l----~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                      .+|..+...+|....  +..+.+..|.+||+++-....    ..+.      .....+.++.|.|.-....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            445556666675543  333445688999997543111    1111      1224467888999866667778889999


Q ss_pred             EEEECCCCe-eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          666 RYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       666 ~IwDl~t~~-~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      +|..+.... .+..+.....+++++|+|.|..+++|-..|++.-|..
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            998876432 2334455677999999999999999999999988864

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.96  E-value=0.15  Score=39.00  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...|.+++|+|...+||.+..||.|.||.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456999999999999999999999999998

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.94  E-value=8.2  Score=40.42  Aligned_cols=115  Identities=15%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE-EEe--ccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVK-STL--EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENP  629 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWd-l~~~~~i-~~l--~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~~  629 (725)
                      .++.-.|++++...+....+..++++. ..++... ..+  ..-...|..++++|||.+++...   .++.|.|--+...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            577889999988777776666667763 2332221 111  11122899999999999887665   3566666654321


Q ss_pred             C--------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE-EECC
Q 004885          630 D--------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSIN  671 (725)
Q Consensus       630 ~--------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I-wDl~  671 (725)
                      .        ..+.........+.+++|.+++..+++....++.+.. +.+.
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d  197 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD  197 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence            1        0122222334678999999998744444444444444 4443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.88  E-value=6.5  Score=48.00  Aligned_cols=157  Identities=18%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEEc---C--C--CCEEEEEeCCCcEEEEEC------CC---------CeEEEEeccC---CCCeEEEEEcC
Q 004885          553 ASTSKVESCHFS---P--D--GKLLATGGHDKKAVLWCT------ES---------FTVKSTLEEH---TQWITDVRFSP  607 (725)
Q Consensus       553 ~H~~~V~~i~fS---p--d--g~~LaSgs~Dg~V~IWdl------~~---------~~~i~~l~~H---~~~V~~IafsP  607 (725)
                      ....+|..|+|.   .  +  .++|++- ....+.|+..      ..         ..++..+..+   ..+..+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456778889987   2  2  2355554 4556777661      11         1233344322   34678999999


Q ss_pred             -CCCEEEEEeCCCeEEEEECCC----CCeeeEEEecCC----------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885          608 -SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       608 -d~~~Lasgs~DgtIrvWDl~~----~~~~l~~~~~h~----------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                       +...||+.+..|...|||+..    ....+.....+.          .....|.|.++...+| .|+ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence             567899999999999999921    111111111111          2345788988877555 454 46799999998


Q ss_pred             CeeEE---EEecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 004885          673 GSCAG---VFKCQSGATQMRFQPRLG-RILAAAIENYISILDVET  713 (725)
Q Consensus       673 ~~~v~---~~~~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~t  713 (725)
                      .....   ..+....|..+.-+++.. ++++- ....|..+|+.+
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            75533   222245688888777632 22222 225677777766

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=93.81  E-value=2.5  Score=48.56  Aligned_cols=141  Identities=9%  Similarity=0.070  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeE-EEe
Q 004885          566 DGKLLATGGHD--KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLR-TFT  637 (725)
Q Consensus       566 dg~~LaSgs~D--g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg---tIrvWDl~~~~~~l~-~~~  637 (725)
                      ++++.++||.+  ..|..||..+.+  .+..+.........+.+  ++...+.|+.++   .+..||.++..-... ...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            67777888764  357788865432  22122211111112222  566667776543   467788876542110 000


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcC-----CeEEEEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIE-----NYISILD  710 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~D-----g~V~IwD  710 (725)
                      ........+.+  + +.+++.|   |.+.+||.++.+....-.  ....-.+++.. ++..+++||.+     ..|.+||
T Consensus       396 ~~r~~~~~~~~--~-~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKSCALVF--G-RRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CccccceEEEE--C-CEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEE
Confidence            01111112222  2 3466666   457789988776553322  11122233333 44566666643     4688999


Q ss_pred             CCCCe
Q 004885          711 VETQV  715 (725)
Q Consensus       711 l~tg~  715 (725)
                      .++++
T Consensus       469 ~~~~~  473 (480)
T PHA02790        469 NRTYS  473 (480)
T ss_pred             CCCCe
Confidence            88764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.64  E-value=10  Score=40.43  Aligned_cols=149  Identities=9%  Similarity=0.063  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      +.+.++.|+  +++...+..+.-++|+|+.+...-   ..+. ..+--+++..  .|++..++..|.-+-+.|+.++..+
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            456778885  577888888888999999874432   2222 1233344444  5889999987777889999887754


Q ss_pred             eE--EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe---eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885          633 LR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       633 l~--~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~---~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      ..  .+.......+.++.+  |++-+ .+..|+-+.|.|+.+..   .+........+.++..+++.-++  +..+..|.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~--vvy~egvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYL--VVYDEGVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEE--EEcccceE
Confidence            33  233333444667776  34344 44457889999998643   33444445578888888873333  33333455


Q ss_pred             EEECCCC
Q 004885          708 ILDVETQ  714 (725)
Q Consensus       708 IwDl~tg  714 (725)
                      +-|..+.
T Consensus       237 ivd~s~~  243 (370)
T COG5276         237 IVDVSGP  243 (370)
T ss_pred             EEecCCC
Confidence            6665544

>PRK13684 Ycf48-like protein; Provisional

Probab=93.63  E-value=2.9  Score=45.74  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=88.9

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~I-Wdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      +.++..+..  .-.+.+.++.+.+++.+++++. .|.+.. +|- .++.-. ....-...++++.+.++++.++++ ..|
T Consensus       161 G~tW~~~~~--~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G  235 (334)
T PRK13684        161 GKNWEALVE--DAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGG  235 (334)
T ss_pred             CCCceeCcC--CCcceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCC
Confidence            444544332  2245689999999887766654 565543 222 222111 122335678999999998877665 456


Q ss_pred             eEEEEECCCCCeeeEEEec----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---c-CCCeEEEEEe
Q 004885          620 TVRVWDTENPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C-QSGATQMRFQ  691 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~---~-~~~V~sv~fs  691 (725)
                      .+++=..+.+. .......    ....+.++.|.+++. ++++ +.+|.|. .....++.-....   . ....+.+.|.
T Consensus       236 ~~~~~s~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~  311 (334)
T PRK13684        236 QIRFNDPDDLE-SWSKPIIPEITNGYGYLDLAYRTPGE-IWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL  311 (334)
T ss_pred             EEEEccCCCCC-ccccccCCccccccceeeEEEcCCCC-EEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence            66432333332 1111111    123578899999876 5544 4466554 4445444332222   1 2357778887


Q ss_pred             cCCCEEEEEEcCCeEEEEE
Q 004885          692 PRLGRILAAAIENYISILD  710 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwD  710 (725)
                      .++ ..++++..|.|-.|+
T Consensus       312 ~~~-~~~~~G~~G~il~~~  329 (334)
T PRK13684        312 DPE-KGFVLGQRGVLLRYV  329 (334)
T ss_pred             CCC-ceEEECCCceEEEec
Confidence            664 456677778887775

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.51  E-value=13  Score=39.98  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=48.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC------C-eEEEEecc-----CCCCeEEEEEcCCCC------------EEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTES------F-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA  613 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~------~-~~i~~l~~-----H~~~V~~IafsPd~~------------~La  613 (725)
                      -..|+|+|.+.+.++...-++..+||...      . ..+.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            35799999998888888888999999861      1 22333331     134577777775332            367


Q ss_pred             EEeCCCeEEEEEC
Q 004885          614 TSSADRTVRVWDT  626 (725)
Q Consensus       614 sgs~DgtIrvWDl  626 (725)
                      .++.||+|.-|..
T Consensus       105 f~tEdGTisaW~p  117 (336)
T TIGR03118       105 FVTEDGTLSGWAP  117 (336)
T ss_pred             EEeCCceEEeecC
Confidence            7889999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.44  E-value=3.5  Score=42.35  Aligned_cols=121  Identities=10%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          597 TQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~----------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      ....++-..+|+|+++ .|..          .|.++.|-....   +..+...-.--+.++|+.+.+.++++-+.+-+|.
T Consensus       108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            3456677789999984 3332          244555554321   2333333344577899988888888888888887


Q ss_pred             EEE--CCCCe-----eEEEEec-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          667 YWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       667 IwD--l~t~~-----~v~~~~~-----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      -||  ..+|.     .+..++.     +-..-.++...+|..++++-..++|..+|..+|+.+.+++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence            787  44443     3333332     1123445667788888888888999999999999998875

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.34  E-value=11  Score=45.83  Aligned_cols=153  Identities=15%  Similarity=0.162  Sum_probs=93.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC--------CeEEEEEcC----------------CCCEEEEEeCCCeEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------WITDVRFSP----------------SLSRLATSSADRTVR  622 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~--------~V~~IafsP----------------d~~~Lasgs~DgtIr  622 (725)
                      +..|+.|+.++.|+-.|..+++.+..+.....        .+..+.+..                .+.+|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45677778888999999999998887753221        122233321                345888899999999


Q ss_pred             EEECCCCCeeeEEEecCCCCeE-------------EEEEcc--CCCeEEEEEeC----------CCcEEEEECCCCeeEE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG  677 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~-------------sl~fsP--~g~~llaSgs~----------Dg~I~IwDl~t~~~v~  677 (725)
                      -.|.++++. +..|. ..+.|.             .+.-.|  .+..++ .++.          +|.|+-+|+++|+.+.
T Consensus       274 ALDA~TGk~-~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKL-CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCE-EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999984 33332 111110             011111  123233 4432          5889999999999988


Q ss_pred             EEecC----------C--------C-eEEEEEecCCCEEEEEEc------------------CCeEEEEECCCCeEEEEE
Q 004885          678 VFKCQ----------S--------G-ATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLKL  720 (725)
Q Consensus       678 ~~~~~----------~--------~-V~sv~fspdg~~Lla~s~------------------Dg~V~IwDl~tg~~v~~l  720 (725)
                      .+...          +        . ...+++++..+.++....                  .+.|.-.|++||+.+-.+
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence            77531          0        0 133455665555444221                  256888899999888777


Q ss_pred             eC
Q 004885          721 QV  722 (725)
Q Consensus       721 ~G  722 (725)
                      +-
T Consensus       431 Q~  432 (764)
T TIGR03074       431 QT  432 (764)
T ss_pred             cc
Confidence            64

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.27  E-value=6.6  Score=47.72  Aligned_cols=149  Identities=13%  Similarity=0.112  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeee
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~--~~~~l  633 (725)
                      +.|.++..- +|++||.-  ...|++|++.+.+.++.-..|..++..+...-.++.+++|.--++|.+.-.+.  +....
T Consensus       830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            445554432 57766654  56899999988888887788899999999999999999999888776655443  33333


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-------------------CeeEEEEecCCCeEEE--EEec
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------------------GSCAGVFKCQSGATQM--RFQP  692 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-------------------~~~v~~~~~~~~V~sv--~fsp  692 (725)
                      ..-..+..+++++.+-.+..  ++.+..+|.+.+.-.++                   |+.+..|.+..-|.++  ...|
T Consensus       907 vArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~  984 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP  984 (1096)
T ss_pred             eehhhCccceeeEEEecCce--EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC
Confidence            33345667788888766543  33455567776664432                   1223333332223331  2244


Q ss_pred             CCCEEEEEEcCCeEEEE
Q 004885          693 RLGRILAAAIENYISIL  709 (725)
Q Consensus       693 dg~~Lla~s~Dg~V~Iw  709 (725)
                      -+..++.|..+|.|-+.
T Consensus       985 ~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  985 LEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             CCCcEEEEEccceEEEE
Confidence            45568888888887654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.16  E-value=2.3  Score=48.01  Aligned_cols=143  Identities=15%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          566 DGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       566 dg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-------~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      |..+|+ .|+...+++-.|++-|+.+..+.-|...  -|.|.|..+       .-++|-.+..|.-.|.+-....+... 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence            555544 5666778999999999999999877654  567777432       23455556666666766443222221 


Q ss_pred             cCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          638 GHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       638 ~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .....++.-.|+.-   ..-+++.++..|.|++||--.-.....+.. ...|..|....+|.++++. +...|.+.|++
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT-Ck~yllL~d~~  632 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT-CKNYLLLTDVP  632 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe-ecceEEEEecc
Confidence            11122333333321   122677889999999999654333333443 5779999999998887654 45778888875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.11  E-value=2.8  Score=44.20  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 004885          558 VESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTEN  628 (725)
Q Consensus       558 V~~i~fSpdg~-~LaSgs~Dg~-V~IWdl~~~~~i~~l~~H~~~--V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~  628 (725)
                      ...|+|+|... -++.+-.-|+ ..++|........++...++.  .-.=.|+||+.+|+..-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            34577888443 4555655554 467888776544443221111  1122599999999877554     6899999997


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEe------C-----------CCcEEEEECCCCeeEEEEec-----CCCeE
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKC-----QSGAT  686 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs------~-----------Dg~I~IwDl~t~~~v~~~~~-----~~~V~  686 (725)
                      +-..+..+..|.-.-..+.|.+||+.++++.+      .           .-++.+.|..+|..+.+...     .-.|.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence            76677888888888899999999996655433      0           01233444445555544332     34577


Q ss_pred             EEEEecCCCEEEEE
Q 004885          687 QMRFQPRLGRILAA  700 (725)
Q Consensus       687 sv~fspdg~~Lla~  700 (725)
                      .++..+||..++.+
T Consensus       230 Hld~g~dgtvwfgc  243 (366)
T COG3490         230 HLDIGRDGTVWFGC  243 (366)
T ss_pred             eeeeCCCCcEEEEE
Confidence            78888886555444

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.10  E-value=6.5  Score=43.62  Aligned_cols=144  Identities=14%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC----CCCE--EEEEe-CC---CeEEEEECCCCCeeeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSS-AD---RTVRVWDTENPDYSLRT  635 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP----d~~~--Lasgs-~D---gtIrvWDl~~~~~~l~~  635 (725)
                      ...+|+....++-+.+||+.. +.+..+.  .+.++.|+...    +++.  |+.++ .+   .+|++|.+......+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            445777778888999999864 4555553  23444444322    3332  34443 32   47999987642223433


Q ss_pred             Eec-------CCCCeEEEEEc--c-CCCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeEEEEEecCCCEEE
Q 004885          636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL  698 (725)
Q Consensus       636 ~~~-------h~~~V~sl~fs--P-~g~~llaSgs~Dg~I~IwDl~---t~----~~v~~~~~~~~V~sv~fspdg~~Ll  698 (725)
                      +..       ....++.+|+-  + +|..+++....+|.+.-|-+.   .+    +.++.|.....+..|..+...++|+
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence            321       12346777763  3 456566677788988877664   33    5688888878899999999999999


Q ss_pred             EEEcCCeEEEEECC
Q 004885          699 AAAIENYISILDVE  712 (725)
Q Consensus       699 a~s~Dg~V~IwDl~  712 (725)
                      ++-.+.-|.-|+++
T Consensus       224 vgEE~~GIW~y~Ae  237 (381)
T PF02333_consen  224 VGEEDVGIWRYDAE  237 (381)
T ss_dssp             EEETTTEEEEEESS
T ss_pred             EecCccEEEEEecC
Confidence            99999889999886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.98  E-value=3.1  Score=42.32  Aligned_cols=139  Identities=16%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             CEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE---ECC-CCCeeeE-
Q 004885          568 KLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW---DTE-NPDYSLR-  634 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D---g---tIrvW---Dl~-~~~~~l~-  634 (725)
                      +.|+.+...++|.+|++..  ...+..|.. -+.|..+.++..|++|+|--.+   .   .+|+|   +.. ....++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4444445567899999873  445566654 4789999999999999997432   2   56664   222 1111111 


Q ss_pred             EEec---------------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-E-----EEEe-----c-
Q 004885          635 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-A-----GVFK-----C-  681 (725)
Q Consensus       635 ~~~~---------------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v-----~~~~-----~-  681 (725)
                      .+.|                     -...+.+++-.|...++++.+  ++.+.+|.+..... .     ..|.     + 
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence            1112                     234577888888766677554  46888998764333 1     1121     1 


Q ss_pred             -CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          682 -QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       682 -~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                       .-.+..+++..+   +++..++..++|+.+.
T Consensus       186 ~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  186 DNFKPTQVAICEG---YIAVMSDLEVLVLKLE  214 (215)
T ss_pred             cCceEEEEEEEee---EEEEecCCEEEEEEEe
Confidence             222566777643   4555667778887654

>PHA02713 hypothetical protein; Provisional

Probab=92.80  E-value=1.8  Score=50.72  Aligned_cols=140  Identities=8%  Similarity=0.052  Sum_probs=69.9

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCee
Q 004885          566 DGKLLATGGHD------KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS  632 (725)
Q Consensus       566 dg~~LaSgs~D------g~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl~~~~~~  632 (725)
                      +++++++||.+      ..|..||..+..-  +..+.........+.+  +++..+.|+.++     ++.+||..+..- 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W-  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW-  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE-
Confidence            67777777754      3477888765432  1111111111222222  566677777653     478899886541 


Q ss_pred             eEEEec---CCCCeEEEEEccCCCeEEEEEeCCC-----------------------cEEEEECCCCeeEEEEec--CCC
Q 004885          633 LRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS-----------------------EIRYWSINNGSCAGVFKC--QSG  684 (725)
Q Consensus       633 l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg-----------------------~I~IwDl~t~~~v~~~~~--~~~  684 (725)
                       .....   .......+.+  + +.+++.|+.++                       .|..||..+.+....-..  ...
T Consensus       380 -~~~~~mp~~r~~~~~~~~--~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~  455 (557)
T PHA02713        380 -KMLPDMPIALSSYGMCVL--D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI  455 (557)
T ss_pred             -EECCCCCcccccccEEEE--C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence             11111   1111112222  3 44777776542                       477788877655432221  111


Q ss_pred             eEEEEEecCCCEEEEEEcC------CeEEEEECCC
Q 004885          685 ATQMRFQPRLGRILAAAIE------NYISILDVET  713 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~D------g~V~IwDl~t  713 (725)
                      -.+++. -++..+++|+.+      ..|..||.++
T Consensus       456 ~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        456 RPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            122332 234555556543      2477899886

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.70  E-value=3.3  Score=46.38  Aligned_cols=146  Identities=10%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeccCC--CCeEEEEEcC--CCCEE
Q 004885          557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSP--SLSRL  612 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~--------------------Dg~V~IWdl~~~~~i~~l~~H~--~~V~~IafsP--d~~~L  612 (725)
                      .-+++-|.|..+.++|...                    ..++.+||+.+.+.+.++.--.  ..+..|+|..  +..+-
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            3467778887777777642                    4589999999999998875322  3456777754  44443


Q ss_pred             EE-EeCCCeEEEEEC-CCCCe---eeEEEec-----------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 004885          613 AT-SSADRTVRVWDT-ENPDY---SLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       613 as-gs~DgtIrvWDl-~~~~~---~l~~~~~-----------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl  670 (725)
                      ++ +.-..+|..|-- +.+..   .+..+..                 -..-|+.|.++.|.++|++++=.+|.||.||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            33 334555554433 33221   1111111                 12457999999999999999999999999999


Q ss_pred             CCC---eeEEEEec-----------------CCCeEEEEEecCCCEEEEEEc
Q 004885          671 NNG---SCAGVFKC-----------------QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       671 ~t~---~~v~~~~~-----------------~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ...   +.+..+..                 .++..-|..|-||++|+++.+
T Consensus       342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            753   33333321                 123466888999999888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.19  E-value=1.1  Score=50.31  Aligned_cols=86  Identities=12%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C-CCeEEEEE-ecC---------------CCEE
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGATQMRF-QPR---------------LGRI  697 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~-~~V~sv~f-spd---------------g~~L  697 (725)
                      +......+.+|+.+|++. +.++.+.-|.|.++|+.++..++.+++ . ..+.=+.. ...               ...+
T Consensus       303 l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            334445689999999977 677777789999999999999988886 1 11111111 111               1122


Q ss_pred             E--EEEcCCeEEEEECCCCeEEEEEeC
Q 004885          698 L--AAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       698 l--a~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +  -+-.-|.|.||++++|..+..+.-
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            2  334479999999999999988763

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.18  E-value=4.2  Score=48.49  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=75.0

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C----e---------EEEEeccCCCCeEEEEEc--CCCCEEE
Q 004885          558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRLA  613 (725)
Q Consensus       558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~-------~----~---------~i~~l~~H~~~V~~Iafs--Pd~~~La  613 (725)
                      |+-|....  +...|+.|..||.|.+|.+++       .    .         +...+. -...+++++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            56555544  455899999999999997631       0    0         111222 24578999998  7788899


Q ss_pred             EEeCCCeEEEEECCCC--CeeeEEEecCCCCeEEEEEccCC-----CeEEEEEeCCCcEEEEEC
Q 004885          614 TSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       614 sgs~DgtIrvWDl~~~--~~~l~~~~~h~~~V~sl~fsP~g-----~~llaSgs~Dg~I~IwDl  670 (725)
                      +++....|.||-....  ......-..|...|.+|+|-++.     ...+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9988888888755432  11111122355678999998764     236778888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.13  E-value=0.44  Score=36.49  Aligned_cols=35  Identities=11%  Similarity=0.110  Sum_probs=30.3

Q ss_pred             CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      ...|..++|+|....|+.+..||.|.||.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            467999999999999999999999999999 55443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.93  E-value=9.7  Score=46.54  Aligned_cols=125  Identities=10%  Similarity=0.084  Sum_probs=79.6

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCC----------CeEEEEEcCCCCEEEEEeCC
Q 004885          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       555 ~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~-----~~i~~l~~H~~----------~V~~IafsPd~~~Lasgs~D  618 (725)
                      .....+++|+| +.+.||+....|...||++...     ..+.....+.+          .-..|.|.++...|++++ .
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence            34678999999 5568999999999999999211     11111111222          234788988888888876 4


Q ss_pred             CeEEEEECCCCCeee-EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC----eeEEEEec
Q 004885          619 RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKC  681 (725)
Q Consensus       619 gtIrvWDl~~~~~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~----~~v~~~~~  681 (725)
                      ..+.++|+++..... .........|.++.-+|.....++... ..+|...|+...    +.+..++|
T Consensus       224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH  290 (765)
T PF10214_consen  224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKH  290 (765)
T ss_pred             CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeeccc
Confidence            568899999876311 222234467888888887333333333 367878888762    44555555

These proteins are found in fungi.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.90  E-value=3.8  Score=45.71  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i----~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      ..++|.+|.||+|.+.||+--.|++|.+++....+..    .+.+..+..|....|+.+ +-++..+..| +.+|.+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            3468999999999999999999999999998433221    122333456889999866 4555555444 677777665


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCe
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS  674 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~  674 (725)
                      ...++..+.|.-.|.-..|+++.+.++.+.+ ..+++.=+-++++.
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            5567778888888988999998775443333 34445445555443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.64  E-value=9.8  Score=42.93  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=90.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe--EEEEe--ccCCCCeEEEEEc---CC-CCEEEEEeCCCeEEEEECCCCC--------
Q 004885          567 GKLLATGGHDKKAVLWCTESFT--VKSTL--EEHTQWITDVRFS---PS-LSRLATSSADRTVRVWDTENPD--------  630 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~--~i~~l--~~H~~~V~~Iafs---Pd-~~~Lasgs~DgtIrvWDl~~~~--------  630 (725)
                      ...|++||.+|.++||+.....  ....+  ..-..+|..|..-   +. ....+..-.-..+.||.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            3589999999999999975422  11111  1235677777653   22 2223333556778888873221        


Q ss_pred             eeeEEEecCC--CCeEEEEEcc----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          631 YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       631 ~~l~~~~~h~--~~V~sl~fsP----~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      ..+.....|.  .....+++-|    .++.++|.=+.||.+.+|+-+.....+.+...--...++|++....+++++++.
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~  196 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW  196 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence            2233333343  2334444433    335788899999999999987655444444333345677888888899998888


Q ss_pred             eEEEEEC
Q 004885          705 YISILDV  711 (725)
Q Consensus       705 ~V~IwDl  711 (725)
                      .|..|..
T Consensus       197 ~l~~Yky  203 (418)
T PF14727_consen  197 TLECYKY  203 (418)
T ss_pred             eEEEecH
Confidence            8888864

>PRK13684 Ycf48-like protein; Provisional

Probab=91.63  E-value=11  Score=41.17  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVR-VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIr-vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~  675 (725)
                      ...+.++.+.|++.+++++. .|.+. .+|-. +..-..........++++.+.+++. +++.+ ..|.+++-..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            45789999999887776664 44333 22222 1111122223346789999999987 44444 457664333444432


Q ss_pred             EEEEe-----cCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885          676 AGVFK-----CQSGATQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       676 v~~~~-----~~~~V~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      -....     ....+..+.|.+++. +++++.+|.|.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~  283 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL  283 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence            22111     124578899998755 55566666554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.60  E-value=8.3  Score=41.64  Aligned_cols=108  Identities=8%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeE---EEEeccCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCCC
Q 004885          566 DGKLLATGGHDK-----KAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD  630 (725)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWdl~~~~~---i~~l~~H~~~V--~~IafsPd~~~Lasgs~-----DgtIrvWDl~~~~  630 (725)
                      ++++++.|+.++     .|..||+.+.+-   ...+..-..+.  .+++.. ++.+.+.|+.     ...+.+||+.+..
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            566777777643     566677765442   11221111111  122222 4555566654     2357788887655


Q ss_pred             eee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeE
Q 004885          631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA  676 (725)
Q Consensus       631 ~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v  676 (725)
                      -.. ..+... ......+..-+ ..+++.|+.++    .+.+||+.+.+..
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence            211 111111 11111211223 34777777553    3568898876654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.53  E-value=6.8  Score=36.96  Aligned_cols=118  Identities=11%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCe-------eeEEEecCCCCeEEEEEcc----CCCeEEEEEeCCCcEEEEECC
Q 004885          603 VRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       603 IafsPd~~~Lasgs~DgtIrvWDl~~~~~-------~l~~~~~h~~~V~sl~fsP----~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      -.|......|+.++..+.|.|++......       .+..+ .-...|++|+--+    ++..+|+.|+ ...|-.||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            35655566777888888888888764321       22222 2335577775444    2345777777 5578899999


Q ss_pred             CCeeEEEEecCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          672 NGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       672 t~~~v~~~~~~~~V~sv~fspd---g~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +..-+.--+...+|.+|.+-.-   ..-++..+....|.-||.+..+..-+..|
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg  135 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG  135 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
Confidence            8766655555688888877322   23466667777888888876666655443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.52  E-value=2.1  Score=48.05  Aligned_cols=91  Identities=15%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEE-EEE-ccC----------------
Q 004885          590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDF-HPS----------------  651 (725)
Q Consensus       590 i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~s-l~f-sP~----------------  651 (725)
                      ...|......+.+|..+|++.+.++.+.-|.|.++|+.++. .++.++|..+.=.. +.. ...                
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            34555666778999999999999998888999999999877 67777765542111 110 111                


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004885          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC  681 (725)
Q Consensus       652 g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~  681 (725)
                      .-.|++-+-..|.|.||++++|..+..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            123445566788999999999988887765

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.15  E-value=11  Score=42.45  Aligned_cols=31  Identities=13%  Similarity=0.200  Sum_probs=25.5

Q ss_pred             CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          684 GATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      .|.+|++.+..+.+++...++.|.+||+..+
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            3899999998889999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.10  E-value=8.1  Score=42.76  Aligned_cols=98  Identities=10%  Similarity=0.074  Sum_probs=54.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----e--EE-EEecc----CCCCeEEEEEcCCCCEEEEEeCC-----
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----T--VK-STLEE----HTQWITDVRFSPSLSRLATSSAD-----  618 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-----~--~i-~~l~~----H~~~V~~IafsPd~~~Lasgs~D-----  618 (725)
                      ...+.++|.+++ +++ ++.+..+++.|.+..     +  .+ ..+..    +...+..++|.||+.+.++.+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            346889998888 444 444544444455321     2  11 12222    23457789999998876654421     


Q ss_pred             --------------CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885          619 --------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       619 --------------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaS  658 (725)
                                    +.|..+|.+...  +..+..--.....++|+|+|. ++++
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t  200 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC  200 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence                          345555555443  333332223457899999987 5544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.99  E-value=13  Score=41.64  Aligned_cols=144  Identities=8%  Similarity=0.080  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----  631 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~----  631 (725)
                      ...+..++|+.+++.+..-..++-||--.  ...+  -......++.+.|.+++..++++ .+|.+. |....+..    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~--~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH--NRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe--cCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            44566777887777765433333444321  1222  12234668999999998877766 455543 33333320    


Q ss_pred             eeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeEEEEEecCCCEEEEEEcCCe
Q 004885          632 SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       632 ~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      .......  ....+.++.|.+++. ++++| .+|.|... ...|+.-....    .....+.+.|.++ ...++.+.+|.
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~-~~g~~~G~~G~  392 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDD-KKGFVLGNDGV  392 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCC-CceEEEeCCcE
Confidence            1111111  123588999998876 55444 46766554 34444322222    1456889999776 45556677787


Q ss_pred             EEEE
Q 004885          706 ISIL  709 (725)
Q Consensus       706 V~Iw  709 (725)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            7655

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.67  E-value=1  Score=32.69  Aligned_cols=42  Identities=5%  Similarity=0.067  Sum_probs=33.6

Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEe
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ  691 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fs  691 (725)
                      |+++.+++++..++.|.++|..++..+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            577878888888899999999999988888875556666653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.46  E-value=8.6  Score=45.91  Aligned_cols=142  Identities=14%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE------EEec----------------cCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVK------STLE----------------EHTQWITDVRFSP--SLSRLATSSADRTVR  622 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i------~~l~----------------~H~~~V~~IafsP--d~~~Lasgs~DgtIr  622 (725)
                      .+++++|. .+.|+||+.+.....      ..+.                .-...|+.|...-  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 678999988642211      0110                0112345554433  456789999999999


Q ss_pred             EEECCC-------C----C--------eeeEEEecCCCCeEEEEEc--cCCCeEEEEEeCCCcEEEEECCCC--eeE--E
Q 004885          623 VWDTEN-------P----D--------YSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSINNG--SCA--G  677 (725)
Q Consensus       623 vWDl~~-------~----~--------~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~Dg~I~IwDl~t~--~~v--~  677 (725)
                      +|.+++       .    .        .+...+. ....+++|+++  ...+ ++|++++...|.||-+...  +..  .
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-EEEEecCCceEEEEEEecccccccccc
Confidence            996531       0    0        0111222 23578999998  5544 7888887788888765431  111  1


Q ss_pred             EEecCCCeEEEEEecCC----C--EEEEEEcCCeEEEEEC
Q 004885          678 VFKCQSGATQMRFQPRL----G--RILAAAIENYISILDV  711 (725)
Q Consensus       678 ~~~~~~~V~sv~fspdg----~--~Lla~s~Dg~V~IwDl  711 (725)
                      ...+..-|.+|+|-++.    +  +|++++-.|.|.+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            22345669999997654    1  5666667899988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.33  E-value=8.1  Score=40.74  Aligned_cols=152  Identities=14%  Similarity=0.059  Sum_probs=102.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .-+.++-.|||..-+++...+.|--.|-.+++....-.+....-..|..-||+...++-+.. -|.-.|-++.+  +..|
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence            35678889999999999888889888999998877666666777788899998777665444 56666666654  3333


Q ss_pred             e---c-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          637 T---G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       637 ~---~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .   . -........|++.|. +.+++. .|.---.|-. ...+.+|..  ....+.||..|+|...++.-.++.|...|
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid  216 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID  216 (353)
T ss_pred             ecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence            2   1 234578889999988 555665 2211111211 123334433  45678889999988777766677777777


Q ss_pred             CCCC
Q 004885          711 VETQ  714 (725)
Q Consensus       711 l~tg  714 (725)
                      -.++
T Consensus       217 p~~~  220 (353)
T COG4257         217 PFAG  220 (353)
T ss_pred             cccC
Confidence            6655

>PHA03098 kelch-like protein; Provisional

Probab=90.11  E-value=3.2  Score=48.24  Aligned_cols=143  Identities=11%  Similarity=0.044  Sum_probs=69.5

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCee
Q 004885          566 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS  632 (725)
Q Consensus       566 dg~~LaSgs~Dg------~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~  632 (725)
                      ++.+++.||.++      .+..||..+.+-...  +.........+.+  ++..++.|+.+     ..+.+||..+..- 
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-  370 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW-  370 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce-
Confidence            566677776543      567788766443211  1111111222222  56666777765     3567788776541 


Q ss_pred             eEEEec--CCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885          633 LRTFTG--HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       633 l~~~~~--h~~~V~sl~fsP~g~~llaSgs~D------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~  702 (725)
                       .....  +...-.+++..  ++.+++.|+.+      ..|.+||+.+.+....-..  .....+++. .++..++.|+.
T Consensus       371 -~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~  446 (534)
T PHA03098        371 -REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGI  446 (534)
T ss_pred             -eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCc
Confidence             11111  11111122221  34477776632      3588999887665432221  111122222 23445555543


Q ss_pred             C--------CeEEEEECCCCe
Q 004885          703 E--------NYISILDVETQV  715 (725)
Q Consensus       703 D--------g~V~IwDl~tg~  715 (725)
                      +        ..+.+||.++.+
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             cCCCCCcccceEEEecCCCCc
Confidence            2        238899988763

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=4.6  Score=45.11  Aligned_cols=152  Identities=13%  Similarity=0.127  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S  632 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~  632 (725)
                      +.+-|. |.+..+.|-..|-+.=|-+...   -++..--...++|.+|.|++|.+.|++--.|++|-+++......   .
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            344454 3333333334555666655432   22222223467999999999999999999999999998843221   1


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCCEEEEEEc--CCeEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISI  708 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~--Dg~V~I  708 (725)
                      ..+.+.....|...+|....+ +. ... +..|.+|-+.. .+.++..+. ...|.-..|+++-..++.++.  .+++.-
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnp  181 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNP  181 (657)
T ss_pred             HHHhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccccc
Confidence            223333345688899987744 33 333 33466665432 222333332 466888888888776555544  455555


Q ss_pred             EECCCC
Q 004885          709 LDVETQ  714 (725)
Q Consensus       709 wDl~tg  714 (725)
                      +-++++
T Consensus       182 f~~~~~  187 (657)
T KOG2377|consen  182 FHFRAG  187 (657)
T ss_pred             EEEeec
Confidence            555544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.50  E-value=13  Score=41.07  Aligned_cols=149  Identities=8%  Similarity=0.026  Sum_probs=84.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-CCeEE
Q 004885          569 LLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS  645 (725)
Q Consensus       569 ~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-~~V~s  645 (725)
                      .++++..||.|.-.|.+++..+.....-  ...+.+-.+..+|+ |+.++.++.+..+|.+++. .+-.+.... ..+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~-~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT-LVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc-EEEEEecCCCeEEec
Confidence            4555577888888888888766433221  12222222333554 7788889989999998777 343333333 11222


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eEEEEEe--cCCCEEEEEEc--CCeEEEEECCCCeEEEEE
Q 004885          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQVCRLKL  720 (725)
Q Consensus       646 l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-V~sv~fs--pdg~~Lla~s~--Dg~V~IwDl~tg~~v~~l  720 (725)
                      ..+-.++.  +..++.++.+...|..++..+..+..... -..+...  .....++++..  ++.+.-+|+++|..+-..
T Consensus       148 ~~v~~~~~--v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         148 PPVVGDGT--VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             CcEEcCcE--EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            22233332  33343678999999999988777654221 0011111  12234555555  567888888888776654


Q ss_pred             e
Q 004885          721 Q  721 (725)
Q Consensus       721 ~  721 (725)
                      +
T Consensus       226 ~  226 (370)
T COG1520         226 K  226 (370)
T ss_pred             e
Confidence            3

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.43  E-value=32  Score=37.45  Aligned_cols=144  Identities=12%  Similarity=0.178  Sum_probs=85.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--eEEE-----EeccCCC--------CeEEEEEcCCCCE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKK------AVLWCTES--F--TVKS-----TLEEHTQ--------WITDVRFSPSLSR  611 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~------V~IWdl~~--~--~~i~-----~l~~H~~--------~V~~IafsPd~~~  611 (725)
                      -+.+..|.+.+++..+++.+.++.      +..+++..  .  ..+.     .+..-.+        ...+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356888999876666666677777      66565543  1  1111     1111111        3457888778888


Q ss_pred             EEEEeCC------CeEEEEECCCCCeeeEEE---------------ecCCCCeEEEEEccCCCeEEEEEe----CCC--c
Q 004885          612 LATSSAD------RTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCSCD----NNS--E  664 (725)
Q Consensus       612 Lasgs~D------gtIrvWDl~~~~~~l~~~---------------~~h~~~V~sl~fsP~g~~llaSgs----~Dg--~  664 (725)
                      +++.-.+      ..|+.++.. +. .+..+               ........+|+++|+|..++++.-    .|+  .
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~-~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GR-VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cc-ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            8887777      788888876 33 22222               113356899999999986554321    122  1


Q ss_pred             -------EEE--EECCC-CeeEEEEe----------cCCCeEEEEEecCCCEEEEE
Q 004885          665 -------IRY--WSINN-GSCAGVFK----------CQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       665 -------I~I--wDl~t-~~~v~~~~----------~~~~V~sv~fspdg~~Lla~  700 (725)
                             ++|  ||..+ +.....+.          ....|+.+.+-++++.|+.-
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                   455  45544 32333222          13568899999998866654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.36  E-value=45  Score=38.12  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=37.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----cCCCCeEEEEEcCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL  609 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~-----~H~~~V~~IafsPd~  609 (725)
                      -..-..|+|.||+++|++--..|.|++++..++..  +..+.     .-......|+|+|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            44578999999998777765469999998654422  21111     124678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK10350 hypothetical protein; Provisional

Probab=89.29  E-value=1.1  Score=40.99  Aligned_cols=14  Identities=29%  Similarity=0.432  Sum_probs=7.2

Q ss_pred             cCccchhhhhh-hhH
Q 004885           68 NEKHSESAASY-IES   81 (725)
Q Consensus        68 ~~~~s~~a~qY-iq~   81 (725)
                      +..++.....| +..
T Consensus        21 N~~NNPnqpGY~ipS   35 (145)
T PRK10350         21 NTLNNPNQPGYQIPS   35 (145)
T ss_pred             hccCCCCCCCCcCcH
Confidence            44445555667 443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.00  E-value=2.3  Score=41.90  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             CCeEEEEEccC-----CCeEEEEEeCCCcEEEEECCC
Q 004885          641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       641 ~~V~sl~fsP~-----g~~llaSgs~Dg~I~IwDl~t  672 (725)
                      ..|.+++|+|.     ++.+|++...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            37899999994     467899999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.85  E-value=19  Score=41.41  Aligned_cols=143  Identities=12%  Similarity=0.058  Sum_probs=75.2

Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC---CCeEEEEEccC
Q 004885          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS  651 (725)
Q Consensus       575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~---~~V~sl~fsP~  651 (725)
                      ..+.+.++|.+ |.....+.........+.+.++|.+++...  ..++.+|+...  .+..+.--.   ..-+.+.+.|+
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence            34556666643 444444432222222266778888777665  77888888643  233332211   11356778899


Q ss_pred             CCeEEEEEe-------------CCCcEEEEECCCCeeEEEEec--------C--------------------CCeEEEEE
Q 004885          652 KEDLLCSCD-------------NNSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRF  690 (725)
Q Consensus       652 g~~llaSgs-------------~Dg~I~IwDl~t~~~v~~~~~--------~--------------------~~V~sv~f  690 (725)
                      |+.++++..             .| .|..+| .+|+.+..+..        .                    -++.+|.+
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            886554441             22 366677 77777766542        1                    23789999


Q ss_pred             ecCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCCC
Q 004885          691 QPRLGRILAAAIE-NYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       691 spdg~~Lla~s~D-g~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .+....|++.+.. ..|..+|.++++++-.+-.|.
T Consensus       279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            9966677766664 689999999999998887764

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.70  E-value=9.1  Score=39.00  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--C---cEEEE---ECC--CCeeEE--
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG--  677 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g---~I~Iw---Dl~--t~~~v~--  677 (725)
                      +.|+.+.....|.+|++......+..-...-+.|..+.++..|++++..-...  .   .+|+|   ...  ....+.  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            45555566788999999954433333333447899999999999655432211  2   45664   222  111111  


Q ss_pred             ---------------------EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       678 ---------------------~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                                           .+.....+.+++.+|-.+.|++|+ ++.+.+|.+...
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence                                 111245678888888877776654 567888887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.65  E-value=37  Score=36.28  Aligned_cols=149  Identities=11%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++....++.-+++++..+...++                ++..+.- .+.-+++..  .|++..++..|.-+.+.|+.+
T Consensus        97 ~yvyvad~ssGL~IvDIS~P~sP~----------------~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          97 EYVYVADWSSGLRIVDISTPDSPT----------------LIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             cEEEEEcCCCceEEEeccCCCCcc----------------eeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence            355555577778888554443221                1111111 134556666  588888888677788888865


Q ss_pred             C---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC-CeEEEEEccCCCeEEEEEeCC
Q 004885          587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       587 ~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~-~V~sl~fsP~g~~llaSgs~D  662 (725)
                      .   .....+.........++++  |++-+.+..|+-+.|-|+.++..++..-.-..+ .+.++..+++.. +++..  +
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy--~  232 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY--D  232 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc--c
Confidence            3   2333444444445666665  678888889999999999988754433322233 688888877644 33222  3


Q ss_pred             CcEEEEECCCCeeEEEE
Q 004885          663 SEIRYWSINNGSCAGVF  679 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~  679 (725)
                      ..+.+-|..+.+....+
T Consensus       233 egvlivd~s~~ssp~~~  249 (370)
T COG5276         233 EGVLIVDVSGPSSPTVF  249 (370)
T ss_pred             cceEEEecCCCCCceEe
Confidence            45778887766544333

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.47  E-value=25  Score=43.04  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccC--CCe-
Q 004885          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KED-  654 (725)
Q Consensus       578 ~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~--g~~-  654 (725)
                      .||+++-.  ..+..+.. .+.++....+.+...++.++.++.+...++.........-......|.|++++|-  ++. 
T Consensus       471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~  547 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK  547 (1096)
T ss_pred             cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence            45665533  12223332 3445555555566677777777888777777655222222233467999999976  444 


Q ss_pred             --EEEEEeCCCcEEEEE-CCCCeeEEEEe--c---CCCeEEEEEecCCCEEEEEEcCCeEEEE--ECCCC
Q 004885          655 --LLCSCDNNSEIRYWS-INNGSCAGVFK--C---QSGATQMRFQPRLGRILAAAIENYISIL--DVETQ  714 (725)
Q Consensus       655 --llaSgs~Dg~I~IwD-l~t~~~v~~~~--~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw--Dl~tg  714 (725)
                        +++.|..+..+.+.- +.+...+....  .   ...|.-.+|-.|..+|+++..||.+.-|  |..+|
T Consensus       548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg  617 (1096)
T KOG1897|consen  548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG  617 (1096)
T ss_pred             ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc
Confidence              888888776655543 33333333322  2   2335555666667899999999988655  44554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.44  E-value=2.9  Score=42.90  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeeEE------Ee-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~------~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      +..++.+|++.+.+|.+++||+.+.+..+..      +.       .....|..+.+..+|. .+++-+ +|..+.||.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEeccc
Confidence            3446788999999999999999987632221      11       2456788899998876 444554 5789999988


Q ss_pred             CCeeEEEEe
Q 004885          672 NGSCAGVFK  680 (725)
Q Consensus       672 t~~~v~~~~  680 (725)
                      -+..+....
T Consensus        96 L~~W~~vsd  104 (219)
T PF07569_consen   96 LGCWIRVSD  104 (219)
T ss_pred             cceeEEecc
Confidence            776665544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=87.93  E-value=71  Score=38.63  Aligned_cols=152  Identities=11%  Similarity=0.023  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCEEEEEeCC------CcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-CCCEEEEEeC---CCeEEEEEC
Q 004885          559 ESCHFSPDGKLLATGGHD------KKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-SLSRLATSSA---DRTVRVWDT  626 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~D------g~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~---DgtIrvWDl  626 (725)
                      ..++|++|++.|+.+..+      ..|+.+++.++  +....+.+.........+.+ ++++++..+.   ++.+.+|+.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458999999866655432      36788888876  44445554334344233334 7777654433   457888885


Q ss_pred             CCCCeeeEEEecCCCCe-EEEEEccCCCeEEEEEeCC-C--cEEEEECC-CCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885          627 ENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDNN-S--EIRYWSIN-NGSCAGVFKC--QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V-~sl~fsP~g~~llaSgs~D-g--~I~IwDl~-t~~~v~~~~~--~~~V~sv~fspdg~~Lla  699 (725)
                      .........+..+...+ ..+. +. +..+++....+ .  .|...++. .++....+..  ...+..+.+..  .+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~  330 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVV  330 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEE
Confidence            43221122222233222 2222 32 34455444322 2  34444554 2333334444  23577788873  45554


Q ss_pred             EE-cCCe--EEEEECCCC
Q 004885          700 AA-IENY--ISILDVETQ  714 (725)
Q Consensus       700 ~s-~Dg~--V~IwDl~tg  714 (725)
                      .. .++.  |.++|+.++
T Consensus       331 ~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        331 EERQRGLTSLRQINRKTR  348 (686)
T ss_pred             EEEeCCEEEEEEEcCCCC
Confidence            44 4554  555565433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.75  E-value=1.9  Score=32.35  Aligned_cols=31  Identities=39%  Similarity=0.623  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004885          556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       556 ~~V~~i~fSpd-g--~~LaSgs~Dg~V~IWdl~~  586 (725)
                      +.|.+|.|||+ +  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.75  E-value=26  Score=38.26  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----ccCCCCeEEEEEcCC---CCEEEEEeC-C--------
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D--------  618 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~---i~~l----~~H~~~V~~IafsPd---~~~Lasgs~-D--------  618 (725)
                      -+.|+|.|||++|++ ...|.|++++ ..+..   +..+    ......+..|+|+|+   ..+|++... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999987665 5699999999 34333   2222    223467899999994   334433322 1        


Q ss_pred             CeEEEEECCCCC-------eeeEEEec---CCCCeEEEEEccCCCeEEEEEe
Q 004885          619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       619 gtIrvWDl~~~~-------~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      ..|.-|.+....       ..+..+..   .......|.|.|+|. |+++.+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G  132 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG  132 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence            244445444331       11122222   223457799999995 665554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.20  E-value=2  Score=32.21  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCC
Q 004885          641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       641 ~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t  672 (725)
                      +.|.++.|+|...  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998654  6888887789999999995

It contains a characteristic DLL sequence motif.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.91  E-value=54  Score=36.12  Aligned_cols=153  Identities=12%  Similarity=0.051  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--CCC
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STT  642 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~~~  642 (725)
                      +|+ |+.++.++.++.+|.++++.+........ .+..-.+. ....++.++.++.+...|..++..........  ...
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            666 77788899999999988998888776551 11111111 22344444467888888888776322211110  111


Q ss_pred             eEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeE-----EE-EEec----CCCEEEEEEcCCeEEEEE
Q 004885          643 VMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGAT-----QM-RFQP----RLGRILAAAIENYISILD  710 (725)
Q Consensus       643 V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~~~~~V~-----sv-~fsp----dg~~Lla~s~Dg~V~IwD  710 (725)
                      +..--...+ . .++.+..  ++.+.-+|..+|......+....+.     .. .+..    .+..++.++.++.+..+|
T Consensus       189 ~~~~~~~~~-~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~  266 (370)
T COG1520         189 IYGSPAIAS-G-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLD  266 (370)
T ss_pred             cccCceeec-c-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEE
Confidence            111111112 2 2334443  5567777888888776654211111     01 1100    012345666678888999


Q ss_pred             CCCCeEEEEEeC
Q 004885          711 VETQVCRLKLQV  722 (725)
Q Consensus       711 l~tg~~v~~l~G  722 (725)
                      ..+|+.+-+++.
T Consensus       267 ~~~G~~~W~~~~  278 (370)
T COG1520         267 ADTGELIWSFPA  278 (370)
T ss_pred             cCCCceEEEEec
Confidence            999888776654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.88  E-value=0.059  Score=59.91  Aligned_cols=148  Identities=16%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Las-gs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      -....|-+.+.-++.++.+..|..||-.. ..+..+. ..+...+++|+-+++.++. +-..+.+.+||+.+.......+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            34456777666688888888999998543 3332222 2455678888888776544 4567899999998754211222


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .+. ..-.-+.|++... .++.+...|.|.|++..+.+.+.... +...+++++|.+. .+.+.+++|..+.+-.
T Consensus       115 gg~-~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  115 GGT-SSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-DYVILCDCDNTLSVTT  186 (615)
T ss_pred             cCc-chHHHHhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEeccc-ceeeecCcHHHHHHhh
Confidence            221 1122267887766 44566778899999988776665554 5678999999998 5666777765544433

>PHA02790 Kelch-like protein; Provisional

Probab=86.74  E-value=9.2  Score=44.03  Aligned_cols=138  Identities=7%  Similarity=-0.012  Sum_probs=65.1

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeeeEEE
Q 004885          566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D--gtIrvWDl~~~~~~l~~~  636 (725)
                      ++.++++||.++     ++..||..+.+-..  .+.........+.  -++...+.|+.+  .++..||..+..  ....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~--W~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA--WVNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe--EEEC
Confidence            455667777543     56678876643221  1111111122222  256666777653  357788876543  1111


Q ss_pred             ecC---CCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCCeeEEEEecCCC--eEEEEEecCCCEEEEEEcCCeEEE
Q 004885          637 TGH---STTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       637 ~~h---~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~~~v~~~~~~~~--V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      ..-   ......+.+  + +.+++.|+.++   .+.+||.++......-....+  -.+++ .-+ +.|++.+  |.+.+
T Consensus       347 ~~l~~~r~~~~~~~~--~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~-~~IYv~G--G~~e~  419 (480)
T PHA02790        347 PSLLKPRCNPAVASI--N-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFG-RRLFLVG--RNAEF  419 (480)
T ss_pred             CCCCCCCcccEEEEE--C-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EEC-CEEEEEC--CceEE
Confidence            111   111112222  3 44777777543   477889887655432221111  11222 223 3444433  34677


Q ss_pred             EECCCC
Q 004885          709 LDVETQ  714 (725)
Q Consensus       709 wDl~tg  714 (725)
                      ||.++.
T Consensus       420 ydp~~~  425 (480)
T PHA02790        420 YCESSN  425 (480)
T ss_pred             ecCCCC
Confidence            777665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.49  E-value=8.7  Score=40.09  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             EEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-CCeee-EEE---ecCCCCeEEEEEccC
Q 004885          580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-PDYSL-RTF---TGHSTTVMSLDFHPS  651 (725)
Q Consensus       580 ~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D--gtIrvWDl~~-~~~~l-~~~---~~h~~~V~sl~fsP~  651 (725)
                      .+||+.+.+..-.-......+.+-.|-+||++|.+|+. |  ..|++++... ...+. ...   -....+=.++..-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            46887775543222222334444567889999999876 3  3588888654 11111 111   011122334455678


Q ss_pred             CCeEEEEEeCCCcEEEEECCC-CeeEEEE---ec------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          652 KEDLLCSCDNNSEIRYWSINN-GSCAGVF---KC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       652 g~~llaSgs~Dg~I~IwDl~t-~~~v~~~---~~------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |+.+++.|....+..+|.-+. ......+   ..      ..--.-+...|+|+.++.+..+  -.|||..+.+.++.|.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence            885555555544566666532 1111111   10      0112345668998888777654  4567998888877764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.49  E-value=5.7  Score=45.10  Aligned_cols=74  Identities=11%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEEC----------CCCeeEEEEe------------cCCCeEEEEEecCC---CE
Q 004885          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI----------NNGSCAGVFK------------CQSGATQMRFQPRL---GR  696 (725)
Q Consensus       642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl----------~t~~~v~~~~------------~~~~V~sv~fspdg---~~  696 (725)
                      .|..|..++.|..++.+| .+|.+ |..+          +.|+.+....            .+-.+..++|+|+.   .+
T Consensus       105 eV~~vl~s~~GS~VaL~G-~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIG-IKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEec-CCeeE-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            477888899998555444 46644 4333          2333221111            12236778999985   57


Q ss_pred             EEEEEcCCeEEEEECCCCeEE
Q 004885          697 ILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       697 Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      |+.-.+|++|+|||+...+.+
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            888899999999999765444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.23  E-value=8.4  Score=43.83  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---------CCCeEEE---Ee-------c-cCCCCeEEEEEcCCC---CE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT---------ESFTVKS---TL-------E-EHTQWITDVRFSPSL---SR  611 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl---------~~~~~i~---~l-------~-~H~~~V~~IafsPd~---~~  611 (725)
                      .-.|.-|..++.|..++-+|.+|.+.++=.         ++++.+.   ++       . ...-.+.-++|||+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            345888999999999999998986665431         2222111   11       0 011224456777753   55


Q ss_pred             EEEEeCCCeEEEEECCCCC
Q 004885          612 LATSSADRTVRVWDTENPD  630 (725)
Q Consensus       612 Lasgs~DgtIrvWDl~~~~  630 (725)
                      |..-+.|.+|||||+....
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            6666677777777776544

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=85.61  E-value=54  Score=39.04  Aligned_cols=124  Identities=14%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEEe-cCCCCeEEEEEcc------CCCeEEEEEe-CC--CcE
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFT-GHSTTVMSLDFHP------SKEDLLCSCD-NN--SEI  665 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l-~~~~-~h~~~V~sl~fsP------~g~~llaSgs-~D--g~I  665 (725)
                      ...|..|.|.++++.+++.-.+|.|.+||........ .... .+...|.-=+|-+      ....+|+.+. .+  -++
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5779999999999999999999999999993322111 0111 1111111112222      2233444444 22  257


Q ss_pred             EEEEC--CCCeeEEEE---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          666 RYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       666 ~IwDl--~t~~~v~~~---~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +++.+  +...+...-   ..........|+-..+.|+.- .+++|.+|++-..+..+++.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~  268 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS  268 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE
Confidence            78888  333333221   112334444455444544433 77899999998887777654

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.57  E-value=20  Score=42.54  Aligned_cols=40  Identities=8%  Similarity=0.100  Sum_probs=33.2

Q ss_pred             CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       682 ~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ...+..|.++|+.++|+.-..+|.|.+-+++..++...+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            4678889999998999888889999999888877776665

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=85.53  E-value=0.25  Score=52.55  Aligned_cols=6  Identities=50%  Similarity=0.584  Sum_probs=0.0

Q ss_pred             CccHHH
Q 004885           49 GGFLFE   54 (725)
Q Consensus        49 ~~fL~e   54 (725)
                      +.||.|
T Consensus       276 D~~L~e  281 (468)
T PF11498_consen  276 DTFLNE  281 (468)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            455655

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.35  E-value=32  Score=41.71  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CCe--eeEEE--------ecCCCCeEEEEEccCC---C
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK---E  653 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~----------~~~--~l~~~--------~~h~~~V~sl~fsP~g---~  653 (725)
                      ...|..|.++|+|.+|+..|..+.+ |-.+..          +..  ..+++        ..+...|..+.|+|.+   .
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3568889999999999988876643 333311          111  11111        1234578999999984   4


Q ss_pred             eEEEEEeCCCcEEEEECCC
Q 004885          654 DLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       654 ~llaSgs~Dg~I~IwDl~t  672 (725)
                      .++ .-..|++||+||+..
T Consensus       163 ~l~-vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLV-VLTSDNTLRLYDISD  180 (717)
T ss_pred             eEE-EEecCCEEEEEecCC
Confidence            444 555599999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.18  E-value=4.8  Score=41.33  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=44.1

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       563 fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~-------~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      +..++++|++...+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-|++-+ +|...+||.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3347889999999999999999987765321       1       2345567777776666665554 45566666653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=84.82  E-value=0.28  Score=52.17  Aligned_cols=6  Identities=17%  Similarity=0.506  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 004885          129 TQHLND  134 (725)
Q Consensus       129 ~~~~~~  134 (725)
                      .+..||
T Consensus       379 q~qmng  384 (468)
T PF11498_consen  379 QHQMNG  384 (468)
T ss_dssp             ------
T ss_pred             hhhccc
Confidence            344554

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.18  E-value=35  Score=32.30  Aligned_cols=115  Identities=15%  Similarity=0.061  Sum_probs=68.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWD  625 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~--------~~i~~l~~H~~~V~~IafsP-----d~~~Lasgs~DgtIrvWD  625 (725)
                      ..-.|......|++++.-++|.|++....        ..+..+. -...|++|+--+     ..+.|+.|+ ...|-.||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            34566555567888888999999986532        2333443 345677775433     245566665 56789999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGV  678 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~  678 (725)
                      +.+...  ..++.-...|.++.+-.-   ...+++.|+ +-.|.-||..-.+...+
T Consensus        80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             cccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            987652  223334467888776321   122444443 55677777665444433

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.49  E-value=66  Score=34.20  Aligned_cols=112  Identities=14%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-Ee-ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TL-EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l-~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      .-..|..-|||..-++-+.. -|.-.|-++.+..+ .+ ..| ........|++.+.+.+|+...-. --.|..+.  .+
T Consensus       105 ~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~y-GrLdPa~~--~i  180 (353)
T COG4257         105 SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAY-GRLDPARN--VI  180 (353)
T ss_pred             CCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccc-eecCcccC--ce
Confidence            34566667777655554332 34444544433221 11 112 345677889999998888763211 01111111  23


Q ss_pred             EEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC
Q 004885          634 RTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (725)
Q Consensus       634 ~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~  673 (725)
                      .+|..- ...-..||..|+|..++ +.-.+..|-..|..++
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwy-aslagnaiaridp~~~  220 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWY-ASLAGNAIARIDPFAG  220 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEE-EeccccceEEcccccC
Confidence            333221 23456788899988444 4444556767776655

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.20  E-value=14  Score=42.02  Aligned_cols=61  Identities=13%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       608 d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      ...+++.++..|-||+||--... ....+.+....|..|....+|.++||+|-  ..|.+.|++
T Consensus       572 esGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            45689999999999999975433 34556666788999999999999998884  578788875

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=83.08  E-value=12  Score=40.44  Aligned_cols=91  Identities=13%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ++|+.+++....   +. .-..+..|+. |+ +.++-+..|+|..+|.++|+........+....++|.  |.+++++-+
T Consensus       189 vidv~s~evl~~---GL-smPhSPRWhd-gr-LwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       189 VIDIPSGEVVAS---GL-SMPHSPRWYQ-GK-LWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             EEEeCCCCEEEc---Cc-cCCcCCcEeC-Ce-EEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence            466666552111   11 1234456653 34 6777778899999999988877777777888999998  677777644


Q ss_pred             ----C----------------CeEEEEECCCCeEEEEEe
Q 004885          703 ----E----------------NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       703 ----D----------------g~V~IwDl~tg~~v~~l~  721 (725)
                          +                .-|.|.|++||.+++.|+
T Consensus       261 k~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~  299 (335)
T TIGR03032       261 KLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR  299 (335)
T ss_pred             cccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE
Confidence                1                248899999999888765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.83  E-value=39  Score=38.59  Aligned_cols=106  Identities=11%  Similarity=0.136  Sum_probs=61.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeEEE----e-cCCCCeEEEEEccCC------CeEEEEEeC---
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF----T-GHSTTVMSLDFHPSK------EDLLCSCDN---  661 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-~l~~~----~-~h~~~V~sl~fsP~g------~~llaSgs~---  661 (725)
                      -...+.|+|.|++++|++--..|.|++++..+... .+..+    . .-.+....|+|+|+-      .+++++.+.   
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            45678999999998777766579999998655431 11111    1 124678999999874      345555321   


Q ss_pred             ------CCcEEEEECCCC--e---eEEEEec-----CCCeEEEEEecCCCEEEEEEc
Q 004885          662 ------NSEIRYWSINNG--S---CAGVFKC-----QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       662 ------Dg~I~IwDl~t~--~---~v~~~~~-----~~~V~sv~fspdg~~Lla~s~  702 (725)
                            ...|.-|.+...  .   ....+..     ...-..|+|.|||..+++.+.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                  223444544311  1   1112221     123567889999876555544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN02153 epithiospecifier protein

Probab=82.55  E-value=56  Score=35.52  Aligned_cols=52  Identities=17%  Similarity=0.087  Sum_probs=28.2

Q ss_pred             CcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCCe
Q 004885          663 SEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIE--------------NYISILDVETQV  715 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~D--------------g~V~IwDl~tg~  715 (725)
                      ..|.+||+.+.+....-..     .....+++. .++..++.|+..              +.|.+||+++.+
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            3588999987765543211     111222222 234556666641              268888987653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.91  E-value=8.3  Score=48.27  Aligned_cols=143  Identities=14%  Similarity=0.243  Sum_probs=85.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE--------cCCCCEEEEEeCCCeEEEEECCCCCe--eeEEE
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--------SPSLSRLATSSADRTVRVWDTENPDY--SLRTF  636 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf--------sPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~  636 (725)
                      ++..+|-  |..+.+|+.+++.....+.+-+..|..|..        .|.=.++++.+.--.|.++-+.-...  ....|
T Consensus        91 ~RaWiTi--Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   91 GRAWITI--DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             cceEEEe--CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence            4444444  788999999987777777766666666653        22334455555555566664432211  11112


Q ss_pred             e------cCCCCeEEEEEccCCCeEEEEEeCCCcEEE--EECCC---Ce-eE----------------EEEe--cCCCeE
Q 004885          637 T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINN---GS-CA----------------GVFK--CQSGAT  686 (725)
Q Consensus       637 ~------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I--wDl~t---~~-~v----------------~~~~--~~~~V~  686 (725)
                      .      .....|.++....+|+ +|++|- ||.|+-  |....   ++ |-                ..+.  ...+|.
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~  246 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENGR-IFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR  246 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCCc-EEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence            1      2245688888777777 665655 554432  21111   11 11                1111  245789


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          687 QMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      .+..+.....+.+-+..++|.+||+..
T Consensus       247 qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  247 QITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeEeccccceeeeeccCceEEEEEccC
Confidence            999988877888888899999999986

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.74  E-value=1e+02  Score=34.62  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----
Q 004885          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----  675 (725)
Q Consensus       600 V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----  675 (725)
                      ...+...+++.+++.+.....++-||--...- ...-......+.++.|.+++. +++++ .+|.| +|....+..    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W-~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW-QPHNRASARRIQNMGWRADGG-LWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcce-EEecCCCccceeeeeEcCCCC-EEEEe-CCceE-EEecCCCCccccc
Confidence            44456667777776665444444444422110 111222345688999999988 44343 46665 444444431    


Q ss_pred             -EEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          676 -AGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       676 -v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                       ......   ...++.+.|.++ +.+++++..|.|.+.
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d-~~~~a~G~~G~v~~s  353 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSK-KEAWAAGGSGILLRS  353 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCC-CcEEEEECCCcEEEe
Confidence             222221   234889999887 456667777766554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.63  E-value=24  Score=38.54  Aligned_cols=102  Identities=13%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEE----ecCCCCeEEEEEccC---CCeEEEEEeCC-------
Q 004885          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN-------  662 (725)
Q Consensus       599 ~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~----~~h~~~V~sl~fsP~---g~~llaSgs~D-------  662 (725)
                      ..+.|+|.||+++|++ ...|.|++++ ..+..  .+..+    .........++|+|+   ..+++++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5599999999 33331  22222    123456899999994   34455554422       


Q ss_pred             -CcEEEEECCCC-------eeE-EEEec----CCCeEEEEEecCCCEEEEEEc
Q 004885          663 -SEIRYWSINNG-------SCA-GVFKC----QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       663 -g~I~IwDl~t~-------~~v-~~~~~----~~~V~sv~fspdg~~Lla~s~  702 (725)
                       ..|.-|.+..+       +.+ ..+..    ......|.|.|||..+++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             13433444332       111 11121    344677999999855555544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	725
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-12
2h9l_A	329	Wdr5delta23 Length = 329		5e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		6e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		5e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-04

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
             +  C
Sbjct: 181 TASGQC 186

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
             +  C
Sbjct: 181 TASGQC 186

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 4/186 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVC 716
             +  C
Sbjct: 181 TASGQC 186

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---------------- 598
           TS V    FS DG+ LATG +    V   ++   V    ++                   
Sbjct: 64  TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 599 -WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657
            +I  V FSP    LAT + DR +R+WD EN    +    GH   + SLD+ PS  D L 
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSG-DKLV 181
Query: 658 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVET 713
           S   +  +R W +  G C+     + G T +   P  G+ +AA +++  + + D ET
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDY-SLRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 88  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   +
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +
Sbjct: 96  LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
             G C       S   + + F      I++++ +    I D  +  C
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 22  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 82  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 24  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 84  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 19  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 79  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC 716
           C       S   + + F      I++++ +    I D  +  C
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            Q +   +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FSP
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 190
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
               +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++ 
Sbjct: 191 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 247
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
           W+ N      +    S    + F+P    I +A+ +  + + +   Q+ +
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ 297

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRL 612
           ++V+S  ++P G LLAT   DK   +W     + +   S L  HTQ +  V + PS   L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           A++S D TV+++  E  D+    T  GH +TV SL F PS + L  SC ++  +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V+   F   GKLLA+   D    LW  + F    T+  H   ++ V   P+  
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
            + ++S D+T+++W+ +   Y ++TFTGH   V  +   P+++  L+ SC N+  +R W 
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAG-------VFKCQSGATQMRFQ----------PRLGR----ILAAAIENYISI 708
           +    C         V +C S A +  +            + G+    +L+ + +  I +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 709 LDVETQVCRLKL 720
            DV T +C + L
Sbjct: 323 WDVSTGMCLMTL 334

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F+  +S   
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 687 QMRFQP 692
            +R+ P
Sbjct: 245 SVRYYP 250

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 681
            E  +  + T TGH +    ++    K+++L S + +S ++ W I  G C     G  K 
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 682 QSGATQMRFQPRLGRILAAAIENYISILDVET 713
           QS  T ++F      ++ ++ +  + + D++T
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKT 391

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG     
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
            S    + F P     ++++ +  + + DV T+ C
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 38/242 (15%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           LT  + FV D +L  +N  +  S       D+  R  ++  G T+  F       S+V S
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
             FSPD + + + G +++  LW     C  S   K   E H+ W++ VR+SP +      
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
                  A+   D  ++VW+T   ++ +R TF  H + V  L   P+ +  + +   + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLK 719
           +  W I N +     F   S   Q+ F P+L + +A   +  + I ++ TQ    VC ++
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 720 LQ 721
            +
Sbjct: 296 AE 297

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           D +++ TG  D    +W   +  + +TL  H + +  +RF+  +  + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 681
             +P D +L R   GH   V  +DF    +  + S   +  I+ W  N  +C  V     
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 682 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
            + G   ++++ RL  +++ + +N I + D+E   C
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGAC 328

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 96  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 213 GACDASAKLWDVREGMCRQTF 233

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715
            +N G              + F P     L AA    I I D+E ++
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI 288

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715
            +N G              + F P     L AA    I I D+E ++
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI 265

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
           + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP++   S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
            DRT  +W  +N
Sbjct: 227 QDRTCIIWTQDN 238

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
            +L SC  + ++  W   NG  + +
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQI 92

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           LE H+ +++DV  S + +   ++S D ++R+W+ +N     + F GH+  V+S+ F P  
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENY 705
             ++    +N+ +R W++  G C        GA     + +RF P L    I++   +N 
Sbjct: 122 RQIVSGGRDNA-LRVWNV-KGECMHTL--SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 706 ISILDVET 713
           + + D+ T
Sbjct: 178 VKVWDLAT 185

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 70  TILASCSYDGKVLIWKEENG 89

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVLIWKEENG 87

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 4/189 (2%)
Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
            E+    T  E + I  + + V +  F      +  G  D +  ++   +       E H
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVE 712
            S   +  ++ WS+   +         + G   + + P   +  ++ A+ +  I I D +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 713 TQVCRLKLQ 721
           T+ C   L+
Sbjct: 217 TKSCVATLE 225

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVMIWKEENG 87

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 4/182 (2%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
            ++ WS+   +         + G   + + P   +  ++ A+ +  I I D +T+ C   
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 720 LQ 721
           L+
Sbjct: 224 LE 225

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
            E H  +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P  
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 708
                S   +  ++ WS+   +         + G   + + P   +  ++ A+ +  I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 709 LDVETQVCRLKLQ 721
            D +T+ C   L+
Sbjct: 213 WDYQTKSCVATLE 225

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
            E H  +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P  
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 708
                S   +  ++ WS+   +         + G   + + P   +  ++ A+ +  I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 709 LDVETQVCRLKLQ 721
            D +T+ C   L+
Sbjct: 213 WDYQTKSCVATLE 225

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           L  H + +T V+++     L + S D +  VW + N +  L T  GH+ T+ S+D     
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 706
           +  +    + S I+ W ++NG C   +K      ++ F P  G    A ++N       I
Sbjct: 87  KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 707 SILDVE 712
           +I ++E
Sbjct: 145 NIYEIE 150

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
           PA+  +    + + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
           ++   S  A+ S DRT  +W  +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVXIWKEENG 87

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
           T  V S  ++PDG L A+ G D   VL+     T     E+       H+  +  + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
             +++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSL- 609
           V  C F+P+G+ +A GG D    ++   S         V   L  H  + +  ++ P   
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 610 SRLATSSADRTVRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           +RL T S D+T  +WD         +     +GH+  V+SL  +    ++  S   ++ +
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 666 RYWSI 670
           R W +
Sbjct: 231 RLWDL 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	725
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.64
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.61
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.6
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.56
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.55
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.54
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.44
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.44
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.26
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.24
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.21
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.21
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.2
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.16
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.15
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.15
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.14
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.11
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.97
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.97
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.97
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.96
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.94
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.9
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.87
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.85
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.73
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.67
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.63
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.63
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.62
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.58
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.49
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.37
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.36
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.23
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.15
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.04
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.02
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.91
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.88
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.82
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.79
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.49
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.48
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.42
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.27
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.21
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.15
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.1
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.05
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.9
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.85
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.83
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.75
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.75
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.67
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.42
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.4
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	96.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.32
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.27
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.27
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.56
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.14
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.04
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.75
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.7
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	94.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.35
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.08
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.46
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.81
3ott_A	758	Two-component system sensor histidine kinase; beta	92.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.17
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.96
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.83
3ott_A	758	Two-component system sensor histidine kinase; beta	90.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.27
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.85
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	86.59
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	85.2
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.11
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.02
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.2
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.09
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	82.75
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.35
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.47

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=2.3e-30  Score=273.48  Aligned_cols=215  Identities=20%  Similarity=0.289  Sum_probs=192.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               ++++|+.|+.|++|+...                   ...+..+..|..
T Consensus        11 ~h~~~V~~~~fsp~~~---------------~l~s~~~dg~v~lWd~~~-------------------~~~~~~~~~~~~   56 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEP---------------WVLTTLYSGRVELWNYET-------------------QVEVRSIQVTET   56 (304)
T ss_dssp             EECSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTT-------------------TEEEEEEECCSS
T ss_pred             CCCCceEEEEECCCCC---------------EEEEEcCCCcEEEEECCC-------------------CceeEEeeccCC
Confidence            4556789999999887               899999999999995432                   245677889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999886567889


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+|...|.+++|+|.+..+|++|+.|++|++||++++.+...+..  ...+..++|+|  ++.+|++++.|++|+|||++
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            999999999999996555888999999999999998877666653  46799999987  67799999999999999999


Q ss_pred             CCeEEEEEeCCCC
Q 004885          713 TQVCRLKLQVSHS  725 (725)
Q Consensus       713 tg~~v~~l~GH~s  725 (725)
                      +++++.++.+|.+
T Consensus       217 ~~~~~~~~~~h~~  229 (304)
T 2ynn_A          217 TKSCVATLEGHMS  229 (304)
T ss_dssp             TTEEEEEEECCSS
T ss_pred             CCccceeeCCCCC
Confidence            9999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=1.2e-29  Score=280.10  Aligned_cols=214  Identities=21%  Similarity=0.371  Sum_probs=195.6

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...++++.|+|++.               ++++|+.|+.|++|+...+                   .....+++|.
T Consensus       105 ~gh~~~V~~~~~~p~~~---------------~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~  150 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFS---------------VMVSASEDATIKVWDYETG-------------------DFERTLKGHT  150 (410)
T ss_dssp             ECCSSCEEEEEECSSSS---------------EEEEEESSSCEEEEETTTC-------------------CCCEEECCCS
T ss_pred             cccCCcEEEEEEcCCCC---------------EEEEEeCCCeEEEEECCCC-------------------cEEEEEeccC
Confidence            34567899999999876               8999999999999954332                   3456788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      +.|++++|+|++++|++|+.|++|+|||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||++++. ++..
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~  229 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKT  229 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987 7899


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecC--------------------C
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------L  694 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspd--------------------g  694 (725)
                      +.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|.+++|+|+                    +
T Consensus       230 ~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence            999999999999999987 778999999999999999999988865 677999999996                    5


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          695 GRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .+|++++.|+.|+|||+++++++..+.+|.+
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            6899999999999999999999999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2.8e-29  Score=271.58  Aligned_cols=212  Identities=17%  Similarity=0.190  Sum_probs=178.0

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .+.++.|++++                .+++|+.|+.|++|+...+.               ........+.+|.+.|++
T Consensus        84 ~v~~~~~s~d~----------------~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~  132 (344)
T 4gqb_B           84 GVADLTWVGER----------------GILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVST  132 (344)
T ss_dssp             CEEEEEEETTT----------------EEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEE
T ss_pred             CEEEEEEeCCC----------------eEEEEECCCEEEEEeccCCC---------------ceeEeeccccCCCCCEEE
Confidence            46667777653                57789999999999654331               111223456699999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEEe--
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFT--  637 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~~--  637 (725)
                      |+|+|++++|++|+.|++|+|||+++++++.++.+|...|++++|+|++ .+|++++.|++|++||++++. ++..+.  
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~  211 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCS  211 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC--
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecc
Confidence            9999999999999999999999999999999999999999999999986 578999999999999999887 555553  


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQV  715 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .|...+.+++|+|++..+|++|+.|+.|+|||+++++++..+.. ...|++|+|+|++. +|++++.|++|+|||+++++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            45567999999998887999999999999999999999999886 67899999999985 68889999999999999998


Q ss_pred             EEEEEeCCCC
Q 004885          716 CRLKLQVSHS  725 (725)
Q Consensus       716 ~v~~l~GH~s  725 (725)
                      ++ .+.||.+
T Consensus       292 ~~-~~~~H~~  300 (344)
T 4gqb_B          292 LF-RSQAHRD  300 (344)
T ss_dssp             EE-EECCCSS
T ss_pred             EE-EEcCCCC
Confidence            76 5788864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=9.5e-29  Score=260.26  Aligned_cols=214  Identities=22%  Similarity=0.381  Sum_probs=194.4

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|+|++.               ++++|+.|+.|++|...++                   +....+.+|
T Consensus        19 ~~gh~~~v~~~~~s~~~~---------------~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h   64 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGE---------------WLASSSADKLIKIWGAYDG-------------------KFEKTISGH   64 (312)
T ss_dssp             ECCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCC
T ss_pred             EcccCCcEEEEEECCCCC---------------EEEEeeCCCeEEEEeCCCc-------------------ccchhhccC
Confidence            345667889999999876               8999999999999954322                   345667899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ...|.+++|+|++++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++++. ++.
T Consensus        65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~  143 (312)
T 4ery_A           65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLK  143 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887 788


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+..|...|.+++|+|++. +|++++.|+.|++||+++++++..+..  ...+..++|+|++.+|++++.|+.|++||++
T Consensus       144 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          144 TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999999988 677999999999999999998887754  4579999999999999999999999999999


Q ss_pred             CCeEEEEEeCCC
Q 004885          713 TQVCRLKLQVSH  724 (725)
Q Consensus       713 tg~~v~~l~GH~  724 (725)
                      +++++..+.+|.
T Consensus       223 ~~~~~~~~~~~~  234 (312)
T 4ery_A          223 KGKCLKTYTGHK  234 (312)
T ss_dssp             TTEEEEEECSSC
T ss_pred             CCcEEEEEEecC
Confidence            999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=7.4e-29  Score=261.89  Aligned_cols=199  Identities=22%  Similarity=0.362  Sum_probs=176.1

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      +++++|+.|+.|++|+...+                   +.+..+++|.+.|++++|+|++++|++|+.|++|+|||+++
T Consensus        68 ~~l~s~s~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           68 NWIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             TEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             CEEEEECCCCEEEEEECCCC-------------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence            48999999999999954332                   45667889999999999999999999999999999999987


Q ss_pred             C-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCC
Q 004885          587 F-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNS  663 (725)
Q Consensus       587 ~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg  663 (725)
                      + .....+.+|...|++++|+| ++.+|++|+.|++|++||+++.........+|...|..++|+|.. ..+|++++.|+
T Consensus       129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence            6 56678899999999999999 678999999999999999988774444555677889999998742 23788999999


Q ss_pred             cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|+|||+++++++..+.. ...|.+++|+|++.+|++++.|++|+|||+++++++.++.+|.
T Consensus       209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  270 (304)
T 2ynn_A          209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (304)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence            999999999999999986 6789999999999999999999999999999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.7e-29  Score=263.83  Aligned_cols=220  Identities=17%  Similarity=0.243  Sum_probs=192.6

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|++++.              .++++|+.|++|++|.....              .......+..+++|
T Consensus        13 l~gH~~~V~~l~~~~~~~--------------~~l~s~s~D~~v~~W~~~~~--------------~~~~~~~~~~~~~h   64 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQP--------------NLLLSASRDKTLISWKLTGD--------------DQKFGVPVRSFKGH   64 (319)
T ss_dssp             ECCCSSCEEEEEECSSCT--------------TEEEEEETTSEEEEEEEEEE--------------TTEEEEEEEEEECC
T ss_pred             EccccceEEEEEccCCCc--------------cEEEEecCCccEEEecCCCC--------------CccccccceEEeCC
Confidence            345667788899988553              48999999999999954321              11223456788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++. . ++.
T Consensus        65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~-~~~  142 (319)
T 3frx_A           65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-Q-CLA  142 (319)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-C-EEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-C-eEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999974 3 688


Q ss_pred             EEecCCCCeEEEEEccCCC-----eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          635 TFTGHSTTVMSLDFHPSKE-----DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~-----~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .+.+|...|.+++|+|...     .++++++.|+.|++||++++.+...+.. ...|.+++|+|++.+|++++.|+.|+|
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML  222 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            8999999999999999632     3788999999999999999998888865 678999999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCC
Q 004885          709 LDVETQVCRLKLQVSH  724 (725)
Q Consensus       709 wDl~tg~~v~~l~GH~  724 (725)
                      ||+++++++..+.+|.
T Consensus       223 wd~~~~~~~~~~~~~~  238 (319)
T 3frx_A          223 WNLAAKKAMYTLSAQD  238 (319)
T ss_dssp             EETTTTEEEEEEECCS
T ss_pred             EECCCCcEEEEecCCC
Confidence            9999999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=3.2e-29  Score=276.60  Aligned_cols=201  Identities=19%  Similarity=0.348  Sum_probs=183.8

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      .+.++++|+.|++|++|+..                   ....+..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       161 ~~~~l~sgs~D~~i~iwd~~-------------------~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          161 SGKLLASCSADMTIKLWDFQ-------------------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             TSSEEEEEETTSCCCEEETT-------------------SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEeCC-------------------CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            34599999999999999542                   22456778899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC------------
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK------------  652 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g------------  652 (725)
                      .++.++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++. +...+.+|...|.+++|+|++            
T Consensus       222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            9999999999999999999999999999999999999999999887 788899999999999999963            


Q ss_pred             -------CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          653 -------EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       653 -------~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                             ..+|++|+.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|++|+|||+++++++..+.+|.
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence                   23788999999999999999999998875 6679999999999999999999999999999999999999996


Q ss_pred             C
Q 004885          725 S  725 (725)
Q Consensus       725 s  725 (725)
                      +
T Consensus       381 ~  381 (410)
T 1vyh_C          381 H  381 (410)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.6e-29  Score=265.79  Aligned_cols=200  Identities=23%  Similarity=0.375  Sum_probs=183.7

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++|+.|+.|++|+...+                   +.+..+..|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENG-------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             CCCEEEEEeCCCcEEEEECCCC-------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            3458999999999999954322                   456677889999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      ++++....+..|...|.+++|+|++++|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++. +|++++.|+.
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~  229 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY  229 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTSC
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCC-EEEEEcCCCe
Confidence            9999999999999999999999999999999999999999999887 7889999999999999999988 7789999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |+|||++++.++..+.. ...|.+++|+|++.+|++++.|++|+|||+++++++.++.+|.+
T Consensus       230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~  291 (321)
T 3ow8_A          230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD  291 (321)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence            99999999999988875 66799999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.6e-28  Score=263.47  Aligned_cols=203  Identities=17%  Similarity=0.282  Sum_probs=182.1

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++|+.|+.|++|......               ........+.+|.+.|.++.|++++. |++++.|++|++||+
T Consensus       108 ~~~~l~s~~~d~~v~iw~~~~~~---------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~  171 (340)
T 1got_B          108 SGNYVACGGLDNICSIYNLKTRE---------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI  171 (340)
T ss_dssp             TSSEEEEEETTCEEEEEETTTCS---------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECccCC---------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC
Confidence            34499999999999999653321               12345567789999999999998765 889999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      .+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+.+|...|.+++|+|++. +|++++.|++
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~  249 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDAT  249 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCc
Confidence            9999999999999999999999999999999999999999999987 7889999999999999999987 6779999999


Q ss_pred             EEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          665 IRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |++||++++..+..+.+.   ..|++++|+|++.+|++++.|+.|+|||+.+++++..+.||.+
T Consensus       250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~  313 (340)
T 1got_B          250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN  313 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence            999999999988888753   3699999999999999999999999999999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.5e-28  Score=265.87  Aligned_cols=233  Identities=16%  Similarity=0.214  Sum_probs=191.2

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCC-------------------------
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR-------------------------  530 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~-------------------------  530 (725)
                      ..+...+.++.|++++.               ++++|+.|++|++|+........                         
T Consensus        61 ~gH~~~V~~~~~s~d~~---------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKR---------------RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             ECCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred             cCCCCeEEEEEECCCCC---------------EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee
Confidence            34566778888888765               77777788888888644332110                         


Q ss_pred             -CccccccccCC---CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEc
Q 004885          531 -DRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  606 (725)
Q Consensus       531 -~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iafs  606 (725)
                       +....+|+...   .........+.+|.+.|.+++|+|++..|++|+.|++|++||+++++.+..+.+|...|.+++|+
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence             00011111100   01112345667899999999999999999999999999999999999999999999999999998


Q ss_pred             C--CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--
Q 004885          607 P--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--  682 (725)
Q Consensus       607 P--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--  682 (725)
                      |  ++.+|++|+.|++|++||++++. ++..+.+|...|.+++|+|++. +|++++.|++|++||++++..+..+...  
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~  283 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESI  283 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCc
Confidence            8  46899999999999999999988 7899999999999999999987 7789999999999999999888777642  


Q ss_pred             -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       683 -~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                       ..+.+++|+|++.+|++++.|+.|+|||+.+++++..+.+|.+
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~  327 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN  327 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence             4689999999999999999999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.1e-28  Score=261.37  Aligned_cols=220  Identities=19%  Similarity=0.219  Sum_probs=193.5

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.           ....++++|+.|+.|++|.....                 .......+.+|.
T Consensus        29 ~~H~~~V~~v~~~~~~~-----------~~~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~   80 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKK-----------ENSETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQ   80 (321)
T ss_dssp             TSSSSCEEEEEEC------------------CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCS
T ss_pred             ccCCCcEEEEEEecCCC-----------CCCCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCC
Confidence            45677889999998643           12348999999999999954221                 233455788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||++++. ....
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~  159 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYS  159 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 6778


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      +..|...|.+++|+|+++ +|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|+|||++++
T Consensus       160 ~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             EECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             ecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            888999999999999988 677999999999999999999999885 678999999999999999999999999999999


Q ss_pred             eEEEEEeCCCC
Q 004885          715 VCRLKLQVSHS  725 (725)
Q Consensus       715 ~~v~~l~GH~s  725 (725)
                      +++..+.+|.+
T Consensus       239 ~~~~~~~~h~~  249 (321)
T 3ow8_A          239 NLAGTLSGHAS  249 (321)
T ss_dssp             CEEEEECCCSS
T ss_pred             ceeEEEcCCCC
Confidence            99999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=264.82  Aligned_cols=205  Identities=16%  Similarity=0.140  Sum_probs=172.3

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               +|++|+.|+.|++|+...                   .+.+..+.+|.+
T Consensus       125 ~H~~~V~~v~~spdg~---------------~l~sgs~d~~i~iwd~~~-------------------~~~~~~~~~h~~  170 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGT---------------QAVSGSKDICIKVWDLAQ-------------------QVVLSSYRAHAA  170 (344)
T ss_dssp             CCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCC---------------EEEEEeCCCeEEEEECCC-------------------CcEEEEEcCcCC
Confidence            3445566666666655               999999999999995432                   256778899999


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCee
Q 004885          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .|++++|++++. +|++|+.|++|+|||+++++.+..+.  .|...+++++|+|+ +.+|++|+.|++|+|||++++. +
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~  249 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-C  249 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-E
Confidence            999999999875 78999999999999999998887764  45667999999995 6788999999999999999987 7


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EEEEEcCCeEEEEEC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDV  711 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Lla~s~Dg~V~IwDl  711 (725)
                      +..+.+|...|++|+|+|++..+|++|+.|++|+|||+++++++....|...|++|+|+|++.+ |++++.|++|++|++
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            8999999999999999999977899999999999999999988776666788999999999875 557888999999999


Q ss_pred             CCCeE
Q 004885          712 ETQVC  716 (725)
Q Consensus       712 ~tg~~  716 (725)
                      .+...
T Consensus       330 ~~~~~  334 (344)
T 4gqb_B          330 PTEPL  334 (344)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            87643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=1.5e-27  Score=255.94  Aligned_cols=210  Identities=24%  Similarity=0.415  Sum_probs=187.2

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|++++.               ++++|+.|+.|++|+...                   ...+..+..|
T Consensus        51 l~gH~~~v~~~~~s~d~~---------------~l~s~s~Dg~v~iWd~~~-------------------~~~~~~~~~~   96 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSR---------------LLLSASQDGKLIIWDSYT-------------------TNKVHAIPLR   96 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS---------------EEEEEETTTEEEEEETTT-------------------CCEEEEEECS
T ss_pred             ecCCCCceEEEEECCCCC---------------EEEEEeCCCcEEEEECCC-------------------CCcceEeecC
Confidence            345667889999999886               899999999999994322                   2456677889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      ...|.+++|+|++++|++|+.|+.|++||+.+.    .....+.+|...|.++.|++++ .|++++.|++|++||++++.
T Consensus        97 ~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~  175 (340)
T 1got_B           97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence            999999999999999999999999999999764    4567788999999999999876 48999999999999999887


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                       ++..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|++|+||
T Consensus       176 -~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          176 -QTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -EEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence             7889999999999999999987 778999999999999999999998875 6779999999999999999999999999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      |+++++.+..+.
T Consensus       254 d~~~~~~~~~~~  265 (340)
T 1got_B          254 DLRADQELMTYS  265 (340)
T ss_dssp             ETTTTEEEEEEC
T ss_pred             ECCCCcEEEEEc
Confidence            999998887775

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=3.7e-27  Score=246.70  Aligned_cols=221  Identities=16%  Similarity=0.245  Sum_probs=185.1

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      +...+...+.++.|++++.               ++++|+.|+.|++|.....               .........+.+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~---------------~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~   55 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGR---------------HVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRA   55 (351)
T ss_dssp             EECCCSSCEEEEEECSSSS---------------EEEEEETTSEEEEEEECSS---------------SCCEEEEEEEEC
T ss_pred             cCcccccceeEEEEcCCCC---------------EEEEeeCCCeEEEEECCCC---------------CCcceecceecc
Confidence            3445677899999999886               8999999999999965432               122356677889


Q ss_pred             CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCe
Q 004885          554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT  620 (725)
Q Consensus       554 H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~---------~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~Dgt  620 (725)
                      |...|++++|+|  ++++|++|+.|++|+|||++++         +.+..+.+|...|.+++|+|+  +.+|++++.|+.
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  135 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI  135 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence            999999999999  6999999999999999999876         668888999999999999999  999999999999


Q ss_pred             EEEEECCCCCe-----------------------------------------------------------eeEEEecCCC
Q 004885          621 VRVWDTENPDY-----------------------------------------------------------SLRTFTGHST  641 (725)
Q Consensus       621 IrvWDl~~~~~-----------------------------------------------------------~l~~~~~h~~  641 (725)
                      |++||++++..                                                           .+..+.+|..
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  215 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS  215 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc
Confidence            99999875431                                                           1445567899


Q ss_pred             CeEEEEEccCCC---eEEEEEeCCCcEEEEECCCC---------------------------------------------
Q 004885          642 TVMSLDFHPSKE---DLLCSCDNNSEIRYWSINNG---------------------------------------------  673 (725)
Q Consensus       642 ~V~sl~fsP~g~---~llaSgs~Dg~I~IwDl~t~---------------------------------------------  673 (725)
                      .|++++|+|++.   .+|++++.||.|++||++++                                             
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ  295 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred             ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence            999999999983   58889999999999999865                                             


Q ss_pred             -eeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEEeCCC
Q 004885          674 -SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQVSH  724 (725)
Q Consensus       674 -~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg---~~v~~l~GH~  724 (725)
                       .++..+.. ...|++++|+|++.+|++++.|+.|+|||+.++   +++..+..|+
T Consensus       296 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~  351 (351)
T 3f3f_A          296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQQ  351 (351)
T ss_dssp             EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC---
T ss_pred             ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehcccC
Confidence             45555554 577999999999999999999999999999987   6777777663

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=2.4e-27  Score=255.05  Aligned_cols=200  Identities=22%  Similarity=0.352  Sum_probs=171.7

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .+..+.|+|++.               +|++|+.|+.|++|....+                ..........+|...|.+
T Consensus        18 ~v~~l~~sp~g~---------------~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~   66 (345)
T 3fm0_A           18 RCWFLAWNPAGT---------------LLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRK   66 (345)
T ss_dssp             CEEEEEECTTSS---------------CEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEE
T ss_pred             cEEEEEECCCCC---------------EEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEE
Confidence            678899999887               8999999999999943221                111122334689999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeEEE
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTF  636 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--~~l~~~  636 (725)
                      ++|+|++++|++|+.|++|+|||+...  +++..+.+|...|++++|+|++++|++|+.|++|++||+++..  .++..+
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            999999999999999999999998775  4678899999999999999999999999999999999998764  346778


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--EEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+|...|.+++|+|++. +|++++.|+.|++||++++..  +..+.. ...|++++|+|++.+|++++.|++|+|||+.
T Consensus       147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            89999999999999988 677999999999999988754  455554 6789999999999999999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=5.3e-27  Score=256.93  Aligned_cols=208  Identities=22%  Similarity=0.322  Sum_probs=180.3

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .+.++.|++++.               ++++|+.|+.|++|+...                   .+.+..+.+|...|++
T Consensus       125 ~v~~v~~s~dg~---------------~l~s~~~d~~i~iwd~~~-------------------~~~~~~~~~h~~~v~~  170 (393)
T 1erj_A          125 YIRSVCFSPDGK---------------FLATGAEDRLIRIWDIEN-------------------RKIVMILQGHEQDIYS  170 (393)
T ss_dssp             BEEEEEECTTSS---------------EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEE
T ss_pred             eEEEEEECCCCC---------------EEEEEcCCCeEEEEECCC-------------------CcEEEEEccCCCCEEE
Confidence            467888998876               899999999999995422                   2456778899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEE---
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF---  636 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~---  636 (725)
                      ++|+|++++|++|+.|++|++||++++++...+. +...|.+++|+| ++.+|++|+.|++|++||++++. .+..+   
T Consensus       171 ~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~  248 (393)
T 1erj_A          171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSE  248 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC--
T ss_pred             EEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeeccc
Confidence            9999999999999999999999999999887776 567899999999 89999999999999999999877 55555   


Q ss_pred             ----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC------------eeEEEEec-CCCeEEEEEecCCCEEEE
Q 004885          637 ----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------SCAGVFKC-QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       637 ----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~------------~~v~~~~~-~~~V~sv~fspdg~~Lla  699 (725)
                          .+|...|.+++|+|++. +|++++.|+.|++||+++.            .+...+.. ...|.+++|+|++.+|++
T Consensus       249 ~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  327 (393)
T 1erj_A          249 NESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS  327 (393)
T ss_dssp             ----CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred             ccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence                57899999999999988 6779999999999999753            34445544 567999999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          700 AAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       700 ~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ++.|+.|++||+++++++..+.||.+
T Consensus       328 gs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          328 GSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCC
Confidence            99999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=1.5e-27  Score=258.44  Aligned_cols=174  Identities=18%  Similarity=0.279  Sum_probs=155.3

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN  628 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~  628 (725)
                      ...+|.+.|++++|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|+|++. +|++++.|++|++||+++
T Consensus       134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            3458999999999999999999999999999999999999999999999999999999864 789999999999999998


Q ss_pred             CCeeeEE--EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCC-EEEEEEcCC
Q 004885          629 PDYSLRT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIEN  704 (725)
Q Consensus       629 ~~~~l~~--~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~Dg  704 (725)
                      +. ++..  +..|...|.+|+|+|++..+|++++.|+.|++||+++++++..+.. ...|++++|+|++. +|++++.|+
T Consensus       214 ~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          214 PK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             SS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             Cc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence            77 3433  3456778999999999888999999999999999999999988875 67899999999975 677889999


Q ss_pred             eEEEEECCCCeEEEEEeCCCC
Q 004885          705 YISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      +|+|||+++++++..+ +|.+
T Consensus       293 ~i~iwd~~~~~~~~~~-~H~~  312 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL-SHRD  312 (357)
T ss_dssp             CEEEECTTSCEEEEEC-CCSS
T ss_pred             EEEEEECCCCcEeEEC-CCCC
Confidence            9999999999988765 6753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=2.6e-27  Score=258.21  Aligned_cols=234  Identities=18%  Similarity=0.263  Sum_probs=192.7

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC--------------------------
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP--------------------------  529 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~--------------------------  529 (725)
                      ..+...+.++.|+|++.               ++++|+.|++|++|+.......                          
T Consensus        63 ~gH~~~V~~~~~sp~~~---------------~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKN---------------WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CCCSSCEEEEEECTTSS---------------CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cccccEEEEEEEcCCCC---------------EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee
Confidence            45667899999999886               8999999999999976543211                          


Q ss_pred             CCccccccccCCC----ceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEe-----ccCCCC
Q 004885          530 RDRVGRSAEVGKG----FTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQW  599 (725)
Q Consensus       530 ~~~~~~~~~~~~~----~~~~~~~~l~~H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l-----~~H~~~  599 (725)
                      .+...++|+....    ........+.+|.+.|.++.|+|+ +.+|++|+.|++|++||+.+++.+..+     .+|...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            1111222222111    111233457799999999999996 457999999999999999999988887     679999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004885          600 ITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (725)
Q Consensus       600 V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~  678 (725)
                      |.+++|++ ++.+|++|+.|++|++||++....++..+.+|...|.+|+|+|++. +|++++.|++|+|||++++.++..
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEE
Confidence            99999987 7899999999999999999865557899999999999999999988 678999999999999999999888


Q ss_pred             EecC--------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE----eCCCC
Q 004885          679 FKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL----QVSHS  725 (725)
Q Consensus       679 ~~~~--------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l----~GH~s  725 (725)
                      +...        ..|++++|+|+|.+|++++.|+.|+|||+.+++++..+    .+|.+
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence            7642        23899999999999999999999999999999999888    57753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=6.2e-27  Score=246.32  Aligned_cols=207  Identities=14%  Similarity=0.208  Sum_probs=174.9

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.               +|++|+.|++|++|.....                 ..+.+..+.+|.
T Consensus         6 ~~h~~~V~~~~~s~~g~---------------~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGK---------------RMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHE   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCS
T ss_pred             cCCcCceEEEEECCCCC---------------EEEEEeCCCEEEEEecCCC-----------------CcEEEEEEcccc
Confidence            44566788999999887               8999999999999954321                 123456788999


Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004885          556 SKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      +.|++++|++  ++++|++|+.|++|+|||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||+++.
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            9999999986  48999999999999999998763  56678889999999999997  889999999999999999876


Q ss_pred             C-eeeEEEecCCCCeEEEEEccCC------------CeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeEEEEEe
Q 004885          630 D-YSLRTFTGHSTTVMSLDFHPSK------------EDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMRFQ  691 (725)
Q Consensus       630 ~-~~l~~~~~h~~~V~sl~fsP~g------------~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~-~~~V~sv~fs  691 (725)
                      . .....+.+|...|.+++|+|++            ..+|++|+.|+.|+|||++++.    ++..+.. ...|.+|+|+
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s  213 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence            4 2246778999999999999973            2478899999999999998765    5556654 6779999999


Q ss_pred             cCC---CEEEEEEcCCeEEEEECCCC
Q 004885          692 PRL---GRILAAAIENYISILDVETQ  714 (725)
Q Consensus       692 pdg---~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |++   .+|++++.|++|+|||+++.
T Consensus       214 p~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          214 PTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCCceEEEEEECCCcEEEEEeCCC
Confidence            985   78999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.9e-27  Score=251.06  Aligned_cols=219  Identities=25%  Similarity=0.405  Sum_probs=174.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+|++.               ++++|+.|+.|++|.......            .......+..+.+|...
T Consensus        57 h~~~v~~v~~sp~~~---------------~las~s~D~~v~iw~~~~~~~------------~~~~~~~~~~~~~h~~~  109 (330)
T 2hes_X           57 HKKAIRSVAWRPHTS---------------LLAAGSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENE  109 (330)
T ss_dssp             CCSCEEEEEECTTSS---------------EEEEEETTSCEEEEEC-------------------CCCEEEEEEC----C
T ss_pred             ccCCEEEEEECCCCC---------------EEEEEeCCCcEEEEEcccCcC------------ccccceeEEEEcCCCCc
Confidence            555678888888765               899999999999996532210            11233566788999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS  632 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~  632 (725)
                      |++++|+|++++|++|+.|++|+|||++.    .+++..+.+|...|++++|+|++.+|++++.|++|++||+.+.. .+
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC  189 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence            99999999999999999999999999943    35778899999999999999999999999999999999998753 36


Q ss_pred             eEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC--------eeEEEEe--cCCCeEEEEEecCCCEEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG--------SCAGVFK--CQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~--------~~v~~~~--~~~~V~sv~fspdg~~Lla~s  701 (725)
                      +..+.+|...|.+++|+|++ ..+|++++.|++|+|||++.+        .++..+.  +...|.+++|+++ .+|++++
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~  268 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVG  268 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEE
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEe
Confidence            78899999999999999983 237889999999999999754        3444443  4577999999976 5899999


Q ss_pred             cCCeEEEEECCCCe--EEEE-EeCCC
Q 004885          702 IENYISILDVETQV--CRLK-LQVSH  724 (725)
Q Consensus       702 ~Dg~V~IwDl~tg~--~v~~-l~GH~  724 (725)
                      .|+.|+|||+.+++  ++.. +.+|.
T Consensus       269 ~dg~v~iw~~~~~~~~~~~~~~~~h~  294 (330)
T 2hes_X          269 ADGVLAVYEEVDGEWKVFAKRALCHG  294 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred             CCCEEEEEEcCCCceEEEeccccccc
Confidence            99999999998873  3433 35664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=1.7e-27  Score=258.03  Aligned_cols=204  Identities=16%  Similarity=0.193  Sum_probs=177.9

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               ++++|+.|+.|++|+..                   +...+..+++|..
T Consensus       137 ~h~~~V~~v~~spdg~---------------~l~sgs~dg~v~iwd~~-------------------~~~~~~~~~~h~~  182 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGT---------------QAVSGGKDFSVKVWDLS-------------------QKAVLKSYNAHSS  182 (357)
T ss_dssp             CCSSCEEEEEECSSSS---------------EEEEEETTSCEEEEETT-------------------TTEEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCC---------------EEEEEeCCCeEEEEECC-------------------CCcEEEEEcCCCC
Confidence            3456678888888776               89999999999999432                   2356778889999


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCee
Q 004885          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .|++++|++++. +|++++.|++|+|||+++++.+..+  ..|...|++++|+|+ +.+|++|+.|+.|++||++++. +
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~  261 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-S  261 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-G
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-E
Confidence            999999999875 7899999999999999988766544  456788999999997 5689999999999999999987 7


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDV  711 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl  711 (725)
                      +..+.+|...|++|+|+|++..+|++|+.|++|+|||+++++++..+.+...|++|+|+| ++.+|++++.|++|++||+
T Consensus       262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            889999999999999999987789999999999999999999998888888999999998 7889999999999999999


Q ss_pred             CCCe
Q 004885          712 ETQV  715 (725)
Q Consensus       712 ~tg~  715 (725)
                      .+..
T Consensus       342 ~~~~  345 (357)
T 4g56_B          342 PSEG  345 (357)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            7653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=5.5e-27  Score=272.16  Aligned_cols=226  Identities=18%  Similarity=0.298  Sum_probs=186.8

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCC--------c----------------
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD--------R----------------  532 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~--------~----------------  532 (725)
                      .+...++++.|+|++.               ++++|+.|++|++|+.........        .                
T Consensus        57 ~h~~~v~~~~~spdg~---------------~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~  121 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGY---------------YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  121 (611)
T ss_dssp             CCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCceEEEEECCCCc---------------EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence            4556688888888776               999999999999997643211100        0                


Q ss_pred             --------cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEE
Q 004885          533 --------VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV  603 (725)
Q Consensus       533 --------~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~I  603 (725)
                              ...+|+.     ......+.+|...|++++|+|++. +|++|+.|++|++||..+++++.++.+|...|+++
T Consensus       122 ~~~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v  196 (611)
T 1nr0_A          122 GEGRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV  196 (611)
T ss_dssp             ECCSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             ECCCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE
Confidence                    0011111     122345789999999999999987 69999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004885          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (725)
Q Consensus       604 afsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v  676 (725)
                      +|+|++++|++++.|++|++||+.++. ++..+.       +|.+.|.+++|+|++. +|++++.|++|+|||+++++++
T Consensus       197 ~fspdg~~las~s~D~~i~lwd~~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          197 RYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEECCCCc-EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcee
Confidence            999999999999999999999999887 666663       7999999999999988 6779999999999999988776


Q ss_pred             EEEe--------------------------------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          677 GVFK--------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       677 ~~~~--------------------------------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ..+.                                            +...|++++|+|++.+|++++.|++|++||+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence            5442                                            24569999999999999999999999999999


Q ss_pred             CCeEEEEE-eCCC
Q 004885          713 TQVCRLKL-QVSH  724 (725)
Q Consensus       713 tg~~v~~l-~GH~  724 (725)
                      ++++...+ .+|.
T Consensus       355 ~~~~~~~~~~~h~  367 (611)
T 1nr0_A          355 TGISNRVFPDVHA  367 (611)
T ss_dssp             TCCEEECSSCSCS
T ss_pred             CCceeeecccCCc
Confidence            99887766 4553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-26  Score=247.45  Aligned_cols=213  Identities=22%  Similarity=0.375  Sum_probs=171.0

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-cC-C
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-S  554 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-H  554 (725)
                      .+...+.++.|++                 .++++|+.|+.|++|....+                 ....+..+ .+ |
T Consensus        12 ~h~~~v~~~~~s~-----------------~~las~~~D~~i~lw~~~~~-----------------~~~~~~~~~~~~h   57 (330)
T 2hes_X           12 LYKEKIWSFDFSQ-----------------GILATGSTDRKIKLVSVKYD-----------------DFTLIDVLDETAH   57 (330)
T ss_dssp             CCSSCEEEEEEET-----------------TEEEEEESSSCEEEEECSSS-----------------CCEEEEEECTTCC
T ss_pred             cCCCceeeeccCC-----------------CEEEEEcCCCEEEEEEecCC-----------------CeEEEEEEecCCc
Confidence            3445666677665                 17899999999999954322                 11233344 34 9


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~  627 (725)
                      ...|++++|+|++++|++|+.|++|+|||++.       .+.+..+.+|...|++++|+|++++|++|+.|++|++||++
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999999843       45677889999999999999999999999999999999995


Q ss_pred             CCC---eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC--eeEEEEec-CCCeEEEEEecC--CCEEEE
Q 004885          628 NPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPR--LGRILA  699 (725)
Q Consensus       628 ~~~---~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~--~~v~~~~~-~~~V~sv~fspd--g~~Lla  699 (725)
                      ...   .++..+.+|...|.+++|+|++. +|++++.|++|++||+.++  .++..+.. ...|.+++|+|+  +.+|++
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence            432   35678889999999999999987 7789999999999999876  57777764 678999999998  668999


Q ss_pred             EEcCCeEEEEECCCC--------eEEEEEeC-CC
Q 004885          700 AAIENYISILDVETQ--------VCRLKLQV-SH  724 (725)
Q Consensus       700 ~s~Dg~V~IwDl~tg--------~~v~~l~G-H~  724 (725)
                      ++.|++|+|||++++        .++..+.+ |.
T Consensus       217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~  250 (330)
T 2hes_X          217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK  250 (330)
T ss_dssp             EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred             EeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence            999999999999765        56666665 53

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=2.7e-26  Score=241.46  Aligned_cols=212  Identities=20%  Similarity=0.353  Sum_probs=180.0

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+..+.|++++.               ++++|+.|+.|++|+....                   +.+..+.+|...
T Consensus        64 h~~~v~~~~~~~~~~---------------~l~s~~~d~~i~vwd~~~~-------------------~~~~~~~~~~~~  109 (312)
T 4ery_A           64 HKLGISDVAWSSDSN---------------LLVSASDDKTLKIWDVSSG-------------------KCLKTLKGHSNY  109 (312)
T ss_dssp             CSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSC
T ss_pred             CCCceEEEEEcCCCC---------------EEEEECCCCEEEEEECCCC-------------------cEEEEEcCCCCC
Confidence            344556666666554               8999999999999954322                   356678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE-
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-  636 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~-  636 (725)
                      |.+++|+|++++|++|+.|++|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++++. ++..+ 
T Consensus       110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~  188 (312)
T 4ery_A          110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLI  188 (312)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887 45444 


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-C--eEEEEE-ecCCCEEEEEEcCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-G--ATQMRF-QPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~-~--V~sv~f-spdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ..+...+.+++|+|++. ++++++.|+.|++||+++++++..+..+. .  .....| .+++.+|++++.|+.|+|||++
T Consensus       189 ~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          189 DDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             CSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             ccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            45677899999999988 66688899999999999999998887532 2  222334 4667789999999999999999


Q ss_pred             CCeEEEEEeCCCC
Q 004885          713 TQVCRLKLQVSHS  725 (725)
Q Consensus       713 tg~~v~~l~GH~s  725 (725)
                      +++++..+.+|.+
T Consensus       268 ~~~~~~~~~~h~~  280 (312)
T 4ery_A          268 TKEIVQKLQGHTD  280 (312)
T ss_dssp             TCCEEEEECCCSS
T ss_pred             CchhhhhhhccCC
Confidence            9999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=2.4e-26  Score=244.53  Aligned_cols=195  Identities=19%  Similarity=0.365  Sum_probs=172.4

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      .+++++|+.|++|++|+...+                   +.+..+.+|...|.+++|+|++.+|++|+.|++|+|||++
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATG-------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEeCCCEEEEEECCCC-------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            349999999999999954322                   4567788999999999999999999999999999999996


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd------~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                       +.++..+.+|...|.+++|+|.      +.+|++++.|++|++||+++.. ....+.+|...|.+++|+|++. +|+++
T Consensus       138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~-~l~s~  214 (319)
T 3frx_A          138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT-LIASA  214 (319)
T ss_dssp             -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS-EEEEE
T ss_pred             -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC-EEEEE
Confidence             4677788999999999999995      4489999999999999999877 6788999999999999999988 77799


Q ss_pred             eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +.|+.|+|||+++++++..+.....|.+++|+|++.+|++++ ++.|+||++..+..+..+..+
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~  277 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPE  277 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCC
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcc
Confidence            999999999999999999999888999999999988776655 566999999998888877543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.8e-27  Score=263.91  Aligned_cols=214  Identities=13%  Similarity=0.162  Sum_probs=179.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...++++.|+|...              .+|++|+.|+.|++|+.....                 ...+..+.+|.+.
T Consensus       118 ~~~~V~~l~~~P~~~--------------~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~  166 (435)
T 4e54_B          118 FDRRATSLAWHPTHP--------------STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGS  166 (435)
T ss_dssp             CSSCEEEEEECSSCT--------------TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCC
T ss_pred             CCCCEEEEEEeCCCC--------------CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCC
Confidence            455689999998543              389999999999999543321                 1233456789999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      |++|+|+| ++++|++|+.|++|+|||+++.........  +...+.+++|+|++.+|++|+.|++|++||++..  .+.
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~  244 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELW  244 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeE
Confidence            99999998 789999999999999999987655443333  3456789999999999999999999999999754  477


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~----~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .+.+|...|.+|+|+|++..+|++++.|+.|+|||+++.+....+    .+...|++++|+|++.+|++++.|+.|+|||
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence            888999999999999999989999999999999999987654433    3467899999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCC
Q 004885          711 VETQVCRLKLQVSH  724 (725)
Q Consensus       711 l~tg~~v~~l~GH~  724 (725)
                      ++++.+...+.+|.
T Consensus       325 ~~~~~~~~~~~~~~  338 (435)
T 4e54_B          325 ASQWDCPLGLIPHP  338 (435)
T ss_dssp             SSSSSSEEEECCCC
T ss_pred             CCCCccceEEeccc
Confidence            99999988888774

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=4.2e-26  Score=244.66  Aligned_cols=222  Identities=16%  Similarity=0.231  Sum_probs=178.2

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|.....         ......++++|+.|++|++|.......            ..........+.+|
T Consensus        17 l~gH~~~V~~~~~~~s~~---------~~~d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h   75 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQK---------ENEDSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGH   75 (343)
T ss_dssp             EECCSSCEEEEEECCCSS---------TTCCCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCC
T ss_pred             eccchhhhhheeeEEEee---------cCCCCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccC
Confidence            344666778888833211         011335899999999999996543311            11223456778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ...|.+++|+|++.+|++|+.|++|+|||+++++.+..+.+|...|++++|+|++++|++++.|++|++||+...  +..
T Consensus        76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~  153 (343)
T 2xzm_R           76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKF  153 (343)
T ss_dssp             SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--cee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999843  333


Q ss_pred             EEe---cCCCCeEEEEEccCCC---------eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE
Q 004885          635 TFT---GHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       635 ~~~---~h~~~V~sl~fsP~g~---------~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s  701 (725)
                      .+.   +|...|.+++|+|++.         .+|++++.|+.|++||. +..+...+.. ...|.+++|+|++.+|++++
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence            333   7888999999999872         47889999999999995 4566666654 67899999999999999999


Q ss_pred             cCCeEEEEECCC-CeEEEEE
Q 004885          702 IENYISILDVET-QVCRLKL  720 (725)
Q Consensus       702 ~Dg~V~IwDl~t-g~~v~~l  720 (725)
                      .|+.|+|||+++ ..+...+
T Consensus       233 ~dg~v~iwd~~~~~~~~~~~  252 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQREF  252 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEEE
T ss_pred             CCCeEEEEECCCCcccceee
Confidence            999999999943 3333333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.5e-26  Score=271.97  Aligned_cols=220  Identities=16%  Similarity=0.227  Sum_probs=188.8

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...|...++++.|++++.              .++++|+.|++|++|......              .........+.+|
T Consensus       378 l~~H~~~V~~v~~~~~~~--------------~~l~s~s~D~~i~~W~~~~~~--------------~~~~~~~~~~~~h  429 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNA--------------DIIVSASRDKSIILWKLTKDD--------------KAYGVAQRRLTGH  429 (694)
T ss_dssp             EECCSSCEEEEECCTTCC--------------SEEEEEETTSEEEEEECCCST--------------TCSCEEEEEEECC
T ss_pred             cccCCceeEEEEecCCCC--------------CEEEEEeCCCcEEEEEccCCC--------------cccccccceecCC
Confidence            345677788888887553              489999999999999654431              1111345678899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ...|.+++|+|++++|++|+.|++|+|||+.++..+..+.+|...|++++|+|++++|++|+.|++|+|||+....  ..
T Consensus       430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--~~  507 (694)
T 3dm0_A          430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--KY  507 (694)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--ce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987543  22


Q ss_pred             EE----ecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          635 TF----TGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       635 ~~----~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      .+    .+|...|.+++|+|++. .++++++.|++|+|||+++++++..+.. ...|++++|+|++.+|++++.|+.|+|
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i  587 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL  587 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            22    46888999999999863 4788999999999999999999988875 677999999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCC
Q 004885          709 LDVETQVCRLKLQVSH  724 (725)
Q Consensus       709 wDl~tg~~v~~l~GH~  724 (725)
                      ||+++++++..+..|.
T Consensus       588 wd~~~~~~~~~~~~~~  603 (694)
T 3dm0_A          588 WDLAEGKKLYSLEANS  603 (694)
T ss_dssp             EETTTTEEEECCBCSS
T ss_pred             EECCCCceEEEecCCC
Confidence            9999999998877653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=247.51  Aligned_cols=205  Identities=25%  Similarity=0.405  Sum_probs=174.1

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               +|++|+.|+.|++|.....                 ....+..+.+|..
T Consensus        59 ~h~~~v~~~~~sp~g~---------------~l~s~s~D~~v~iw~~~~~-----------------~~~~~~~~~~h~~  106 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGN---------------YLASASFDATTCIWKKNQD-----------------DFECVTTLEGHEN  106 (345)
T ss_dssp             SCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEEECCC------------------EEEEEEECCCSS
T ss_pred             ccCCcEEEEEECCCCC---------------EEEEEECCCcEEEEEccCC-----------------CeEEEEEccCCCC
Confidence            4555677788887765               9999999999999954221                 2345678899999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~-~~  632 (725)
                      .|.+++|+|++++|++|+.|++|+|||+++.   .++..+.+|...|.+++|+|++.+|++++.|++|++||+++.. .+
T Consensus       107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~  186 (345)
T 3fm0_A          107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC  186 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence            9999999999999999999999999999765   4567788999999999999999999999999999999998765 24


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---------------CeeEEEEe--cCCCeEEEEEecCCC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------------GSCAGVFK--CQSGATQMRFQPRLG  695 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---------------~~~v~~~~--~~~~V~sv~fspdg~  695 (725)
                      ...+.+|...|++|+|+|++. +|++++.|++|+|||+..               ..++..+.  +...|.+++|+|++.
T Consensus       187 ~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  265 (345)
T 3fm0_A          187 CATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG  265 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC
T ss_pred             EEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC
Confidence            578899999999999999988 677999999999999632               13444444  356799999999999


Q ss_pred             EEEEEEcCCeEEEEECCCC
Q 004885          696 RILAAAIENYISILDVETQ  714 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg  714 (725)
                      .|++++.|+.|+||+++.+
T Consensus       266 ~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          266 ALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             CEEEEETTSCEEEEEECTT
T ss_pred             EEEEEeCCCeEEEEEeCCC
Confidence            9999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=4.3e-26  Score=249.72  Aligned_cols=230  Identities=20%  Similarity=0.352  Sum_probs=177.1

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               ++++|+ |+.+++|...++........+......... ........+..
T Consensus        62 ~h~~~V~~v~fspdg~---------------~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~  124 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGE---------------YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN-LNTSSSPSSDL  124 (393)
T ss_dssp             ECSSCCCEEEECTTSS---------------EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCC
T ss_pred             CCCCEEEEEEECCCCC---------------EEEEEc-CCcEEEEEecCCCEEEEecCcccccccccc-ccccccCCCce
Confidence            3566788999999886               888876 789999976554321111100000000000 00111123445


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++. +...+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~  203 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTL  203 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999876 55555


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--------~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      . +...|.+++|+|....+|++++.|+.|++||++++.++..+.        +...|++++|+|++.+|++++.|+.|+|
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            4 556799999999434478899999999999999998887762        3567999999999999999999999999


Q ss_pred             EECCC------------CeEEEEEeCCCC
Q 004885          709 LDVET------------QVCRLKLQVSHS  725 (725)
Q Consensus       709 wDl~t------------g~~v~~l~GH~s  725 (725)
                      ||+++            +.+...+.+|.+
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~  311 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD  311 (393)
T ss_dssp             EEC---------------CEEEEEECCSS
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccC
Confidence            99976            456778888863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=3.8e-28  Score=261.58  Aligned_cols=214  Identities=16%  Similarity=0.185  Sum_probs=175.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+|++.               ++++|+.|+.|++|.....                 .+..+..+.+|...
T Consensus        10 ~~~~v~~~~~s~~g~---------------~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~   57 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT---------------EFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKI   57 (377)
T ss_dssp             CSSCCSCCEECSSSS---------------EEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSC
T ss_pred             CCCcEEEEEECCCCC---------------EEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCce
Confidence            344677788888776               8999999999999944221                 22455677899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--e
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--S  632 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~  632 (725)
                      |++++|+|++++|++|+.|++|+|||+.++.   ....+.+|...|++++|+|++++|++++.|++|++||+++...  +
T Consensus        58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence            9999999999999999999999999998876   6777889999999999999999999999999999999998752  3


Q ss_pred             eEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC------------------CCeeEEEEecCCCeEEEEEecC
Q 004885          633 LRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       633 l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~------------------t~~~v~~~~~~~~V~sv~fspd  693 (725)
                      ...+.+ |...|.+++|+|++. +|++++.|+.|++||++                  .+.++..+.+...|++++|+|+
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS  216 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT
T ss_pred             eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC
Confidence            667777 999999999999987 77799999999999985                  3456666655778999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeE----EEEEeCCC
Q 004885          694 LGRILAAAIENYISILDVETQVC----RLKLQVSH  724 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg~~----v~~l~GH~  724 (725)
                      +.+|++++.|+.|+|||++++++    +..+.+|.
T Consensus       217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  251 (377)
T 3dwl_C          217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ  251 (377)
T ss_dssp             SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence            99999999999999999999977    88888886

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=1.6e-25  Score=236.06  Aligned_cols=221  Identities=15%  Similarity=0.178  Sum_probs=194.6

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...++++.|+|++.              ++|++|+.|++|++|+.....              .........+++|.
T Consensus        35 ~GH~~~V~~v~~sp~~~--------------~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~   86 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFP--------------DMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHS   86 (340)
T ss_dssp             CCCSSCEEEEEECTTCT--------------TEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCS
T ss_pred             CCccCCEEEEEEeCCCC--------------CEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCC
Confidence            45777899999999743              389999999999999654431              22234567789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence            99999999999999999999999999999999988888889999999999999999999999999999999877655566


Q ss_pred             EecCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          636 FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~-~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      +.+|...|..++|++++. .++++++.|+.|++||+++++++..+.. ...|++++|+|++.+|++++.|+.|+|||+++
T Consensus       167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            678999999999998754 3678899999999999999999988875 67899999999999999999999999999999


Q ss_pred             CeEEEEEeCCC
Q 004885          714 QVCRLKLQVSH  724 (725)
Q Consensus       714 g~~v~~l~GH~  724 (725)
                      ++++..+.+|.
T Consensus       247 ~~~~~~~~~~~  257 (340)
T 4aow_A          247 GKHLYTLDGGD  257 (340)
T ss_dssp             TEEEEEEECSS
T ss_pred             CceeeeecCCc
Confidence            99999998774

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=6e-26  Score=245.46  Aligned_cols=197  Identities=21%  Similarity=0.308  Sum_probs=171.8

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+..+.|++++.               .+++|+.|++|++|+...+                   +.+..+.+|...
T Consensus       153 h~~~v~~~~~~~~~~---------------~l~t~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~  198 (354)
T 2pbi_B          153 HTNYLSACSFTNSDM---------------QILTASGDGTCALWDVESG-------------------QLLQSFHGHGAD  198 (354)
T ss_dssp             CSSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSC
T ss_pred             cCCcEEEEEEeCCCC---------------EEEEEeCCCcEEEEeCCCC-------------------eEEEEEcCCCCC
Confidence            445566777777665               8899999999999954322                   456778899999


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          558 VESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      |.+++|+|  ++++|++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++++.|++|++||++... .+..
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-~~~~  277 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAI  277 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence            99999988  57899999999999999999999999999999999999999999999999999999999999876 4555


Q ss_pred             EecC--CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          636 FTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       636 ~~~h--~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      +..+  ...+.+++|+|++. ++++++.|+.|+|||+.++.++..+.. ...|++++|+|++.+|++++.|++|+||+
T Consensus       278 ~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          278 YSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            5433  35789999999988 677899999999999999998888765 67899999999999999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.6e-25  Score=234.96  Aligned_cols=216  Identities=11%  Similarity=0.088  Sum_probs=186.3

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ....+...++++.|++++.               ++++|+.|+.|++|+....                   +.+..+.+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~---------------~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~   72 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGD---------------LLFSCSKDSSASVWYSLNG-------------------ERLGTLDG   72 (369)
T ss_dssp             EEECCSSCEEEEEECTTSC---------------EEEEEESSSCEEEEETTTC-------------------CEEEEECC
T ss_pred             EEEEeeceEEEEEEcCCCC---------------EEEEEeCCCEEEEEeCCCc-------------------hhhhhhhh
Confidence            3455677899999999886               8999999999999954322                   45677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----------------------------------
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----------------------------------  598 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-----------------------------------  598 (725)
                      |...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |..                                   
T Consensus        73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            99999999999999999999999999999998876655543 222                                   


Q ss_pred             -------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885          599 -------------------------WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (725)
Q Consensus       599 -------------------------~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~  653 (725)
                                               .|.+++|+|++++|++++.|+.|++||+++....+..+..|...|.+++|+|++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence                                     6667777777778888888899999999885557888889999999999999988


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCCeEEEE
Q 004885          654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------YISILDVETQVCRLK  719 (725)
Q Consensus       654 ~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--------------~V~IwDl~tg~~v~~  719 (725)
                       +|++++.|+.|++||+++++++..+.....+.+++|+|++.++++++.++              .|++||+.+++++..
T Consensus       232 -~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  310 (369)
T 3zwl_B          232 -YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR  310 (369)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred             -EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence             66788899999999999999999999889999999999999999999888              899999999999999


Q ss_pred             EeCCCC
Q 004885          720 LQVSHS  725 (725)
Q Consensus       720 l~GH~s  725 (725)
                      +.+|.+
T Consensus       311 ~~~~~~  316 (369)
T 3zwl_B          311 VQGHFG  316 (369)
T ss_dssp             EECCSS
T ss_pred             eecccC
Confidence            999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=4.9e-26  Score=246.26  Aligned_cols=214  Identities=14%  Similarity=0.140  Sum_probs=183.1

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|++++.              +++++|+.|+.|++|......                 ......+.+|..
T Consensus        71 ~h~~~v~~~~~~~~~~--------------~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~  119 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHP--------------TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGD  119 (383)
T ss_dssp             CCSSCEEEEEECSSCT--------------TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTC
T ss_pred             CCCCCEEEEEECCCCC--------------CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCC
Confidence            4456789999999872              389999999999999654321                 112223347999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H---~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..|   ...|.+++|+|++.+|++++.|+.|++||++ +. +
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~  196 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-E  196 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-E
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-E
Confidence            999999999 789999999999999999986 555555444   4889999999999999999999999999994 44 7


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC----CeeEEEEecCCCeEEEEEec-CCCEEEEEEcCCeEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYIS  707 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t----~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s~Dg~V~  707 (725)
                      +..+.+|...|.+++|+|++.++|++++.|+.|++||+++    +.++..+.+...|++++|+| ++.+|++++.|+.|+
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            8889999999999999999987888999999999999998    77888888888999999999 999999999999999


Q ss_pred             EEECCCCeEEEEEeCCC
Q 004885          708 ILDVETQVCRLKLQVSH  724 (725)
Q Consensus       708 IwDl~tg~~v~~l~GH~  724 (725)
                      |||+++++++..+.+|.
T Consensus       277 iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             EEETTBTTSCSEEEECC
T ss_pred             EEECCCCcccccccccc
Confidence            99999998888877663

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=8.2e-26  Score=262.31  Aligned_cols=205  Identities=22%  Similarity=0.313  Sum_probs=172.1

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i  561 (725)
                      ...+.|+|+|.               .+++++ ++.|++|...+.                   .....+.+|...|+++
T Consensus        21 ~~~~~~spdg~---------------~l~~~~-~~~v~l~~~~~~-------------------~~~~~~~~h~~~v~~~   65 (611)
T 1nr0_A           21 AVVLGNTPAGD---------------KIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVA   65 (611)
T ss_dssp             CCCCEECTTSS---------------EEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEE
T ss_pred             eeEEeeCCCCC---------------EEEeCC-CCEEEEecCCCc-------------------ccCeEecCCCCceEEE
Confidence            45567888776               788877 579999954322                   3456778999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCe--EEEE--------------------------------------------ecc
Q 004885          562 HFSPDGKLLATGGHDKKAVLWCTESFT--VKST--------------------------------------------LEE  595 (725)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~--------------------------------------------l~~  595 (725)
                      +|+|+|++||+|+.|++|+|||+.+++  ....                                            +.+
T Consensus        66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g  145 (611)
T 1nr0_A           66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG  145 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred             EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence            999999999999999999999985321  1222                                            235


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885          596 HTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (725)
Q Consensus       596 H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~  674 (725)
                      |...|++++|+|++. +|++|+.|++|++||..+.. ++..+.+|...|.+++|+|++. +|++++.|++|++||+.+++
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~  223 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGT  223 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCc
Confidence            666777777777765 58999999999999998766 7888999999999999999988 77899999999999999999


Q ss_pred             eEEEEe--------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          675 CAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       675 ~v~~~~--------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ++..+.        +...|.+++|+|++.+|++++.|++|+|||+++++++.++..+
T Consensus       224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            988883        5678999999999999999999999999999999999988754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=3e-26  Score=250.00  Aligned_cols=199  Identities=15%  Similarity=0.182  Sum_probs=171.3

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ..+++++|+.|+.|++|...                   .......+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~-------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSN-------------------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTT-------------------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEECCCCEEEEeCC-------------------CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            34589999999999999432                   22445667899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEE-------------
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDF-------------  648 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~f-------------  648 (725)
                      .+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++. ++..+..   |...|.+++|             
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  247 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEIST  247 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence            9999999999999999999999999999999999999999999887 6777764   4445555554             


Q ss_pred             --------ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCe-E
Q 004885          649 --------HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG-RILAAAIENYISILDVETQV-C  716 (725)
Q Consensus       649 --------sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg~-~  716 (725)
                              +|++. ++++++.||.|++||++++..+..+..  ...|++++|+|++. +|++++.|+.|+|||+++++ +
T Consensus       248 ~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  326 (420)
T 3vl1_A          248 SKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP  326 (420)
T ss_dssp             CCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             CcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence                    67766 677899999999999999988887764  56799999999998 99999999999999999984 4


Q ss_pred             EEEEeCCC
Q 004885          717 RLKLQVSH  724 (725)
Q Consensus       717 v~~l~GH~  724 (725)
                      +..+.+|+
T Consensus       327 ~~~~~~~~  334 (420)
T 3vl1_A          327 VGEFLINE  334 (420)
T ss_dssp             SEEEEEST
T ss_pred             hhhhhccC
Confidence            78888754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.5e-25  Score=239.29  Aligned_cols=214  Identities=17%  Similarity=0.222  Sum_probs=185.1

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.               ++++|+.|+.|++|....                 ..+..+..+.+|...
T Consensus         7 ~~~~i~~~~~s~~~~---------------~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~~~~h~~~   54 (372)
T 1k8k_C            7 LVEPISCHAWNKDRT---------------QIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQ   54 (372)
T ss_dssp             CSSCCCEEEECTTSS---------------EEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSC
T ss_pred             cCCCeEEEEECCCCC---------------EEEEEeCCCEEEEEeCCC-----------------CcEEeeeeecCCCCc
Confidence            556788999999876               899999999999994322                 223467788899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S  632 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~  632 (725)
                      |++++|+|++++|++++.|+.|++||+++++....  +..|...|.+++|+|++.+|++++.|+.|++||++....   .
T Consensus        55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  134 (372)
T 1k8k_C           55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  134 (372)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence            99999999999999999999999999988775443  467999999999999999999999999999999998762   2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC------------------CCCeeEEEEec-CCCeEEEEEecC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI------------------NNGSCAGVFKC-QSGATQMRFQPR  693 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl------------------~t~~~v~~~~~-~~~V~sv~fspd  693 (725)
                      .....+|...|.+++|+|++. +|++++.|+.|++||+                  ..+.++..+.. ...|.+++|+|+
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  213 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             eeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence            333467889999999999987 6778999999999995                  46778888764 677999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          694 LGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.+|++++.|+.|++||+++++++..+.+|.
T Consensus       214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          214 GSRVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             CCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            9999999999999999999999999999886

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=6.3e-25  Score=230.47  Aligned_cols=213  Identities=17%  Similarity=0.279  Sum_probs=184.7

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEE--ecCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPAS  554 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~H  554 (725)
                      .+...+.++.|++++.               ++++++ |+.|++|.......                ...+..  ..+|
T Consensus        49 ~h~~~v~~~~~~~~~~---------------~l~~~~-dg~i~iw~~~~~~~----------------~~~~~~~~~~~~   96 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTR---------------HVYTGG-KGCVKVWDISHPGN----------------KSPVSQLDCLNR   96 (337)
T ss_dssp             CCSSCCCEEEECSSSS---------------EEEEEC-BSEEEEEETTSTTC----------------CSCSEEEECSCT
T ss_pred             cCCCceEEEEEecCCc---------------EEEEcC-CCeEEEEECCCCCc----------------eeeeecccccCC
Confidence            4566788899998776               888888 99999996644321                111222  2378


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ...|.+++|+|++++|++++.|+.|++||+++++  ....+..|...|++++|+|++++|++++.|+.|++||++++. .
T Consensus        97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~  175 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-L  175 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-E
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-e
Confidence            9999999999999999999999999999999876  667788899999999999999999999999999999999877 7


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      +..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.+...+.+++|+|++.+|++++.|+.|++||++
T Consensus       176 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          176 VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            888899999999999999987 6678889999999999999999999888899999999999999999999999999999


Q ss_pred             CCeEEEEEeCCC
Q 004885          713 TQVCRLKLQVSH  724 (725)
Q Consensus       713 tg~~v~~l~GH~  724 (725)
                      +++.. .+.+|.
T Consensus       255 ~~~~~-~~~~~~  265 (337)
T 1gxr_A          255 KPDKY-QLHLHE  265 (337)
T ss_dssp             SSCEE-EECCCS
T ss_pred             CCCeE-EEcCCc
Confidence            88754 566664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=6.8e-26  Score=248.97  Aligned_cols=222  Identities=14%  Similarity=0.251  Sum_probs=182.9

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC--
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST--  555 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~--  555 (725)
                      ....++++.|++++.               +|++|+.|+.|++|.........        ......+..+..+.+|.  
T Consensus        27 ~~~~V~~v~~s~~g~---------------~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~   83 (447)
T 3dw8_B           27 EADIISTVEFNHSGE---------------LLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPE   83 (447)
T ss_dssp             GGGSEEEEEECSSSS---------------EEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCE
T ss_pred             ccCcEEEEEECCCCC---------------EEEEEcCCCeEEEEEecCCCCCC--------cccccceeEeccccccccc
Confidence            456789999999887               99999999999999765442110        01223455677888998  


Q ss_pred             ----------CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEE---------------------------------
Q 004885          556 ----------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK---------------------------------  590 (725)
Q Consensus       556 ----------~~V~~i~fSpdg--~~LaSgs~Dg~V~IWdl~~~~~i---------------------------------  590 (725)
                                +.|++++|+|++  .+|++++.|++|+|||+.+....                                 
T Consensus        84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  163 (447)
T 3dw8_B           84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM  163 (447)
T ss_dssp             EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred             ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence                      889999999998  79999999999999998764331                                 


Q ss_pred             ------EE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE-------EEecCCCCeEEEEEccCCCeEE
Q 004885          591 ------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       591 ------~~-l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~-------~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                            .. +.+|...|++++|+|++.+|++| .|++|++||+++...++.       .+.+|...|.+++|+|++..+|
T Consensus       164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence                  12 36899999999999999999998 799999999995443444       2568999999999999985588


Q ss_pred             EEEeCCCcEEEEECCCCee----EEEEecCC-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEE
Q 004885          657 CSCDNNSEIRYWSINNGSC----AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRL  718 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~----v~~~~~~~-------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t-g~~v~  718 (725)
                      ++++.||.|++||++++.+    +..+..+.             .|.+++|+|++.+|++++. +.|+|||+++ ++++.
T Consensus       243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            8999999999999999886    67776533             8999999999999999888 9999999998 89999


Q ss_pred             EEeCCC
Q 004885          719 KLQVSH  724 (725)
Q Consensus       719 ~l~GH~  724 (725)
                      .+.+|.
T Consensus       322 ~~~~~~  327 (447)
T 3dw8_B          322 TYQVHE  327 (447)
T ss_dssp             CEESCG
T ss_pred             eeeccc
Confidence            999885

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=3.4e-25  Score=237.56  Aligned_cols=201  Identities=23%  Similarity=0.383  Sum_probs=165.6

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.               ++++|+.|++|++|+...+                   +.+..+.+|...
T Consensus        75 h~~~V~~~~~~~~~~---------------~l~s~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~  120 (343)
T 2xzm_R           75 HNHFVSDLALSQENC---------------FAISSSWDKTLRLWDLRTG-------------------TTYKRFVGHQSE  120 (343)
T ss_dssp             CSSCEEEEEECSSTT---------------EEEEEETTSEEEEEETTSS-------------------CEEEEEECCCSC
T ss_pred             CCCceEEEEECCCCC---------------EEEEEcCCCcEEEEECCCC-------------------cEEEEEcCCCCc
Confidence            444566667766654               8999999999999954322                   456678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCCeEEEEEcCCC----------CEEEEEeCCCeEEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSL----------SRLATSSADRTVRVW  624 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~---~H~~~V~~IafsPd~----------~~Lasgs~DgtIrvW  624 (725)
                      |++++|+|++++|++|+.|++|++||+... ....+.   +|...|.+++|+|++          .+|++++.|++|++|
T Consensus       121 v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  199 (343)
T 2xzm_R          121 VYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW  199 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence            999999999999999999999999999743 333333   788999999999986          789999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEecCCCeEEEEEecCCCEEEEEEcC
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      |.. .. ....+.+|...|.+++|+|++. +|++++.|+.|+|||+. ...+...+.....|.+++|+|++.++ +++.|
T Consensus       200 d~~-~~-~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-a~~~d  275 (343)
T 2xzm_R          200 NTN-FQ-IRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWV-AVGTD  275 (343)
T ss_dssp             ETT-TE-EEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEE-EEEES
T ss_pred             cCC-Cc-eeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEE-EEECC
Confidence            953 33 6778899999999999999988 67799999999999994 45555666666789999999997655 56678


Q ss_pred             CeEEEEECCCCeEE
Q 004885          704 NYISILDVETQVCR  717 (725)
Q Consensus       704 g~V~IwDl~tg~~v  717 (725)
                      +.|+|||+.+++.+
T Consensus       276 ~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          276 QGVKIFNLMTQSKA  289 (343)
T ss_dssp             SCEEEEESSSCCSC
T ss_pred             CCEEEEEeCCCCCC
Confidence            89999999887543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=2.9e-25  Score=233.52  Aligned_cols=189  Identities=15%  Similarity=0.273  Sum_probs=158.1

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl  584 (725)
                      .++++|+.|++|++|+...+                 .+..+..+.+|...|.+++|+|+  +.+|++|+.|++|++||+
T Consensus        68 ~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~  130 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEENG-----------------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF  130 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSSS-----------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred             CEEEEEcCCCEEEEEEcCCC-----------------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence            48999999999999965322                 11234556789999999999997  889999999999999999


Q ss_pred             CCCe--EEEEeccCCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEECCCCCe---eeEEEecCCCCeEEE
Q 004885          585 ESFT--VKSTLEEHTQWITDVRFSPS-------------LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSL  646 (725)
Q Consensus       585 ~~~~--~i~~l~~H~~~V~~IafsPd-------------~~~Lasgs~DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl  646 (725)
                      ++..  ....+.+|...|++++|+|+             +++|++|+.|++|+|||+++...   .+..+.+|...|.+|
T Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v  210 (297)
T 2pm7_B          131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  210 (297)
T ss_dssp             CSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             cCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE
Confidence            8753  24567899999999999996             47999999999999999987552   456788999999999


Q ss_pred             EEccCC--CeEEEEEeCCCcEEEEECCCCe--e-EEEE---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          647 DFHPSK--EDLLCSCDNNSEIRYWSINNGS--C-AGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       647 ~fsP~g--~~llaSgs~Dg~I~IwDl~t~~--~-v~~~---~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      +|+|++  ..+|++++.|++|+|||+++..  . ...+   .+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999996  4688999999999999998743  1 2222   235679999999999999999999999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=2.6e-25  Score=261.47  Aligned_cols=211  Identities=25%  Similarity=0.372  Sum_probs=181.2

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.               ++++|+.|+.|++|+...+                   ..+..+.+|.
T Consensus       427 ~~h~~~v~~v~~s~~g~---------------~l~sgs~Dg~v~vwd~~~~-------------------~~~~~~~~h~  472 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQ---------------FALSGSWDGELRLWDLAAG-------------------VSTRRFVGHT  472 (694)
T ss_dssp             ECCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTT-------------------EEEEEEECCS
T ss_pred             cCCCCcEEEEEECCCCC---------------EEEEEeCCCcEEEEECCCC-------------------cceeEEeCCC
Confidence            34555677777877665               9999999999999954322                   4556788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~--~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      ..|++++|+|++++|++|+.|++|+|||+.........   .+|...|.+++|+|++  ..|++++.|++|++||+++..
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            99999999999999999999999999998765443332   4688999999999986  689999999999999999887


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                       +...+.+|.+.|++|+|+|++. +|++|+.|+.|+|||+++++++..+.....|.+++|+|++.+| +++.|+.|+|||
T Consensus       553 -~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~~~i~iwd  629 (694)
T 3dm0_A          553 -LRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL-CAATEHGIKIWD  629 (694)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE-EEEETTEEEEEE
T ss_pred             -EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE-EEEcCCCEEEEE
Confidence             7889999999999999999988 7789999999999999999999888888889999999996655 455677899999


Q ss_pred             CCCCeEEEEEeCC
Q 004885          711 VETQVCRLKLQVS  723 (725)
Q Consensus       711 l~tg~~v~~l~GH  723 (725)
                      +++++++..+..|
T Consensus       630 ~~~~~~~~~~~~~  642 (694)
T 3dm0_A          630 LESKSIVEDLKVD  642 (694)
T ss_dssp             TTTTEEEEEECCC
T ss_pred             CCCCCChhhhccc
Confidence            9999999888754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=3.2e-26  Score=243.21  Aligned_cols=206  Identities=14%  Similarity=0.175  Sum_probs=170.4

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.               +|++|+.|++|++|+...+                 ....+..+++|.
T Consensus        10 ~~H~~~V~~v~~s~~g~---------------~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGT---------------RLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHE   57 (316)
T ss_dssp             ----CCEEEEEECGGGC---------------EEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCS
T ss_pred             ccccCeEEEeeEcCCCC---------------EEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCC
Confidence            34667889999999886               8999999999999954221                 123456788999


Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004885          556 SKVESCHFSP--DGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      +.|++++|++  ++++|++|+.|++|+|||++++  ..+..+.+|...|++++|+|+  +.+|++|+.|++|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999986  4899999999999999999876  466788899999999999997  789999999999999999876


Q ss_pred             Ce--eeEEEecCCCCeEEEEEccCC----------------CeEEEEEeCCCcEEEEECCCC---eeEEEEec-CCCeEE
Q 004885          630 DY--SLRTFTGHSTTVMSLDFHPSK----------------EDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQ  687 (725)
Q Consensus       630 ~~--~l~~~~~h~~~V~sl~fsP~g----------------~~llaSgs~Dg~I~IwDl~t~---~~v~~~~~-~~~V~s  687 (725)
                      ..  ....+.+|...|.+++|+|+.                ..+|++++.|+.|++||++..   .++..+.. ...|.+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence            42  234567899999999999973                137889999999999999865   35555554 567999


Q ss_pred             EEEecCC----CEEEEEEcCCeEEEEECCC
Q 004885          688 MRFQPRL----GRILAAAIENYISILDVET  713 (725)
Q Consensus       688 v~fspdg----~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ++|+|++    .+|++++.|++|+|||+++
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            9999986    7899999999999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=2.4e-25  Score=242.11  Aligned_cols=209  Identities=18%  Similarity=0.193  Sum_probs=161.7

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      -+.+++|+|||...             .+++|+.|+.|++|+...                   ...+..+. |.+.|++
T Consensus       135 ~~~~v~fSpDg~~l-------------a~as~~~d~~i~iwd~~~-------------------~~~~~~~~-~~~~V~~  181 (365)
T 4h5i_A          135 YTKLVYISREGTVA-------------AIASSKVPAIMRIIDPSD-------------------LTEKFEIE-TRGEVKD  181 (365)
T ss_dssp             CEEEEEECTTSSCE-------------EEEESCSSCEEEEEETTT-------------------TEEEEEEE-CSSCCCE
T ss_pred             CEEEEEEcCCCCEE-------------EEEECCCCCEEEEeECCC-------------------CcEEEEeC-CCCceEE
Confidence            35678899988611             245677899999995432                   23444443 7788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCe---
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDY---  631 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~Dg----tIrvWDl~~~~~---  631 (725)
                      ++|+|||++|++++.| .+++|+..++..+.  ...+|...|.+++|+|++.++++++.|+    ++++||+.....   
T Consensus       182 v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          182 LHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             EEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             EEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence            9999999999999855 56666666665543  3457889999999999999999999887    688999876652   


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      ....+.+|...|++|+|+|+|. +||+|+.|++|+|||+++++++..+.  |...|++|+|+|||.+|++++.|++|+||
T Consensus       261 ~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          261 RSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             EEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             eeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            2356778999999999999998 78899999999999999999998874  46789999999999999999999999999


Q ss_pred             ECCCC--------eEEEEEeCCC
Q 004885          710 DVETQ--------VCRLKLQVSH  724 (725)
Q Consensus       710 Dl~tg--------~~v~~l~GH~  724 (725)
                      |+...        +.+..|+-|+
T Consensus       340 ~ip~~~~~~~s~~~~l~kl~~~~  362 (365)
T 4h5i_A          340 KLPLNYANYTSMKQKISKLEHHH  362 (365)
T ss_dssp             ECCTTTTC---------------
T ss_pred             EcCCCCcCccCccccceeeeccc
Confidence            99643        4455555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=9.4e-25  Score=239.00  Aligned_cols=211  Identities=17%  Similarity=0.298  Sum_probs=184.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.               ++++|+.|+.|++|.....                   +.+..+.+|...
T Consensus       133 ~~~~v~~v~~s~~~~---------------~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~  178 (401)
T 4aez_A          133 ESTYVASVKWSHDGS---------------FLSVGLGNGLVDIYDVESQ-------------------TKLRTMAGHQAR  178 (401)
T ss_dssp             TTCCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSC
T ss_pred             CCCCEEEEEECCCCC---------------EEEEECCCCeEEEEECcCC-------------------eEEEEecCCCCc
Confidence            345566667776554               8999999999999954322                   456677899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      |.+++|  ++++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++.|+.|++||+++.. ++..+
T Consensus       179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~  255 (401)
T 4aez_A          179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTK  255 (401)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEE
T ss_pred             eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEe
Confidence            999999  56899999999999999998 567788899999999999999999999999999999999999877 78888


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVE  712 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs--~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~  712 (725)
                      .+|...|.+++|+|++..++++++  .|+.|++||+++++++..+.+...|.+++|+|++.++++++  .|+.|+|||+.
T Consensus       256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            899999999999999988998876  79999999999999999999888999999999999999965  79999999999


Q ss_pred             CCeEEE--EEeCCCC
Q 004885          713 TQVCRL--KLQVSHS  725 (725)
Q Consensus       713 tg~~v~--~l~GH~s  725 (725)
                      +++...  .+.+|.+
T Consensus       336 ~~~~~~~~~~~~h~~  350 (401)
T 4aez_A          336 SSGLTKQVDIPAHDT  350 (401)
T ss_dssp             TTEEEEEEEEECCSS
T ss_pred             CccceeEEEecCCCC
Confidence            975554  4668753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=6.4e-25  Score=250.00  Aligned_cols=195  Identities=25%  Similarity=0.411  Sum_probs=173.6

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++|+.|+.|++|..                    +.+.+..+.+|...|++++|+|++++|++++.|+.|+|||.
T Consensus       355 ~g~~l~~~~~dg~v~~~~~--------------------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          355 DGQTIASASDDKTVKLWNR--------------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  414 (577)
T ss_dssp             TSSEEEEEETTSEEEEEET--------------------TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CCCEEEEEeCCCEEEEEcC--------------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            3448999999999999942                    11345677899999999999999999999999999999995


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                       +++.+..+.+|...|++++|+|++.+|++++.|++|++||+.. . .+..+.+|...|.+++|+|++. +|++++.|+.
T Consensus       415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~  490 (577)
T 2ymu_A          415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT  490 (577)
T ss_dssp             -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSE
T ss_pred             -CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCE
Confidence             5678889999999999999999999999999999999999753 4 6888999999999999999988 7779999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |+|||. +++++..+.. ...|++|+|+|++.+|++++.|+.|+|||+ +++++.++.||.+
T Consensus       491 i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~  550 (577)
T 2ymu_A          491 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  550 (577)
T ss_dssp             EEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred             EEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence            999995 5778888875 678999999999999999999999999995 7899999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.5e-25  Score=242.46  Aligned_cols=188  Identities=18%  Similarity=0.238  Sum_probs=159.6

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSP-DGKLLATGGHDKKAV  580 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~  580 (725)
                      ..+++|+.|++|++|+...+                   ..+..+     .+|...|.+++|++ ++++|++|+.|++|+
T Consensus       171 ~~l~s~s~D~~i~~wd~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          171 TRLITGSGDQTCVLWDVTTG-------------------QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             SCEEEECTTSCEEEECTTTC-------------------CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             CEEEEECCCCcEEEEEcCCC-------------------cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            45778888888888854332                   122222     57999999999987 889999999999999


Q ss_pred             EEECC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-------CCeEEEEEccCC
Q 004885          581 LWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSK  652 (725)
Q Consensus       581 IWdl~-~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------~~V~sl~fsP~g  652 (725)
                      +||++ ....+..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+..+.       ..|++++|+|+|
T Consensus       232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-EEEEecccccccccccCceEEEEECCCC
Confidence            99997 457788999999999999999999999999999999999999887 666665443       348999999999


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          653 EDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       653 ~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      . ++++|+.||.|+|||+.+++++..+.     +...|++++|+|++.+|++++.|++|+||++...+
T Consensus       311 ~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          311 R-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             S-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             C-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            8 67789999999999999999888773     36679999999999999999999999999998653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.9e-25  Score=232.83  Aligned_cols=207  Identities=15%  Similarity=0.206  Sum_probs=178.5

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|++++.               ++++|+.|+.|++|...                 ......+..+.+|
T Consensus         7 ~~~h~~~v~~~~~s~~~~---------------~l~~~~~dg~i~iw~~~-----------------~~~~~~~~~~~~h   54 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGK---------------RLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGH   54 (379)
T ss_dssp             EEECCCCEEEEEECSSSS---------------EEEEEETTSCEEEEEEE-----------------TTEEEEEEEECCC
T ss_pred             ecCCcccEEEEEEcCCCC---------------EEEEEECCCcEEEEecC-----------------CCcceeeeEecCC
Confidence            345667889999999886               89999999999999442                 1244667788999


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004885          555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~  628 (725)
                      ...|++++|+++  +++|++|+.|+.|+|||+.+++  .+..+..|...|++++|+|+  +.+|++++.|+.|++||+++
T Consensus        55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence            999999999987  8999999999999999999886  77888899999999999998  99999999999999999998


Q ss_pred             CC-eeeEEEecCCCCeEEEEEcc-------------CCCeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeEEEE
Q 004885          629 PD-YSLRTFTGHSTTVMSLDFHP-------------SKEDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMR  689 (725)
Q Consensus       629 ~~-~~l~~~~~h~~~V~sl~fsP-------------~g~~llaSgs~Dg~I~IwDl~t~~----~v~~~~~-~~~V~sv~  689 (725)
                      .. .....+.+|...|.+++|+|             ++. ++++++.|+.|++||++++.    ++..+.. ...|++++
T Consensus       135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             TSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence            74 23456778999999999999             455 77899999999999998764    3344443 67799999


Q ss_pred             EecC---CCEEEEEEcCCeEEEEECCCC
Q 004885          690 FQPR---LGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       690 fspd---g~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |+|+   +.+|++++.|+.|+|||++++
T Consensus       214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          214 WSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            9999   889999999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=4.3e-24  Score=224.09  Aligned_cols=209  Identities=16%  Similarity=0.177  Sum_probs=180.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+..+.|++++.               ++++|+.|+.|++|.....                 .......+..|...
T Consensus        96 ~~~~v~~~~~~~~~~---------------~l~~~~~d~~i~~~d~~~~-----------------~~~~~~~~~~~~~~  143 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGC---------------TLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPA  143 (337)
T ss_dssp             TTSBEEEEEECTTSS---------------EEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSC
T ss_pred             CCCcEEEEEEcCCCC---------------EEEEEcCCCcEEEEECCCC-----------------CcceeeecccCCCc
Confidence            445567777777654               8999999999999955332                 12345667889999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      |.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++++. .+..+ 
T Consensus       144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-  221 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-  221 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-eEeee-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876 45554 


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      .+...+.+++|+|++. ++++++.|+.|++||+++++......+...|.+++|+|++.+|++++.|+.|++||+++++.+
T Consensus       222 ~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          222 DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            4778899999999988 666888899999999999887665556788999999999999999999999999999999887


Q ss_pred             EEEe
Q 004885          718 LKLQ  721 (725)
Q Consensus       718 ~~l~  721 (725)
                      ..+.
T Consensus       301 ~~~~  304 (337)
T 1gxr_A          301 FQSK  304 (337)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-25  Score=243.76  Aligned_cols=218  Identities=12%  Similarity=0.246  Sum_probs=186.5

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|++++.               ++++|+.|+.|++|......               .....+..+.+|..
T Consensus        65 ~~~~~v~~~~~s~~~~---------------~l~~~~~dg~v~vw~~~~~~---------------~~~~~~~~~~~h~~  114 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNK---------------IIAGALDNGSLELYSTNEAN---------------NAINSMARFSNHSS  114 (416)
T ss_dssp             CCSSCEEEEEECSSSS---------------CEEEEESSSCEEEECCSSTT---------------SCCCEEEECCCSSS
T ss_pred             ecCCceEEEEECCCCC---------------eEEEEccCCeEEEeeccccc---------------ccccchhhccCCcc
Confidence            3455788899988776               88999999999999554321               01235677889999


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------EEE---EeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 004885          557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFT------VKS---TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD  625 (725)
Q Consensus       557 ~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~------~i~---~l~~H~~~V~~IafsPd-~~~Lasgs~DgtIrvWD  625 (725)
                      .|++++|+|+ +++|++++.|+.|++||+.+.+      ...   .+..|...|++++|+|+ +.+|++++.|+.|++||
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            9999999998 8999999999999999998876      322   34679999999999998 78999999999999999


Q ss_pred             CCCCCeeeEEEecC------CCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCC-eeEEEEe--cCCCeEEEEEec-
Q 004885          626 TENPDYSLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFK--CQSGATQMRFQP-  692 (725)
Q Consensus       626 l~~~~~~l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~-~~v~~~~--~~~~V~sv~fsp-  692 (725)
                      ++++. ++..+..|      ...|.+++|+|++..++++++.|+   .|++||++++ .++..+.  +...|++++|+| 
T Consensus       195 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (416)
T 2pm9_A          195 LKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ  273 (416)
T ss_dssp             TTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS
T ss_pred             CCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC
Confidence            99877 67777766      788999999999877888999998   9999999986 6667776  467899999999 


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          693 RLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       693 dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ++.+|++++.|+.|+|||+++++++..+.+|.+
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~  306 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN  306 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred             CCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence            889999999999999999999999999999863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=4.7e-25  Score=241.00  Aligned_cols=219  Identities=16%  Similarity=0.192  Sum_probs=180.9

Q ss_pred             cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ..+...+.++.|+| ++.               ++++|+.|+.|++|.........            .....+..+.+|
T Consensus        78 ~~h~~~V~~~~~~p~~~~---------------~l~s~s~dg~v~vw~~~~~~~~~------------~~~~~~~~~~~h  130 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDN---------------VIASGSEDCTVMVWEIPDGGLVL------------PLREPVITLEGH  130 (402)
T ss_dssp             CCCSSCEEEEEECTTCTT---------------EEEEEETTSEEEEEECCTTCCSS------------CBCSCSEEEECC
T ss_pred             ecCCCCEEEEEeCCCCCC---------------EEEEEeCCCeEEEEEccCCCCcc------------ccCCceEEecCC
Confidence            34566778888888 554               89999999999999765542111            111345677899


Q ss_pred             CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       555 ~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+  .+|...|++++|+|++.+|++++.|+.|++||++++. 
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-  209 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-  209 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-
Confidence            9999999999998 69999999999999999999999999  8899999999999999999999999999999999887 


Q ss_pred             eeEEE-ecCCCC-eEEEEEccCCCeEEEEE---eCCCcEEEEECCCCee-E--EEEecCCCeEEEEEecCCCEEEEEE-c
Q 004885          632 SLRTF-TGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSC-A--GVFKCQSGATQMRFQPRLGRILAAA-I  702 (725)
Q Consensus       632 ~l~~~-~~h~~~-V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~~-v--~~~~~~~~V~sv~fspdg~~Lla~s-~  702 (725)
                      .+..+ .+|.+. +.++.|+|++. +++++   +.|+.|++||++++.. +  ..+.+...+.+++|+|++.+|++++ .
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             eeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence            67777 688776 89999999976 67777   6899999999998654 3  3333467899999999999997666 5


Q ss_pred             CCeEEEEECCCCeE-EEEEeCC
Q 004885          703 ENYISILDVETQVC-RLKLQVS  723 (725)
Q Consensus       703 Dg~V~IwDl~tg~~-v~~l~GH  723 (725)
                      |+.|+|||+++++. +..+.+|
T Consensus       289 dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          289 DSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             CSCEEEEEECSSTTCEEEEEEE
T ss_pred             CCeEEEEEecCCCcceEeeccc
Confidence            99999999999873 5555544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-24  Score=234.57  Aligned_cols=208  Identities=19%  Similarity=0.283  Sum_probs=184.0

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...+.++.|++++.               ++++|+.|+.|++|.                    .....+..+.+|...|
T Consensus       108 ~~~v~~~~~s~~~~---------------~l~~~~~dg~i~i~~--------------------~~~~~~~~~~~~~~~v  152 (425)
T 1r5m_A          108 TNQVTCLAWSHDGN---------------SIVTGVENGELRLWN--------------------KTGALLNVLNFHRAPI  152 (425)
T ss_dssp             CBCEEEEEECTTSS---------------EEEEEETTSCEEEEE--------------------TTSCEEEEECCCCSCE
T ss_pred             CCceEEEEEcCCCC---------------EEEEEeCCCeEEEEe--------------------CCCCeeeeccCCCccE
Confidence            44778888888776               899999999999994                    1123556778999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----------------------------------------------
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----------------------------------------------  591 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-----------------------------------------------  591 (725)
                      .+++|+|++++|++++.|+.|++||+.+++.+.                                               
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  232 (425)
T 1r5m_A          153 VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVY  232 (425)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEE
T ss_pred             EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEE
Confidence            999999999999999999999999997765443                                               


Q ss_pred             ---------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC
Q 004885          592 ---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (725)
Q Consensus       592 ---------~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D  662 (725)
                               .+..|...|++++|+|++.+|++++.|+.|++||+++.. ++..+.+|...|.+++|+|++  ++++++.|
T Consensus       233 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d  309 (425)
T 1r5m_A          233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMD  309 (425)
T ss_dssp             ETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETT
T ss_pred             EcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCC
Confidence                     334678889999999999999999999999999999877 788888999999999999998  67789999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------------EEEEEe
Q 004885          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------------CRLKLQ  721 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~--------------------~v~~l~  721 (725)
                      +.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|+|||+++++                    ++..+.
T Consensus       310 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (425)
T 1r5m_A          310 GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ  389 (425)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC
T ss_pred             CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc
Confidence            9999999999999988886 6789999999999999999999999999999988                    999999


Q ss_pred             CCC
Q 004885          722 VSH  724 (725)
Q Consensus       722 GH~  724 (725)
                      +|.
T Consensus       390 ~~~  392 (425)
T 1r5m_A          390 SSQ  392 (425)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=2.6e-24  Score=228.29  Aligned_cols=221  Identities=19%  Similarity=0.252  Sum_probs=178.0

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecC
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (725)
                      ....+...+.++.|+|+..            ...++++|+.|+.|++|.....                 .......+.+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~-----------------~~~~~~~~~~   84 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDS-----------------GQTIPKAQQM   84 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTT-----------------SCEEEEEEEE
T ss_pred             eccCCCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCC-----------------CceeEEEecc
Confidence            4556778899999999741            0138999999999999955431                 1123366778


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Iaf--sPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      |...|++++|+|++++|++++.|+.|+|||+++++.+. +..|...|++++|  +|++.+|++++.|+.|++||++++. 
T Consensus        85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-  162 (368)
T 3mmy_A           85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-  162 (368)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-
T ss_pred             ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-
Confidence            99999999999999999999999999999999988776 5679999999999  8899999999999999999999876 


Q ss_pred             eeEEEecCC-----------------------------------------CCeEEEEEccCCC---eEEEEEeCCCcEEE
Q 004885          632 SLRTFTGHS-----------------------------------------TTVMSLDFHPSKE---DLLCSCDNNSEIRY  667 (725)
Q Consensus       632 ~l~~~~~h~-----------------------------------------~~V~sl~fsP~g~---~llaSgs~Dg~I~I  667 (725)
                      ++..+..+.                                         ..+.++++.++..   ..+++++.|+.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            455444332                                         2234444444332   23778999999999


Q ss_pred             EECCCC---eeEEEEecCC-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          668 WSINNG---SCAGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       668 wDl~t~---~~v~~~~~~~-------------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ||++..   ..+..+..+.             .|++++|+|++.+|++++.|+.|+|||+++++++..+.+|.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence            999987   4566666533             699999999999999999999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.1e-24  Score=247.95  Aligned_cols=181  Identities=25%  Similarity=0.433  Sum_probs=161.4

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ..+++++|+.|+.|++|..                    ..+.+..+.+|...|++++|+||+++|++++.|++|++||.
T Consensus       396 dg~~l~~~~~d~~v~~~~~--------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          396 DGQTIASASDDKTVKLWNR--------------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR  455 (577)
T ss_dssp             TSSCEEEEETTSEEEEECT--------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEeC--------------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            3348999999999999932                    11345677899999999999999999999999999999996


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                       +++.+..+.+|...|++++|+|++++|++++.|++|++||.. +. ++..+.+|...|++|+|+|+++ +|++++.|+.
T Consensus       456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~-~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~  531 (577)
T 2ymu_A          456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT  531 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSE
T ss_pred             -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC-EEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCE
Confidence             567788899999999999999999999999999999999964 44 7889999999999999999998 6678999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      |+|||. +++++..+.. ...|++++|+||+++|++++.|++|+|||
T Consensus       532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          532 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999996 5788888775 67899999999999999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=1.3e-24  Score=257.89  Aligned_cols=216  Identities=20%  Similarity=0.288  Sum_probs=194.0

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..++..+.++.|+|++.               ++++|+.|+.|++|+...                   ...+..+.+|.
T Consensus        10 ~~h~~~v~~i~~sp~~~---------------~la~~~~~g~v~iwd~~~-------------------~~~~~~~~~~~   55 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEP---------------WVLTTLYSGRVEIWNYET-------------------QVEVRSIQVTE   55 (814)
T ss_dssp             EEECSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTT-------------------TEEEEEEECCS
T ss_pred             ecCCCceEEEEECCCCC---------------EEEEEeCCCEEEEEECCC-------------------CceEEEEecCC
Confidence            34566789999999887               899999999999995422                   24567788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      +.|++++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||+.++......
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988657888


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEEC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDV  711 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl  711 (725)
                      +.+|...|.+++|+|+...++++++.||.|++||++++.....+..  ...+.+++|+|  ++.+|++++.|+.|++||+
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9999999999999994344788999999999999998888777765  37899999999  8999999999999999999


Q ss_pred             CCCeEEEEEeCCCC
Q 004885          712 ETQVCRLKLQVSHS  725 (725)
Q Consensus       712 ~tg~~v~~l~GH~s  725 (725)
                      ++++++..+.+|.+
T Consensus       216 ~~~~~~~~~~~~~~  229 (814)
T 3mkq_A          216 QTKSCVATLEGHMS  229 (814)
T ss_dssp             TTTEEEEEEECCSS
T ss_pred             CCCcEEEEEcCCCC
Confidence            99999999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=2.1e-25  Score=243.39  Aligned_cols=202  Identities=17%  Similarity=0.232  Sum_probs=170.5

Q ss_pred             EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE
Q 004885          484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF  563 (725)
Q Consensus       484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f  563 (725)
                      .+.|+|++.               ++++|+.|+.|++|......                   ....+..| ..+.+..|
T Consensus        61 ~~~~s~~g~---------------~l~~~~~d~~v~i~d~~~~~-------------------~~~~~~~~-~~~~~~~~  105 (420)
T 3vl1_A           61 GNTFEKVGS---------------HLYKARLDGHDFLFNTIIRD-------------------GSKMLKRA-DYTAVDTA  105 (420)
T ss_dssp             TCEEEEEET---------------TEEEEEETTEEEEEECCSEE-------------------TTTTSCSC-CEEEEEEE
T ss_pred             ceeeeecCC---------------eEEEEEcCCcEEEEEecccc-------------------eeeEEecC-CceEEEEE
Confidence            456777665               78999999999999543321                   11122233 33556678


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885          564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (725)
Q Consensus       564 Spdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V  643 (725)
                      ++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++++. ++..+.+|...|
T Consensus       106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v  184 (420)
T 3vl1_A          106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATV  184 (420)
T ss_dssp             CSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCE
T ss_pred             ecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcE
Confidence            9999999999999999999999999998889999999999999999999999999999999999887 788899999999


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEE---------------------EEEecCCCEEE
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQ---------------------MRFQPRLGRIL  698 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~s---------------------v~fspdg~~Ll  698 (725)
                      .+++|+|++. +|++++.|+.|++||+++++++..+..    ...|.+                     ++|+|++.+|+
T Consensus       185 ~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          185 TDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            9999999988 667999999999999999999988863    233444                     45578888999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEeC
Q 004885          699 AAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +++.|+.|+|||+++++.+..+..
T Consensus       264 ~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          264 AGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEcCCCeEEEEECCCCceeEEccc
Confidence            999999999999999988887764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.4e-25  Score=241.78  Aligned_cols=218  Identities=12%  Similarity=0.142  Sum_probs=178.0

Q ss_pred             cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ..+...+.++.|++ ++.               ++++|+.|+.|++|......             .+..+.....+ +|
T Consensus        60 ~~h~~~V~~~~~s~~~~~---------------~l~s~s~dg~v~vwd~~~~~-------------~~~~~~~~~~~-~h  110 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETP---------------YLITGSDQGVIKIWNLKEII-------------VGEVYSSSLTY-DC  110 (437)
T ss_dssp             TTTTSCEEEEEEECSSSC---------------EEEEEETTSEEEEEEHHHHH-------------TTCCCSCSEEE-EC
T ss_pred             cCCCCceEEEEECCCCCC---------------EEEEecCCceEEEeECcccc-------------cCcccceeeec-cC
Confidence            44567899999999 776               99999999999999543210             01111222222 48


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEecc------------CCCCeEEEE--EcCCCCEEEEEeC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEE------------HTQWITDVR--FSPSLSRLATSSA  617 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~---~~~~i~~l~~------------H~~~V~~Ia--fsPd~~~Lasgs~  617 (725)
                      ...|++++|+|++++|++|+.|++|+|||++   +++.+..+..            +...+.++.  +++++.+|++++.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            9999999999999999999999999999994   4544443322            456677777  5678999999999


Q ss_pred             CCeEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEec-
Q 004885          618 DRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP-  692 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fsp-  692 (725)
                      |++|++||+++.. ++..+.+  |...|++++|+|++. +|++++.||.|++||++++.++..+.  +...|++++|+| 
T Consensus       191 d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          191 LSRVIIFDIRTLE-RLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             TSEEEEEETTTCC-EEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             CCeEEEEeCCCCe-eeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            9999999999988 7888887  889999999999977 77799999999999999999999885  356799997665 


Q ss_pred             ---CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          693 ---RLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       693 ---dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                         ++.+|++++.|+.|+|||+++++++..+.+|.
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD  303 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence               56688899999999999999999999999885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.2e-24  Score=235.18  Aligned_cols=216  Identities=15%  Similarity=0.140  Sum_probs=179.0

Q ss_pred             CCCCCeeEEEEecC----CCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          477 NGASSKSLLMFGSD----GMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       477 s~s~~~s~l~fs~d----g~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .+...+.++.|+++    +.            ...++++++.|+.|++|.......              .....+..+.
T Consensus        60 ~h~~~v~~~~~~~~~~~~g~------------~~~~l~s~~~dg~i~iw~~~~~~~--------------~~~~~~~~~~  113 (397)
T 1sq9_A           60 VHKSGLHHVDVLQAIERDAF------------ELCLVATTSFSGDLLFYRITREDE--------------TKKVIFEKLD  113 (397)
T ss_dssp             CCTTCEEEEEEEEEEETTTE------------EEEEEEEEETTSCEEEEEEEECTT--------------TCCEEEEEEC
T ss_pred             cCCCcEEEEEEecccccCCc------------cccEEEEEcCCCCEEEEEccCCcc--------------cccccceeec
Confidence            45556788888876    40            003899999999999995433310              1112256677


Q ss_pred             CC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CeEEE-----Ee-------ccCCCCeEEEE
Q 004885          553 AS-----TSKVESCHFS----PDGKL-LATGGHDKKAVLWCTES------FTVKS-----TL-------EEHTQWITDVR  604 (725)
Q Consensus       553 ~H-----~~~V~~i~fS----pdg~~-LaSgs~Dg~V~IWdl~~------~~~i~-----~l-------~~H~~~V~~Ia  604 (725)
                      .|     ...|.+++|+    |++++ |++++.|+.|++||+.+      ++.+.     .+       ..|...|++++
T Consensus       114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  193 (397)
T 1sq9_A          114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD  193 (397)
T ss_dssp             CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEE
T ss_pred             ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEE
Confidence            78     5899999999    99999 99999999999999987      55555     66       45899999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---C---CCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCee
Q 004885          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---H---STTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC  675 (725)
Q Consensus       605 fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h---~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~~  675 (725)
                      |+|++ +|++++.|+.|++||+++.. ++..+..   |   ...|.+++|+|++. +|++++.|   +.|++||++++++
T Consensus       194 ~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          194 ISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             ECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ECCCc-eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcc
Confidence            99999 99999999999999999876 7888888   8   99999999999988 66688888   9999999999999


Q ss_pred             EEEEe--------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          676 AGVFK--------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       676 v~~~~--------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +..+.              +...|.+++|+|++.+|++++.|+.|+|||+++++++..+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            98887              46779999999999999999999999999999999999999

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=9.8e-25  Score=235.86  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=184.0

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|++  .               ++++|+.|+.|++|.......             ...+..+..+.+|
T Consensus        12 ~~~h~~~i~~~~~~~--~---------------~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h   61 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--S---------------FTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVH   61 (397)
T ss_dssp             SSCSSSCEEEEEECS--S---------------EEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECC
T ss_pred             hhhhhcCeEEEEecC--C---------------eEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecC
Confidence            345667888888876  2               899999999999996644321             1123456677899


Q ss_pred             CCCeEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccC-----CCCeEEEEEc----CCCCE-E
Q 004885          555 TSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-L  612 (725)
Q Consensus       555 ~~~V~~i~fSpd----g---~~LaSgs~Dg~V~IWdl~~~~~-----i~~l~~H-----~~~V~~Iafs----Pd~~~-L  612 (725)
                      ...|++++|+|+    +   ++|++++.|+.|++||+.+++.     +..+..|     ...|.+++|+    |++.+ |
T Consensus        62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence            999999999999    9   9999999999999999988776     8888888     5899999999    99999 9


Q ss_pred             EEEeCCCeEEEEECCC------CCeeeE-----EE-------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe
Q 004885          613 ATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (725)
Q Consensus       613 asgs~DgtIrvWDl~~------~~~~l~-----~~-------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~  674 (725)
                      ++++.|+.|++||+++      .. .+.     .+       ..|...|.+++|+|++  ++++++.|+.|++||+++++
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE
T ss_pred             EEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc
Confidence            9999999999999998      54 344     66       4488999999999998  77799999999999999999


Q ss_pred             eEEEEec-------CCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeC
Q 004885          675 CAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQV  722 (725)
Q Consensus       675 ~v~~~~~-------~~~V~sv~fspdg~~Lla~s~D---g~V~IwDl~tg~~v~~l~G  722 (725)
                      ++..+..       ...|.+++|+|++.+|++++.|   +.|++||+++++++..+.+
T Consensus       219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  276 (397)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence            9999886       7789999999999999999999   9999999999999999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=8.5e-25  Score=232.22  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=178.0

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.           ....++++|+.|+.|++|....                   .+.+..+.+|...
T Consensus        68 ~~~~v~~~~~~~~~~-----------~~~~~l~~~~~dg~i~v~d~~~-------------------~~~~~~~~~~~~~  117 (366)
T 3k26_A           68 ADENFYTCAWTYDSN-----------TSHPLLAVAGSRGIIRIINPIT-------------------MQCIKHYVGHGNA  117 (366)
T ss_dssp             TTCCEEEEEEEECTT-----------TCCEEEEEEETTCEEEEECTTT-------------------CCEEEEEESCCSC
T ss_pred             CCCcEEEEEeccCCC-----------CCCCEEEEecCCCEEEEEEchh-------------------ceEeeeecCCCCc
Confidence            345677888888643           1235899999999999994322                   2456677899999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       558 V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      |++++|+| ++++|++|+.|+.|+|||+++++.+..+   .+|...|++++|+|++.+|++++.|+.|++||++++. .+
T Consensus       118 i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~  196 (366)
T 3k26_A          118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR-MM  196 (366)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH-HH
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc-cc
Confidence            99999999 9999999999999999999999999888   7899999999999999999999999999999998754 22


Q ss_pred             ----------------------------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----------
Q 004885          634 ----------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----------  675 (725)
Q Consensus       634 ----------------------------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----------  675 (725)
                                                  ....+|...|.+++|+  +. ++++++.|+.|++||++++..          
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  273 (366)
T 3k26_A          197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSES  273 (366)
T ss_dssp             HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred             cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCc
Confidence                                        2233489999999999  44 788999999999999987643          


Q ss_pred             ----EEEEec-CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCe----EEEEEeCC
Q 004885          676 ----AGVFKC-QSGATQMRFQPR--LGRILAAAIENYISILDVETQV----CRLKLQVS  723 (725)
Q Consensus       676 ----v~~~~~-~~~V~sv~fspd--g~~Lla~s~Dg~V~IwDl~tg~----~v~~l~GH  723 (725)
                          +..+.. ...|++++|+|+  +.+|++++.|+.|+|||+++++    .+..+.+|
T Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  332 (366)
T 3k26_A          274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH  332 (366)
T ss_dssp             CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT
T ss_pred             chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc
Confidence                555554 667999999999  9999999999999999999974    56688887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=5.6e-25  Score=233.63  Aligned_cols=201  Identities=18%  Similarity=0.326  Sum_probs=162.8

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWd  583 (725)
                      ..+|++|+.|++|++|+...+                 .+..+..+.+|...|.+++|+|+  +.+|++|+.|++|++||
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENG-----------------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSS-----------------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             CCEEEEEECCCEEEEEECCCC-----------------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence            358999999999999954321                 12345567899999999999997  78999999999999999


Q ss_pred             CCCCe---EEEEeccCCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEECCCCC--eeeEEEecCCC
Q 004885          584 TESFT---VKSTLEEHTQWITDVRFSPS-----------------LSRLATSSADRTVRVWDTENPD--YSLRTFTGHST  641 (725)
Q Consensus       584 l~~~~---~i~~l~~H~~~V~~IafsPd-----------------~~~Lasgs~DgtIrvWDl~~~~--~~l~~~~~h~~  641 (725)
                      ++...   ....+.+|...|.+++|+|+                 +.+|++|+.|++|++||++...  .++..+.+|..
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            98753   23456789999999999997                 3689999999999999997553  25677889999


Q ss_pred             CeEEEEEccCC---CeEEEEEeCCCcEEEEECCCC---e-eEEEE-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004885          642 TVMSLDFHPSK---EDLLCSCDNNSEIRYWSINNG---S-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       642 ~V~sl~fsP~g---~~llaSgs~Dg~I~IwDl~t~---~-~v~~~-~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      .|.+++|+|++   ..+|++++.|++|+|||+++.   . ....+ .+...|.+++|+|++.+|++++.|++|+||+...
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99999999986   248889999999999999862   1 11222 3467899999999999999999999999999863


Q ss_pred             -C--eEEEEEeCC
Q 004885          714 -Q--VCRLKLQVS  723 (725)
Q Consensus       714 -g--~~v~~l~GH  723 (725)
                       +  .++..+...
T Consensus       294 ~g~~~~~~~~~~~  306 (316)
T 3bg1_A          294 DGQWVCISDVNKG  306 (316)
T ss_dssp             TSCEEEEEECC--
T ss_pred             CCcEEEeeeccCC
Confidence             3  677766543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=1.1e-23  Score=233.58  Aligned_cols=195  Identities=16%  Similarity=0.288  Sum_probs=174.1

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      ++++|+.|+.|++|+...                   .+.+..+.+|.+.|++++|++++ +|++|+.|++|++||++++
T Consensus       134 ~l~sgs~dg~i~vwd~~~-------------------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~  193 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSIN-------------------KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG  193 (464)
T ss_dssp             EEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred             EEEEEcCCCcEEEEECCC-------------------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence            899999999999995422                   25677788999999999999988 9999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCe----------------------eeEEEecCCCCe
Q 004885          588 TVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDY----------------------SLRTFTGHSTTV  643 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~Iafs--Pd~~~Lasgs~DgtIrvWDl~~~~~----------------------~l~~~~~h~~~V  643 (725)
                      +.+..+.+|...|.+++|+  +++.+|++++.|++|++||+++...                      .+..+.+|...|
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  273 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  273 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence            9999999999999999998  4778999999999999999987652                      255778899999


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .++.  +++. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++++++..+.+
T Consensus       274 ~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          274 RTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             EEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            8874  5555 777999999999999999999998875 67899999999999999999999999999999999999999


Q ss_pred             CCC
Q 004885          723 SHS  725 (725)
Q Consensus       723 H~s  725 (725)
                      |.+
T Consensus       351 h~~  353 (464)
T 3v7d_B          351 HTA  353 (464)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-23  Score=228.09  Aligned_cols=219  Identities=13%  Similarity=0.229  Sum_probs=178.9

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecC----CCCCCCCCccccccccCCCceeeeEEEe
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQLI  551 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~l  551 (725)
                      +.+...+.++.|+|++.              .++++|+.|+.|++|..    ..+...             ..+.....+
T Consensus        42 ~~~~~~v~~~~~s~~~~--------------~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~   94 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDE--------------SILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAEL   94 (425)
T ss_dssp             EEECSCCSEEEECSSCT--------------TEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEE
T ss_pred             eeccCceEEEEECCCCC--------------cEEEEecCCceEEEEEEecccCCcccc-------------ccccccccc
Confidence            33445778888988764              38899999999999966    332100             001111222


Q ss_pred             ----------cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          552 ----------PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       552 ----------~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                                .+|.+.|++++|+|++++|++|+.|+.|+||| .+++.+..+..|...|++++|+|++.+|++++.|+.|
T Consensus        95 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (425)
T 1r5m_A           95 RHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVT  173 (425)
T ss_dssp             ECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             cccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeE
Confidence                      23788999999999999999999999999999 6778888999999999999999999999999999999


Q ss_pred             EEEECCCCCe-------------------------------------------------------eeEEEecCCCCeEEE
Q 004885          622 RVWDTENPDY-------------------------------------------------------SLRTFTGHSTTVMSL  646 (725)
Q Consensus       622 rvWDl~~~~~-------------------------------------------------------~l~~~~~h~~~V~sl  646 (725)
                      ++||+.++..                                                       .+..+..|...|.++
T Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred             EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence            9999976531                                                       122445678899999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|+|++ .+++++.|+.|++||+++++++..+.+|.
T Consensus       254 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  330 (425)
T 1r5m_A          254 EFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG  330 (425)
T ss_dssp             EEETTTT-EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred             EECCCCC-EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence            9999988 677888999999999999998888874 6789999999998 99999999999999999999999999885

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=230.43  Aligned_cols=216  Identities=15%  Similarity=0.256  Sum_probs=178.7

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeC---CCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~---D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      ..+...+.++.|+|++.              .++++|+.   |+.|++|....+.                 ... ....
T Consensus        15 ~~h~~~v~~~~~~p~~~--------------~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~~-~~~~   62 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSA--------------KFVTMGNFARGTGVIQLYEIQHGD-----------------LKL-LREI   62 (357)
T ss_dssp             EECSSCEEEEEECTTSS--------------EEEEEEC--CCCEEEEEEEECSSS-----------------EEE-EEEE
T ss_pred             cCCCCceEEEEEcCCCc--------------eEEEecCccCCCcEEEEEeCCCCc-----------------ccc-eeee
Confidence            34677889999999775              47788887   9999999553321                 111 1223


Q ss_pred             CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCCeEEEEE------cCCCCEEEEEeCCCeEE
Q 004885          553 ASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVR  622 (725)
Q Consensus       553 ~H~~~V~~i~fSpd---g~~LaSgs~Dg~V~IWdl~~~~-~i~~l~~H~~~V~~Iaf------sPd~~~Lasgs~DgtIr  622 (725)
                      +|...|++++|+|+   +++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|      +|++.+|++++.|++|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            78899999999998   6999999999999999999887 88899999999999965      67899999999999999


Q ss_pred             EEECCCCCeeeEEEecCCC----CeEEEE----EccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEec--
Q 004885          623 VWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP--  692 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~----~V~sl~----fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp--  692 (725)
                      +||++++..++..+..|.+    .|.+++    |+|++. ++++++.|+.|++||+++++++....+...|.+++|+|  
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD  221 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence            9999988756777766655    799998    677877 77789999999999999999888877788999999999  


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCCeEEEEEe-----CCC
Q 004885          693 -RLGRILAAAIENYISILDVETQVCRLKLQ-----VSH  724 (725)
Q Consensus       693 -dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~-----GH~  724 (725)
                       ++.+|++++.|+.|++||+++++++..+.     +|.
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  259 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK  259 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc
Confidence             89999999999999999999876555444     775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=2.8e-24  Score=232.39  Aligned_cols=211  Identities=18%  Similarity=0.124  Sum_probs=168.5

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+..+.|+|++              ..++++++.|+.|++|+...                 .....+.....|..
T Consensus       116 ~h~~~v~~~~~~~~~--------------~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~  164 (383)
T 3ei3_B          116 GPGDAITGMKFNQFN--------------TNQLFVSSIRGATTLRDFSG-----------------SVIQVFAKTDSWDY  164 (383)
T ss_dssp             STTCBEEEEEEETTE--------------EEEEEEEETTTEEEEEETTS-----------------CEEEEEECCCCSSC
T ss_pred             CcCCceeEEEeCCCC--------------CCEEEEEeCCCEEEEEECCC-----------------CceEEEeccCCCCC
Confidence            355677888888732              13899999999999995431                 12233333345668


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC---ee
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD---YS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~---~~  632 (725)
                      .|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|++. +|++++.|++|++||+++..   .+
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  243 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY  243 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence            8999999999999999999999999999 5778889999999999999999998 99999999999999999732   24


Q ss_pred             eEEEecCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------------------CCeEEEEEecC
Q 004885          633 LRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------SGATQMRFQPR  693 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------------------~~V~sv~fspd  693 (725)
                      +..+ +|...|.+++|+| ++. +|++++.|+.|++||++++.++..+..+                  ..+..++|+|+
T Consensus       244 ~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d  321 (383)
T 3ei3_B          244 IAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD  321 (383)
T ss_dssp             EEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred             EEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCC
Confidence            4555 7999999999999 877 6778899999999999988776666521                  22334555555


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          694 LGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +.+  +++.|+.|+|||+++++++..+.+|
T Consensus       322 g~~--s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          322 DQL--LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             TTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             ccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence            544  5567999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=3.1e-24  Score=227.89  Aligned_cols=221  Identities=19%  Similarity=0.257  Sum_probs=179.2

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-  551 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  551 (725)
                      .+...+...+.++.|+|+..           +....+++++.++.|++|....+                .....+... 
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~-----------~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~   64 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSK-----------EGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYV   64 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCC-----------TTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccC-----------CCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeecc
Confidence            34456778899999998622           11235555666679999954322                112222222 


Q ss_pred             -cCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004885          552 -PASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (725)
Q Consensus       552 -~~H~~~V~~i~fSpd----g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWD  625 (725)
                       ..|...|++++|+|+    +++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+| ++.+|++++.|++|++||
T Consensus        65 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence             247889999999998    67999999999999999999999999999999999999999 899999999999999999


Q ss_pred             CCCCCeeeEEE---ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----------------------
Q 004885          626 TENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------  680 (725)
Q Consensus       626 l~~~~~~l~~~---~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----------------------  680 (725)
                      ++++. .+..+   .+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.                      
T Consensus       145 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          145 IQTDT-LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             TTTTE-EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             eecCe-EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            99877 67777   68999999999999987 66788899999999999876543332                      


Q ss_pred             -------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEEeCCC
Q 004885          681 -------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQVSH  724 (725)
Q Consensus       681 -------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~--------------~v~~l~GH~  724 (725)
                             +...|.+++|+  +.+|++++.|+.|++||++++.              ++..+.+|.
T Consensus       223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                   46779999999  5799999999999999998874              488888875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=2.2e-23  Score=229.76  Aligned_cols=200  Identities=19%  Similarity=0.351  Sum_probs=177.3

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      .+.++++|+.|+.|++|....                   .+.+..+.+|...|.++.|  ++.+|++|+.|+.+++||.
T Consensus       158 dg~~lasgs~Dg~v~iWd~~~-------------------~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~  216 (420)
T 4gga_A          158 EGNYLAVGTSSAEVQLWDVQQ-------------------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV  216 (420)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEECCCeEEEEEcCC-------------------CcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeee
Confidence            345999999999999995432                   2567788899999999988  4689999999999999998


Q ss_pred             CC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---eeeEEEecCCCCeEEEEEccCCCeEEEEE-
Q 004885          585 ES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSC-  659 (725)
Q Consensus       585 ~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g~~llaSg-  659 (725)
                      .. ...+.++.+|...+.++.|+|++.++++++.|+.|++||+.++.   ..+..+..|...|.+++|+|.+..+++++ 
T Consensus       217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~  296 (420)
T 4gga_A          217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  296 (420)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence            76 55677889999999999999999999999999999999998765   24567788999999999999988888765 


Q ss_pred             -eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEEeCCCC
Q 004885          660 -DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       660 -s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                       +.|++|+|||+.++.++..+..+..+.++.|++++..+++++  .|+.|+|||+.+++++.+|.||.+
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~  365 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS  365 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred             ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence             478999999999999999999999999999999999998876  589999999999999999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=2.5e-24  Score=238.47  Aligned_cols=225  Identities=15%  Similarity=0.227  Sum_probs=184.5

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+..+.|+|++.              .++++|+.|+.|++|..........         .......+..+.+|..
T Consensus       126 ~h~~~v~~l~~~p~~~--------------~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~  182 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNA--------------CVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQK  182 (430)
T ss_dssp             EESSCCSEEEEETTEE--------------EEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSS
T ss_pred             cCCCcEEEEEECCCCC--------------cEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCC
Confidence            3445677788887522              4899999999999996543211100         0112345667789999


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-------EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTV-------KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~-------i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~  627 (725)
                      .|++++|+|++. +|++|+.||+|+|||+..+..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||++
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            999999999988 999999999999999987321       456778999999999999 68899999999999999999


Q ss_pred             CCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeEEEEEecCCC-EEEEEEc
Q 004885          628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAI  702 (725)
Q Consensus       628 ~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v~~~~~-~~~V~sv~fspdg~-~Lla~s~  702 (725)
                      +..  .++..+..|...|++|+|+|++.++|++|+.||.|++||+++ ..++..+.. ...|++++|+|++. .|++++.
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence            873  367788899999999999999988899999999999999998 566777764 77899999999985 5888888


Q ss_pred             CCeEEEEECCC--------------CeEEEEEeCCC
Q 004885          703 ENYISILDVET--------------QVCRLKLQVSH  724 (725)
Q Consensus       703 Dg~V~IwDl~t--------------g~~v~~l~GH~  724 (725)
                      |+.|+|||+.+              .+++..+.+|.
T Consensus       343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~  378 (430)
T 2xyi_A          343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  378 (430)
T ss_dssp             TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS
T ss_pred             CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC
Confidence            99999999987              47788888885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.9e-25  Score=252.12  Aligned_cols=204  Identities=10%  Similarity=0.079  Sum_probs=162.4

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC------CCEEEEEeCCCcE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKA  579 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd------g~~LaSgs~Dg~V  579 (725)
                      ..++++++.|++|++|....+.               ........+.+|.+.|.+|+|+|+      +.+||+|+.||+|
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv  237 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI  237 (524)
T ss_dssp             ---------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE
T ss_pred             hhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE
Confidence            3467889999999999543221               111223456778899999999996      5799999999999


Q ss_pred             EEEECCCCeE-----------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEE--
Q 004885          580 VLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--  646 (725)
Q Consensus       580 ~IWdl~~~~~-----------i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl--  646 (725)
                      +|||+..+..           ..++.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.+|  
T Consensus       238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~  316 (524)
T 2j04_B          238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST  316 (524)
T ss_dssp             EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred             EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence            9999976532           3477889999999999986 4899999999999999998764667789999999999  


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .|+|++..+|++|+.|++|+|||+++++++..+..+   ..|.+++|+|++..+++++.|++|++||++++.+++++.+|
T Consensus       317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            567776458899999999999999998877666542   24889999999999999999999999999999999999998


Q ss_pred             CC
Q 004885          724 HS  725 (725)
Q Consensus       724 ~s  725 (725)
                      .+
T Consensus       397 ~~  398 (524)
T 2j04_B          397 ET  398 (524)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=236.41  Aligned_cols=227  Identities=15%  Similarity=0.208  Sum_probs=171.9

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCC------CCccccc--------------ccc
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------RDRVGRS--------------AEV  539 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~------~~~~~~~--------------~~~  539 (725)
                      ..+..+.|++++.             ..++++++.|+.|++|........      ....+..              ...
T Consensus        94 ~~V~~l~~~~~~~-------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (447)
T 3dw8_B           94 EKINKIRWLPQKN-------------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM  160 (447)
T ss_dssp             CCCCEEEECCCCS-------------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEE
T ss_pred             CceEEEEEcCCCC-------------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccch
Confidence            5688889988762             137889999999999965432110      0000000              000


Q ss_pred             CCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEE-------eccCCCCeEEEEEcCCC-
Q 004885          540 GKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKST-------LEEHTQWITDVRFSPSL-  609 (725)
Q Consensus       540 ~~~~~~~~~~~-l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~-------l~~H~~~V~~IafsPd~-  609 (725)
                      ........... ..+|...|++++|+|++++|++| .|++|+|||++. ...+..       +.+|...|++++|+|++ 
T Consensus       161 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence            00001111223 46899999999999999999998 799999999984 444442       56899999999999998 


Q ss_pred             CEEEEEeCCCeEEEEECCCCCee---eEEEecCCC------------CeEEEEEccCCCeEEEEEeCCCcEEEEECCC-C
Q 004885          610 SRLATSSADRTVRVWDTENPDYS---LRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-G  673 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~---l~~~~~h~~------------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~  673 (725)
                      .+|++|+.|++|++||++++..+   +..+.+|..            .|.+++|+|++. +|++++. +.|+|||+++ +
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~  317 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMEN  317 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCS
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCc
Confidence            99999999999999999987721   678888876            899999999988 5667777 9999999997 8


Q ss_pred             eeEEEEecCCC----------------eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          674 SCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       674 ~~v~~~~~~~~----------------V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .++..+..+..                +..++|+|++.+|++++.|+.|+|||+++++++ .+.+|
T Consensus       318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~  382 (447)
T 3dw8_B          318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEAS  382 (447)
T ss_dssp             SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECC
T ss_pred             cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeec
Confidence            88888876443                334999999999999999999999999999876 55555

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.1e-24  Score=226.21  Aligned_cols=207  Identities=15%  Similarity=0.246  Sum_probs=170.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+++.             ...++++|+.|+.|++|....+                 .+..+..+..|...
T Consensus        54 h~~~v~~~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~~  103 (379)
T 3jrp_A           54 HEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEENG-----------------RWSQIAVHAVHSAS  103 (379)
T ss_dssp             CSSCEEEEEECCGG-------------GCSEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSC
T ss_pred             CCCcEEEEEeCCCC-------------CCCEEEEeccCCEEEEEEcCCC-----------------ceeEeeeecCCCcc
Confidence            44556666666541             1348999999999999954222                 23466778889999


Q ss_pred             eEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCe
Q 004885          558 VESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRT  620 (725)
Q Consensus       558 V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-------------d~~~Lasgs~Dgt  620 (725)
                      |.+++|+|+  +++|++++.|+.|++||+...  .....+..|...|++++|+|             ++.+|++++.|+.
T Consensus       104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  183 (379)
T 3jrp_A          104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  183 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred             eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence            999999999  999999999999999999876  34456778999999999999             6999999999999


Q ss_pred             EEEEECCCCC---eeeEEEecCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCCCe---eEEEEe---cCCCeEEEE
Q 004885          621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGS---CAGVFK---CQSGATQMR  689 (725)
Q Consensus       621 IrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g--~~llaSgs~Dg~I~IwDl~t~~---~v~~~~---~~~~V~sv~  689 (725)
                      |++||+++..   .++..+.+|...|.+++|+|++  ..+|++++.||.|+|||++++.   ....+.   +...|++++
T Consensus       184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            9999998765   2456778899999999999994  4588899999999999999864   222222   356799999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCC
Q 004885          690 FQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |+|++.+|++++.|+.|+|||++++
T Consensus       264 ~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          264 WSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9999999999999999999999854

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.4e-24  Score=260.29  Aligned_cols=206  Identities=13%  Similarity=0.114  Sum_probs=176.9

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      +.+...+.+++|+|++.               ++++|+.|+.|++|....                   ..... ...|.
T Consensus        14 ~gh~~~V~~lafspdg~---------------~lAsgs~Dg~I~lw~~~~-------------------~~~~~-~~~~~   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQN---------------LLAIATVTGEVHIYGQQQ-------------------VEVVI-KLEDR   58 (902)
T ss_dssp             EECSSCEEEEEEETTTT---------------EEEEEETTSEEEEECSTT-------------------CEEEE-ECSSC
T ss_pred             cCCCCCcEEEEECCCCC---------------EEEEEeCCCEEEEEeCCC-------------------cEEEE-EcCCC
Confidence            45567889999999887               999999999999994311                   11222 23578


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l--  633 (725)
                      ..|.+++|+| +++|++++.|++|+|||+++++++..+. |...|++++|+|++.+|++|+.||+|++||+++.....  
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            8999999999 8899999999999999999999988886 77899999999999999999999999999999876211  


Q ss_pred             --------EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------------CCeE
Q 004885          634 --------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGAT  686 (725)
Q Consensus       634 --------~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------------------~~V~  686 (725)
                              ..+.+|.+.|++|+|+|++..++++++.|+.| +||+++++++..+..+                   ..|+
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence                    22367889999999999866688899999999 9999999999888754                   5699


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004885          687 QMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~  719 (725)
                      +++|+|+|.+|++++.|++|+|||+++++++..
T Consensus       216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence            999999999999999999999999999988764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=9.7e-24  Score=262.82  Aligned_cols=214  Identities=22%  Similarity=0.360  Sum_probs=190.6

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.               ++++|+.|+.|++|....+                   ..+..+.+|.
T Consensus       612 ~~h~~~v~~~~~s~~~~---------------~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~  657 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQ---------------RIASCGADKTLQVFKAETG-------------------EKLLDIKAHE  657 (1249)
T ss_dssp             CCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEEEECCCS
T ss_pred             ecccccEEEEEECCCCC---------------EEEEEeCCCeEEEEECCCC-------------------CEEEEeccCC
Confidence            34667789999999887               8999999999999954332                   4567788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      +.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|  +..++++|+.|++|++||++++. ++
T Consensus       658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~  736 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CR  736 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EE
T ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hh
Confidence            9999999999999999999999999999999999999999999999999999  56689999999999999999988 78


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---------------------------------
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------------------------  680 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~---------------------------------  680 (725)
                      ..+.+|...|.+++|+|++. ++++++.||.|++||++++.+...+.                                 
T Consensus       737 ~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          737 NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence            89999999999999999988 67799999999999998776544332                                 


Q ss_pred             -----------------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          681 -----------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       681 -----------------------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                                             +...|.+++|+|++.++++++.|+.|++||+.++.++..+.+|.+
T Consensus       816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  883 (1249)
T 3sfz_A          816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS  883 (1249)
T ss_dssp             EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred             EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence                                   245688999999999999999999999999999999999999964

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=2.3e-24  Score=235.46  Aligned_cols=192  Identities=17%  Similarity=0.260  Sum_probs=164.2

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      ++++++.|+.|++|......               .....+..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred             EEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence            55678899999999653321               11123445679999999999999 999999999999999999988


Q ss_pred             C-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEE
Q 004885          587 F-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       587 ~-------~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~ll  656 (725)
                      +       +.+..+.+|...|++++|+|++ .+|++++.|++|++||++++. ++..+  .+|...|.+++|+|++. +|
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l  191 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-LI  191 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-EE
Confidence            7       6678899999999999999997 699999999999999999887 67788  78999999999999987 66


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEE-ecC-C-CeEEEEEecCCCEEEEE---EcCCeEEEEECCCCeE
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVF-KCQ-S-GATQMRFQPRLGRILAA---AIENYISILDVETQVC  716 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~-~~~-~-~V~sv~fspdg~~Lla~---s~Dg~V~IwDl~tg~~  716 (725)
                      ++++.|+.|++||+++++++..+ ..+ . .+.+++|+|++.+|+++   +.|+.|+|||+++++.
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            78889999999999999999888 342 3 38999999998888777   5799999999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=1.1e-23  Score=222.42  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=177.9

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...+.++.|++++.               ++++|+.|+.|++|.....                ........+.+|.
T Consensus         8 ~~h~~~v~~~~~s~~~~---------------~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~   56 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKS---------------LLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYK   56 (342)
T ss_dssp             SCCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECS
T ss_pred             cCCCCcEEEEEEcCCCC---------------EEEEEcCCCeEEEEEeCCC----------------CccccceeeeecC
Confidence            34566789999999876               8999999999999954332                1112334556899


Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---
Q 004885          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---  628 (725)
Q Consensus       556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl-~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~---  628 (725)
                      ..|++++|+|+++ +|++|+.|+.|++||+ .++.. ..+.+  |...|++++|+| +.+|++++.|+.|++||+++   
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            9999999999999 9999999999999999 77655 67788  999999999999 99999999999999998765   


Q ss_pred             ------CCe-----------------------------------------eeEEEecCCCCeEEEEEcc-CCCeEEEEEe
Q 004885          629 ------PDY-----------------------------------------SLRTFTGHSTTVMSLDFHP-SKEDLLCSCD  660 (725)
Q Consensus       629 ------~~~-----------------------------------------~l~~~~~h~~~V~sl~fsP-~g~~llaSgs  660 (725)
                            ...                                         .......|...|.+++|+| ++. ++++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~  213 (342)
T 1yfq_A          135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSS  213 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEE
T ss_pred             ccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEe
Confidence                  220                                         0112234566799999999 887 677888


Q ss_pred             CCCcEEEEECCCC------eeEEEEecC-C---------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          661 NNSEIRYWSINNG------SCAGVFKCQ-S---------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       661 ~Dg~I~IwDl~t~------~~v~~~~~~-~---------~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .||.|++||++..      ..+..+..+ .         .|.+++|+|++.+|++++.|+.|+|||+++++++..+.+|
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            9999999999887      777777753 2         8999999999999999999999999999999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.3e-23  Score=216.60  Aligned_cols=169  Identities=20%  Similarity=0.368  Sum_probs=151.8

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW  624 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvW  624 (725)
                      ..+..+.+|...|.+++|  ++++|++++.|+.|++||  ..+.+..+..|...|.+++|+| ++.+|++++.|+.|++|
T Consensus        95 ~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~  170 (313)
T 3odt_A           95 DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW  170 (313)
T ss_dssp             CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence            445667899999999999  678999999999999999  6788888999999999999998 89999999999999999


Q ss_pred             ECCCCCeeeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          625 DTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       625 Dl~~~~~~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      |..  . .+..+.. |...|.+++|+|++.  +++++.|+.|++||+++++++..+.. ...|++++|+|++ .|++++.
T Consensus       171 d~~--~-~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  244 (313)
T 3odt_A          171 QND--K-VIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE  244 (313)
T ss_dssp             ETT--E-EEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred             ecC--c-eEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence            943  3 5667776 889999999999986  66889999999999999999999885 7789999999998 6899999


Q ss_pred             CCeEEEEECCCCeEEEEEeCCC
Q 004885          703 ENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      |+.|++||+++++++..+.+|.
T Consensus       245 dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          245 DRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             TSEEEEECTTTCCEEEEEECSS
T ss_pred             CCEEEEEECCCCceeEEEeccC
Confidence            9999999999999999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=1.2e-23  Score=224.59  Aligned_cols=201  Identities=11%  Similarity=0.109  Sum_probs=169.1

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+..+.|++++.               ++++|+.|+.|++|.....                 .......+..|...
T Consensus        51 h~~~v~~~~~~~~~~---------------~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~   98 (372)
T 1k8k_C           51 HNGQVTGVDWAPDSN---------------RIVTCGTDRNAYVWTLKGR-----------------TWKPTLVILRINRA   98 (372)
T ss_dssp             CSSCEEEEEEETTTT---------------EEEEEETTSCEEEEEEETT-----------------EEEEEEECCCCSSC
T ss_pred             CCCcccEEEEeCCCC---------------EEEEEcCCCeEEEEECCCC-----------------eeeeeEEeecCCCc
Confidence            445667777777654               8999999999999954221                 22334455789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE------  627 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~------  627 (725)
                      |.+++|+|++++|++++.|+.|++||++...    ......+|...|++++|+|++.+|++++.|+.|++||++      
T Consensus        99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C           99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence            9999999999999999999999999998765    233346789999999999999999999999999999964      


Q ss_pred             ------------CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC
Q 004885          628 ------------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL  694 (725)
Q Consensus       628 ------------~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg  694 (725)
                                  .+. ++..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|+|++
T Consensus       179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  256 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGE-LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES  256 (372)
T ss_dssp             CCCCBTTBSCCCTTC-EEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT
T ss_pred             cccccccccccchhh-heEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC
Confidence                        334 6788889999999999999987 677889999999999999999998886 5689999999997


Q ss_pred             CEEEEEEcCCeEEEEECCC
Q 004885          695 GRILAAAIENYISILDVET  713 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~t  713 (725)
                      .+|+++ .|+.|++||+++
T Consensus       257 ~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          257 SLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEE-TTSSCEEEEEET
T ss_pred             CEEEEE-eCCeEEEEEccC
Confidence            766555 999999999988

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=233.90  Aligned_cols=210  Identities=15%  Similarity=0.129  Sum_probs=177.8

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcE-EEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe--cCCC
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PAST  555 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~-lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~H~  555 (725)
                      ...+.++.|+|++.               + +++|+.|+.|++|.....              .+   ..+..+  ..|.
T Consensus       102 ~~~v~~~~~s~d~~---------------~l~~~~~~dg~v~iwd~~~~--------------~~---~~~~~~~~~~~~  149 (450)
T 2vdu_B          102 YSYIRNLRLTSDES---------------RLIACADSDKSLLVFDVDKT--------------SK---NVLKLRKRFCFS  149 (450)
T ss_dssp             CCCEEEEEECTTSS---------------EEEEEEGGGTEEEEEEECSS--------------SS---SCEEEEEEEECS
T ss_pred             CCceEEEEEcCCCC---------------EEEEEECCCCeEEEEECcCC--------------CC---ceeeeeecccCC
Confidence            44688999999886               5 589999999999965411              01   122233  3677


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----EeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~----~l~~H~~~V~~IafsPd---~~~Lasgs~DgtIrvWDl~~  628 (725)
                      ..|++++|+|++++|++|+.|+.|++|++.++....    .+.+|...|++++|+|+   +.+|++++.|++|++||+.+
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            899999999999999999999999999998766443    77889999999999999   99999999999999999998


Q ss_pred             CCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------------------------
Q 004885          629 PDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------------------------  681 (725)
Q Consensus       629 ~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------------------------  681 (725)
                      +. ++.. +.+|...|.+++|+ ++. +|++++.|+.|+|||+++++++..+..                          
T Consensus       230 ~~-~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          230 CF-IVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             TT-CEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             Cc-eeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            87 4555 66899999999999 877 777999999999999999999888863                          


Q ss_pred             CCCeEEEEEecCCCEEEEEE-cCCeEEEEEC--CCC---eEEEEEeCC
Q 004885          682 QSGATQMRFQPRLGRILAAA-IENYISILDV--ETQ---VCRLKLQVS  723 (725)
Q Consensus       682 ~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl--~tg---~~v~~l~GH  723 (725)
                      ...|.+++|+|++.+|++++ .|+.|+|||+  .++   +++..+.+|
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~  354 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP  354 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC
Confidence            24689999999999999999 7999999999  666   888888877

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-24  Score=246.74  Aligned_cols=215  Identities=10%  Similarity=0.047  Sum_probs=171.1

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...+..+.|+|++.         ..+...+|++|+.|++|++|.............        ........+.+|...|
T Consensus       207 ~~~V~~v~wsp~~~---------~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~--------~~~~p~~~l~~h~~~v  269 (524)
T 2j04_B          207 FGEVWDLKWHEGCH---------APHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--------MCEKPSLTLSLADSLI  269 (524)
T ss_dssp             CCSEEEEEECSSCC---------CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--------CCCSCSEEECCTTTCE
T ss_pred             CCcEEEEEECCCCC---------CCCCCceEEEEecCCeEEEEEcCCCccccccce--------eecCceEEEEcCCCCE
Confidence            34678888998642         112245899999999999997654421100000        0012334678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDV--RFSPSL-SRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~I--afsPd~-~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      +|++|+++ ..|++|+.||+|++||++++ .+...+.+|...|++|  +|+|++ .+|+||+.|++|+|||++++. ++.
T Consensus       270 ~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~  347 (524)
T 2j04_B          270 TTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTK  347 (524)
T ss_dssp             EEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHC
T ss_pred             EEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-ccc
Confidence            99999986 48999999999999999875 4456788999999999  567787 899999999999999999876 566


Q ss_pred             EEecCCC--CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       635 ~~~~h~~--~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      .+.+|..  .|.+|+|+|++. .+++++.|++|++||++++.++..+.. ...|++|+|+|++.+|++|+.|++|+|||+
T Consensus       348 ~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          348 TTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            6667653  588999999988 567888899999999999988776654 678999999999999999999999999997


Q ss_pred             CC
Q 004885          712 ET  713 (725)
Q Consensus       712 ~t  713 (725)
                      ..
T Consensus       427 ~~  428 (524)
T 2j04_B          427 AR  428 (524)
T ss_dssp             CS
T ss_pred             hH
Confidence            64

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=1.4e-23  Score=226.26  Aligned_cols=218  Identities=14%  Similarity=0.258  Sum_probs=180.5

Q ss_pred             cCCCCCeeEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE-----
Q 004885          476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----  549 (725)
Q Consensus       476 ~s~s~~~s~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----  549 (725)
                      ..+...+.++.|+| ++.               ++++|+.|+.|++|...........           ......     
T Consensus        40 ~~h~~~v~~~~~s~~~~~---------------~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~   93 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGR---------------YMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRD   93 (408)
T ss_dssp             CCCSSCEEEEEECTTTCC---------------EEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTT
T ss_pred             eccCCcEEEEEEecCCCC---------------EEEEEcCCCeEEEEECCCCcccceE-----------ecccccccccc
Confidence            34667889999999 776               8999999999999976554321111           111111     


Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 004885          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWD  625 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd---~~~Lasgs~DgtIrvWD  625 (725)
                      ...+|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+. +...+.++.|+|.   +.+|++++.|+.|++||
T Consensus        94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            1246999999999999 77899999999999999999999888776 7888999999994   45999999999999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe-eEEEE----------------ecCCCeEEE
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQM  688 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-~v~~~----------------~~~~~V~sv  688 (725)
                      ++++. .+..+.+|...|.+++|+|++.+++++++.||.|++||++++. ++..+                .+...|.++
T Consensus       173 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          173 LKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSSSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CCCcc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            99887 7888999999999999999999888899999999999998765 44443                235679999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       689 ~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY  284 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceecc
Confidence            999999999999999999999999987655443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.4e-23  Score=239.43  Aligned_cols=212  Identities=15%  Similarity=0.176  Sum_probs=184.7

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-  557 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-  557 (725)
                      ...+.++.|+|++.               ++++++ |+.|++|......               ........+.+|.+. 
T Consensus        18 ~~~v~~~~~spdg~---------------~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~   66 (615)
T 1pgu_A           18 RNFTTHLSYDPTTN---------------AIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSV   66 (615)
T ss_dssp             TTCCCCCEEETTTT---------------EEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSC
T ss_pred             cCceeEEEECCCCC---------------EEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCce
Confidence            44677889999887               788887 8899999543221               011456778899999 


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 004885          558 VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV  623 (725)
Q Consensus       558 V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~--------~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrv  623 (725)
                      |++++|+|  ++++|++|+.|++|+|||+.++        ..+..+..|...|.+++|+|++++|++++.|    +.|++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence            99999999  9999999999999999999744        6777888999999999999999999999988    68888


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC---CeEEEEEecC-CCEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRIL  698 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~---~V~sv~fspd-g~~Ll  698 (725)
                      ||  .+. .+..+.+|...|.+++|+|++..++++++.|+.|++||+++++++..+.. ..   .|++++|+|+ +.+|+
T Consensus       147 ~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (615)
T 1pgu_A          147 WD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  223 (615)
T ss_dssp             TT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence            88  344 68889999999999999999987888999999999999999999999885 45   7999999999 99999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEE-e---CCC
Q 004885          699 AAAIENYISILDVETQVCRLKL-Q---VSH  724 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~~l-~---GH~  724 (725)
                      +++.|+.|++||+++++++..+ .   +|.
T Consensus       224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQ  253 (615)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred             EEeCCCeEEEEECCCCCEeEEecccccccC
Confidence            9999999999999999999999 5   775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.92  E-value=2.7e-23  Score=227.43  Aligned_cols=194  Identities=18%  Similarity=0.226  Sum_probs=168.3

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .+++++.|+.|++|....+                   .....+. .|...|++++|+|++++|++|+.||.|+|||+.+
T Consensus       105 ~l~~~~~d~~v~lw~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSG-------------------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             SEEEEEETTEEEEEETTTC-------------------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CEEEEECCCeEEEeeCCCC-------------------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            3567889999999955333                   1222233 3889999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      ++.+..+.+|...|.+++|+  +.+|++++.|+.|++||++.....+..+.+|...|.+++|+|++. +|++++.|+.|+
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~  242 (401)
T 4aez_A          166 QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQ  242 (401)
T ss_dssp             CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEE
Confidence            99999999999999999994  579999999999999999966657889999999999999999987 777999999999


Q ss_pred             EEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEeCC
Q 004885          667 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       667 IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s---~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +||++++.++..+.. ...|.+++|+|++..+++++   .|+.|++||+++++++..+..+
T Consensus       243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS
T ss_pred             EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            999999999888864 67899999999877666654   4999999999999999988754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=2.9e-23  Score=229.95  Aligned_cols=212  Identities=18%  Similarity=0.309  Sum_probs=176.9

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+..+.|++++.              .++++|+.|+.|++|.......            ....+.....+.+|..
T Consensus       179 ~h~~~v~~l~~~~~~~--------------~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~h~~  232 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLN--------------GYLLSASDDHTICLWDINATPK------------EHRVIDAKNIFTGHTA  232 (430)
T ss_dssp             CCSSCCCCEEECTTST--------------TEEEEECTTSCEEEEETTSCCB------------GGGEEECSEEECCCSS
T ss_pred             CCCCCeEEEEeCCCCC--------------CeEEEEeCCCeEEEEeCCCCCC------------CCceeccceeecCCCC
Confidence            3444667788887654              3889999999999996654311            1122334566779999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe
Q 004885          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      .|.+++|+| ++.+|++++.|+.|+|||+++.   +.+..+..|...|++|+|+|++. +|++|+.|++|++||+++...
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~  312 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL  312 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence            999999999 6789999999999999999876   57778889999999999999876 688999999999999998665


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--------------CeeEEEEec-CCCeEEEEEecCCC-
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------------GSCAGVFKC-QSGATQMRFQPRLG-  695 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--------------~~~v~~~~~-~~~V~sv~fspdg~-  695 (725)
                      ++..+.+|...|.+|+|+|++..+|++++.|+.|+|||+..              ..++..+.. ...|++++|+|++. 
T Consensus       313 ~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  392 (430)
T 2xyi_A          313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  392 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred             CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence            78999999999999999999988899999999999999986              245555544 56799999999998 


Q ss_pred             EEEEEEcCCeEEEEECCCC
Q 004885          696 RILAAAIENYISILDVETQ  714 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg  714 (725)
                      .|++++.|+.|+||++...
T Consensus       393 ~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          393 IICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEEETTSEEEEEEECHH
T ss_pred             EEEEEECCCCEEEeEcccc
Confidence            8888999999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-24  Score=237.03  Aligned_cols=208  Identities=9%  Similarity=0.148  Sum_probs=168.1

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe--cC--CCCCeEEEE--EcCCCCEEEEEeCCCcEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PA--STSKVESCH--FSPDGKLLATGGHDKKAV  580 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~--H~~~V~~i~--fSpdg~~LaSgs~Dg~V~  580 (725)
                      .++++|+.|+.|++|+......+.     ..   .......+..+  ..  +...+.++.  +++++++|++|+.|+.|+
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~-----~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  195 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQES-----EV---KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI  195 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETT-----EE---EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             CEEEEEeCCCEEEEEEeccccCCc-----ee---eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE
Confidence            489999999999999653110000     00   00011122222  22  677899988  668999999999999999


Q ss_pred             EEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-cCCCCeEEEEEccC---CCe
Q 004885          581 LWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS---KED  654 (725)
Q Consensus       581 IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-~h~~~V~sl~fsP~---g~~  654 (725)
                      +||+++++.+..+.+  |...|++++|+|++.+|++|+.|++|++||++++. ++..+. .|...|.+++|+|.   ...
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred             EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCcc
Confidence            999999999999988  89999999999999999999999999999999876 677775 78889999977764   233


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEec---------------------------CCCeEEEEEecCCCEEEEEEcCCeEE
Q 004885          655 LLCSCDNNSEIRYWSINNGSCAGVFKC---------------------------QSGATQMRFQPRLGRILAAAIENYIS  707 (725)
Q Consensus       655 llaSgs~Dg~I~IwDl~t~~~v~~~~~---------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~  707 (725)
                      +|++++.|+.|+|||+++++++..+..                           ...|++++|+ ++.+|++++.|+.|+
T Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~  353 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV  353 (437)
T ss_dssp             EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence            788999999999999999999988872                           2348899999 668899999999999


Q ss_pred             EEECCCCeEEEEEeCCC
Q 004885          708 ILDVETQVCRLKLQVSH  724 (725)
Q Consensus       708 IwDl~tg~~v~~l~GH~  724 (725)
                      +||+++++++..+.+|.
T Consensus       354 ~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          354 MFSLNELSSSKAVISPS  370 (437)
T ss_dssp             EEETTCGGGCEEEECC-
T ss_pred             EEECCCcccceEEeccc
Confidence            99999999999998873

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7e-24  Score=230.30  Aligned_cols=214  Identities=19%  Similarity=0.312  Sum_probs=177.1

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++              ..++++|+.|+.|++|+.........          .........+..|...
T Consensus       112 h~~~v~~~~~~~~~--------------~~~l~s~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A          112 HSSSVKTVKFNAKQ--------------DNVLASGGNNGEIFIWDMNKCTESPS----------NYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSSCCCEEEECSSS--------------TTBEEEECSSSCEEBCBTTTTSSCTT----------TCCCBCCCCSCCSSCC
T ss_pred             CccceEEEEEcCCC--------------CCEEEEEcCCCeEEEEECCCCccccc----------cccccccccccCCCCC
Confidence            44566777777762              24899999999999997654421100          0011112234678999


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCC-CEEEEEeCCC---eEEEEEC
Q 004885          558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSL-SRLATSSADR---TVRVWDT  626 (725)
Q Consensus       558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~-~~Lasgs~Dg---tIrvWDl  626 (725)
                      |.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|      ...|++++|+|++ .+|++++.|+   .|++||+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            999999998 789999999999999999999999888876      7899999999986 6899999998   9999999


Q ss_pred             CCCCeeeEEEe-cCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC-CEEEEEEc
Q 004885          627 ENPDYSLRTFT-GHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL-GRILAAAI  702 (725)
Q Consensus       627 ~~~~~~l~~~~-~h~~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg-~~Lla~s~  702 (725)
                      ++...++..+. +|...|.+++|+| ++. +|++++.|+.|++||+++++++..+.. ...|++++|+|++ .+|++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            98755777888 8999999999999 655 777999999999999999999998876 6779999999998 78999999


Q ss_pred             CCeEEEEECCCCeE
Q 004885          703 ENYISILDVETQVC  716 (725)
Q Consensus       703 Dg~V~IwDl~tg~~  716 (725)
                      |+.|+|||+.++..
T Consensus       327 d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          327 DNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSEEEEEESCCCCC
T ss_pred             CCcEEEEEccCCCC
Confidence            99999999988753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=3e-23  Score=246.07  Aligned_cols=212  Identities=22%  Similarity=0.324  Sum_probs=186.7

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               ++++|+.|+.|++|....+                   +.+..+.+|.+
T Consensus        53 ~~~~~v~~~~~s~~~~---------------~l~~~~~dg~i~vw~~~~~-------------------~~~~~~~~~~~   98 (814)
T 3mkq_A           53 VTETPVRAGKFIARKN---------------WIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPD   98 (814)
T ss_dssp             CCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEETTTC-------------------CEEEEEECCSS
T ss_pred             cCCCcEEEEEEeCCCC---------------EEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCC
Confidence            3455678888888776               8999999999999954332                   45667789999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      .|++++|+|++++|++++.|++|++||+.++ .....+.+|...|++++|+| ++.+|++++.|++|++||+.++. ...
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-~~~  177 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNF  177 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-CSE
T ss_pred             CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cee
Confidence            9999999999999999999999999999886 77788899999999999999 78899999999999999998877 444


Q ss_pred             EEec-CCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          635 TFTG-HSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       635 ~~~~-h~~~V~sl~fsP--~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      .+.. +...|.+++|+|  ++. ++++++.||.|++||++++.++..+.. ...|++++|+|++.+|++++.||.|++||
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd  256 (814)
T 3mkq_A          178 TLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (814)
T ss_dssp             EEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            5544 448899999999  776 777899999999999999999998885 67899999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCC
Q 004885          711 VETQVCRLKLQVSH  724 (725)
Q Consensus       711 l~tg~~v~~l~GH~  724 (725)
                      +.+++++..+..|.
T Consensus       257 ~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          257 SSTYKVEKTLNVGL  270 (814)
T ss_dssp             TTTCSEEEEECCSS
T ss_pred             CCCCcEEEEeecCC
Confidence            99999999998874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.8e-23  Score=213.52  Aligned_cols=167  Identities=20%  Similarity=0.318  Sum_probs=148.8

Q ss_pred             eeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 004885          546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRV  623 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrv  623 (725)
                      ..+..+..|...|.+++|+| ++++|++++.|+.|++||  ..+.+..+.. |...|.+++|+|++. |++++.|+.|++
T Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  209 (313)
T 3odt_A          133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL  209 (313)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred             cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence            45567788999999999998 899999999999999999  4566777777 899999999999987 999999999999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~  702 (725)
                      ||++++. ++..+.+|...|.+++|+|++.  +++++.|+.|++||+++++++..+.. ...|.+++|+|++. +++++.
T Consensus       210 ~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  285 (313)
T 3odt_A          210 VDMHTGD-VLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS  285 (313)
T ss_dssp             EETTTCC-EEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET
T ss_pred             EECCchh-hhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC
Confidence            9999987 7889999999999999999984  66888999999999999999998886 55899999999987 778999


Q ss_pred             CCeEEEEECCCCeEEEE
Q 004885          703 ENYISILDVETQVCRLK  719 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v~~  719 (725)
                      |+.|+|||+++++.+..
T Consensus       286 dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          286 DNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             TSCEEEEESCGGGCCC-
T ss_pred             CCcEEEEeCCCCceeeh
Confidence            99999999998865443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=8.9e-24  Score=223.89  Aligned_cols=199  Identities=15%  Similarity=0.166  Sum_probs=164.7

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE------cCCCCEEEEEeCCCcE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SPDGKLLATGGHDKKA  579 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f------Spdg~~LaSgs~Dg~V  579 (725)
                      ..++++|+.|+.|++|......                  ..+..+.+|...|.+++|      +|++++|++++.|+.|
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPE------------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCS------------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             CceEEEecCCCeEEEEeCCCCC------------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            3589999999999999554331                  134567799999999955      6799999999999999


Q ss_pred             EEEECCCCe-EEEEeccCCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc
Q 004885          580 VLWCTESFT-VKSTLEEHTQ----WITDVR----FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (725)
Q Consensus       580 ~IWdl~~~~-~i~~l~~H~~----~V~~Ia----fsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP  650 (725)
                      ++||++++. .+..+..|..    .|.+++    |+|++.+|++++.|+.|++||++++.  ......|...|.+++|+|
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCC
Confidence            999999876 6777766654    899998    67899999999999999999999876  345567889999999999


Q ss_pred             ---CCCeEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCC------
Q 004885          651 ---SKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG-RILAAAIENYISILDVETQ------  714 (725)
Q Consensus       651 ---~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~------~~~~V~sv~fspdg~-~Lla~s~Dg~V~IwDl~tg------  714 (725)
                         ++. ++++++.||.|++||++++.++..+.      +...|++++|+|++. +|++++.|+.|+|||++++      
T Consensus       220 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  298 (357)
T 3i2n_A          220 KDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK  298 (357)
T ss_dssp             SSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred             CCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence               776 66788999999999999877655443      467899999999988 7888999999999999864      


Q ss_pred             -------------eEEEEEeCCCC
Q 004885          715 -------------VCRLKLQVSHS  725 (725)
Q Consensus       715 -------------~~v~~l~GH~s  725 (725)
                                   +++..+.+|.+
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~  322 (357)
T 3i2n_A          299 DSEGIEMGVAGSVSLLQNVTLSTQ  322 (357)
T ss_dssp             CTTSCCCCCCCEEEEEEEEECCSS
T ss_pred             cCCCCccccccccceeeccccCCC
Confidence                         57888888863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=4.8e-23  Score=223.94  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=137.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSg--s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      +...|.+++|||||++|+++  +.|++|+|||+.+++++..+. |...|++|+|+|++++|++++.|+ +++|+..++..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~  209 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC  209 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcc
Confidence            44568999999999987655  478999999999999998886 778899999999999999998554 66666666653


Q ss_pred             ee-EEEecCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCCCeeE----EEEec-CCCeEEEEEecCCCEEEEEE
Q 004885          632 SL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA----GVFKC-QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       632 ~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v----~~~~~-~~~V~sv~fspdg~~Lla~s  701 (725)
                      .. ....+|...|.+++|+|++. ++++++.|+    .|++||+......    ..+.. ...|++++|+|+|.+|++|+
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             eeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            32 34457888999999999988 555666665    6888998876543    23333 56799999999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEE-eCCCC
Q 004885          702 IENYISILDVETQVCRLKL-QVSHS  725 (725)
Q Consensus       702 ~Dg~V~IwDl~tg~~v~~l-~GH~s  725 (725)
                      .|++|+|||+++++++.++ .||.+
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~  313 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSF  313 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSS
T ss_pred             CCCEEEEEECCCCcEEEEecCcccC
Confidence            9999999999999999986 78964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=1.1e-22  Score=214.24  Aligned_cols=207  Identities=25%  Similarity=0.372  Sum_probs=176.6

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...+.++.|++++.               ++++|+.|+.|++|.....                   ........+...+
T Consensus        86 ~~~V~~~~~s~dg~---------------~l~s~~~d~~i~~~~~~~~-------------------~~~~~~~~~~~~~  131 (340)
T 4aow_A           86 SHFVSDVVISSDGQ---------------FALSGSWDGTLRLWDLTTG-------------------TTTRRFVGHTKDV  131 (340)
T ss_dssp             SSCEEEEEECTTSS---------------EEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCE
T ss_pred             CCCEEEEEECCCCC---------------EEEEEcccccceEEeeccc-------------------ceeeeecCCCCce
Confidence            44555666666554               9999999999999943222                   3445566788889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      .++.+++++++|++|+.|+.+++||+..... ...+.+|...|.+++|+++  ..++++++.|++|++||+++.. ++..
T Consensus       132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~  210 (340)
T 4aow_A          132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTN  210 (340)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred             eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeE
Confidence            9999999999999999999999999977544 3445789999999999986  4578999999999999999887 7888


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      +.+|...|++|+|+|++. +|++|+.|+.|++||+++.+++..+.+...|.+++|+|++ ++++++.|+.|+|||++++.
T Consensus       211 ~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEETTTTE
T ss_pred             ecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEECCCCe
Confidence            999999999999999988 7779999999999999999999999998899999999984 56778889999999999998


Q ss_pred             EEEEEeC
Q 004885          716 CRLKLQV  722 (725)
Q Consensus       716 ~v~~l~G  722 (725)
                      ++..+..
T Consensus       289 ~~~~~~~  295 (340)
T 4aow_A          289 IVDELKQ  295 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEeccc
Confidence            8887764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=3.4e-24  Score=230.60  Aligned_cols=202  Identities=15%  Similarity=0.110  Sum_probs=160.4

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|++++.               ++++|+.|+.|++|+.....                .+.....+.+|..
T Consensus        53 ~h~~~v~~~~~s~~~~---------------~l~s~s~d~~v~vwd~~~~~----------------~~~~~~~~~~~~~  101 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSN---------------RIVTCSQDRNAYVYEKRPDG----------------TWKQTLVLLRLNR  101 (377)
T ss_dssp             CCSSCEEEEEECTTTC---------------CEEEEETTSSEEEC----------------------CCCCEEECCCCSS
T ss_pred             cCCceEEEEEEeCCCC---------------EEEEEeCCCeEEEEEcCCCC----------------ceeeeeEecccCC
Confidence            3556778888888765               89999999999999553331                2334566788999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---  629 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~---~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~---  629 (725)
                      .|++++|+|++++|++|+.|+.|++||+++++   ....+.. |...|++++|+|++.+|++++.|++|++||++..   
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD  181 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence            99999999999999999999999999998876   4677777 9999999999999999999999999999998632   


Q ss_pred             --------------CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee----EEEEec-CCCeEEEEE
Q 004885          630 --------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC-QSGATQMRF  690 (725)
Q Consensus       630 --------------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~----v~~~~~-~~~V~sv~f  690 (725)
                                    ..++..+ +|...|.+++|+|++. +|++++.|+.|++||++++.+    +..+.. ...|.+++|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW  259 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE
T ss_pred             CCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE
Confidence                          1244555 8999999999999988 667899999999999999887    666665 567999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECC
Q 004885          691 QPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       691 spdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      +|++.+|++++.|+ +.+|+..
T Consensus       260 s~~~~~l~~~~~~~-~~~~~~~  280 (377)
T 3dwl_C          260 ANESAIVAAGYNYS-PILLQGN  280 (377)
T ss_dssp             EETTEEEEEESSSS-EEEECCC
T ss_pred             cCCCCEEEEEcCCc-EEEEEeC
Confidence            99987776665455 5577765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.6e-23  Score=216.97  Aligned_cols=166  Identities=17%  Similarity=0.250  Sum_probs=147.5

Q ss_pred             EEEecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          548 FQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       548 ~~~l~~H~~--~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      +..+..|.+  .|.+++|+|++++|++++.|+.|++||+.+ ...+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            344556666  899999999999999999999999999998 78899999999999999999999999999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--------------cEEEEECCCCeeEEEEec-CCCeEEEE
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------------EIRYWSINNGSCAGVFKC-QSGATQMR  689 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--------------~I~IwDl~t~~~v~~~~~-~~~V~sv~  689 (725)
                      |+++.. .+..+. +...+.+++|+|++.. +++++.++              .|++||+.+++++..+.. ...|++++
T Consensus       246 d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~  322 (369)
T 3zwl_B          246 DVSTLQ-VLKKYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA  322 (369)
T ss_dssp             ETTTCC-EEEEEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ECCCCc-eeeeec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEE
Confidence            999887 566665 7788999999999985 45666566              899999999999998885 67899999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          690 FQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      |+|++.+|++++.|+.|+|||++++..
T Consensus       323 ~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          323 ISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             ECCCCCEEEEEcCCCeEEEEECccccc
Confidence            999999999999999999999987543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=7.7e-23  Score=233.36  Aligned_cols=215  Identities=16%  Similarity=0.201  Sum_probs=185.5

Q ss_pred             CCCC-eeEEEEec--CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          478 GASS-KSLLMFGS--DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       478 ~s~~-~s~l~fs~--dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      +... +.++.|+|  ++.               ++++|+.|+.|++|....+.           .........+..+..|
T Consensus        62 h~~~~v~~~~~sp~~~~~---------------~l~s~~~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~  115 (615)
T 1pgu_A           62 HGSSVVTTVKFSPIKGSQ---------------YLCSGDESGKVIVWGWTFDK-----------ESNSVEVNVKSEFQVL  115 (615)
T ss_dssp             TTTSCEEEEEECSSTTCC---------------EEEEEETTSEEEEEEEEEEG-----------GGTEEEEEEEEEEECC
T ss_pred             CCCceEEEEEECcCCCCC---------------EEEEecCCCEEEEEeCCCCc-----------ccccccccccchhhcc
Confidence            4455 77778877  665               99999999999999542210           0001133566778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENP  629 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~  629 (725)
                      ...|.+++|+|++++|++++.|    +.|++||  .++.+..+.+|...|++++|+|++. +|++++.|+.|++||+.+.
T Consensus       116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~  193 (615)
T 1pgu_A          116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  193 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence            9999999999999999999988    6888887  5678889999999999999999987 8999999999999999987


Q ss_pred             CeeeEEEecCCC---CeEEEEEccC-CCeEEEEEeCCCcEEEEECCCCeeEEEE-----ecCCCeEEEEEecCCCEEEEE
Q 004885          630 DYSLRTFTGHST---TVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       630 ~~~l~~~~~h~~---~V~sl~fsP~-g~~llaSgs~Dg~I~IwDl~t~~~v~~~-----~~~~~V~sv~fspdg~~Lla~  700 (725)
                      . ++..+.+|..   .|.+++|+|+ +. ++++++.|+.|++||+++++++..+     .+...|.+++|+ ++.+|+++
T Consensus       194 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          194 K-FSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV  270 (615)
T ss_dssp             E-EEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred             c-eeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence            7 7888999999   9999999999 77 6778999999999999999999998     557889999999 99999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEeCC
Q 004885          701 AIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +.|+.|++||+++++++..+..|
T Consensus       271 ~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          271 GADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCC
Confidence            99999999999999999999877

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=1.4e-22  Score=224.11  Aligned_cols=191  Identities=20%  Similarity=0.403  Sum_probs=169.1

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++++|+.|+.|++|+..                   +.+.+..+.+|.+.|.+++|  ++++|++|+.||+|+|||+.+
T Consensus       144 ~~l~~g~~dg~i~iwd~~-------------------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          144 QKIVSGLRDNTIKIWDKN-------------------TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SEEEEEESSSCEEEEESS-------------------SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEeCC-------------------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            389999999999999432                   22456778899999999999  789999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--eEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~--l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      ++.+..+.+|...|.+++|++  .+|++|+.|++|++||+.++...  ...+.+|...|.+++|  ++. ++++++.||.
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~  277 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRT  277 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCe
Confidence            999999999999999999974  59999999999999999987622  2677899999999999  444 7789999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |++||+++++++..+.. ...|.++.|+  +.++++++.|+.|++||+++++++..+.+|.+
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            99999999999999885 6779999995  57999999999999999999999999999963

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=3.6e-23  Score=216.35  Aligned_cols=165  Identities=17%  Similarity=0.271  Sum_probs=143.4

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsP--d~~~Lasgs~DgtIr  622 (725)
                      ..+.+|.+.|++++|+|++++|++|+.|+.|+|||+.++    +.+..+.+|...|++++|+|  ++.+|++++.|++|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346799999999999999999999999999999999875    56778889999999999999  699999999999999


Q ss_pred             EEECCCCC--------eeeEEEecCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCCCee-----------------
Q 004885          623 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC-----------------  675 (725)
Q Consensus       623 vWDl~~~~--------~~l~~~~~h~~~V~sl~fsP~--g~~llaSgs~Dg~I~IwDl~t~~~-----------------  675 (725)
                      +||++++.        .++..+.+|...|.+++|+|+  +. ++++++.|+.|++||++++++                 
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99998763        357788899999999999999  76 677899999999999875432                 


Q ss_pred             -------------------------------------------EEEEe-cCCCeEEEEEecCC----CEEEEEEcCCeEE
Q 004885          676 -------------------------------------------AGVFK-CQSGATQMRFQPRL----GRILAAAIENYIS  707 (725)
Q Consensus       676 -------------------------------------------v~~~~-~~~~V~sv~fspdg----~~Lla~s~Dg~V~  707 (725)
                                                                 +..+. +...|++++|+|++    .+|++++.|+.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence                                                       22222 25679999999998    7899999999999


Q ss_pred             EEECCCC
Q 004885          708 ILDVETQ  714 (725)
Q Consensus       708 IwDl~tg  714 (725)
                      |||++++
T Consensus       244 iwd~~~~  250 (351)
T 3f3f_A          244 IFKITEK  250 (351)
T ss_dssp             EEEEEEC
T ss_pred             EEeCCCC
Confidence            9999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.3e-23  Score=228.79  Aligned_cols=171  Identities=12%  Similarity=0.095  Sum_probs=151.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       551 l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~--~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      ..+|.+.|++++|+|++++| ++|+.|++|+|||+.  +++.+..+.  .|...|++++|+|++.+|++++.|+.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            45788899999999999986 899999999999999  888888776  5678999999999999999999999999999


Q ss_pred             CCCCCe---eeEEEecCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeEEEEEecCCCEE
Q 004885          626 TENPDY---SLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRI  697 (725)
Q Consensus       626 l~~~~~---~l~~~~~h~~~V~sl~fsP~---g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--~~~~V~sv~fspdg~~L  697 (725)
                      +.+...   ++..+.+|...|++|+|+|+   +. +|++++.|+.|+|||++++.++..+.  +...|++++|+ ++.+|
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            987662   22377889999999999999   65 77899999999999999999887754  46789999999 99999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          698 LAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ++++.|+.|+|||+++++++..+..|
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECH
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecch
Confidence            99999999999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=218.61  Aligned_cols=210  Identities=22%  Similarity=0.231  Sum_probs=167.4

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+..+.|++++.              .++++++.|+.|++|.....                   ..+..+ .+...
T Consensus        98 ~~~~v~~~~~~~~~~--------------~~l~s~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~  143 (408)
T 4a11_B           98 HRYSVETVQWYPHDT--------------GMFTSSSFDKTLKVWDTNTL-------------------QTADVF-NFEET  143 (408)
T ss_dssp             CSSCEEEEEECTTCT--------------TCEEEEETTSEEEEEETTTT-------------------EEEEEE-ECSSC
T ss_pred             CCCcEEEEEEccCCC--------------cEEEEEeCCCeEEEeeCCCC-------------------ccceec-cCCCc
Confidence            556778888888332              37899999999999954322                   223333 36778


Q ss_pred             eEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee
Q 004885          558 VESCHFSPD---GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       558 V~~i~fSpd---g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      +.++.|++.   +.+|++++.|+.|++||+++++.+..+.+|...|++++|+|++. +|++++.|+.|++||+++...++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            999999984   45999999999999999999999999999999999999999988 58999999999999998876555


Q ss_pred             EEE---------------ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe------------------------
Q 004885          634 RTF---------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------------  674 (725)
Q Consensus       634 ~~~---------------~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~------------------------  674 (725)
                      ..+               .+|...|.+++|+|++. +|++++.|+.|++||+++++                        
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG  302 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence            555               57889999999999987 66788889999999987643                        


Q ss_pred             -----------------------eEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          675 -----------------------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       675 -----------------------~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                                             ++..+. +...|++++|+|++.+|++++.||.|+|||+++++.+.....
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence                                   344444 356799999999999999999999999999999987765543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-23  Score=248.37  Aligned_cols=208  Identities=15%  Similarity=0.201  Sum_probs=177.9

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+...+.++.|++++.               ++++|+.|+.|++|...                 ..+...+..+.+|
T Consensus         5 l~gH~~~V~~l~~s~dg~---------------~latg~~dg~I~vwd~~-----------------~~~~~~~~~l~~h   52 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGK---------------RLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGH   52 (753)
T ss_dssp             ---CCCCEEEECCCSSSC---------------CEEEEETTTEEEEEEEE-----------------TTEEEEEEEECCC
T ss_pred             cccCcceeEEEEECCCCC---------------eEEEEECCCcEEEEecC-----------------CCCCccceeccCC
Confidence            345667889999999876               88999999999999432                 1244667788999


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004885          555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       555 ~~~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd--~~~Lasgs~DgtIrvWDl~~  628 (725)
                      .+.|++++|+++  +++|++|+.||+|++||+.+++  .+..+.+|...|++++|+|+  +.+|++|+.|++|++||+++
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            999999999987  9999999999999999999886  77788899999999999998  99999999999999999988


Q ss_pred             CC-eeeEEEecCCCCeEEEEEccC-------------CCeEEEEEeCCCcEEEEECCCC----eeEEEEec-CCCeEEEE
Q 004885          629 PD-YSLRTFTGHSTTVMSLDFHPS-------------KEDLLCSCDNNSEIRYWSINNG----SCAGVFKC-QSGATQMR  689 (725)
Q Consensus       629 ~~-~~l~~~~~h~~~V~sl~fsP~-------------g~~llaSgs~Dg~I~IwDl~t~----~~v~~~~~-~~~V~sv~  689 (725)
                      .. .....+.+|...|.+++|+|.             +. ++++|+.||.|++||++++    .++..+.. ...|++++
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence            73 245667889999999999994             55 6779999999999999877    44555554 67899999


Q ss_pred             EecC---CCEEEEEEcCCeEEEEECCCCe
Q 004885          690 FQPR---LGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       690 fspd---g~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      |+|+   +.+|++++.||.|+|||+++++
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            9999   8899999999999999998863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=2.5e-22  Score=222.78  Aligned_cols=212  Identities=18%  Similarity=0.271  Sum_probs=174.7

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCcccc----ccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGR----SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~  580 (725)
                      ...++++|+.|+.|++|..............    ............+..+.+|...|.++.  +++++|++|+.|+.|+
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~  293 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLI  293 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEE
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEE
Confidence            3468999999999999977655322111000    000000111123567889999999884  5789999999999999


Q ss_pred             EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       581 IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      +||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++||++++. ++..+.+|...|.+++|++  . ++++++
T Consensus       294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~--~-~l~s~s  369 (464)
T 3v7d_B          294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD--K-FLVSAA  369 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECS--S-EEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCCcEEEEEEcC--C-EEEEEe
Confidence            99999999999999999999999999999999999999999999999987 7899999999999999984  3 788999


Q ss_pred             CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-EeCC
Q 004885          661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-LQVS  723 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~-l~GH  723 (725)
                      .||.|++||++++.....+.+...+..++|++++.++++++ |+.|+|||++++++++. +.+|
T Consensus       370 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~  432 (464)
T 3v7d_B          370 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD  432 (464)
T ss_dssp             TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT
T ss_pred             CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC
Confidence            99999999999998888887778889999999998888877 99999999999999986 4444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.3e-23  Score=218.38  Aligned_cols=227  Identities=7%  Similarity=0.011  Sum_probs=167.7

Q ss_pred             ccccCCCCCeeEEEEecCCCccc------cccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceee
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~l------a~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~  546 (725)
                      .+...++.+..+..|+......+      .+....+.+.   +++|+.|+.|++|.....       ...++....   .
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~-------~~~~~~~~~---~  115 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ-------ITILDSKTN---K  115 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTE-------EEEEETTTC---C
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCc-------eEEeecCCc---c
Confidence            44556667777777876543211      1111112222   788899999999954321       111222122   2


Q ss_pred             eEEEe-cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885          547 EFQLI-PASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVR  622 (725)
Q Consensus       547 ~~~~l-~~H~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIr  622 (725)
                      .+..+ .+|.+.|.+++|+|  ++++|++|+.|++|++||+++++.+..+. .|...|++++|+|++.+|++|+.|+.|+
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            22222 37888999999999  99999999999999999999998877664 4556899999999999999999999999


Q ss_pred             EEECCCCCeeeEEEec-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCe--EEEEEecCCC
Q 004885          623 VWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGA--TQMRFQPRLG  695 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V--~sv~fspdg~  695 (725)
                      +||++++......+.. |...|++|+|+|++. +|++++ |+.|++||+++++++..+..    ...+  .+++|+|++.
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK  273 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence            9999998843377887 999999999999988 566777 55999999999877654432    1223  4699999999


Q ss_pred             EEEEEEc-CCeEEEEECCCC
Q 004885          696 RILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       696 ~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      +|++++. |+.|+||++++.
T Consensus       274 ~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          274 NMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTT
T ss_pred             EEEEecCCCCcEEEEEEccc
Confidence            9999998 999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.1e-22  Score=231.28  Aligned_cols=216  Identities=11%  Similarity=0.109  Sum_probs=163.5

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCC--------------CCCCCccccccccCCCcee
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD--------------ADPRDRVGRSAEVGKGFTF  545 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~--------------~~~~~~~~~~~~~~~~~~~  545 (725)
                      .-+..+.|+|||.               ++++++.|++|+--.....              .++.+.....|.....   
T Consensus        16 ~~v~sv~~SpDG~---------------~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~---   77 (588)
T 2j04_A           16 DWKNNLTWARDGT---------------LYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQN---   77 (588)
T ss_dssp             SSSCCEEECTTSC---------------EEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSS---
T ss_pred             ccEEEEEECCCCC---------------EEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCc---
Confidence            4567889999998               9999999999962111000              0111222222221111   


Q ss_pred             eeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 004885          546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       546 ~~~~~l~-~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-----~V~~IafsPd~~~Lasgs~Dg  619 (725)
                         ..+. .|...|.+|+|||||++||+++.||.|+|||...  ++..+. |..     .|.+++|+||+++|++|+.||
T Consensus        78 ---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A           78 ---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             ---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred             ---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence               1122 5678899999999999999999999999999654  666777 765     499999999999999999999


Q ss_pred             eEEEEECCCCCe------eeEEE----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee---EEEEe-c-CCC
Q 004885          620 TVRVWDTENPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-C-QSG  684 (725)
Q Consensus       620 tIrvWDl~~~~~------~l~~~----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~---v~~~~-~-~~~  684 (725)
                      +|+|||+..+..      .+.++    .+|...|.+++|+|+|   +++++.|++|++||+.++..   ..+++ + ...
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~  228 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK  228 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence            999999998752      35666    6677899999999998   56777899999999998774   35564 3 567


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |.+|+|+  +..|++++ +++|++||+.+++......||.+
T Consensus       229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~  266 (588)
T 2j04_A          229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE  266 (588)
T ss_dssp             CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred             EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence            9999999  57777775 79999999999888544447753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=4.6e-22  Score=220.20  Aligned_cols=190  Identities=21%  Similarity=0.346  Sum_probs=168.9

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++++|+.|+.|++|+...                   .+.+..+.+|.+.|.+++|+  +++|++|+.|++|++||+.+
T Consensus       130 ~~l~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVT-------------------GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             TEEEEEETTSCEEEEETTT-------------------CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEECCCcEEEEECCC-------------------CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence            3899999999999995432                   24567788999999999997  67999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~  666 (725)
                      ++.+..+.+|...|.+++|+  +.+|++|+.|++|++||+.++. ++..+.+|...|.+++|  ++. ++++++.|+.|+
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~  262 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVK  262 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEE
T ss_pred             CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEE
Confidence            99999999999999999996  5689999999999999999887 78889999999999999  444 677899999999


Q ss_pred             EEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          667 YWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       667 IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      +||+++++++..+.. ...|.+++|  ++.++++++.|+.|++||+++++++..+.+|.+
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            999999999998875 677999999  678999999999999999999999999998863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=8.7e-22  Score=216.97  Aligned_cols=196  Identities=17%  Similarity=0.308  Sum_probs=165.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +|++| .|++|++|+...+                 ....+..+.+|...|+||+|+|+|++||+|+.|++|+|||+.++
T Consensus       118 ~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          118 VLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            67766 5999999954333                 12233455688899999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                      +.+..+.+|...|.+++|+  +.+|++|+.|+.+++||.......+..+.+|...+..+.|+|++. ++++++.|+.|+|
T Consensus       180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i  256 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNV  256 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceE
Confidence            9999999999999999885  579999999999999999988778889999999999999999988 6779999999999


Q ss_pred             EECCCCee----EEEEe-cCCCeEEEEEecCCCEEE-EE--EcCCeEEEEECCCCeEEEEEeCCC
Q 004885          668 WSINNGSC----AGVFK-CQSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       668 wDl~t~~~----v~~~~-~~~~V~sv~fspdg~~Ll-a~--s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ||+.+++.    +..+. +...|.+++|+|++..++ ++  +.|++|+|||+++++++..+..|.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~  321 (420)
T 4gga_A          257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS  321 (420)
T ss_dssp             EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred             EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence            99987653    23333 467899999999876554 33  358999999999999999998774

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.9e-23  Score=229.08  Aligned_cols=198  Identities=20%  Similarity=0.211  Sum_probs=157.8

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .+|++|+.|++|++|+...                 .....+.....+...|.+++|+|++++|++|+.||.|++||++.
T Consensus       178 ~~l~s~s~D~~v~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~  240 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKG-----------------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG  240 (435)
T ss_dssp             TEEEEECSSSCEEEEETTS-----------------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred             CEEEEEeCCCEEEEeeccC-----------------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence            4899999999999995421                 12222333344556789999999999999999999999999864


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                       +.+..+.+|...|++|+|+|++. +|++|+.|++|+|||+++...  .+....+|...|++|+|+|++. +|++++.|+
T Consensus       241 -~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~  318 (435)
T 4e54_B          241 -KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKS  318 (435)
T ss_dssp             -CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSS
T ss_pred             -ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCC
Confidence             56678889999999999999865 788999999999999987652  2233467999999999999988 667999999


Q ss_pred             cEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEEeCC
Q 004885          664 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~------------Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .|+|||++++.+...+..+       ..+..+.|+|++..++++..            ++.|+|||+.+++++..+.++
T Consensus       319 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~  397 (435)
T 4e54_B          319 EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP  397 (435)
T ss_dssp             CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred             EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence            9999999998887766531       12455678888777766643            357999999999999988643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=9.9e-23  Score=218.79  Aligned_cols=162  Identities=10%  Similarity=0.097  Sum_probs=132.7

Q ss_pred             eeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEE-------
Q 004885          546 TEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRL-------  612 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSp---dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~L-------  612 (725)
                      +.+..+.+|...|+.++|++   ++.+|++|+.|++|+|||++++++++++.+|.   ..|.+++|+|++.++       
T Consensus       169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~  248 (356)
T 2w18_A          169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC  248 (356)
T ss_dssp             CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---
T ss_pred             ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC
Confidence            34556778999999999999   77999999999999999999999999998754   467888999999876       


Q ss_pred             -----EEEeCCCeEEEEECCCCCeeeEEE-----ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004885          613 -----ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-  681 (725)
Q Consensus       613 -----asgs~DgtIrvWDl~~~~~~l~~~-----~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-  681 (725)
                           ++|+.|++|++||..++. ++..+     .+|...+.+.+++  +. ++++++.|++|+|||+.+++++.++++ 
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             ---------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             CcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence                 567889999999999876 55544     3666665555554  44 788999999999999999999999985 


Q ss_pred             CCC-eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          682 QSG-ATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       682 ~~~-V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ... +..++|+|||.+|++|+.|++|+|||+
T Consensus       325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            334 446899999999999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=2.5e-23  Score=228.16  Aligned_cols=207  Identities=10%  Similarity=0.065  Sum_probs=151.3

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--------CCCEEEEEe
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG  574 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp--------dg~~LaSgs  574 (725)
                      .....++++|+.|++|++|+...+              .......+..+.+|.+.|.+++|+|        |+++||+|+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNE--------------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETT--------------EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCC--------------ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            344568999999999999954332              1122234556789999999999998        889999999


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeee--------------------
Q 004885          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL--------------------  633 (725)
Q Consensus       575 ~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~~~~~l--------------------  633 (725)
                      .|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||++++....                    
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            99999999999988888888999999999999986 579999999999999998765211                    


Q ss_pred             ----EEEecCCCCeEEEEEc-cCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C------------------CCeEEEE
Q 004885          634 ----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q------------------SGATQMR  689 (725)
Q Consensus       634 ----~~~~~h~~~V~sl~fs-P~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~------------------~~V~sv~  689 (725)
                          ....+|...|.++.|+ |++. .+++++.|++|++||+..+.....+.. .                  ..+..++
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred             ceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence                1124677889999997 6766 677999999999999987765544432 1                  1122234


Q ss_pred             Eec-CCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          690 FQP-RLGR-ILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       690 fsp-dg~~-Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      |+| .++. +++++.|+.|+|||+.+++++..+.+|.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            443 3344 4455669999999999998888877775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=4.1e-22  Score=220.37  Aligned_cols=192  Identities=24%  Similarity=0.405  Sum_probs=168.8

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      .+.++++|+.|+.|++|+...+                   +.+..+.+|...|.+++|+  +.+|++|+.|+.|++||+
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTG-------------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSC-------------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECCCC-------------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeC
Confidence            3458999999999999954332                   4567788999999999996  469999999999999999


Q ss_pred             CCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          585 ESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       585 ~~~~~i---~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      .++..+   ..+.+|...|.+++|  ++.+|++|+.|++|++||++++. ++..+.+|...|.++.|++  . ++++|+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~g~~  314 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRD--R-LVVSGSS  314 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEET--T-EEEEEET
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeCC--C-EEEEEeC
Confidence            876654   678899999999999  67899999999999999999987 7899999999999999953  3 7889999


Q ss_pred             CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe---------EEEEEeCCCC
Q 004885          662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV---------CRLKLQVSHS  725 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~---------~v~~l~GH~s  725 (725)
                      ||.|++||+++++++..+.. ...|.+++|  ++.+|++++.||.|+|||+++++         ++..+.+|.+
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~  386 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG  386 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC
Confidence            99999999999999999885 677999999  67899999999999999998776         9999999964

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.90  E-value=2.6e-21  Score=201.80  Aligned_cols=202  Identities=19%  Similarity=0.343  Sum_probs=173.3

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IW  582 (725)
                      ...++++++|+.|+.|++|....                   .+.+..+.+|...+.++.+  ++.+|++++.++.+++|
T Consensus        76 ~~~~~~l~sgs~Dg~v~iw~~~~-------------------~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           76 IKEGNYLAVGTSSAEVQLWDVQQ-------------------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHH  134 (318)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEeecCC-------------------ceeEEEecCccceEEEeec--CCCEEEEEecCCceEee
Confidence            34445999999999999994432                   2566778899999888776  56899999999999999


Q ss_pred             ECCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEE-
Q 004885          583 CTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLC-  657 (725)
Q Consensus       583 dl~~~-~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~lla-  657 (725)
                      +.... ..+..+.+|...+.++.|++++.+|++++.|++|++||++++..   .......|.+.|.++.++|.+..+++ 
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred             ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence            98764 56778899999999999999999999999999999999987642   34566678889999999999877664 


Q ss_pred             -EEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEEeCCCC
Q 004885          658 -SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       658 -Sgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                       +++.++.|++||.+.........+...+..++|+|++..+++++  .|+.|+|||+++++++.+|.||.+
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~  285 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS  285 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred             EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC
Confidence             45578899999999999988888888999999999999988876  589999999999999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.4e-23  Score=219.13  Aligned_cols=191  Identities=12%  Similarity=0.082  Sum_probs=153.7

Q ss_pred             CCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004885          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (725)
Q Consensus       504 ~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWd  583 (725)
                      ....++++|+.|+.|++|+...+.                   .+..+.  ...|.++.|+|+   +++++.|++|++|+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~-------------------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~  101 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSK-------------------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLY  101 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSS-------------------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCc-------------------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence            345689999999999999654331                   111221  355888889887   99999999999997


Q ss_pred             CC---------CCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeEEE-ecCCCCeEEEEEcc
Q 004885          584 TE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP  650 (725)
Q Consensus       584 l~---------~~~~i~~l~-~H~~~V~~IafsP--d~~~Lasgs~DgtIrvWDl~~~~~~l~~~-~~h~~~V~sl~fsP  650 (725)
                      ..         +...+..+. +|...|.+++|+|  ++.+|++++.|++|++||++++. ++..+ ..|...|.+++|+|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHK  180 (343)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECT
T ss_pred             ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECC
Confidence            65         444444443 6778999999999  99999999999999999999887 45555 34566899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeE-EEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          651 SKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       651 ~g~~llaSgs~Dg~I~IwDl~t~~~v-~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++. +|++|+.||.|+|||+++++++ ..+..  ...|++++|+|++.+|++++ |+.|+|||+++++++..+.
T Consensus       181 dg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          181 DSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             TSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             CCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence            987 7889999999999999999887 66664  67899999999999999988 5599999999987665544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=5e-21  Score=211.89  Aligned_cols=186  Identities=23%  Similarity=0.441  Sum_probs=166.3

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      ...+++|+.|+.|++|+...+                   +.+..+.+|...|.+++|  ++++|++|+.|+.|++||++
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~-------------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~  267 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETG-------------------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE  267 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSC-------------------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred             CCEEEEEeCCCEEEEEECCCC-------------------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence            457899999999999954322                   456677899999999999  78899999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                      +++.+..+.+|...|.+++|  ++.+|++++.|++|++||++++. ++..+.+|...+.++.+++  . ++++++.||.|
T Consensus       268 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i  341 (445)
T 2ovr_B          268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD--N-ILVSGNADSTV  341 (445)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEET--T-EEEEEETTSCE
T ss_pred             CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEEEEeC--C-EEEEEeCCCeE
Confidence            99999999999999999999  78899999999999999999988 7889999999999998864  3 78899999999


Q ss_pred             EEEECCCCeeEEEEe----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          666 RYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       666 ~IwDl~t~~~v~~~~----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ++||+++++++..+.    +...|++++|+  +.+|++++.||.|+|||+++++.+..+
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            999999999999887    35679999996  479999999999999999999999888

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4e-22  Score=237.29  Aligned_cols=207  Identities=15%  Similarity=0.217  Sum_probs=170.6

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+++.             ...++++|+.|+.|++|....                 .....+..+.+|...
T Consensus        52 h~~~V~~l~~s~~~-------------~~~~l~s~s~Dg~I~vwd~~~-----------------~~~~~~~~~~~h~~~  101 (753)
T 3jro_A           52 HEGPVWRVDWAHPK-------------FGTILASCSYDGKVLIWKEEN-----------------GRWSQIAVHAVHSAS  101 (753)
T ss_dssp             CSSCEEEEEECCTT-------------SCSEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSC
T ss_pred             CcCceEEEEecCCC-------------CCCEEEEEeCCCeEEEEECCC-----------------CcccccccccCCCCC
Confidence            44556666666641             134899999999999995322                 223466778899999


Q ss_pred             eEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCe
Q 004885          558 VESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRT  620 (725)
Q Consensus       558 V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~--~~i~~l~~H~~~V~~IafsP-------------d~~~Lasgs~Dgt  620 (725)
                      |++++|+|+  +++|++|+.||+|++||+++.  .....+.+|...|++++|+|             ++.+|++|+.||+
T Consensus       102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~  181 (753)
T 3jro_A          102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  181 (753)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred             eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence            999999999  999999999999999999876  34456788999999999999             5899999999999


Q ss_pred             EEEEECCCCC---eeeEEEecCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCCCee-----EE-EEecCCCeEEEE
Q 004885          621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSC-----AG-VFKCQSGATQMR  689 (725)
Q Consensus       621 IrvWDl~~~~---~~l~~~~~h~~~V~sl~fsP~g--~~llaSgs~Dg~I~IwDl~t~~~-----v~-~~~~~~~V~sv~  689 (725)
                      |++||++++.   .++..+.+|...|++++|+|++  ..++++++.||.|++||++++..     +. ...+...|++++
T Consensus       182 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  261 (753)
T 3jro_A          182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  261 (753)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE
T ss_pred             EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEE
Confidence            9999998764   3567788999999999999994  44788999999999999998642     11 112357799999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCC
Q 004885          690 FQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      |+|++.+|++++.||.|+|||++++
T Consensus       262 ~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          262 WSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9999999999999999999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=2.3e-21  Score=209.51  Aligned_cols=198  Identities=9%  Similarity=0.149  Sum_probs=157.2

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|++++.               ++++|+.| .+++|....                   ...+....  ...
T Consensus        18 h~~~V~~v~fs~dg~---------------~la~g~~~-~~~iw~~~~-------------------~~~~~~~~--~~~   60 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQS---------------CLILSTLK-SFEIYNVHP-------------------VAHIMSQE--MRH   60 (355)
T ss_dssp             -CCCCCEEEECTTSS---------------EEEEECSS-EEEEEEETT-------------------EEEEEEEE--CSC
T ss_pred             CCCceEEEEECCCCC---------------EEEEEcCC-EEEEEecCC-------------------cceeeeee--cCC
Confidence            456788999999887               88888766 578994321                   12222221  124


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---------------------------
Q 004885          558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---------------------------  609 (725)
Q Consensus       558 V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---------------------------  609 (725)
                      +..++|.++++.+ ++++.|++|+|||+.+++.+..+. |...|.+++|+++.                           
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  139 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF  139 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence            8889999988877 567788999999999999988886 66789999888753                           


Q ss_pred             --------CEEEE--EeCCCeEEEEECCCCC--------------ee-eEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          610 --------SRLAT--SSADRTVRVWDTENPD--------------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       610 --------~~Las--gs~DgtIrvWDl~~~~--------------~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                              .++++  |+.||.|++||+.++.              .+ +..+.+|...|++++|+|++. +|++|+.|++
T Consensus       140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~  218 (355)
T 3vu4_A          140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGT  218 (355)
T ss_dssp             EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCS
T ss_pred             CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCC
Confidence                    23333  4678888888887643              11 678899999999999999987 7789999998


Q ss_pred             -EEEEECCCCeeEEEEe---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          665 -IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       665 -I~IwDl~t~~~v~~~~---~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                       |+|||+++++++..+.   +...|++++|+|++.+|++++.|++|+|||++.+
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence             9999999999999998   5778999999999999999999999999999865

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.7e-22  Score=239.13  Aligned_cols=207  Identities=13%  Similarity=0.111  Sum_probs=163.3

Q ss_pred             ccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcCCCCEEEEEeC
Q 004885          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGH  575 (725)
Q Consensus       501 ~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~H~~~V~~i~fSpdg~~LaSgs~  575 (725)
                      .+.+..+++++|+.|++|++|+...+....           ...+.  ..+     .+|...|++|+|+||+++||+|+.
T Consensus       442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----------~~~~~--~~l~~~~~~~h~~~V~svafspdg~~LAsgs~  508 (902)
T 2oaj_A          442 LPAEYGTAFITGHSNGSVRIYDASHGDIQD-----------NASFE--VNLSRTLNKAKELAVDKISFAAETLELAVSIE  508 (902)
T ss_dssp             CCCSEEEEEEEEETTSEEEEEESSCCTTTT-----------TBCEE--EEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred             cccccCcEEEEecCCCcEEEEECCCccccC-----------CceEE--eechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence            344556799999999999999776542100           00000  011     289999999999999999999999


Q ss_pred             CCcEEEEECCCC---------------------------------------------eEEEEeccCCCCeEEEEEcCCCC
Q 004885          576 DKKAVLWCTESF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLS  610 (725)
Q Consensus       576 Dg~V~IWdl~~~---------------------------------------------~~i~~l~~H~~~V~~IafsPd~~  610 (725)
                      |++|+|||+.++                                             .++.++.+|.+.|++|+|+|+| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence            999999999765                                             2467888999999999999999 


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeE-----EEe-cCCCCeEEEEEc-----cCC--CeEEEEEeCCCcEEEEEC---CCCe
Q 004885          611 RLATSSADRTVRVWDTENPDYSLR-----TFT-GHSTTVMSLDFH-----PSK--EDLLCSCDNNSEIRYWSI---NNGS  674 (725)
Q Consensus       611 ~Lasgs~DgtIrvWDl~~~~~~l~-----~~~-~h~~~V~sl~fs-----P~g--~~llaSgs~Dg~I~IwDl---~t~~  674 (725)
                      +|++|+.|++|+|||++++. .+.     .+. +|.+.|++|+|+     |||  ..+|++++.|++|++||+   .+|+
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEEEeCCCcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999999999998765 332     233 889999999999     886  357889999999999999   7888


Q ss_pred             eEEEEec------CCCeEEEE-Ee----------------------cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          675 CAGVFKC------QSGATQMR-FQ----------------------PRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       675 ~v~~~~~------~~~V~sv~-fs----------------------pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ++..+..      ...|.+++ |+                      ++ .+++++ .+..|+||++.++++++.+.+|.
T Consensus       667 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~l~~-~~~~ir~~~~~~~k~~~k~~~~~  743 (902)
T 2oaj_A          667 FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP-GIVLIT-GFDDIRLITLGKSKSTHKGFKYP  743 (902)
T ss_dssp             EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC-EEEEEE-CSSEEEEECTTCCCEEEEECSSC
T ss_pred             EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC-eEEEEE-eccceEEEeCccccceeeEcccc
Confidence            8877754      35677776 66                      33 334444 48899999999999998887663

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.88  E-value=1.9e-20  Score=202.23  Aligned_cols=207  Identities=17%  Similarity=0.203  Sum_probs=171.4

Q ss_pred             CeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 004885          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (725)
Q Consensus       481 ~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~  560 (725)
                      .+..+.|++++.              .++++++.|+.|++|+...+                   +.+..+..|. .|.+
T Consensus        33 ~~~~~~~s~dg~--------------~l~~~~~~d~~i~v~d~~~~-------------------~~~~~~~~~~-~v~~   78 (391)
T 1l0q_A           33 NPMGAVISPDGT--------------KVYVANAHSNDVSIIDTATN-------------------NVIATVPAGS-SPQG   78 (391)
T ss_dssp             SEEEEEECTTSS--------------EEEEEEGGGTEEEEEETTTT-------------------EEEEEEECSS-SEEE
T ss_pred             CcceEEECCCCC--------------EEEEECCCCCeEEEEECCCC-------------------eEEEEEECCC-Cccc
Confidence            456777777665              24477889999999954222                   3344454444 8999


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          561 CHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       561 i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      ++|+|++++|+++ +.|+.|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+.++. .+..+..
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~  156 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSV  156 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEec
Confidence            9999999987654 56799999999999988888754 568999999999977 677889999999999877 5666665


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCe
Q 004885          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---IENYISILDVETQV  715 (725)
Q Consensus       639 h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s---~Dg~V~IwDl~tg~  715 (725)
                      + ..+.+++|+|+++.++++++.++.|++||+++++++..+.+...+.+++|+|++.+|++++   .++.|++||+++++
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            5 4579999999999887888889999999999999999988888899999999999999888   68999999999999


Q ss_pred             EEEEEeCCC
Q 004885          716 CRLKLQVSH  724 (725)
Q Consensus       716 ~v~~l~GH~  724 (725)
                      ++..+..|.
T Consensus       236 ~~~~~~~~~  244 (391)
T 1l0q_A          236 ITARIPVGP  244 (391)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEecCC
Confidence            999998774

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.6e-21  Score=219.95  Aligned_cols=190  Identities=11%  Similarity=0.109  Sum_probs=159.1

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC--
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS--  556 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~--  556 (725)
                      ...+.+++|+|+|.               .+++++.|+.|++|..                   ..  .+..+. |..  
T Consensus        85 ~~~V~~vawSPdG~---------------~LAs~s~dg~V~iwd~-------------------~~--~l~~l~-~~~~~  127 (588)
T 2j04_A           85 VCYPRVCKPSPIDD---------------WMAVLSNNGNVSVFKD-------------------NK--MLTNLD-SKGNL  127 (588)
T ss_dssp             SCCEEEEEECSSSS---------------CEEEEETTSCEEEEET-------------------TE--EEEECC-CSSCS
T ss_pred             CCcEEEEEECCCCC---------------EEEEEeCCCcEEEEeC-------------------Cc--eeeecc-CCCcc
Confidence            56799999999998               8999999999999931                   11  444455 555  


Q ss_pred             ---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 004885          557 ---KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVR  622 (725)
Q Consensus       557 ---~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-------~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIr  622 (725)
                         .|.+++|||||++||+|+.||+|+|||+.++.       .+.++    .+|...|.+++|+|++  +++++.|++|+
T Consensus       128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence               49999999999999999999999999998875       36676    6788899999999999  88899999999


Q ss_pred             EEECCCCCe--eeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEecCCCeEEEEE--ecCCCE
Q 004885          623 VWDTENPDY--SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQSGATQMRF--QPRLGR  696 (725)
Q Consensus       623 vWDl~~~~~--~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~~~~~V~sv~f--spdg~~  696 (725)
                      +||+.....  ...++ .+|...|.+|+|+  +. .+++++ +++|++||+.++.. ...+.+...|..|.|  +|++..
T Consensus       206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI  281 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred             EEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence            999988762  23456 4788899999999  44 666776 69999999998887 444466788999999  999888


Q ss_pred             EEEEEcCCeEEEEECC
Q 004885          697 ILAAAIENYISILDVE  712 (725)
Q Consensus       697 Lla~s~Dg~V~IwDl~  712 (725)
                      |+++..||+ ++|...
T Consensus       282 La~a~edG~-klw~~d  296 (588)
T 2j04_A          282 LLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEECSSCEE-EEEESS
T ss_pred             EEEEcCCCC-EEEeec
Confidence            888888999 999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=6.2e-21  Score=237.56  Aligned_cols=173  Identities=24%  Similarity=0.377  Sum_probs=161.6

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      ..+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|+|||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      +. ++..+.+|...|.+++|+|++ ..++++++.|+.|++||++++.++..+.. ...|++++|+|++.+|++++.|+.|
T Consensus       689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            88 789999999999999999963 34788999999999999999999988875 6789999999999999999999999


Q ss_pred             EEEECCCCeEEEEEeC
Q 004885          707 SILDVETQVCRLKLQV  722 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~G  722 (725)
                      ++||+++++++..+..
T Consensus       768 ~vwd~~~~~~~~~~~~  783 (1249)
T 3sfz_A          768 RLWDVRSANERKSINV  783 (1249)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCcccceecc
Confidence            9999999988887753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=2.9e-20  Score=193.88  Aligned_cols=195  Identities=17%  Similarity=0.315  Sum_probs=160.0

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +|++| .|++|++|+...+                 .......+.+|...|++++|+|++++|++|+.|++|+|||++++
T Consensus        38 ~lAvg-~D~tV~iWd~~tg-----------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           38 VLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             EEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            56765 5999999954332                 11222345678899999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                      +.+..+.+|...+.++.+.  +..+++++.++.+++|+.......+..+.+|...+..+.|++++. ++++++.|+.|++
T Consensus       100 ~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i  176 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNV  176 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeE
Confidence            9999999999998877664  579999999999999999988778889999999999999999988 6779999999999


Q ss_pred             EECCCCeeE----EEE-ecCCCeEEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          668 WSINNGSCA----GVF-KCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       668 wDl~t~~~v----~~~-~~~~~V~sv~fspdg~~Ll---a~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ||+++++..    ... .+...|.+++|+|++..++   +++.++.|++||.++.........+
T Consensus       177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred             EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence            999976532    222 2367799999999877544   3344799999999998877666543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.88  E-value=1.9e-21  Score=206.15  Aligned_cols=191  Identities=16%  Similarity=0.192  Sum_probs=150.5

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF--SPDGKLLATGGHDKKAVLW  582 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~f--Spdg~~LaSgs~Dg~V~IW  582 (725)
                      ...++++|+.|+.|++|.....                   . ...+.+|...|++++|  ++++++|++++.|+.|++|
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~~-------------------~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSSN-------------------Q-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTTT-------------------E-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEEcCCC-------------------C-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            3348999999999999954322                   1 2234579999999999  8999999999999999999


Q ss_pred             ECCCCeEEEEeccCC-----------------------------------------CCeEEEEEcCCCCE----EEEEeC
Q 004885          583 CTESFTVKSTLEEHT-----------------------------------------QWITDVRFSPSLSR----LATSSA  617 (725)
Q Consensus       583 dl~~~~~i~~l~~H~-----------------------------------------~~V~~IafsPd~~~----Lasgs~  617 (725)
                      |+++++.+..+..|.                                         ..+.++++.++...    +++++.
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            998877665554332                                         23444555444333    999999


Q ss_pred             CCeEEEEECCCCC--eeeEEEecCCC------------CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C
Q 004885          618 DRTVRVWDTENPD--YSLRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q  682 (725)
Q Consensus       618 DgtIrvWDl~~~~--~~l~~~~~h~~------------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~  682 (725)
                      |+.|++||++...  ..+..+.+|..            .|++++|+|++. +|++++.||.|+|||+++++++..+.. .
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLD  315 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence            9999999999864  25667777765            799999999987 667899999999999999999998876 6


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEE---EEECCCCeE
Q 004885          683 SGATQMRFQPRLGRILAAAIENYIS---ILDVETQVC  716 (725)
Q Consensus       683 ~~V~sv~fspdg~~Lla~s~Dg~V~---IwDl~tg~~  716 (725)
                      ..|++++|+|++.+|++++.|+.++   +|+.+....
T Consensus       316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~  352 (368)
T 3mmy_A          316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNY  352 (368)
T ss_dssp             SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCE
T ss_pred             CCceEEEECCCCCeEEEEecccccccccccCCCccce
Confidence            7899999999999999999987544   444554433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=2.9e-20  Score=203.72  Aligned_cols=197  Identities=7%  Similarity=0.038  Sum_probs=167.6

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT-GGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl  584 (725)
                      ..++++++.|+.|++|....                   .+.+..+..|...+.+++|+|+++++++ ++.|+.|++||+
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKT-------------------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTT-------------------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCEEEEEECCC-------------------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence            45889999999999995422                   2345566688999999999999998854 447999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--------CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEE
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      ++++.+..+..+ ..+.+++|+|++++|++++        .|+.|++||+.++. .+..+ .|...+.+++|+|+++.++
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~g~~l~  318 (433)
T 3bws_A          242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTI-GPPGNKRHIVSGNTENKIY  318 (433)
T ss_dssp             TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEE-EEEECEEEEEECSSTTEEE
T ss_pred             CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeec-cCCCCcceEEECCCCCEEE
Confidence            999988888764 4599999999999999888        58899999999876 34443 4556899999999998888


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc---------------CCeEEEEECCCCeEEEEEe
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~---------------Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++++.|+.|++||+.+++++..+.....+.+++|+|++.+|++++.               ||.|++||+.+++++..+.
T Consensus       319 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          319 VSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            8989999999999999999999888888999999999999888877               4699999999999999887


Q ss_pred             CCC
Q 004885          722 VSH  724 (725)
Q Consensus       722 GH~  724 (725)
                      ++.
T Consensus       399 ~~~  401 (433)
T 3bws_A          399 AGN  401 (433)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=2.4e-21  Score=212.35  Aligned_cols=207  Identities=8%  Similarity=0.016  Sum_probs=142.4

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+..+.|+|....       .....+++|++|+.|++|++|+....                   ..+..+..|..
T Consensus       134 gH~~~v~~v~~~p~~~~-------~~~~d~~~las~s~D~tv~~Wd~~~~-------------------~~~~~~~~~~~  187 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSA-------DNRLAEQVIASVGDDCTLIIWRLTDE-------------------GPILAGYPLSS  187 (393)
T ss_dssp             SCSSCEEEEEEEEEECT-------TCSEEEEEEEEEETTSEEEEEEEETT-------------------EEEEEEEECSS
T ss_pred             CCCCceEEEEEcccccc-------ccCCCCCEEEEEECCCeEEEEECCCC-------------------ceeeeecCCCC
Confidence            35566777777762210       00123469999999999999944222                   34556678899


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEE-------------------------eccCCCCeEEEEEc-CCC
Q 004885          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKST-------------------------LEEHTQWITDVRFS-PSL  609 (725)
Q Consensus       557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~-------------------------l~~H~~~V~~Iafs-Pd~  609 (725)
                      .|.+++|+|++. +|++|+.|++|++||+.++.....                         ..+|...|.++.|+ |++
T Consensus       188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg  267 (393)
T 4gq1_A          188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG  267 (393)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred             CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence            999999999875 899999999999999987654322                         24677889999987 699


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEE------------------Ecc-CCCeEEEEEeCCCcEEEEEC
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD------------------FHP-SKEDLLCSCDNNSEIRYWSI  670 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~------------------fsP-~g~~llaSgs~Dg~I~IwDl  670 (725)
                      ..|++++.|+++++||+.... ....+..|...+..+.                  |+| .+..++++++.||.|+|||+
T Consensus       268 ~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~  346 (393)
T 4gq1_A          268 SGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT  346 (393)
T ss_dssp             CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred             CEEEEEeCCCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence            999999999999999998765 3444444444433333                  333 34556778889999999999


Q ss_pred             CCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          671 NNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       671 ~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      .++.++..+. +...|.+|+|+|||++|++++.|| |.+|.+
T Consensus       347 ~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          347 YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            9988776654 477899999999999998887655 666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=3.5e-20  Score=200.24  Aligned_cols=194  Identities=16%  Similarity=0.174  Sum_probs=162.7

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~  585 (725)
                      .++++++.|+.|++|+...+                   +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            47788999999999954222                   3445566664 48999999999976 677789999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                      +++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.++. .+..+..+ ..+.+++|+|+++.++++++.|+.
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEeCC-CCcceEEECCCCCEEEEEeCCCCE
Confidence            999988887655 899999999999886554 67999999999877 56666544 568999999999988789999999


Q ss_pred             EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Ll-a~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      |++||+++++++..+..+..+.+++|+|++.+|+ +++.|+.|++||+++++++..+..+
T Consensus       140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  199 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (391)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999999998888899999999999885 4556899999999999998887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=3.3e-20  Score=199.18  Aligned_cols=169  Identities=12%  Similarity=0.057  Sum_probs=130.8

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEEC-CCCeEEEEeccCCCCeEEEEEcC
Q 004885          553 ASTSKVESCHFSPD----GKLLATGGH--------------------DKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSP  607 (725)
Q Consensus       553 ~H~~~V~~i~fSpd----g~~LaSgs~--------------------Dg~V~IWdl-~~~~~i~~l~~H~~~V~~IafsP  607 (725)
                      -+...|..++|+||    +.++++++.                    |+.|++|++ .+++.+..+.+|...++.++|++
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            34456788888888    777776553                    888899998 44778888888888888888888


Q ss_pred             ---CCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC---CCeEEEEEccCCCeE-----------EEEEeCCCcEEEEEC
Q 004885          608 ---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL-----------LCSCDNNSEIRYWSI  670 (725)
Q Consensus       608 ---d~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~---~~V~sl~fsP~g~~l-----------laSgs~Dg~I~IwDl  670 (725)
                         ++.+|++++.|++|+|||+.++. ++.++.+|.   ..|.+++|+|+|..+           +++|+.|++|++||.
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence               67899999999999999999988 788888654   467888999998754           367888999999999


Q ss_pred             CCCeeEEEEe-----c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          671 NNGSCAGVFK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       671 ~t~~~v~~~~-----~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .+++++..+.     . ...+.+.+++  +..+++++.|++|+|||+.+++++++|+||+
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~  325 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVS  325 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred             CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence            9999887663     1 2224444444  6788899999999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.85  E-value=7.3e-20  Score=200.51  Aligned_cols=202  Identities=10%  Similarity=0.104  Sum_probs=164.5

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++++.|+.|++|....+..              ........+.+|.+.|.+++|+++++++++++.|+.|++||+
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQT--------------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCE--------------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeE--------------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            345888888899999996543310              000011134689999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---  660 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs---  660 (725)
                      ++++.+..+..|...+.+++|+|+++++++++ .|+.|++||++++. .+..+..+ ..+.+++|+|++..+++++.   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence            99999999999999999999999999886554 79999999999876 56666544 45999999999986654443   


Q ss_pred             ----CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEeC
Q 004885          661 ----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       661 ----~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                          .|+.|++||+++++.+..+.+...+.+++|+|++++++++ +.|+.|++||+++++++..+..
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  343 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV  343 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence                4789999999999998888776789999999999876555 6699999999999999888763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=4.5e-20  Score=199.37  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=122.8

Q ss_pred             EEEEcCCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-
Q 004885          560 SCHFSPDGKLLAT--GGHDKKAVLWCTESFT----------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRT-  620 (725)
Q Consensus       560 ~i~fSpdg~~LaS--gs~Dg~V~IWdl~~~~----------------~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt-  620 (725)
                      .+++++  .++++  |+.||.|++||+.++.                ++..+.+|...|++++|+|++.+|++|+.|++ 
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            444554  55655  5789999999998765                26788999999999999999999999999998 


Q ss_pred             EEEEECCCCCeeeEEEe-c-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE--------------------E
Q 004885          621 VRVWDTENPDYSLRTFT-G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------------------V  678 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~-~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~--------------------~  678 (725)
                      |+|||++++. ++..+. + |...|.+++|+|++. +|++++.|++|+|||++.+....                    .
T Consensus       220 v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          220 IRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             EEEEETTTCC-EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             EEEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            9999999988 778887 5 999999999999988 67799999999999997653111                    1


Q ss_pred             Ee--c--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          679 FK--C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       679 ~~--~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      +.  .  ......++|++++.+|++++.||.+++|++..+
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            11  1  122477999999999999999999999998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=1e-19  Score=191.95  Aligned_cols=188  Identities=15%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++++++.|+.|++|.........          .....+.+..+. |...|.+++|++++  |++++.|+.|++||+++
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          113 DKLIAASWDGLIEVIDPRNYGDGV----------IAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBC----------EEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred             CEEEEEcCCCeEEEEccccccccc----------ccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence            389999999999999543200000          000011222333 78899999999877  99999999999999987


Q ss_pred             -Ce--EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----CeeeEEEecCCC---------CeEEEEE
Q 004885          587 -FT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-----DYSLRTFTGHST---------TVMSLDF  648 (725)
Q Consensus       587 -~~--~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~~~-----~~~l~~~~~h~~---------~V~sl~f  648 (725)
                       +.  .......|...|.+++|+| ++.+|++++.|+.|++||++..     ...+..+.+|..         .|.+++|
T Consensus       180 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (342)
T 1yfq_A          180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF  259 (342)
T ss_dssp             CTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred             cccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence             44  3345567889999999999 9999999999999999999887     236788888865         9999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCe-EEEEE
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENY-ISILD  710 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~-V~IwD  710 (725)
                      +|++. +|++++.||.|++||+++++++..+..  ...|++++  |++.+|++++.|++ .+.|.
T Consensus       260 s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          260 SPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             cCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            99988 567889999999999999999988875  46789998  99999999999998 44444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=4.1e-18  Score=188.43  Aligned_cols=207  Identities=11%  Similarity=0.100  Sum_probs=161.2

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCC---cEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD---NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~---~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ...+..+.|+|++.               .++.++.|+   .|++|....+                   + ...+..|.
T Consensus       178 ~~~v~~~~~Spdg~---------------~la~~s~~~~~~~i~~~d~~tg-------------------~-~~~l~~~~  222 (415)
T 2hqs_A          178 PQPLMSPAWSPDGS---------------KLAYVTFESGRSALVIQTLANG-------------------A-VRQVASFP  222 (415)
T ss_dssp             SSCEEEEEECTTSS---------------EEEEEECTTSSCEEEEEETTTC-------------------C-EEEEECCS
T ss_pred             CCcceeeEEcCCCC---------------EEEEEEecCCCcEEEEEECCCC-------------------c-EEEeecCC
Confidence            34577788888876               778888775   8899954322                   1 12455778


Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004885          556 SKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSpdg~~La-Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-Dg--tIrvWDl~~~  629 (725)
                      +.+.+++|+|||++|+ +++.|+.  |++||+.+++. ..+..|...+.+++|+|++++|++++. ++  .|.+||+.++
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            8899999999999877 6666654  99999988776 567788899999999999999988876 44  6778898876


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC---
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---  704 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg---  704 (725)
                      .  ...+..+...+.+++|+|+|+++++++..+  ..|++||+.++++.. +.....+.+++|+|+|.+|++++.++   
T Consensus       302 ~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~  378 (415)
T 2hqs_A          302 A--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGS  378 (415)
T ss_dssp             C--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred             C--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCcc
Confidence            5  455566777899999999999666555543  489999999988753 43345899999999999999988876   


Q ss_pred             eEEEEECCCCeEEEEEeCCCC
Q 004885          705 YISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      .|++||+. +.++..+.+|.+
T Consensus       379 ~l~~~d~~-g~~~~~l~~~~~  398 (415)
T 2hqs_A          379 VLNLVSTD-GRFKARLPATDG  398 (415)
T ss_dssp             EEEEEETT-SCCEEECCCSSS
T ss_pred             EEEEEECC-CCcEEEeeCCCC
Confidence            79999997 566777887753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=3.5e-19  Score=198.69  Aligned_cols=159  Identities=13%  Similarity=0.146  Sum_probs=130.5

Q ss_pred             CCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------e---EEEEeccCCCCeEEEEEcCC-CCEEEEEe
Q 004885          553 ASTSKVESCHFSPDGKLLA----TGGHDKKAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSS  616 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~La----Sgs~Dg~V~IWdl~~~--------~---~i~~l~~H~~~V~~IafsPd-~~~Lasgs  616 (725)
                      .|...|++++|+|++++|+    +|+.|++|+|||+.+.        +   .+..+.+|...|++|+|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4678899999999999999    7888999999998653        1   24566789999999999997 88999999


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------CCeEEE
Q 004885          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQM  688 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------~~V~sv  688 (725)
                      .|++|++||++++. .+....+|...|.+++|+|+|. +|++|+.||.|++||++ +.....+..+        ..|.++
T Consensus       170 ~Dg~v~iwD~~~~~-~~~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          170 ADGSIAVLQVTETV-KVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             TTSCEEEEEESSSE-EEEEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             CCCeEEEEEcCCCc-ceeeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            99999999999875 5666677889999999999987 56688899999999999 6655555431        168999


Q ss_pred             EEecCCCEEEEEE-cCC------eEEEEECCCC
Q 004885          689 RFQPRLGRILAAA-IEN------YISILDVETQ  714 (725)
Q Consensus       689 ~fspdg~~Lla~s-~Dg------~V~IwDl~tg  714 (725)
                      +|++++.++++.+ .||      .+++||+++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999866665443 343      3899999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=2.3e-17  Score=189.32  Aligned_cols=194  Identities=10%  Similarity=0.052  Sum_probs=161.5

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--  584 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl--  584 (725)
                      .++++++.|++|.+|+.                   .+.+.+.++..+.. +.+++|+|||++|++++.|++|++||+  
T Consensus       150 ~~~vs~~~d~~V~v~D~-------------------~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~  209 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDG-------------------DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA  209 (543)
T ss_dssp             EEEEEEGGGTEEEEEET-------------------TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCeEEEEEC-------------------CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcC
Confidence            47888999999999943                   22244556663333 899999999999999999999999999  


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCCeeeEEEec----------CC-CCeEEEEE
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDF  648 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsP----d~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~----------h~-~~V~sl~f  648 (725)
                      .+++++.++. +...+..++|+|    ++++|++++. +++|.|||..+.+ ++..+..          |. ..+.++.|
T Consensus       210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~  287 (543)
T 1nir_A          210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIA  287 (543)
T ss_dssp             SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEE
Confidence            7888888887 456689999999    9999999885 8999999999887 6666653          22 37899999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~--~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +|++..++++...++.|.+||+.+.+.+.  .+.....+..+.|+|+|++|++++. +++|.|||+++++++..+..
T Consensus       288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            99999899999999999999998866544  5555667889999999998887765 79999999999999999885

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.78  E-value=1.8e-17  Score=183.31  Aligned_cols=171  Identities=19%  Similarity=0.187  Sum_probs=139.0

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR  622 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg---~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dg--tIr  622 (725)
                      ..+.+|...|.+++|+|||++|++++.|+   .|++||+.+++.. .+..|...+.+++|+|++++|+ +++.|+  .|+
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            45567888999999999999999999885   9999999988775 5667888999999999999887 666655  499


Q ss_pred             EEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~  700 (725)
                      +||+.++.  ...+..|...+.+++|+|+|+.+++++..++  .|++||+.++++.....+...+.+++|+|+|++|+++
T Consensus       251 ~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          251 VMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence            99998876  4677788889999999999997766665455  6788899888754433345678899999999999988


Q ss_pred             EcC---CeEEEEECCCCeEEEEEeCC
Q 004885          701 AIE---NYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       701 s~D---g~V~IwDl~tg~~v~~l~GH  723 (725)
                      +.+   ..|++||+.++++. .+..|
T Consensus       329 ~~~~g~~~i~~~d~~~~~~~-~l~~~  353 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGVQ-VLSST  353 (415)
T ss_dssp             EECSSCEEEEEEETTTCCEE-ECCCS
T ss_pred             ECcCCceEEEEEECCCCCEE-EecCC
Confidence            874   58999999998774 44443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.9e-16  Score=167.59  Aligned_cols=164  Identities=11%  Similarity=0.135  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      +.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.++. .+..
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-ILSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EEEE
Confidence            78999999999877776  47899999999999998887666778999999999999999999999999999877 4555


Q ss_pred             Eec----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885          636 FTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD  710 (725)
Q Consensus       636 ~~~----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD  710 (725)
                      +..    +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..... ..++|+|++++++++. .++.|.+||
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            543    4556889999999998887777779999999999999888876443 6799999999877776 589999999


Q ss_pred             CCCCeEEEEEeCC
Q 004885          711 VETQVCRLKLQVS  723 (725)
Q Consensus       711 l~tg~~v~~l~GH  723 (725)
                      +.+++.+..+..+
T Consensus       301 ~~~~~~~~~~~~~  313 (353)
T 3vgz_A          301 AKSYKVVKTFDTP  313 (353)
T ss_dssp             TTTTEEEEEEECC
T ss_pred             CCCCeEEEEEecC
Confidence            9999998887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=2e-17  Score=168.99  Aligned_cols=209  Identities=12%  Similarity=0.117  Sum_probs=151.6

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCC-CCCCCCccccccccCCCceeeeEEEecCC-CC
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVGRSAEVGKGFTFTEFQLIPAS-TS  556 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~  556 (725)
                      ...+..+.|+|++.               ++++++ ++.|.+|.... .                   .....+..| ..
T Consensus        41 ~~~v~~~~~spdg~---------------~l~~~~-~~~i~~~d~~~~~-------------------~~~~~~~~~~~~   85 (297)
T 2ojh_A           41 PELFEAPNWSPDGK---------------YLLLNS-EGLLYRLSLAGDP-------------------SPEKVDTGFATI   85 (297)
T ss_dssp             SSCCEEEEECTTSS---------------EEEEEE-TTEEEEEESSSCC-------------------SCEECCCTTCCC
T ss_pred             CcceEeeEECCCCC---------------EEEEEc-CCeEEEEeCCCCC-------------------CceEeccccccc
Confidence            34567777887776               677765 78999995543 2                   111222333 46


Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCcEEEE--ECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCe
Q 004885          557 KVESCHFSPDGKLLATGG--HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDY  631 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs--~Dg~V~IW--dl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~  631 (725)
                      .|.+++|+|++++|++++  .++.+.||  ++.++. ...+..+ ..+.+++|+|++++|+ +++.|+.++||+++....
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            789999999999999998  33455555  444444 3444443 3489999999999877 778899999999754333


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC------
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE------  703 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D------  703 (725)
                      ....+..+...+.+++|+|++..+++++..++.++||+++ .+..+..+.. ...+.+++|+|++.+|++++.+      
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence            4667777888999999999999777677678899999886 4555555543 4568899999999999888775      


Q ss_pred             -----CeEEEEECCCCeE--EEEEeCCC
Q 004885          704 -----NYISILDVETQVC--RLKLQVSH  724 (725)
Q Consensus       704 -----g~V~IwDl~tg~~--v~~l~GH~  724 (725)
                           +.|++||+.+++.  +..+.+|.
T Consensus       244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~  271 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNVETLFDLFGGQ  271 (297)
T ss_dssp             CSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred             cccCceEEEEEecCCCCceeeeccCCCC
Confidence                 5699999998854  55555654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=1.9e-16  Score=166.03  Aligned_cols=190  Identities=13%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-C----CCCCeEEEEEcCCCCEEEEEe--------
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-A----STSKVESCHFSPDGKLLATGG--------  574 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~----H~~~V~~i~fSpdg~~LaSgs--------  574 (725)
                      ++++++.++.|.+|.....                   +.+..+. +    |...+.+++|+|++++|++++        
T Consensus        48 l~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           48 AYATVNKSESLVKIDLVTG-------------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             EEEEETTTTEEEEEETTTC-------------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             EEEEeCCCCeEEEEECCCC-------------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccc
Confidence            4566667889999954332                   1111121 1    122577899999999998886        


Q ss_pred             ----CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe-------------
Q 004885          575 ----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-------------  637 (725)
Q Consensus       575 ----~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~-------------  637 (725)
                          .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|.+||+.++. .+..+.             
T Consensus       109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~s~d  184 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTTTTTTBCCCB
T ss_pred             cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-EeeeeeccccCCCceeCCC
Confidence                579999999999888877764 4568889999999988888  6889999988654 222221             


Q ss_pred             -----------------------------------------------------cCCCCeEEEEEccCCCeEEEEEeCCCc
Q 004885          638 -----------------------------------------------------GHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (725)
Q Consensus       638 -----------------------------------------------------~h~~~V~sl~fsP~g~~llaSgs~Dg~  664 (725)
                                                                           .+...+.+++|+|+++.++++   ++.
T Consensus       185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~  261 (337)
T 1pby_B          185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNV  261 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESE
T ss_pred             ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCe
Confidence                                                                 112235579999999865544   689


Q ss_pred             EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       665 I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      |++||+.+++.+..+.....+.+++|+|++++|++++.++.|++||+++++.+..++.+
T Consensus       262 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            99999999999988887778999999999999999888999999999999999998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=2.9e-16  Score=165.41  Aligned_cols=196  Identities=10%  Similarity=0.036  Sum_probs=147.3

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCT  584 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg---~V~IWdl  584 (725)
                      +++++..++.|.+|....+.                 . ....+..+...+.+++|+|++++|+++..++   .|.+||+
T Consensus        54 l~~~~~~~~~i~~~d~~~~~-----------------~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEP-----------------P-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSS-----------------C-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             EEEEeCCCCeEEEEECCCCc-----------------e-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            33444447889888543221                 0 1344455666666699999999999655553   8999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCe-EEEEECCCCCeee---EEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT-VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       585 ~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~Dgt-IrvWDl~~~~~~l---~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      .+++.+..+.. ...+.+++|+|++++|+++ ..++. |.+|++.......   .........+..++|+|+|+++++++
T Consensus       116 ~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          116 LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence            99998887765 4457999999999866554 55678 9999998654221   12223445689999999999888888


Q ss_pred             eCCCcEEEEECCCCee---EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeE--EEEEeC
Q 004885          660 DNNSEIRYWSINNGSC---AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC--RLKLQV  722 (725)
Q Consensus       660 s~Dg~I~IwDl~t~~~---v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~--v~~l~G  722 (725)
                      ..++.|++||+.+++.   +..+.....+..++|+|+|++++++.. ++.|.+||++++++  +..+..
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence            8899999999999988   888877778899999999998877654 68899999999977  555543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=5.2e-16  Score=178.08  Aligned_cols=200  Identities=12%  Similarity=0.112  Sum_probs=154.4

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC----CCCEEEEEeC-CCcEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DGKLLATGGH-DKKAV  580 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSp----dg~~LaSgs~-Dg~V~  580 (725)
                      .+++++++.|+.|.+|+...                 .+.+.+..+. +...+..++|+|    ||++|+++++ +++|.
T Consensus       190 g~~l~v~~~d~~V~v~D~~~-----------------~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~  251 (543)
T 1nir_A          190 GRYLLVIGRDARIDMIDLWA-----------------KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  251 (543)
T ss_dssp             SCEEEEEETTSEEEEEETTS-----------------SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             CCEEEEECCCCeEEEEECcC-----------------CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence            34899999999999995410                 1223445555 345689999999    9999998885 89999


Q ss_pred             EEECCCCeEEEEecc----------CC-CCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          581 LWCTESFTVKSTLEE----------HT-QWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       581 IWdl~~~~~i~~l~~----------H~-~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                      |||..+++++.++..          |. ..+..|.++|++.. +++...+++|.+||+.+..........+...+.++.|
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~  331 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGW  331 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceE
Confidence            999999999888764          22 37899999997655 5666778999999998866333223346677889999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeEEEEEecCCCEEEEEE--cCCeEEEEECCC-------C
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAA--IENYISILDVET-------Q  714 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-----~~V~sv~fspdg~~Lla~s--~Dg~V~IwDl~t-------g  714 (725)
                      +|+|+++++++..+++|.+||+.+++++..+...     +....+ ++|+++.+++++  .|++|.|||+.+       +
T Consensus       332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence            9999988888888899999999999999888741     123333 578866655554  479999999999       8


Q ss_pred             eEEEEEeCCC
Q 004885          715 VCRLKLQVSH  724 (725)
Q Consensus       715 ~~v~~l~GH~  724 (725)
                      ++++++++|.
T Consensus       411 ~~v~~l~~~g  420 (543)
T 1nir_A          411 KKVAELQGQG  420 (543)
T ss_dssp             SEEEEEECSC
T ss_pred             eEEEEEEcCC
Confidence            9999999884

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=1.1e-16  Score=178.49  Aligned_cols=209  Identities=12%  Similarity=0.085  Sum_probs=150.3

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEE----EeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVD----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~la----sGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...+..+.|++++.               +++    +|+.|+.|++|+........        ......+..+..+.+|
T Consensus        92 ~~~v~~l~~spdg~---------------~lav~~~sgs~d~~v~iwd~~~~~~~~--------~~~~~~~~~~~~~~~h  148 (434)
T 2oit_A           92 KFPIHHLALSCDNL---------------TLSACMMSSEYGSIIAFFDVRTFSNEA--------KQQKRPFAYHKLLKDA  148 (434)
T ss_dssp             SSCEEEEEECTTSC---------------EEEEEEEETTTEEEEEEEEHHHHHCTT--------CSSCCCSEEEECCCSG
T ss_pred             CCcccEEEEcCCCC---------------EEEEEEeccCCCceEEEEEccccccCC--------cCCcceeeeeeccCCC
Confidence            44678889998876               666    79999999999543221000        0011223345667789


Q ss_pred             CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       555 ~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ...|++++|+|+ +++|++++.||+|+|||++++..+....+|...|++++|+|++++|++|+.|++|++||++ +. ..
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~  226 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EK  226 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-cc
Confidence            999999999997 7899999999999999999987777777899999999999999999999999999999998 44 34


Q ss_pred             EEEecC-------CCCeEEEEEccCCCeEEEEEeCCCc------EEEEECCCCe-----eEEEEe-------c-CCCeEE
Q 004885          634 RTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINNGS-----CAGVFK-------C-QSGATQ  687 (725)
Q Consensus       634 ~~~~~h-------~~~V~sl~fsP~g~~llaSgs~Dg~------I~IwDl~t~~-----~v~~~~-------~-~~~V~s  687 (725)
                      ..+..|       ...|.+++|++++..+++++..||.      +++||+++..     ....+.       . ..+..-
T Consensus       227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  306 (434)
T 2oit_A          227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYY  306 (434)
T ss_dssp             EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEE
T ss_pred             ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCccee
Confidence            444433       2379999999987755555555543      8999998642     111111       0 112233


Q ss_pred             EEEecCCCEEEEEEc-CCeEEEEECC
Q 004885          688 MRFQPRLGRILAAAI-ENYISILDVE  712 (725)
Q Consensus       688 v~fspdg~~Lla~s~-Dg~V~IwDl~  712 (725)
                      +.+-++.+.+++++. .+.|.|+...
T Consensus       307 ~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          307 LSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             EEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             eehhccCCEEEEecCCCCceeEEEec
Confidence            444477777777766 4567777653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=1e-16  Score=163.68  Aligned_cols=192  Identities=14%  Similarity=0.122  Sum_probs=142.2

Q ss_pred             EEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ce
Q 004885          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FT  588 (725)
Q Consensus       510 asGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~  588 (725)
                      ..++.|+.|.+|.....                    ....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++
T Consensus        16 ~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTR--------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS   74 (297)
T ss_dssp             --CCCCEEEEEEETTTT--------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred             CCCCcceeEEEEeCCCC--------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence            34567889999944222                    1223456788999999999999999987 78999999998 87


Q ss_pred             EEEEeccC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          589 VKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       589 ~i~~l~~H-~~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                      ....+..| ...|.+++|+|++++|++++  .++.++||.++........+..+. .+..++|+|+++.+++++..++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~  153 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVF  153 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEE
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCce
Confidence            77666666 37789999999999999998  345556655543222344454443 489999999999888788889999


Q ss_pred             EEEEC--CCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECC-CCeEEEEEeCC
Q 004885          666 RYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQVS  723 (725)
Q Consensus       666 ~IwDl--~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~-tg~~v~~l~GH  723 (725)
                      +||++  .++.......+...+.+++|+|++.+|++++. ++.++||++. .+..+..+..|
T Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~  215 (297)
T 2ojh_A          154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS  215 (297)
T ss_dssp             EEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred             EEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence            99985  44544433344677999999999998887775 8899999886 45556666555

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.73  E-value=9e-16  Score=161.21  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=141.8

Q ss_pred             cEEEEeeCC-CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004885          507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT  584 (725)
Q Consensus       507 ~~lasGs~D-~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl  584 (725)
                      +++++++.+ +.|.+|.....               ...+..+..+..+. .+.+++|+|++++|++++. ++.|.+||+
T Consensus        50 ~~l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           50 RYLYVGVRPEFRVLAYRIAPD---------------DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTT---------------TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEeecCCCeEEEEEecCC---------------CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            367777665 89999955311               11223344444444 7899999999998877665 889999999


Q ss_pred             C---CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCeeeE----EEec-CCCCeEEEEEccCCCe
Q 004885          585 E---SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLR----TFTG-HSTTVMSLDFHPSKED  654 (725)
Q Consensus       585 ~---~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~-~~~~l~----~~~~-h~~~V~sl~fsP~g~~  654 (725)
                      .   ..+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ +. ...    .+.. ....+.+++|+|++++
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECCCCCE
Confidence            4   34455555543 4589999999999888887 899999999987 43 221    2222 3457889999999997


Q ss_pred             EEEEEeCCCcEEEEECCC--Cee--EEEEec-------CCCeEEEEEecCCCEEEEEE-cCCeEEEEECC----CCeEEE
Q 004885          655 LLCSCDNNSEIRYWSINN--GSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-IENYISILDVE----TQVCRL  718 (725)
Q Consensus       655 llaSgs~Dg~I~IwDl~t--~~~--v~~~~~-------~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl~----tg~~v~  718 (725)
                      +++++..++.|++||++.  +..  +..+..       ...+..++|+|++++|+++. .++.|.+||+.    +.+.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            877777899999999953  433  223321       12466899999999888666 58999999998    335666


Q ss_pred             EEeCC
Q 004885          719 KLQVS  723 (725)
Q Consensus       719 ~l~GH  723 (725)
                      .+..+
T Consensus       272 ~~~~~  276 (343)
T 1ri6_A          272 FQPTE  276 (343)
T ss_dssp             EEECS
T ss_pred             eecCC
Confidence            66543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.72  E-value=7.7e-16  Score=162.16  Aligned_cols=196  Identities=12%  Similarity=0.090  Sum_probs=150.4

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl  584 (725)
                      ..++++++.++.|.+|+...+                   +.+..+..+...+ +++|+|++++|++++. ++.|++||+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            346778888999999954322                   2333444455556 9999999997776665 889999999


Q ss_pred             CCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       585 ~~~~~-i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg---tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      .+++. ...+..+..++.+++|+|++++|+++..++   .|.+||+.++. .+..+.. ...+.+++|+|+|+++++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPI-PYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred             CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEEC-CCCccceEECCCCCEEEEEec
Confidence            99887 777777777766699999999999555553   89999999876 5565554 345799999999998888877


Q ss_pred             CCCc-EEEEECCCCeeE-----EEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeE---EEEEeCC
Q 004885          661 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQVS  723 (725)
Q Consensus       661 ~Dg~-I~IwDl~t~~~v-----~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~---v~~l~GH  723 (725)
                      .++. |++|++.....+     ..+.....+..++|+|+|+++++++. ++.|++||+++++.   +..+..+
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~  220 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN  220 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence            7788 999999864333     22233566899999999997777664 79999999999987   7777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=2.1e-15  Score=158.40  Aligned_cols=197  Identities=15%  Similarity=0.179  Sum_probs=139.4

Q ss_pred             EEEEe-eCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 004885          508 FVDDG-SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE  585 (725)
Q Consensus       508 ~lasG-s~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~  585 (725)
                      +++++ ..++.|.+|...                ++.....+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.
T Consensus        97 ~l~~~~~~~~~i~~~d~~----------------~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           97 FVFVGSYNAGNVSVTRLE----------------DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             EEEEEETTTTEEEEEEEE----------------TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEecCCCeEEEEECC----------------CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            55444 457889999442                11223344444443 4589999999999888887 89999999998


Q ss_pred             C-CeEEE----Eecc-CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC--CCee-eEEEe----cC--CCCeEEEEEc
Q 004885          586 S-FTVKS----TLEE-HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN--PDYS-LRTFT----GH--STTVMSLDFH  649 (725)
Q Consensus       586 ~-~~~i~----~l~~-H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~--~~~~-l~~~~----~h--~~~V~sl~fs  649 (725)
                      + ++...    .+.. ....+.+++|+|++++|++++ .++.|++||++.  +... ...+.    ++  ...+.+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence            7 54432    2222 345788999999999776555 789999999964  3211 22222    11  2356789999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECC--C--CeeEEEEecCCCeEEEEEecCCCEEEEEE-cCCeEEEE--ECCCC--eEEEEE
Q 004885          650 PSKEDLLCSCDNNSEIRYWSIN--N--GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISIL--DVETQ--VCRLKL  720 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~--t--~~~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V~Iw--Dl~tg--~~v~~l  720 (725)
                      |+++.+++++..++.|++||+.  +  .+.+..+.....+..++|+|++.+|++++ .++.|.||  |.+++  +.+..+
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence            9999888788789999999998  3  34555555555699999999999988888 47999999  55566  445555


Q ss_pred             e
Q 004885          721 Q  721 (725)
Q Consensus       721 ~  721 (725)
                      .
T Consensus       320 ~  320 (343)
T 1ri6_A          320 A  320 (343)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=4.6e-15  Score=156.92  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=135.3

Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCC---------eEEEEEcCCCCEEEEEe--CCCeEEE
Q 004885          556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQW---------ITDVRFSPSLSRLATSS--ADRTVRV  623 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~---------V~~IafsPd~~~Lasgs--~DgtIrv  623 (725)
                      ..+.+++|+|+++++++ +..++.|.+||..+++.+..+..+...         +.+++|+|+++++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            34788999999996554 555799999999999988887665432         78999999999887776  4789999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Ll  698 (725)
                      ||+.++. .+..+..+...+.+++|+|+++.++ +++.++.|.+||+.+++.+..+..     ...+..++|+|++++++
T Consensus       169 ~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          169 VDGGNIK-LKTAIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EETTTTE-EEEEECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EcCCCCc-eEEEecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            9999877 5666665666688999999998555 566689999999999999888764     33478899999999888


Q ss_pred             EEEc-CCeEEEEECCCCeEEEEEeCC
Q 004885          699 AAAI-ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       699 a~s~-Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +++. ++.|.+||+.+++.+..+..+
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            7776 499999999999998887643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=1.8e-15  Score=159.48  Aligned_cols=159  Identities=10%  Similarity=0.069  Sum_probs=125.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 004885          557 KVESCHFSPDGKLLATGGHD------------KKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~D------------g~V~IWdl~~~---~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtI  621 (725)
                      .+.+++|+|||++|++++.+            +.|.+||+.++   +.+..+. +...+.+++|+|+++ +++++.  .|
T Consensus        93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i  168 (349)
T 1jmx_B           93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DI  168 (349)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SE
T ss_pred             cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cE
Confidence            37899999999999998865            89999999874   3334444 344688999999999 666543  49


Q ss_pred             EEEECCCCCeeeEEEecCC-------------------------------------------------------------
Q 004885          622 RVWDTENPDYSLRTFTGHS-------------------------------------------------------------  640 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~-------------------------------------------------------------  640 (725)
                      .+||+.++. .+..+..+.                                                             
T Consensus       169 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (349)
T 1jmx_B          169 YKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  247 (349)
T ss_dssp             EEECTTTCC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             EEEeCCCCc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence            999998876 344333221                                                             


Q ss_pred             -------CCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          641 -------TTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       641 -------~~V~sl~fsP-~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                             ..+.+++|+| +++.++++   ++.|++||+.+++.+..+.....+.+++|+|++++|++++.++.|++||++
T Consensus       248 ~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          248 QEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             cccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence                   1356778889 98855544   789999999999998888876778999999999999888889999999999


Q ss_pred             CCeEEEEEeCC
Q 004885          713 TQVCRLKLQVS  723 (725)
Q Consensus       713 tg~~v~~l~GH  723 (725)
                      +++.+..++.+
T Consensus       325 ~~~~~~~~~~~  335 (349)
T 1jmx_B          325 TLEKVKNIKLP  335 (349)
T ss_dssp             TTEEEEEEECS
T ss_pred             ccceeeeeecC
Confidence            99999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.69  E-value=6.4e-16  Score=181.87  Aligned_cols=224  Identities=12%  Similarity=0.018  Sum_probs=154.3

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeC-CC-----cEEEecCCCCCCCCCccccccc-cC-----CCceee
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DD-----NVESFLSPDDADPRDRVGRSAE-VG-----KGFTFT  546 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~-D~-----~V~vw~s~~~~~~~~~~~~~~~-~~-----~~~~~~  546 (725)
                      ...+..+.|+|||.               ++++++. |+     .|.+|....+............ ..     +.....
T Consensus        36 ~~~~~~~~~SpdG~---------------~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS---------------RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR  100 (741)
T ss_dssp             CCCCEEEEECTTSS---------------EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred             CCCCCCceEecCCC---------------EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence            44578899999997               7787777 87     7899966544211110000000 00     000000


Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      +...+. ....|.+++|||||++|++++. +.|++||+.++.  .+..+..|...+.+++|+||+++|++++ ++.|++|
T Consensus       101 ~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~  177 (741)
T 2ecf_A          101 ERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI  177 (741)
T ss_dssp             -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             hhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence            000000 0134889999999999999886 899999998872  3446777888999999999999999887 5689999


Q ss_pred             ECCCCCeeeEEEecCCCC----------------eEEEEEccCCCeEEEEEeCCC-------------------------
Q 004885          625 DTENPDYSLRTFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS-------------------------  663 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~----------------V~sl~fsP~g~~llaSgs~Dg-------------------------  663 (725)
                      |+.++. .......+...                +.+++|+|+|+.++++.. |+                         
T Consensus       178 d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          178 DLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             ETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             ecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCC
Confidence            998865 33333333322                478999999996665443 33                         


Q ss_pred             --------cEEEEECCC-CeeEEEEe---cCCCeEEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeCC
Q 004885          664 --------EIRYWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       664 --------~I~IwDl~t-~~~v~~~~---~~~~V~sv~fspdg~~Lla~s~-----Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                              .|++||+.+ +++.....   +...+..++| |||++|++++.     +..|++||+.++++...+..|
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  331 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET  331 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence                    788999998 87655442   2456899999 99999988765     467999999999888777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.68  E-value=2.2e-16  Score=185.16  Aligned_cols=203  Identities=13%  Similarity=0.072  Sum_probs=148.3

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---Ce
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KV  558 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V  558 (725)
                      ...+.|+||+.               ++++ +.|++|++|....+                   +....+..|..   .|
T Consensus        19 ~~~~~~spdg~---------------~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v   63 (723)
T 1xfd_A           19 DPEAKWISDTE---------------FIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRA   63 (723)
T ss_dssp             CCCCCBSSSSC---------------BCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTC
T ss_pred             ccccEEcCCCc---------------EEEE-eCCCCEEEEECCCC-------------------cEEEEecccccccccc
Confidence            34567888775               4544 57889999943222                   22344455554   49


Q ss_pred             EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          559 ESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      .+++|||||++|++++.+         +.|++||+.+++. ..+   .+|...+.+++|+||+++|+.++. +.|++||+
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~  141 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH  141 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred             ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence            999999999999999875         7788999998775 333   344556899999999999999885 79999999


Q ss_pred             CCCCeeeEEEecCCCC------------------eEEEEEccCCCeEEEEEeCC--------------------------
Q 004885          627 ENPDYSLRTFTGHSTT------------------VMSLDFHPSKEDLLCSCDNN--------------------------  662 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~------------------V~sl~fsP~g~~llaSgs~D--------------------------  662 (725)
                      .++. .......+...                  +.+++|+|+|+.++++...+                          
T Consensus       142 ~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          142 VGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCc-eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            9876 44444443333                  37899999999665444321                          


Q ss_pred             -------CcEEEEECCCCeeEEEEec-------CCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEEeC
Q 004885          663 -------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       663 -------g~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~~v~~l~G  722 (725)
                             ..|++||+.++++...+..       ...+.+++|+|||++|++...    +..|++||+.++++...+..
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence                   1799999998886555543       345889999999988766654    25799999999988776654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=7.5e-15  Score=153.71  Aligned_cols=191  Identities=13%  Similarity=0.119  Sum_probs=144.0

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-CCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC  583 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~-~V~~i~fSpdg~~La-Sgs~Dg~V~IWd  583 (725)
                      .++++++.|+.|.+|+....                   +.+..+. ++.. .+.+++|+|++++++ +++.++.|.+||
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d   62 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence            47889999999999944222                   2333333 2222 488999999998664 555678999999


Q ss_pred             CCCCeEEEEecc-C----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeEEEecCCCCeEEE
Q 004885          584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (725)
Q Consensus       584 l~~~~~i~~l~~-H----~~~V~~IafsPd~~~Lasgs------------~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl  646 (725)
                      +.+++.+..+.. +    ...+.+++|+|++++|++++            .++.|.+||+.++. .+..+.. ...+.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-PRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-CSSCCCE
T ss_pred             CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-CCCccee
Confidence            999888776653 2    22678899999999998886            57999999998876 4555543 4567889


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------------------------------------
Q 004885          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------------------------------------  682 (725)
Q Consensus       647 ~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------------------------------------------  682 (725)
                      +|+|+++.++++   ++.|++||+.+++.+..+...                                            
T Consensus       141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence            999999866654   578999999988776554321                                            


Q ss_pred             -----------------------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          683 -----------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       683 -----------------------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                                             ..+.+++|+|++++++++  ++.|++||+++++.+..+..+
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~  279 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP  279 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC
Confidence                                   123468999999998887  799999999999998887643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.67  E-value=4.1e-14  Score=150.56  Aligned_cols=163  Identities=9%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEE--EEeccC-CCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCC-
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVK--STLEEH-TQWITDVRFSPSLSRLATS-SADRTVRVWDTEN-  628 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-~~~~i--~~l~~H-~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~-  628 (725)
                      ...+.+++|+|||+++++...++.|++|++. +++..  ..+..+ ...+..++|+|++++|+++ ..++.|++|+++. 
T Consensus       140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            3458999999999966666678899999998 45432  222222 3467889999999976664 5688999999885 


Q ss_pred             -CCe-eeEEEecCC------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC---CeeEEEEec-CCCeEEEEEecCCCE
Q 004885          629 -PDY-SLRTFTGHS------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLGR  696 (725)
Q Consensus       629 -~~~-~l~~~~~h~------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t---~~~v~~~~~-~~~V~sv~fspdg~~  696 (725)
                       +.. .+..+....      ..+..++|+|+|+++++++..++.|.+||+..   ...+..+.. ...+..++|+|+|++
T Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred             CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence             321 122333222      34889999999998888888899999999973   244455554 446899999999999


Q ss_pred             EEEEEcC-CeEEEE--ECCCCeEE
Q 004885          697 ILAAAIE-NYISIL--DVETQVCR  717 (725)
Q Consensus       697 Lla~s~D-g~V~Iw--Dl~tg~~v  717 (725)
                      |++++.+ +.|.+|  |.++|+..
T Consensus       300 l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEEcCCCcEEEEEEeCCCCeEE
Confidence            9888875 899999  55666433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=2.4e-14  Score=152.34  Aligned_cols=178  Identities=13%  Similarity=0.154  Sum_probs=126.9

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-C--eEEEEecc---------CCCCeEEEEEcCCCCEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES-F--TVKSTLEE---------HTQWITDVRFSPSLSRL  612 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~-~--~~i~~l~~---------H~~~V~~IafsPd~~~L  612 (725)
                      +.+..+..+...+.+++|+|||++|++++ .++.|.+|++.. +  ..+..+..         +...+.+++|+|+++++
T Consensus        76 ~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           76 HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence            44455556777899999999999888887 679999999963 2  23333321         12348899999999966


Q ss_pred             EEEeCCCeEEEEECC-CCCe-eeEEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC--CeeE--EEEec-C--
Q 004885          613 ATSSADRTVRVWDTE-NPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCA--GVFKC-Q--  682 (725)
Q Consensus       613 asgs~DgtIrvWDl~-~~~~-~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t--~~~v--~~~~~-~--  682 (725)
                      ++...++.|++||+. ++.. .+..+..+ ...+..++|+|+|+++++++..++.|++|+++.  ++..  ..+.. .  
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence            666668899999998 3331 11222222 336788999999998887788889999999874  5432  23322 1  


Q ss_pred             ----CCeEEEEEecCCCEEEEE-EcCCeEEEEECC---CCeEEEEEeCC
Q 004885          683 ----SGATQMRFQPRLGRILAA-AIENYISILDVE---TQVCRLKLQVS  723 (725)
Q Consensus       683 ----~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~---tg~~v~~l~GH  723 (725)
                          ..+..++|+|+|++|+++ ..++.|.+||+.   +.+.+..+..|
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~  284 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE  284 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence                348889999999988655 458999999997   33666666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.64  E-value=3e-15  Score=176.09  Aligned_cols=206  Identities=8%  Similarity=0.030  Sum_probs=151.8

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i  561 (725)
                      +..+.|+||+.               +|+.++. +.|.+|....+...                 ....+..|...+.++
T Consensus       111 v~~~~~SpDg~---------------~l~~~~~-~~i~~~d~~~~~~~-----------------~~~~l~~~~~~~~~~  157 (741)
T 2ecf_A          111 IVDYQWSPDAQ---------------RLLFPLG-GELYLYDLKQEGKA-----------------AVRQLTHGEGFATDA  157 (741)
T ss_dssp             SCCCEECTTSS---------------EEEEEET-TEEEEEESSSCSTT-----------------SCCBCCCSSSCEEEE
T ss_pred             cceeEECCCCC---------------EEEEEeC-CcEEEEECCCCCcc-----------------eEEEcccCCcccccc
Confidence            45678888876               6666665 88999955332100                 112344567789999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC----------------eEEEEEcCCCCEEEEEeCCC------
Q 004885          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------------ITDVRFSPSLSRLATSSADR------  619 (725)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~----------------V~~IafsPd~~~Lasgs~Dg------  619 (725)
                      +|||||++|++++ ++.|++||+.+++.......+...                +.+++|+||+++|++++.|+      
T Consensus       158 ~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~  236 (741)
T 2ecf_A          158 KLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ  236 (741)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred             cCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence            9999999999987 569999999988776655544432                47899999999999987765      


Q ss_pred             ---------------------------eEEEEECCC-CCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEe----CCCcE
Q 004885          620 ---------------------------TVRVWDTEN-PDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD----NNSEI  665 (725)
Q Consensus       620 ---------------------------tIrvWDl~~-~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs----~Dg~I  665 (725)
                                                 .|++||+.+ +. ......  .|...+.+++| |+|+.+++++.    .+..|
T Consensus       237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred             ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence                                       889999988 76 333332  47778999999 99997776654    35679


Q ss_pred             EEEECCCCeeEEEEecCC-----CeEEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCC
Q 004885          666 RYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQVSH  724 (725)
Q Consensus       666 ~IwDl~t~~~v~~~~~~~-----~V~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH~  724 (725)
                      ++||+.++++...+....     .+..++|+|||+.+++++.|+.++||.+. +++ +..+.+|.
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~  378 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN  378 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence            999999998887776532     45689999999977777778877777665 344 66666553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.64  E-value=2.8e-14  Score=150.40  Aligned_cols=194  Identities=11%  Similarity=0.068  Sum_probs=144.2

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAV  580 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~La-Sgs~Dg~V~  580 (725)
                      .....++++++.++.|.+|+....                   +.+..+..+. ..+.+++|+|++++++ ++..++.|.
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~   68 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   68 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence            344568899999999999944222                   2333333332 2578999999998665 555789999


Q ss_pred             EEECCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCCe--eeEEEecCC
Q 004885          581 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS  640 (725)
Q Consensus       581 IWdl~~~~~i~~l~~H~------~~V~~IafsPd~~~Lasgs~D------------gtIrvWDl~~~~~--~l~~~~~h~  640 (725)
                      +||+.+++.+..+..+.      ..+.+++|+|++++|++++.+            +.|.+||+.++..  .+..+.. .
T Consensus        69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~  147 (349)
T 1jmx_B           69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-P  147 (349)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-C
T ss_pred             EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-C
Confidence            99999998887765332      237899999999999998865            8999999987431  2334443 3


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-------------------------------------
Q 004885          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------------------  683 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~-------------------------------------  683 (725)
                      ..+.+++|+|+++ +++ ++  +.|++||+.+++.+..+....                                     
T Consensus       148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            4688999999998 665 33  449999999988776664321                                     


Q ss_pred             --------------------------------CeEEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          684 --------------------------------GATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       684 --------------------------------~V~sv~fsp-dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                                                      .+..++|+| ++++++++  ++.|.+||+++++.+..+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~  293 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL  293 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC
Confidence                                            345677789 99988877  88999999999999888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.61  E-value=3.2e-14  Score=166.58  Aligned_cols=162  Identities=15%  Similarity=0.200  Sum_probs=127.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-eEEEEecc-CCC---CeEEEEEcC--CCCEEEEEeCCCe
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESF-TVKSTLEE-HTQ---WITDVRFSP--SLSRLATSSADRT  620 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~-~~i~~l~~-H~~---~V~~IafsP--d~~~Lasgs~Dgt  620 (725)
                      .|...|.+++|+|||++|++++.|+     .|++||+.++ .....+.. +..   .+.+++|+|  ++++|++++.|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            5677899999999999999988776     9999999998 43333322 222   346789999  9999999999999


Q ss_pred             EEEEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          621 VRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg----~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      ++||+++.....+..+..+...+.+ ++|+|+++.+++++..++    .|+.||+.++. +..+.+...+.+++|+|+|+
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGS  413 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSS
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCC
Confidence            9999887333367778888777877 799999998887877765    67778887765 44455567799999999999


Q ss_pred             EEEEEEcC----CeEEEEECCCCe
Q 004885          696 RILAAAIE----NYISILDVETQV  715 (725)
Q Consensus       696 ~Lla~s~D----g~V~IwDl~tg~  715 (725)
                      +|++++.+    +.|++||+.+++
T Consensus       414 ~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          414 AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEEecCCCCCcEEEEEECCCCe
Confidence            98877554    569999999887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.61  E-value=1.6e-13  Score=146.86  Aligned_cols=165  Identities=14%  Similarity=0.129  Sum_probs=120.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe-------E------EEEeccCCCCeEEEEEcCCCCEEEEEe-CC
Q 004885          554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT-------V------KSTLEEHTQWITDVRFSPSLSRLATSS-AD  618 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~-------~------i~~l~~H~~~V~~IafsPd~~~Lasgs-~D  618 (725)
                      +...+.+++|+|||++|++++ .++.|++|+++...       .      ......+...+..++|+|++++|++++ .+
T Consensus       153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            344578999999999776655 48899999987533       1      122233456688999999999888777 68


Q ss_pred             CeEEEEECCCCCe-eeEEEe---cCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECC--CCe--eEEEEecCCCeEEEE
Q 004885          619 RTVRVWDTENPDY-SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN--NGS--CAGVFKCQSGATQMR  689 (725)
Q Consensus       619 gtIrvWDl~~~~~-~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~--t~~--~v~~~~~~~~V~sv~  689 (725)
                      +.|.+||+.++.. .+..+.   .+...+.+++|+|+|++++++... ++.|.+|++.  +++  .+..+.....+..++
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~  312 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFI  312 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence            9999999986541 122222   233457899999999977777766 6899999996  454  344444445788999


Q ss_pred             EecCCCEEEEEE-cCCeEEEE--ECCCCeEEE
Q 004885          690 FQPRLGRILAAA-IENYISIL--DVETQVCRL  718 (725)
Q Consensus       690 fspdg~~Lla~s-~Dg~V~Iw--Dl~tg~~v~  718 (725)
                      |+|+|++|++++ .++.|.||  |.+++++..
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            999999998888 46899995  556776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.60  E-value=1.4e-14  Score=169.53  Aligned_cols=205  Identities=13%  Similarity=0.081  Sum_probs=147.8

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      ..+..+.|+|+ .              .++++  .|+.|.+|+...+                    ....+..+...+.
T Consensus        82 ~~v~~~~~spd-~--------------~~~~~--~~~~i~~~d~~~~--------------------~~~~l~~~~~~~~  124 (706)
T 2z3z_A           82 FPSFRTLDAGR-G--------------LVVLF--TQGGLVGFDMLAR--------------------KVTYLFDTNEETA  124 (706)
T ss_dssp             CCCEEEEETTT-T--------------EEEEE--ETTEEEEEETTTT--------------------EEEEEECCTTCCT
T ss_pred             cCceeEEECCC-C--------------eEEEE--ECCEEEEEECCCC--------------------ceEEccCCccccc
Confidence            35677888886 3              23443  4589999954222                    1223445677799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCC--------------eEEEEEcCCCCEEEEEe----
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSRLATSS----  616 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~-----~~~i~~l~~H~~~--------------V~~IafsPd~~~Lasgs----  616 (725)
                      +++|||||++|+++ .|+.|++||+.+     ++.......+...              +.+++|+||+++|++++    
T Consensus       125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~  203 (706)
T 2z3z_A          125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS  203 (706)
T ss_dssp             TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT
T ss_pred             CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC
Confidence            99999999999985 689999999988     7766544443333              48999999999999987    


Q ss_pred             -----------------------------CCCeEEEEECCCCCeeeEEE--ecCCCCeEEEEEccCCCeEEEEEeCCC--
Q 004885          617 -----------------------------ADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNS--  663 (725)
Q Consensus       617 -----------------------------~DgtIrvWDl~~~~~~l~~~--~~h~~~V~sl~fsP~g~~llaSgs~Dg--  663 (725)
                                                   .+..|++||+.++. .....  ..|...+.+++|+|+|+.++++ +.++  
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~  281 (706)
T 2z3z_A          204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVA-EVNRAQ  281 (706)
T ss_dssp             TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEE-EECTTS
T ss_pred             CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEE-EeCCCC
Confidence                                         44689999998876 33322  2466779999999999965544 4344  


Q ss_pred             ---cEEEEECCCC-eeEEEEec--CC---CeEEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCC
Q 004885          664 ---EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQVSH  724 (725)
Q Consensus       664 ---~I~IwDl~t~-~~v~~~~~--~~---~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH~  724 (725)
                         .|++||+.++ .+...+..  ..   .+.+++|+|  +|++++++..|+.++||++. ++..+..+.+|.
T Consensus       282 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          282 NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence               8999999998 44333322  22   246789999  98888878788999999886 677777776653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.58  E-value=4.3e-14  Score=173.87  Aligned_cols=164  Identities=13%  Similarity=0.095  Sum_probs=137.8

Q ss_pred             CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCC
Q 004885          554 STSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVR-VWDTENPD  630 (725)
Q Consensus       554 H~~~V~~i~fS-pdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsPd~~~Lasgs~DgtIr-vWDl~~~~  630 (725)
                      |...|.+++|+ |||++|++++ ++.|++|++.++... .+..|.. .+.+++|+ +++.|++++.+..|. +||+..+.
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            56679999999 9999999887 789999999887654 4667777 89999999 999999999888888 99998765


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCC-----
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN-----  704 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg-----  704 (725)
                        ...+.+|...+.+++|+|+|+ .|++++.++.|++||+.++++...+. +...+.+++|+|||++|++++.++     
T Consensus       371 --~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          371 --AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             --EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             --ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence              344457888999999999998 55577889999999999999888774 466789999999999998887654     


Q ss_pred             -----eEEEEECCCCeEEEEEeCCC
Q 004885          705 -----YISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       705 -----~V~IwDl~tg~~v~~l~GH~  724 (725)
                           .|++||+.+++ +..+.+|.
T Consensus       448 ~~~~~~i~l~d~~~g~-~~~l~~~~  471 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK-IFAATTEN  471 (1045)
T ss_dssp             SCCEEEEEEEETTTTE-EEECSCSS
T ss_pred             CCCCCeEEEEECCCCc-EEEeeCCC
Confidence                 89999999988 66666553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=6.9e-13  Score=142.00  Aligned_cols=199  Identities=10%  Similarity=0.042  Sum_probs=136.0

Q ss_pred             CcEEEEeeCC----CcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEE
Q 004885          506 DRFVDDGSLD----DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAV  580 (725)
Q Consensus       506 ~~~lasGs~D----~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~  580 (725)
                      .++|++++.+    +.|.+|.....               ...+..+..+..+......+++  ++++|++++ .++.|.
T Consensus        61 g~~l~~~~~~~~~~~~v~~~~~~~~---------------~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           61 GKFVYSVNEFSKDQAAVSAFAFDKE---------------KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             SSEEEEEECCSSTTCEEEEEEEETT---------------TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred             CCEEEEEEccCCCCCcEEEEEEeCC---------------CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence            4477777765    78888844221               1223445555556667788888  888777776 578999


Q ss_pred             EEECCCCeEEEE------ecc--------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe------e------e
Q 004885          581 LWCTESFTVKST------LEE--------HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY------S------L  633 (725)
Q Consensus       581 IWdl~~~~~i~~------l~~--------H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~------~------l  633 (725)
                      +|++.....+..      ..+        +...+.+++|+|++++|++++ .++.|++|++.....      .      .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            999975332211      111        123458899999999776665 488999999876542      1      1


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE--EEEec----CCCeEEEEEecCCCEEEEEEcC--Ce
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC----QSGATQMRFQPRLGRILAAAIE--NY  705 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v--~~~~~----~~~V~sv~fspdg~~Lla~s~D--g~  705 (725)
                      .....+...+..++|+|+|+.+++++..++.|++||+.++...  ..+..    ...+..++|+|||++|+++..+  +.
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            2223345568899999999977777667899999999977653  22322    2347899999999998777665  89


Q ss_pred             EEEEECC--CCe--EEEEEe
Q 004885          706 ISILDVE--TQV--CRLKLQ  721 (725)
Q Consensus       706 V~IwDl~--tg~--~v~~l~  721 (725)
                      |.||++.  +++  .+..+.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~  303 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQL  303 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEEcCCCCcEEEeeEec
Confidence            9999995  454  454443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.57  E-value=2.7e-14  Score=167.27  Aligned_cols=200  Identities=10%  Similarity=0.041  Sum_probs=141.6

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCC---------CcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD---------DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D---------~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      +..+.|+|||.               +|+.++.+         +.|.+|....+.                 ...+....
T Consensus        63 v~~~~~SpDg~---------------~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------------~~~l~~~~  110 (723)
T 1xfd_A           63 AIRYEISPDRE---------------YALFSYNVEPIYQHSYTGYYVLSKIPHGD-----------------PQSLDPPE  110 (723)
T ss_dssp             CSEEEECTTSS---------------EEEEEESCCCCSSSCCCSEEEEEESSSCC-----------------CEECCCTT
T ss_pred             cceEEECCCCC---------------EEEEEecCccceeecceeeEEEEECCCCc-----------------eEeccCCc
Confidence            67788888876               66666554         567788543321                 11222233


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe------------------EEEEEcCCCCEEEE
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI------------------TDVRFSPSLSRLAT  614 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V------------------~~IafsPd~~~Las  614 (725)
                      +|...|.+++|||||++||+++. +.|++||+.+++.......+...+                  .+++|+||+++|++
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~  189 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY  189 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence            56666899999999999999885 799999999887776665544333                  78999999999998


Q ss_pred             EeCCC----------------------------------eEEEEECCCCCeeeEEEecC------CCCeEEEEEccCCCe
Q 004885          615 SSADR----------------------------------TVRVWDTENPDYSLRTFTGH------STTVMSLDFHPSKED  654 (725)
Q Consensus       615 gs~Dg----------------------------------tIrvWDl~~~~~~l~~~~~h------~~~V~sl~fsP~g~~  654 (725)
                      ++.|+                                  .|++||+.++. +...+..+      ...+.+++|+|+|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            87553                                  79999998876 34555543      567899999999984


Q ss_pred             EEEEEeC---CCcEEEEECCCCeeEEEEec--CCCe----EEEEEecCCCEEEEE--EcCC------eEEEEE-CCCCe
Q 004885          655 LLCSCDN---NSEIRYWSINNGSCAGVFKC--QSGA----TQMRFQPRLGRILAA--AIEN------YISILD-VETQV  715 (725)
Q Consensus       655 llaSgs~---Dg~I~IwDl~t~~~v~~~~~--~~~V----~sv~fspdg~~Lla~--s~Dg------~V~IwD-l~tg~  715 (725)
                      +++....   +..|++||+.++++...+..  ...+    ..++|+|||+.|+.+  ..++      .|.+|| ..+++
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            4433332   35799999999988776643  2333    388999999977764  3466      577788 34443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.56  E-value=6.2e-14  Score=172.51  Aligned_cols=195  Identities=8%  Similarity=-0.020  Sum_probs=153.6

Q ss_pred             CeeEEEEe-cCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC-Ce
Q 004885          481 SKSLLMFG-SDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KV  558 (725)
Q Consensus       481 ~~s~l~fs-~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~-~V  558 (725)
                      .+..+.|+ |++.               .++.++ ++.|.+|....+                    ....+..|.. .+
T Consensus       297 ~v~~~~~S~pdG~---------------~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~  340 (1045)
T 1k32_A          297 SKFAEDFSPLDGD---------------LIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRY  340 (1045)
T ss_dssp             GGGEEEEEECGGG---------------CEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEE
T ss_pred             ccceeeecCCCCC---------------EEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceE
Confidence            46678888 8775               555555 778888843211                    1223556777 79


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEE-EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          559 ESCHFSPDGKLLATGGHDKKAV-LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~-IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      .+++|+ ||+.|++++.+..|. +||+.+++.. .+.+|...+.+++|+|++++|++++.++.|++||+.++. ....+.
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~  417 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIER  417 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEecc
Confidence            999999 999999999888888 9999877654 444788899999999999999999999999999999887 566666


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCC---------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~D---------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      +|...|.+++|+|+|+++++++..+         +.|++||+.+++......+...+..++|+|||.+|++++.++.+.+
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~  497 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS  497 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcC
Confidence            8989999999999999665554422         4899999998874333334566889999999999999999888888


Q ss_pred             EECCCC
Q 004885          709 LDVETQ  714 (725)
Q Consensus       709 wDl~tg  714 (725)
                      |+....
T Consensus       498 ~~~~~~  503 (1045)
T 1k32_A          498 PDRVVL  503 (1045)
T ss_dssp             ECSSSS
T ss_pred             cchhcc
Confidence            887644

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.55  E-value=1e-13  Score=158.94  Aligned_cols=201  Identities=9%  Similarity=0.026  Sum_probs=139.8

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeC-CCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CC
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SK  557 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~-D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~  557 (725)
                      ..+..+.|+|||.               .|+.++. |+++++|... +                   .....+..|. ..
T Consensus        22 ~~~~~~~~~~DG~---------------~la~~s~~~g~~~lw~~~-~-------------------g~~~~lt~~~~~~   66 (582)
T 3o4h_A           22 VEKYSLQGVVDGD---------------KLLVVGFSEGSVNAYLYD-G-------------------GETVKLNREPINS   66 (582)
T ss_dssp             SCEEEEEEEETTT---------------EEEEEEEETTEEEEEEEE-T-------------------TEEEECCSSCCSE
T ss_pred             cchheeecCCCCC---------------eEEEEEccCCceeEEEEc-C-------------------CCcEeeecccccc
Confidence            3578889999987               6676665 9999999531 1                   1223344454 57


Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004885          558 VESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPD  630 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~---~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~  630 (725)
                      |.+++|+|| +++++++.   +...+||.++.   +... .+..+. .+..++|+|+++. +++++.++.+.+||+.++.
T Consensus        67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            999999999 77887775   45556655432   2222 443322 3446688887753 3444444455599998876


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--  704 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D----g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--  704 (725)
                       +..... +..  .+++|+|+|+.++ +++.+    +.|++||+.++++.....+...+..++|+|||+.|+++..++  
T Consensus       144 -~~~l~~-~~~--~~~~~spDG~~la-~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  218 (582)
T 3o4h_A          144 -LRELAR-LPG--FGFVSDIRGDLIA-GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREA  218 (582)
T ss_dssp             -EEEEEE-ESS--CEEEEEEETTEEE-EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCE
T ss_pred             -EEEeec-CCC--ceEEECCCCCEEE-EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCee
Confidence             333333 333  7899999999554 44444    679999999988765444466789999999999999777788  


Q ss_pred             eEEEEECCCCeEEEEEeCCC
Q 004885          705 YISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .|++||+.++++. .+.+|.
T Consensus       219 ~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          219 RLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             EEEEECTTTCCEE-ECCCSC
T ss_pred             EEEEEcCCCCcEE-EccCCC
Confidence            8999999999888 777764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.54  E-value=1.3e-12  Score=141.03  Aligned_cols=193  Identities=9%  Similarity=0.088  Sum_probs=131.4

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE--EEEEe-----------
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL--LATGG-----------  574 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~--LaSgs-----------  574 (725)
                      ++++++.+ .|.+|.....               + ....+.....+ +.+.+++|+|||++  +++++           
T Consensus        53 ~l~~~~~~-~v~~~~~~~~---------------g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           53 NIYGAAMK-KWSSFAVKSP---------------T-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             EEEEEEBT-EEEEEEEEET---------------T-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             EEEEEccc-eEEEEEECCC---------------C-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            77777777 8999944210               1 11111111111 23667999999994  55553           


Q ss_pred             --CCCcEEEEECC-CCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCCee-eEEEe--cCCCC
Q 004885          575 --HDKKAVLWCTE-SFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE-NPDYS-LRTFT--GHSTT  642 (725)
Q Consensus       575 --~Dg~V~IWdl~-~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~-~~~~~-l~~~~--~h~~~  642 (725)
                        .++.+.+|+++ +++....+.    .+...+.+++|+|++++|++++. ++.|++||+. ++... +..+.  .|...
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence              68999999997 465544333    24567999999999999888764 6799999998 55522 22333  24567


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECC--CCeeEE---EEec---C----C-------CeEEEE-EecCCCEEEEEEc
Q 004885          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSCAG---VFKC---Q----S-------GATQMR-FQPRLGRILAAAI  702 (725)
Q Consensus       643 V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~~v~---~~~~---~----~-------~V~sv~-fspdg~~Lla~s~  702 (725)
                      +..++|+|+|+.+++++..++.|.+|+++  +++...   .+..   .    .       .+..++ |+|||++|+++..
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            99999999999776666667899999875  565432   2221   1    2       478999 9999999887765


Q ss_pred             C-C-----eEEEEECC-CCeEEE
Q 004885          703 E-N-----YISILDVE-TQVCRL  718 (725)
Q Consensus       703 D-g-----~V~IwDl~-tg~~v~  718 (725)
                      + +     .|.+|++. ++++..
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEE
T ss_pred             CCCCCCCCeEEEEEECCCCCEEE
Confidence            3 3     89999996 676543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.53  E-value=9.7e-15  Score=171.52  Aligned_cols=199  Identities=14%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEE
Q 004885          484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVES  560 (725)
Q Consensus       484 ~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~  560 (725)
                      .+.|+|++.               +++++ .|+.|++|....+                   .....+.+|..   .|.+
T Consensus        20 ~~~~s~dg~---------------~~~~~-~d~~i~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~   64 (719)
T 1z68_A           20 FPNWISGQE---------------YLHQS-ADNNIVLYNIETG-------------------QSYTILSNRTMKSVNASN   64 (719)
T ss_dssp             CCEESSSSE---------------EEEEC-TTSCEEEEESSSC-------------------CEEEEECHHHHHTTTCSE
T ss_pred             ccEECCCCe---------------EEEEc-CCCCEEEEEcCCC-------------------cEEEEEccccccccceee
Confidence            457777664               66655 5899999954333                   12223333322   4899


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          561 CHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       561 i~fSpdg~~LaSgs~---------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ++|||||++|++++.         |+.|++||+.+++.+... .....+.+++|+|||++|+.+. |+.|++||+.++. 
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~-  141 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP-  141 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC-
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC-
Confidence            999999999998876         789999999988762111 1135688999999999999886 7899999998876 


Q ss_pred             eeEE-EecCCCCe-----------------EEEEEccCCCeEEEEEeCCC------------------------------
Q 004885          632 SLRT-FTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS------------------------------  663 (725)
Q Consensus       632 ~l~~-~~~h~~~V-----------------~sl~fsP~g~~llaSgs~Dg------------------------------  663 (725)
                      +... ..++...|                 .+++|+|||+.++++...++                              
T Consensus       142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~  221 (719)
T 1z68_A          142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN  221 (719)
T ss_dssp             CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred             cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence            3322 22333222                 48999999996654443221                              


Q ss_pred             ---cEEEEECCCCeeE--EEE------e-cCCCeEEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 004885          664 ---EIRYWSINNGSCA--GVF------K-CQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL  720 (725)
Q Consensus       664 ---~I~IwDl~t~~~v--~~~------~-~~~~V~sv~fspdg~~Lla~s~D----g~V~IwD----l~tg~~v~~l  720 (725)
                         .|++||+.+++++  ..+      . +...+.+++|+||+..+++....    ..|.+||    +.++++...+
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence               7889999987753  111      1 23458999999996555543332    3489999    8888766555

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.52  E-value=1.9e-13  Score=156.72  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=122.3

Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCee
Q 004885          559 ESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS  632 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~  632 (725)
                      .+++|||||++|++++.|    ..|++||+.+++.. .+..|...+..++|+||+++|+++..++  .|++||+.++. .
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-~  230 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-V  230 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-E
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-E
Confidence            789999999999988877    78999999887755 6778889999999999999999888888  89999999887 4


Q ss_pred             eEEEecCCCCeEEEE--------EccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC
Q 004885          633 LRTFTGHSTTVMSLD--------FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       633 l~~~~~h~~~V~sl~--------fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      . .+.+|...+..++        |+|+| .++++++.|+.+++|++  ++++..  ..+.|.+++|+ ++..+++++.+.
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCC
Confidence            4 6777777777777        99999 68889999999999999  766552  24678899999 888888877764


Q ss_pred             ---eEEEEECCC
Q 004885          705 ---YISILDVET  713 (725)
Q Consensus       705 ---~V~IwDl~t  713 (725)
                         .|.+||+.+
T Consensus       304 ~p~~l~~~d~~~  315 (582)
T 3o4h_A          304 TPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEEETTCC
T ss_pred             CCCeEEEEcCCC
Confidence               477777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=7.6e-12  Score=134.96  Aligned_cols=161  Identities=12%  Similarity=0.097  Sum_probs=118.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCeEE--EEec--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004885          554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTE-SFTVK--STLE--EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~-~~~~i--~~l~--~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl  626 (725)
                      +...+.+++|+|||++|++++. ++.|++||++ +++..  ..+.  .|...+..++|+|++++|++++. +++|.+|++
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            5567999999999998887764 6799999998 66543  2333  24567999999999999988775 789999987


Q ss_pred             C--CCCee--eEEEe-------cCCC------CeEEEE-EccCCCeEEEEEeCCC-----cEEEEECC-CCeeEEE---E
Q 004885          627 E--NPDYS--LRTFT-------GHST------TVMSLD-FHPSKEDLLCSCDNNS-----EIRYWSIN-NGSCAGV---F  679 (725)
Q Consensus       627 ~--~~~~~--l~~~~-------~h~~------~V~sl~-fsP~g~~llaSgs~Dg-----~I~IwDl~-t~~~v~~---~  679 (725)
                      +  ++...  ...+.       +|..      .+..++ |+|+|+.++++...+.     .|.+|++. +++....   +
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~  302 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence            6  34321  11222       1222      488999 9999997766554333     89999996 5665432   3


Q ss_pred             ec-CCCeEEEEEec---CCCEEEEEEcC-CeEEEEECCCC
Q 004885          680 KC-QSGATQMRFQP---RLGRILAAAIE-NYISILDVETQ  714 (725)
Q Consensus       680 ~~-~~~V~sv~fsp---dg~~Lla~s~D-g~V~IwDl~tg  714 (725)
                      .. ...+..++|+|   +|++|++++.+ +.|.||++...
T Consensus       303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32 44578899999   89999988774 89999998766

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.49  E-value=3.5e-13  Score=159.63  Aligned_cols=195  Identities=15%  Similarity=0.093  Sum_probs=137.5

Q ss_pred             eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-----
Q 004885          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----  557 (725)
Q Consensus       483 s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-----  557 (725)
                      ..+.|++++.               +++++  |+.|++|....+                   .....+.+|...     
T Consensus        20 ~~~~w~~dg~---------------~~~~~--~~~i~~~~~~~~-------------------~~~~~~~~~~~~~~~~~   63 (740)
T 4a5s_A           20 YSLRWISDHE---------------YLYKQ--ENNILVFNAEYG-------------------NSSVFLENSTFDEFGHS   63 (740)
T ss_dssp             CCEEECSSSE---------------EEEEE--TTEEEEEETTTC-------------------CEEEEECTTTTTTCCSC
T ss_pred             cccEECCCCc---------------EEEEc--CCcEEEEECCCC-------------------ceEEEEechhhhhhccc
Confidence            4578888775               77776  899999955433                   122334444432     


Q ss_pred             eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          558 VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      ...+.|||||++|+.++.+         +.+.+||+.+++.. .+..|...+..++|+|||+.|+.+. |+.|++||+.+
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~  141 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN  141 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence            3458999999999998876         55679999998765 4667788899999999999998885 78999999988


Q ss_pred             CCeeeEEEecCCCCe-----------------EEEEEccCCCeEEEEEeCCC----------------------------
Q 004885          629 PDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS----------------------------  663 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V-----------------~sl~fsP~g~~llaSgs~Dg----------------------------  663 (725)
                      +.....+..++...+                 ..+.|+|||+.|++...+++                            
T Consensus       142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence            762222223333322                 35899999996665433222                            


Q ss_pred             -------cEEEEECCC---Ce---eEEEEe------cCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 004885          664 -------EIRYWSINN---GS---CAGVFK------CQSGATQMRFQPRLGRILAAAI----ENYISILDVETQV  715 (725)
Q Consensus       664 -------~I~IwDl~t---~~---~v~~~~------~~~~V~sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~  715 (725)
                             .|++||+.+   +.   +.....      +...+..++|+|||+.++....    +..|++||+.+++
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                   588899988   73   332221      2344889999999886665543    2479999999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.46  E-value=3.1e-12  Score=137.51  Aligned_cols=171  Identities=9%  Similarity=0.068  Sum_probs=124.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEE------------
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS------------  615 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~Ia--fsPd~~~Lasg------------  615 (725)
                      ...+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..            
T Consensus        75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence            3345555666788999999999999999999999999888777776666665444  48899988743            


Q ss_pred             ----------eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeC-----CCcEEEEECCCCeeEEEE
Q 004885          616 ----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVF  679 (725)
Q Consensus       616 ----------s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~-----Dg~I~IwDl~t~~~v~~~  679 (725)
                                ..+..|.+||+.++.  ...+..+...+..++|+| +|..++++...     ...|.++|+..+......
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  232 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK  232 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred             cchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence                      234689999999876  455556667899999999 98866544432     337888888766544333


Q ss_pred             ecC--CCeEEEEEecCCCEEEEEEc-CC----eEEEEECCCCe--EEEEEeC
Q 004885          680 KCQ--SGATQMRFQPRLGRILAAAI-EN----YISILDVETQV--CRLKLQV  722 (725)
Q Consensus       680 ~~~--~~V~sv~fspdg~~Lla~s~-Dg----~V~IwDl~tg~--~v~~l~G  722 (725)
                      ...  ..+..++|+|||+.|+..+. ++    .|++||+.+++  .+..+.+
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~  284 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA  284 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC
Confidence            333  24778899999998766554 22    39999999986  4444444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=1.8e-11  Score=130.29  Aligned_cols=166  Identities=11%  Similarity=0.059  Sum_probs=126.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCe
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL---------EEHTQWITDVRFSP-SLSRLATSS-ADRT  620 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l---------~~H~~~V~~IafsP-d~~~Lasgs-~Dgt  620 (725)
                      ++-.....++|+++|+++++...++.|++||.+... .+..+         .++......|+|+| ++.++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            445678999999999988888889999999986542 45555         34555789999999 788777776 6899


Q ss_pred             EEEEECCCCCeeeEEEecCC----------CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEE
Q 004885          621 VRVWDTENPDYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ  687 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h~----------~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~s  687 (725)
                      |++||.. +. .+..+....          .....|+|+|++..++++...++.|++||..+++.+..+..   ...+..
T Consensus       168 I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          168 IVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             EEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            9999943 44 455553222          34899999999666888888899999999999999988853   456889


Q ss_pred             EEEecCCCEEEEEE-------cCCeEEEEECCCCeEEEEEe
Q 004885          688 MRFQPRLGRILAAA-------IENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       688 v~fspdg~~Lla~s-------~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++|+| +..+++.+       .+..|++||+.+++++..+.
T Consensus       246 ~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          246 ISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             EEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             eeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            99999 32222222       23589999999999998884

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.44  E-value=1.9e-11  Score=132.42  Aligned_cols=163  Identities=9%  Similarity=0.021  Sum_probs=113.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC---
Q 004885          556 SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN---  628 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~-~~Lasgs~DgtIrvWDl~~---  628 (725)
                      .....++|+|||++|+++..  +++|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++..   
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            45778999999999998874  57999999999988877 432 1 12223444533 3445555555555555432   


Q ss_pred             ---------------------------------------------CCeee-EEEec------CC----CCeEEEEEccCC
Q 004885          629 ---------------------------------------------PDYSL-RTFTG------HS----TTVMSLDFHPSK  652 (725)
Q Consensus       629 ---------------------------------------------~~~~l-~~~~~------h~----~~V~sl~fsP~g  652 (725)
                                                                   ....+ ..+.-      +.    .....++|+|++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg  265 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS  265 (361)
T ss_dssp             EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred             EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence                                                         11000 00000      00    001126889998


Q ss_pred             CeEEEEEe----------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEE
Q 004885          653 EDLLCSCD----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKL  720 (725)
Q Consensus       653 ~~llaSgs----------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg--~~v~~l  720 (725)
                      +.+++++.          .+..|.+||+.+++.+..+..+. +.+|+|+|+|++|++++. +.|.|||+.++  +++.++
T Consensus       266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            88887665          13479999999999999998877 999999999998888776 99999999999  999997


Q ss_pred             eC
Q 004885          721 QV  722 (725)
Q Consensus       721 ~G  722 (725)
                      .+
T Consensus       344 ~~  345 (361)
T 2oiz_A          344 EG  345 (361)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=158.79  Aligned_cols=158  Identities=13%  Similarity=0.054  Sum_probs=113.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCe-----------------EEEEEcCCCCEEEEEeC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWI-----------------TDVRFSPSLSRLATSSA  617 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-~~H~~~V-----------------~~IafsPd~~~Lasgs~  617 (725)
                      ..|.+++|||||++||++. |+.|++||+.+++..... .++...|                 .+++|+||+++|++++.
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            4588999999999999986 789999999887765432 2333222                 48999999999999876


Q ss_pred             CC----------------------------------eEEEEECCCCCee--e-----EEEecCCCCeEEEEEccCCCeEE
Q 004885          618 DR----------------------------------TVRVWDTENPDYS--L-----RTFTGHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       618 Dg----------------------------------tIrvWDl~~~~~~--l-----~~~~~h~~~V~sl~fsP~g~~ll  656 (725)
                      |.                                  .|++||+.++...  +     ..+.+|...+.+++|+|++. ++
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~  267 (719)
T 1z68_A          189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VC  267 (719)
T ss_dssp             ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EE
T ss_pred             CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EE
Confidence            52                                  7889999876521  1     12345778899999999965 66


Q ss_pred             EEEeCC----CcEEEEE----CCCCeeEEEEe----c-CCCeE-----EEEEecCCCEEEEE-E-cCC--eEEEEECCCC
Q 004885          657 CSCDNN----SEIRYWS----INNGSCAGVFK----C-QSGAT-----QMRFQPRLGRILAA-A-IEN--YISILDVETQ  714 (725)
Q Consensus       657 aSgs~D----g~I~IwD----l~t~~~v~~~~----~-~~~V~-----sv~fspdg~~Lla~-s-~Dg--~V~IwDl~tg  714 (725)
                      ++....    ..|++||    +.++++...+.    . ...+.     .++|+|||..|+.. + .++  .|.+||+.++
T Consensus       268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred             EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence            554322    2488999    88877765552    2 34455     78999999976553 2 344  6888888776


Q ss_pred             e
Q 004885          715 V  715 (725)
Q Consensus       715 ~  715 (725)
                      +
T Consensus       348 ~  348 (719)
T 1z68_A          348 N  348 (719)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.43  E-value=5.4e-11  Score=122.89  Aligned_cols=194  Identities=9%  Similarity=0.070  Sum_probs=138.7

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEE---EecCCCCCeEEEEE-cCCCCEEEEEeC-CCcEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ---LIPASTSKVESCHF-SPDGKLLATGGH-DKKAVL  581 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~H~~~V~~i~f-Spdg~~LaSgs~-Dg~V~I  581 (725)
                      +++++...++.|.+|... +                .....+.   ...+|...+.++++ .++++++++... ++.|++
T Consensus        42 ~l~v~~~~~~~i~~~d~~-g----------------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           42 DIIVADTNNHRIQIFDKE-G----------------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             CEEEEEGGGTEEEEECTT-S----------------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CEEEEECCCCEEEEECCC-C----------------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            377777788899999432 1                0000000   01234567899999 467776666543 889999


Q ss_pred             EECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEE
Q 004885          582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       582 Wdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaS  658 (725)
                      || .+++.+..+. .+...+.+|+++|+++++++...++.|.+||... . .+..+.  .+...+.+|++++++. ++++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v~  180 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQE-IFIS  180 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSE-EEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCC-EEEE
Confidence            99 5566666664 3446789999999999888877889999999753 3 344443  3445789999999987 7777


Q ss_pred             EeCCCcEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCC
Q 004885          659 CDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQVS  723 (725)
Q Consensus       659 gs~Dg~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg-~V~IwDl~tg~~v~~l~GH  723 (725)
                      ...++.|++||.. +..+..+...   ..+..|+++++|..+++...++ .|.+||. +++.+..+..|
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            7778999999985 5666666543   4689999999987777766675 9999995 57777777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=3.7e-12  Score=147.91  Aligned_cols=167  Identities=9%  Similarity=0.057  Sum_probs=126.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEec-cCCCCeEEEEEcCCCCEEEEEe
Q 004885          554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS  616 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~D----------g~V~IWdl~~------~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs  616 (725)
                      |...+.+++|+|||+.|++++.|          ..|++||+.+      ++. ..+. .+...+..++|+||+++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence            56678999999999999998877          5899999987      544 4555 5667888999999999998877


Q ss_pred             CC--------CeEEEEECC-CCC--eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCC
Q 004885          617 AD--------RTVRVWDTE-NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS  683 (725)
Q Consensus       617 ~D--------gtIrvWDl~-~~~--~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~~~  683 (725)
                      .+        ..|++||+. ++.  .......+|...+..++|+|+|+ ++++++.++  .|++||+.++++........
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            54        379999998 451  23444455678899999999999 778888888  67777776776654443321


Q ss_pred             C---------eEEEEEecCCCEEEEEEcCCeEEEE--ECCCCeEEEEEeCCC
Q 004885          684 G---------ATQMRFQPRLGRILAAAIENYISIL--DVETQVCRLKLQVSH  724 (725)
Q Consensus       684 ~---------V~sv~fspdg~~Lla~s~Dg~V~Iw--Dl~tg~~v~~l~GH~  724 (725)
                      .         +..++|+|++..++++.. +.++||  |+.+++ +..+.+|.
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~  335 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPW  335 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSC
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCC
Confidence            1         567899999888888887 888888  666665 56666653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.42  E-value=9.2e-11  Score=123.75  Aligned_cols=193  Identities=8%  Similarity=0.050  Sum_probs=134.5

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWC  583 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~D----g~V~IWd  583 (725)
                      +++++..++.|.+|....+                 .+.  .....+...|.+++|++++++++++..+    +.|.+||
T Consensus        58 l~~~~~~~~~i~~~d~~~~-----------------~~~--~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           58 LFLLDVFEGNIFKINPETK-----------------EIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEEEETTTCEEEEECTTTC-----------------CEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCC-----------------cEE--EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            7777778888988843221                 111  1122455779999999999988887766    6899999


Q ss_pred             CCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeE
Q 004885          584 TESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (725)
Q Consensus       584 l~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~l  655 (725)
                      .+++.....+.  .+...+.+++++|+++++++...      .+.|..||..++.  +..+..+...+..++|+|+++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEE
Confidence            98776553443  34567999999999988777654      2456666665444  33333333568899999999877


Q ss_pred             EEEEeCCCcEEEEECCC-CeeEEEE------ec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          656 LCSCDNNSEIRYWSINN-GSCAGVF------KC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t-~~~v~~~------~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +++...++.|++||+++ +..+..+      ..  ...+..++++++|..+++...++.|.+||. +++.+..+..
T Consensus       197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence            77777788999999964 3332211      11  235788999999887777777899999998 5677776653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=5.8e-11  Score=122.66  Aligned_cols=155  Identities=10%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      +...+.+++++++++++++...++.|++||.. ++.+..+.  .+...+.+|+++++++++++...++.|++||... . 
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-  195 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-  195 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-
Confidence            44568999999999988888888999999964 55555553  4556789999999998777777899999999854 3 


Q ss_pred             eeEEEecC--CCCeEEEEEccCCCeEEEEEeCCC-cEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEEcCCe
Q 004885          632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       632 ~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~Dg-~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      .+..+..+  ...+..|+++++|. ++++...++ .|++||.. ++.+..+...   ..+.+++|+|+|..+ +++.|+.
T Consensus       196 ~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~-vs~~~~~  272 (286)
T 1q7f_A          196 YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVV-LASKDYR  272 (286)
T ss_dssp             EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTE
T ss_pred             EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEE-EECCCCe
Confidence            45555433  35789999999986 776776665 99999964 6667666542   237899999997644 4477999


Q ss_pred             EEEEECCCC
Q 004885          706 ISILDVETQ  714 (725)
Q Consensus       706 V~IwDl~tg  714 (725)
                      |+||++...
T Consensus       273 v~v~~~~~~  281 (286)
T 1q7f_A          273 LYIYRYVQL  281 (286)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEEcccc
Confidence            999998654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=2.8e-11  Score=126.45  Aligned_cols=191  Identities=13%  Similarity=0.058  Sum_probs=151.1

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ++++++++.|+.|.+|+..++                   +.+..+..+. ..+.++.++|+|++|+  +.++.|.+||.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~   63 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR   63 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred             CcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence            468999999999999943222                   4445555554 4789999999999888  45788999998


Q ss_pred             CCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec------CCCCeEEEEEccCCCeEE
Q 004885          585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       585 ~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~------h~~~V~sl~fsP~g~~ll  656 (725)
                       +++.+..+..+. ..+.++.+.++++++++.+. ++.|..+|. +++ .+..+..      +......+++.++|. ++
T Consensus        64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l  139 (276)
T 3no2_A           64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKGN-YL  139 (276)
T ss_dssp             -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred             -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCCC-EE
Confidence             889998887653 57889999999999999887 777877876 344 4444431      112345567889988 66


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++...++.|.+||.. |+.+..+.....+.++.+.++|..++++..++.|..||..+|+.+.++..
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             EEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            688889999999998 99999998766788889999988888888788999999999999988864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.39  E-value=5.5e-12  Score=146.43  Aligned_cols=161  Identities=12%  Similarity=0.128  Sum_probs=116.0

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCcEEEEECC--CCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------
Q 004885          560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD----------  618 (725)
Q Consensus       560 ~i~fS--pdg~~-LaSgs~-Dg~V~IWdl~--~~~~i~~l~~-----H~~~V~~IafsPd~~~Lasgs~D----------  618 (725)
                      .+.|+  |||++ |+.++. +..|++|++.  .......+..     |...+.+++|+||+++|++++.|          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45555  99998 776654 5567777765  2033445555     67789999999999999988876          


Q ss_pred             CeEEEEECCC------CCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECC-CC---eeEEEEe
Q 004885          619 RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFK  680 (725)
Q Consensus       619 gtIrvWDl~~------~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~-t~---~~v~~~~  680 (725)
                      ..|++||+.+      +.  ...+. .+...+..++|+|||+.++++....       ..|++||+. ++   .......
T Consensus       161 ~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence            5899999987      43  45555 5567788899999999666554332       479999999 57   4444444


Q ss_pred             c-CCCeEEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeC
Q 004885          681 C-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQV  722 (725)
Q Consensus       681 ~-~~~V~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~l~G  722 (725)
                      . ...+..++|+|||+.++++..++  .|.+||+.++++...+.+
T Consensus       239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR  283 (662)
T ss_dssp             ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred             CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence            4 57799999999999666666677  677788877776554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=6.8e-11  Score=123.09  Aligned_cols=205  Identities=12%  Similarity=0.049  Sum_probs=145.4

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +......++|++++.              .++.++..++.|..|....                +     +..+..+...
T Consensus        26 ~~~~~eg~~~d~~g~--------------~l~~~~~~~~~i~~~~~~~----------------~-----~~~~~~~~~~   70 (296)
T 3e5z_A           26 GFTWTEGPVYVPARS--------------AVIFSDVRQNRTWAWSDDG----------------Q-----LSPEMHPSHH   70 (296)
T ss_dssp             CCSSEEEEEEEGGGT--------------EEEEEEGGGTEEEEEETTS----------------C-----EEEEESSCSS
T ss_pred             CCccccCCeEeCCCC--------------EEEEEeCCCCEEEEEECCC----------------C-----eEEEECCCCC
Confidence            344556778888664              3667777888888883211                1     2233456677


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEEEeC----------------
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA----------------  617 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs~----------------  617 (725)
                      +.+++|+++|+++++...++.|.+||..+++........    ...+.+++++|+++++++.+.                
T Consensus        71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~  150 (296)
T 3e5z_A           71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL  150 (296)
T ss_dssp             EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred             cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence            999999999998887777789999999777755443221    235678999999998887321                


Q ss_pred             -CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-CCee---EEEEec-CCCeEEEEEe
Q 004885          618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC---AGVFKC-QSGATQMRFQ  691 (725)
Q Consensus       618 -DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-t~~~---v~~~~~-~~~V~sv~fs  691 (725)
                       .+.|..+|.. +  .+..+..+......++|+|+++.+ ++...++.|++||+. ++..   ...+.. ...+..|+++
T Consensus       151 ~~~~l~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d  226 (296)
T 3e5z_A          151 PGRWVFRLAPD-G--TLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD  226 (296)
T ss_dssp             SSCEEEEECTT-S--CEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred             CCcEEEEECCC-C--CEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence             2355555554 3  345556666778999999999966 777778999999997 5554   334421 3457789999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          692 PRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ++|..+++.  ++.|.+||.. ++.+..+..+.
T Consensus       227 ~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~  256 (296)
T 3e5z_A          227 AGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ  256 (296)
T ss_dssp             TTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred             CCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence            998755554  8899999987 78888777653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.37  E-value=6.6e-11  Score=125.93  Aligned_cols=166  Identities=14%  Similarity=0.127  Sum_probs=129.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL  609 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~D------------------------g~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~  609 (725)
                      -+.|.+|+++++|+++++.+.+                        ++|.+||..+++.+..+. ++...+..|+++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3569999999999999888777                        479999998888876664 445678999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEE---------ecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF  679 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~---------~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~  679 (725)
                      +++++...++.|++||.......+..+         .++......|+|+|++..++++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987653234554         234457899999994344777775 689999999 567777777


Q ss_pred             ec-C----------CCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEe
Q 004885          680 KC-Q----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       680 ~~-~----------~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .. .          ..+..|+|+|+++.|+++ ..++.|++||..+|+++..+.
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            53 1          238999999995555555 457899999999999998884

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.36  E-value=2.1e-11  Score=131.03  Aligned_cols=168  Identities=11%  Similarity=0.036  Sum_probs=128.2

Q ss_pred             eEEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       547 ~~~~l~~H~~~V~~-----i~fSpdg~~LaSgs~-Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      .+..+..|...+..     .+|+|||++|+.++. ++.  |.+||+.+++......++...+..++|+|++++|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            44555566655555     899999999998887 663  8888999988877777776666678899999999999999


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEE--EccCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC  675 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~--fsP~g~~llaSg---------------------s~Dg~I~IwDl~t~~~  675 (725)
                      +.|++||+.++. ....+..+...+....  ++|++..+++..                     ..+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            999999999887 4555555555554444  489988554321                     2346799999999987


Q ss_pred             EEEEecCCCeEEEEEec-CCCEEEEEEcC------CeEEEEECCCCe
Q 004885          676 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQV  715 (725)
Q Consensus       676 v~~~~~~~~V~sv~fsp-dg~~Lla~s~D------g~V~IwDl~tg~  715 (725)
                      .........+..++|+| ||+.|+.+..+      ..|.++|+.+++
T Consensus       181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence            77666677799999999 99888877763      378888887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.36  E-value=3.9e-11  Score=126.63  Aligned_cols=164  Identities=10%  Similarity=0.079  Sum_probs=123.4

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV  623 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrv  623 (725)
                      +..+..+...+.+++|++++++++++..++.|.+||.++++....+..+...+.+++|+|+++++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            44556677778999999999988888889999999998887665554567789999999999888777666    68999


Q ss_pred             EECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       624 WDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      ||..+.. ....+.  .+...+.+++++|+|. ++++...      .+.|..||..+++..........+..++|+|++.
T Consensus       117 ~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDN-LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCS-CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCE-EEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            9998776 222222  2445789999999987 5555543      3567777776655544433345688999999998


Q ss_pred             EEEEEE-cCCeEEEEECCC
Q 004885          696 RILAAA-IENYISILDVET  713 (725)
Q Consensus       696 ~Lla~s-~Dg~V~IwDl~t  713 (725)
                      .|+++. .++.|.+||+++
T Consensus       195 ~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEecC
Confidence            776655 478999999964

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.35  E-value=6.5e-11  Score=139.40  Aligned_cols=165  Identities=7%  Similarity=-0.008  Sum_probs=121.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004885          558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~----------------V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~  617 (725)
                      +.+++|+|||+.|+.++.|+.                |++|++.++.    .+.....|...+..+.|+||+++|+.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            678999999999999988776                9999998765    22222335667889999999999887764


Q ss_pred             -----CCeEEEEECCC------CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCCe---eEEEEe
Q 004885          618 -----DRTVRVWDTEN------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGS---CAGVFK  680 (725)
Q Consensus       618 -----DgtIrvWDl~~------~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~~---~v~~~~  680 (725)
                           +..|.+||+.+      +...+..+..+...+.. .|+|+|..+++.+..++   .|.+||+.++.   ....+.
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence                 57899999986      43245666667666655 48899998777766443   69999998764   233333


Q ss_pred             cCC--CeEEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeCC
Q 004885          681 CQS--GATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQVS  723 (725)
Q Consensus       681 ~~~--~V~sv~fspdg~~Lla~s~Dg--~V~IwDl~tg~~v~~l~GH  723 (725)
                      +..  .+..++|++++..+++...|+  .|.+||+.+|+.++.+..|
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence            322  577899997655666666676  4677888788888888765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.33  E-value=4.9e-10  Score=129.00  Aligned_cols=194  Identities=10%  Similarity=0.017  Sum_probs=149.4

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-  585 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~-  585 (725)
                      .++++...++.|.+|+.                   .+.+.+..+.. ...+.++.|+|||+++++++.|+.|.+||+. 
T Consensus       168 ~~~V~~~~~~~V~viD~-------------------~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDG-------------------STYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             EEEEEETTTTEEEEEET-------------------TTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             eEEEEeCCCCeEEEEEC-------------------CCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence            46677778889999943                   22234444443 2357799999999999999999999999996 


Q ss_pred             -CCeEEEEeccCCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCCeeeEEEec----------C-CCCeEEEEE
Q 004885          586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF  648 (725)
Q Consensus       586 -~~~~i~~l~~H~~~V~~Iafs----Pd~~~Lasgs~-DgtIrvWDl~~~~~~l~~~~~----------h-~~~V~sl~f  648 (725)
                       +.+.+..+... .....++|+    |+++++++++. +++|.|+|..+.+ .+..+..          | ...+..+.+
T Consensus       228 ~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          228 KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEE
Confidence             77887777653 346799999    69999888765 5899999998877 5555432          1 126888999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCee--EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++++..++++...+|.|.++|......  +..+........+.|+|++++++++.. ++.|.++|+.+++.+..+.-
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            999888888888889999999987543  333444566889999999999888775 78999999999998877753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.29  E-value=1.2e-11  Score=132.66  Aligned_cols=159  Identities=9%  Similarity=0.013  Sum_probs=113.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEE-------------------EEEcCCCCEEEEE---
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS---  615 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~-------------------IafsPd~~~Lasg---  615 (725)
                      +.++.|+|||++|+.++.++.|++||+.+++....+..+.....+                   ++|+|+++.++.+   
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            334889999999999999999999999988776666545543333                   3567777766554   


Q ss_pred             --eCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCe
Q 004885          616 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGA  685 (725)
Q Consensus       616 --s~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V  685 (725)
                        ..+..|.+||+.++. . ..+..+...+..+.|+| ++..++++....     ..|.+||+..+........  ...+
T Consensus       163 ~~~~~~~l~~~d~~~g~-~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGE-L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HTCCCEEEEEEETTTCC-E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             cCCCcceEEEEECCCCc-E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence              356789999998876 3 33335667799999999 676555444322     4689999876654333332  1247


Q ss_pred             EEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 004885          686 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL  718 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~D-----g~V~IwDl~tg~~v~  718 (725)
                      ..++|+|+|++|++++.+     +.|++||+.+++...
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~  278 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE  278 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence            789999999988777654     449999999886543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.28  E-value=2.3e-11  Score=144.12  Aligned_cols=141  Identities=16%  Similarity=0.080  Sum_probs=110.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---------CeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV  621 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~-----V~~IafsPd~~~Lasgs~D---------gtI  621 (725)
                      ....++.|+||+++|+++  |++|++||+.++++...+.+|...     ..++.|+||+++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346789999999988886  999999999999988888877643     2448899999999998876         556


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C-CCe--------------
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGA--------------  685 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~-~~V--------------  685 (725)
                      .+||+.++.  +..+..|.+.+..++|+|||+.++ .+. |+.|++||+.++.+...... . ..+              
T Consensus        95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la-~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLA-YVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEE-EEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCc--EEEcccCCCcceeeEECCCCCEEE-EEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            799999876  345667778899999999999665 443 78999999998876543221 1 112              


Q ss_pred             ---EEEEEecCCCEEEEEEc
Q 004885          686 ---TQMRFQPRLGRILAAAI  702 (725)
Q Consensus       686 ---~sv~fspdg~~Lla~s~  702 (725)
                         ..+.|+|||++|+.++.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEE
T ss_pred             CCCcceEECCCCCEEEEEEE
Confidence               35899999999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.26  E-value=4.1e-10  Score=114.65  Aligned_cols=158  Identities=6%  Similarity=-0.054  Sum_probs=114.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..+.+++++++++++++.. ++.|.+||................+.+|+++++++++++...++.|.+||..+.. ....
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEee
Confidence            4578999999999666655 8899999987654332222233678999999999877777778899999876544 2222


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      .......+.+|++++++. ++++...++.|.+||............ ...+..|+++++|..+++...++.|.+||..+.
T Consensus       145 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            222334678899999987 777777778999999987655433222 356899999999865555556789999998765


Q ss_pred             eE
Q 004885          715 VC  716 (725)
Q Consensus       715 ~~  716 (725)
                      ..
T Consensus       224 ~~  225 (270)
T 1rwi_B          224 TS  225 (270)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.26  E-value=2.3e-10  Score=121.08  Aligned_cols=150  Identities=11%  Similarity=0.098  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC
Q 004885          558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  610 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~D---------------------------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~  610 (725)
                      |.+++|+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..++|+|++ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            8999999999988887643                           5799999998877455554 3 78899999999 


Q ss_pred             EEEEEeCCC-------eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECCCCeeE
Q 004885          611 RLATSSADR-------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCA  676 (725)
Q Consensus       611 ~Lasgs~Dg-------tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~t~~~v  676 (725)
                      +++++..+.       ...||.+++ . .+..+..+ ..+..+  +|+|+.+++.+..+       ..|.+||  +++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~-~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWED-G-KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEET-T-EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             EEEEEecccccccccccccEEEeCC-C-ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            888876542       445655553 3 24444444 555554  99999776555432       4688888  55554


Q ss_pred             EEEec-CCCeEE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          677 GVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       677 ~~~~~-~~~V~s-v~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      ..+.. ...+.. +.|+ ++ .+++++.++.++|| +.++++...+
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~  298 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA  298 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence            33333 345775 8999 87 77788889999999 8777654443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.24  E-value=3.5e-10  Score=115.22  Aligned_cols=158  Identities=9%  Similarity=-0.016  Sum_probs=117.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..+.+++++++|+++++...++.|.+|+..+.............+.+|+++++++++++...++.|.+||..... ....
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~  186 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVL  186 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEEC
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEee
Confidence            468899999999988877778899999866544433223334567899999999877777778899999998765 2222


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ...+...+.+|+++++|. ++++...++.|.+||............ ...+.+++++++|..+++...++.|++|++...
T Consensus       187 ~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          187 PFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             cccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            223336789999999985 777777788999999976544332212 256899999999887777677899999998754


Q ss_pred             e
Q 004885          715 V  715 (725)
Q Consensus       715 ~  715 (725)
                      +
T Consensus       266 ~  266 (270)
T 1rwi_B          266 H  266 (270)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.23  E-value=1e-10  Score=125.37  Aligned_cols=151  Identities=8%  Similarity=0.085  Sum_probs=107.9

Q ss_pred             EEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEECCC
Q 004885          561 CHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSAD------RTVRVWDTEN  628 (725)
Q Consensus       561 i~fSpdg~~LaSg-----s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~D------gtIrvWDl~~  628 (725)
                      +.|+|+++.++.+     ..+..|++||+.+++..... .+...+..+.|+| ++..|+.++.+      ..|.+||+..
T Consensus       147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~  225 (396)
T 3c5m_A          147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG  225 (396)
T ss_dssp             GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred             cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence            4678888877654     35678999999888765544 5677899999999 78877666543      3688888876


Q ss_pred             CCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeEEEEEec-CCCEEEEEE
Q 004885          629 PDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQP-RLGRILAAA  701 (725)
Q Consensus       629 ~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D----g~I~IwDl~t~~~v~~~~~~~~V~sv~fsp-dg~~Lla~s  701 (725)
                      ..  ...+..+  ...+..++|+|+|+.+++++..+    +.|++||+.+++........ .+. +.|+| +|..+++++
T Consensus       226 ~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          226 SN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             CC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEE
T ss_pred             Cc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEec
Confidence            54  3333333  23578899999999766554432    34999999988765444332 234 89999 999877754


Q ss_pred             ----------------cCCeEEEEECCCCeE
Q 004885          702 ----------------IENYISILDVETQVC  716 (725)
Q Consensus       702 ----------------~Dg~V~IwDl~tg~~  716 (725)
                                      .+..|++||+.+++.
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCce
Confidence                            247899999998864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=1.6e-10  Score=126.61  Aligned_cols=134  Identities=11%  Similarity=0.079  Sum_probs=108.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .+.. |+.++|  |+++|+++ .++.|++||+.+.........|...|.++.+.+.  .++++..||.|.+||+.+.. .
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~-~  158 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-T  158 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-E
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-c
Confidence            3556 999999  99999999 8899999999886666667778888998887764  38889999999999999776 2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--EEEEe----------cCCCeEEEEEecCCCEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v~~~~----------~~~~V~sv~fspdg~~Lla~  700 (725)
                      ..    +...|+|++|+|+|   ++.+..||.|++|+.+.+.+  ..++.          +...|.+|+|.+++.++++=
T Consensus       159 ~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          159 KQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            32    34689999999998   45678899999999988876  55662          34669999999987777653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.21  E-value=4.6e-10  Score=131.87  Aligned_cols=205  Identities=9%  Similarity=-0.048  Sum_probs=138.2

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEE-----EeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVD-----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~la-----sGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      .....+.|+|||.               +|+     .|+.+..|++|+...+....  .               ..+...
T Consensus       121 ~~~~~~~~SPDG~---------------~la~~~~~~G~~~~~i~v~dl~tg~~~~--~---------------~~~~~~  168 (695)
T 2bkl_A          121 VSLGTWAVSWDGK---------------KVAFAQKPNAADEAVLHVIDVDSGEWSK--V---------------DVIEGG  168 (695)
T ss_dssp             EEEEEEEECTTSS---------------EEEEEEEETTCSCCEEEEEETTTCCBCS--S---------------CCBSCC
T ss_pred             EEEEEEEECCCCC---------------EEEEEECCCCCceEEEEEEECCCCCCcC--C---------------cccCcc
Confidence            3567788999887               444     45556789999665442110  0               001111


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~-------------V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~  617 (725)
                        ....++|+|||+.|+.++.|..             |++|++.++.    .+.....|...+..+.|+||+++|+.++.
T Consensus       169 --~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  246 (695)
T 2bkl_A          169 --KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL  246 (695)
T ss_dssp             --TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred             --cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence              1267999999999999998876             9999998765    33333456678999999999999887776


Q ss_pred             CC----eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCee---EEEEec--CCCe
Q 004885          618 DR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKC--QSGA  685 (725)
Q Consensus       618 Dg----tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~~---v~~~~~--~~~V  685 (725)
                      ++    .|.+||..++.  ...+..+...+....| +++. ++++..   .++.|.+||+.++..   ...+.+  ...+
T Consensus       247 ~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          247 RGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL  322 (695)
T ss_dssp             ETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred             CCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence            65    66677655443  5556666666777777 6777 776665   357899999987753   444433  3347


Q ss_pred             EEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCC
Q 004885          686 TQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQVS  723 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~GH  723 (725)
                      ..++|+ ++..+++...|+..+||.+. +++.+..+..+
T Consensus       323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence            888888 54566666778887777554 46666666544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.21  E-value=6e-10  Score=120.64  Aligned_cols=171  Identities=13%  Similarity=0.189  Sum_probs=113.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCCCE
Q 004885          548 FQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSR  611 (725)
Q Consensus       548 ~~~l~~H~~~V~~i~fSpdg~~LaSgs~----------Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~~~  611 (725)
                      +..+..+..+  .++|+||+++|+++..          +++|.+||+.+.+.+..+...      ......++|+|++++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3445555444  8999999999998863          678999999998888777532      345678999999999


Q ss_pred             EEEEeC--CCeEEEEECCCCCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-CeeE-----------
Q 004885          612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-----------  676 (725)
Q Consensus       612 Lasgs~--DgtIrvWDl~~~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~v-----------  676 (725)
                      |+++..  +++|.+||+.+.+ .+.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..           
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~-~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~  198 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGD-YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV  198 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTE-EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred             EEEECCCCCCeEEEEECCCCc-EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence            999874  6899999999876 4554 32 21 1222444554433444444455555554432 2211           


Q ss_pred             --------------------------------------EEEec-----------CCCeEEEEEecCCCEEEEEEc-----
Q 004885          677 --------------------------------------GVFKC-----------QSGATQMRFQPRLGRILAAAI-----  702 (725)
Q Consensus       677 --------------------------------------~~~~~-----------~~~V~sv~fspdg~~Lla~s~-----  702 (725)
                                                            ..+..           ..+...++|+|++++++++..     
T Consensus       199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence                                                  11110           011112789999888887654     


Q ss_pred             ------CCeEEEEECCCCeEEEEEeCC
Q 004885          703 ------ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       703 ------Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                            ++.|.+||+.+++++.++..|
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~  305 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGR  305 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecC
Confidence                  358999999999999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.20  E-value=1.5e-09  Score=112.78  Aligned_cols=156  Identities=12%  Similarity=0.107  Sum_probs=112.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          556 SKVESCHFSPDGKLLATGGH-----------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~-----------------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      ..+.+++++|+|+++++.+.                 .+.|..++.. ++ +..+..+...+..++|+|+++.|++.+.+
T Consensus       115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred             CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence            34778999999998887321                 2356556554 44 34455567778999999999988777778


Q ss_pred             CeEEEEECC-CCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEE-ecCC
Q 004885          619 RTVRVWDTE-NPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF-QPRL  694 (725)
Q Consensus       619 gtIrvWDl~-~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~f-spdg  694 (725)
                      +.|.+||+. ++..  ....+..+...+.+++++++|. ++++.  ++.|.+||.. ++.+..+.....+++++| .|++
T Consensus       193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~  268 (296)
T 3e5z_A          193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEG  268 (296)
T ss_dssp             TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTS
T ss_pred             CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCC
Confidence            999999997 3331  1233333455677899999997 55555  7889999987 777777776444999999 5888


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEE
Q 004885          695 GRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      +.|++++.+ .|..++.++.++.+
T Consensus       269 ~~L~v~t~~-~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          269 RTLYMTVST-EFWSIETNVRGLEH  291 (296)
T ss_dssp             CEEEEEETT-EEEEEECSCCBCCC
T ss_pred             CEEEEEcCC-eEEEEEcccccccc
Confidence            888888765 56677777765433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.20  E-value=1.5e-10  Score=126.82  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-----------~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      .++.+++++...+|++|+.|+ ++||++++..           ..... .+.. |+.|+|  ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            589999999999999999885 6669865322           11222 3566 999999  89999999 889999999


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCe
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      +.+.. .......|...|.++.+.+.  . ++++..||.|.+||+.++....   ....|++++|+|+|  ++++..||.
T Consensus       113 v~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          113 LEELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred             chhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence            98876 45566677788888887755  2 6678889999999999887754   23689999999998  778999999


Q ss_pred             EEEEECCCCeE--EEEE
Q 004885          706 ISILDVETQVC--RLKL  720 (725)
Q Consensus       706 V~IwDl~tg~~--v~~l  720 (725)
                      |++|+..++++  .++|
T Consensus       184 i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             EEEEcCCCcccccccee
Confidence            99999998887  6777

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.17  E-value=1.8e-09  Score=115.01  Aligned_cols=183  Identities=13%  Similarity=0.025  Sum_probs=132.0

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      ++.++...++.|.+|+..                   +.+.+..+. .......++++++++++++...++.|.+||..+
T Consensus        55 ~lyv~~~~~~~v~viD~~-------------------t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDIN-------------------TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             EEEEEEGGGTEEEEEETT-------------------TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             EEEEEEcCCCEEEEEECc-------------------ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            344555556788888332                   223444443 345688999998885555544899999999999


Q ss_pred             CeEEEEeccCC-----CCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEE
Q 004885          587 FTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       587 ~~~i~~l~~H~-----~~V~~IafsPd~~~Lasgs--~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg  659 (725)
                      ++.+..+....     .....|++  ++..|++++  .+++|.+||+.+.. .+..+.. ......++++|+|+ +++++
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~-l~v~~  189 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNK-MWTIT  189 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSE-EEEEB
T ss_pred             CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCC-EEEEE
Confidence            98887765332     14567777  455666655  48899999999877 4555543 23457899999987 66666


Q ss_pred             eCC----------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          660 DNN----------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       660 s~D----------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      ..+          +.|.+||..+++.+..+..  ...+..++|+|++++|+++..  .|.+||+.+++.
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            544          7899999999998877765  346899999999999888755  899999988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=1.4e-08  Score=116.80  Aligned_cols=199  Identities=11%  Similarity=0.074  Sum_probs=142.0

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEc----CCCCEEEEEeC-CCcEE
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS----PDGKLLATGGH-DKKAV  580 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fS----pdg~~LaSgs~-Dg~V~  580 (725)
                      .+++.+++.|+.|.+|+....                 +.+.+..+.... ....++|+    |||++++++.+ ++.|.
T Consensus       208 Gr~lyv~~~dg~V~viD~~~~-----------------t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          208 GRYLFVIGRDGKVNMIDLWMK-----------------EPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             SCEEEEEETTSEEEEEETTSS-----------------SCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCC-----------------CCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence            347778888999999954211                 113334444322 36789999    69998887765 58999


Q ss_pred             EEECCCCeEEEEecc----------CCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEE
Q 004885          581 LWCTESFTVKSTLEE----------HTQ-WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (725)
Q Consensus       581 IWdl~~~~~i~~l~~----------H~~-~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~f  648 (725)
                      |+|..+.+.+.++.-          |.. .+..|.+++++.. +++...+|.|.++|...................++.|
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~  349 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  349 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence            999999988877642          222 6788888887655 4555567999999998765322223334456788999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe---EEEE-EecCCCEEEEEE--cCCeEEEEECCC-------C
Q 004885          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA---TQMR-FQPRLGRILAAA--IENYISILDVET-------Q  714 (725)
Q Consensus       649 sP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V---~sv~-fspdg~~Lla~s--~Dg~V~IwDl~t-------g  714 (725)
                      +|+++++++++..++.|.++|+.+++.+..+.. ....   ..+. ++|+++.+++.+  .++.|.|+|..+       .
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence            999999888888889999999999998877764 2111   1222 588877766655  368999999998       6


Q ss_pred             eEEEEEeC
Q 004885          715 VCRLKLQV  722 (725)
Q Consensus       715 ~~v~~l~G  722 (725)
                      +.+.++++
T Consensus       430 kvv~~i~~  437 (567)
T 1qks_A          430 KILDSFPA  437 (567)
T ss_dssp             SEEEEEEC
T ss_pred             EEEEEEec
Confidence            78888875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.17  E-value=5.4e-10  Score=131.54  Aligned_cols=160  Identities=9%  Similarity=0.004  Sum_probs=117.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 004885          554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  620 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg-----~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt--------  620 (725)
                      |...+..++|||||++||.++.++     .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998776543     8999999998876543322 23678999999999999888766        


Q ss_pred             --------EEEEECCCCCee-eEEEe--cCCCCeEEEEEccCCCeEEEEEeC----CCcEEEEECCC------Ce-eEEE
Q 004885          621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV  678 (725)
Q Consensus       621 --------IrvWDl~~~~~~-l~~~~--~h~~~V~sl~fsP~g~~llaSgs~----Dg~I~IwDl~t------~~-~v~~  678 (725)
                              |++|++.++... ...+.  .|...+..+.|+|+|++++++...    +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    999999876521 22333  245568899999999977766542    56899999986      43 3444


Q ss_pred             Eec-CCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCCe
Q 004885          679 FKC-QSGATQMRFQPRLGRILAAAIE----NYISILDVETQV  715 (725)
Q Consensus       679 ~~~-~~~V~sv~fspdg~~Lla~s~D----g~V~IwDl~tg~  715 (725)
                      +.. ...+.. .|+|+|+.|+..+.+    +.|.+||+.++.
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            443 334444 588999988877763    369999998873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.16  E-value=7.9e-09  Score=112.69  Aligned_cols=170  Identities=9%  Similarity=0.010  Sum_probs=124.2

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEcCCC
Q 004885          547 EFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSL  609 (725)
Q Consensus       547 ~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~IafsPd~  609 (725)
                      .+..+.....+  .++|+|||++|+++.          .++.|.+||..+.+.+..+.--       ......++|+||+
T Consensus        59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG  136 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence            34445443333  899999999998885          3678999999988877766421       1234589999999


Q ss_pred             CEEEEEeC--CCeEEEEECCCCCeeeEE-Eec------------------------------------------------
Q 004885          610 SRLATSSA--DRTVRVWDTENPDYSLRT-FTG------------------------------------------------  638 (725)
Q Consensus       610 ~~Lasgs~--DgtIrvWDl~~~~~~l~~-~~~------------------------------------------------  638 (725)
                      ++|++++.  +..|.++| .+++ .+.. +..                                                
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~  214 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCC-EEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcce
Confidence            99998874  47899999 7765 2222 100                                                


Q ss_pred             --CC------------------------------------------------CCeEEEEEccCCCeEEEEEeC-------
Q 004885          639 --HS------------------------------------------------TTVMSLDFHPSKEDLLCSCDN-------  661 (725)
Q Consensus       639 --h~------------------------------------------------~~V~sl~fsP~g~~llaSgs~-------  661 (725)
                        +.                                                .....+.|+|+++.++++...       
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence              00                                                001115667777777766541       


Q ss_pred             --CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCeEEEEE
Q 004885          662 --NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL  720 (725)
Q Consensus       662 --Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s-~Dg~V~IwDl~tg~~v~~l  720 (725)
                        ++.|.++|+.+++.+..+.......++.|+|||+ .++++. .++.|.|||+.+++.+.++
T Consensus       295 ~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence              3579999999999999998777899999999999 677766 4899999999999999884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.15  E-value=1.8e-08  Score=105.44  Aligned_cols=193  Identities=11%  Similarity=0.033  Sum_probs=130.8

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      .++.+...++.|..|......                 .   ..+ .+...+.+++|+++|+++++.  +..|.+||.++
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~~-----------------~---~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~   82 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTKQ-----------------V---QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKE   82 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTCC-----------------E---EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECCCCc-----------------E---EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCC
Confidence            356666667888888432221                 0   111 124569999999999955553  56899999988


Q ss_pred             CeEEEEecc----CCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC
Q 004885          587 FTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (725)
Q Consensus       587 ~~~i~~l~~----H~~~V~~IafsPd~~~Lasgs~D---------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~  653 (725)
                      ++.......    ....+++++++|+++++++...+         ....||.+.... .+..+..+......++|+|+++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSC
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCC
Confidence            765433321    12458899999999977655322         334566555433 2333333445678999999999


Q ss_pred             eEEEEEeCCCcEEEEEC--CCCeeE--EEE---ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          654 DLLCSCDNNSEIRYWSI--NNGSCA--GVF---KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       654 ~llaSgs~Dg~I~IwDl--~t~~~v--~~~---~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .++++.+.++.|.+||+  .++...  ..+   .. ...+..++++++|..+++...++.|.+||.++|+++..+..+
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            88888877889999997  455432  122   11 345789999999877777667789999999999998888755

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.15  E-value=5.9e-09  Score=108.35  Aligned_cols=165  Identities=12%  Similarity=0.136  Sum_probs=115.5

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecc----CCCCeEEEEEcCCCCEEEEEeCC---------
Q 004885          554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQWITDVRFSPSLSRLATSSAD---------  618 (725)
Q Consensus       554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~-l~~----H~~~V~~IafsPd~~~Lasgs~D---------  618 (725)
                      +...+.+++++++ ++++++. .+..|.+||.+ ++.... ...    ....+.+++++++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4466899999999 6655554 44579999988 665433 221    12458899999999887776655         


Q ss_pred             ------CeEEEEECCCCCeeeEEEecCCCCeEEEEEc----cCCCeEEEEEeCCCcEEEEECC-CCeeE-----EEEecC
Q 004885          619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH----PSKEDLLCSCDNNSEIRYWSIN-NGSCA-----GVFKCQ  682 (725)
Q Consensus       619 ------gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fs----P~g~~llaSgs~Dg~I~IwDl~-t~~~v-----~~~~~~  682 (725)
                            +.|..||.. +.  +..+..+......++|+    |+++.++++...++.|.+||+. ++...     ..+...
T Consensus       147 ~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             TTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                  567777765 33  33333344557889999    9987677777778899999986 45421     222222


Q ss_pred             --CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          683 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       683 --~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                        ..+..++++++|..+++...++.|.+||.++++.+..+..+
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~  266 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence              45888999999887777777899999999977766666544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.14  E-value=3.3e-08  Score=101.37  Aligned_cols=160  Identities=13%  Similarity=0.061  Sum_probs=116.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      +...+.+++++++++++++...++.|..||.........+......+.+|++++++.++++...++.|.+||. ++....
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~  133 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE  133 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence            4467999999999998888777889999998632222222234567899999999988888777889999999 544222


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~-~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      .....+...+.++++++++. ++++...++.|.+||. +++.... +.. ...+..+++++++..+++...++.|.+||.
T Consensus       134 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          134 YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            22233456789999999986 6666666789999999 6665443 221 346889999999876555555789999999


Q ss_pred             CCCeEE
Q 004885          712 ETQVCR  717 (725)
Q Consensus       712 ~tg~~v  717 (725)
                       +++..
T Consensus       212 -~g~~~  216 (299)
T 2z2n_A          212 -SGEIT  216 (299)
T ss_dssp             -TCCEE
T ss_pred             -CCcEE
Confidence             66543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.14  E-value=1.4e-09  Score=114.92  Aligned_cols=152  Identities=9%  Similarity=0.051  Sum_probs=104.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------CeE
Q 004885          557 KVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------RTV  621 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg-------~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--------gtI  621 (725)
                      .+.+++|+||| +++++..+.       ...||.+++++. ..+..+ ..+..+  +|++++|+.++.+        ..|
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence            68899999999 888876652       345554445444 344444 555554  9999988877754        367


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~s-l~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~  700 (725)
                      .+||  ++. ......++...+.. +.|+ ++  ++++++.++.++|| +.+++....+.....|.+++|+|  ..++++
T Consensus       247 ~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~  317 (347)
T 2gop_A          247 YIYD--GKE-VMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLK  317 (347)
T ss_dssp             EEEC--SSC-EEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEE
T ss_pred             EEEC--CCc-eEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEE
Confidence            7787  443 33334455677886 9999 76  77788889999999 87776655555566789999999  677777


Q ss_pred             EcCCeE-EEEECCCCeEEEEEeCCC
Q 004885          701 AIENYI-SILDVETQVCRLKLQVSH  724 (725)
Q Consensus       701 s~Dg~V-~IwDl~tg~~v~~l~GH~  724 (725)
                      +.++.. .||.+. ++ ...|..|.
T Consensus       318 ~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          318 ETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             ECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             cCCCChHHheEeC-Cc-EEEecccc
Confidence            776654 677666 55 44566654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.12  E-value=4.2e-09  Score=112.17  Aligned_cols=157  Identities=10%  Similarity=0.046  Sum_probs=114.5

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----------CeEEEE
Q 004885          557 KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----------RTVRVW  624 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----------gtIrvW  624 (725)
                      ....+++  ++..|+++.  .++.|.+||+.+++.+..+.. ......++++|++++++++..+          +.|.+|
T Consensus       132 ~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          132 STEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             BCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            3556777  345555554  488999999999988877764 3346789999999877776654          789999


Q ss_pred             ECCCCCeeeEEEecC-CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE--Eec-CCCeEEEEEecCCCEEEEE
Q 004885          625 DTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FKC-QSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h-~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~--~~~-~~~V~sv~fspdg~~Lla~  700 (725)
                      |..+.. ....+... ......++|+|+++.++++ .  +.|.+||+.+++....  +.. ......|+++|+++.|+++
T Consensus       209 d~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~-~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          209 DAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWI-N--NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             ETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEE-S--SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             ECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEE-c--cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            998876 44444422 2468999999998866654 3  2899999998776421  111 3568999999966666665


Q ss_pred             E-----cCCeEEEEECCCCeEEEEEe
Q 004885          701 A-----IENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       701 s-----~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .     .++.|.+||.. ++.+.++.
T Consensus       285 ~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          285 DAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             ECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             cccccccCCEEEEECCC-CCEEEEEE
Confidence            4     47899999998 88888775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.11  E-value=6.3e-08  Score=99.24  Aligned_cols=156  Identities=10%  Similarity=0.052  Sum_probs=115.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ....+.++++.++++++++...++.|.+||. +++... .+..+...+.++++++++.++++...++.|.+||. ++...
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            4557899999999998888777889999998 544433 23334567899999999988877777889999999 55522


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      ..........+.++++++++. ++++...++.|.+||. ++.... +..   ...+.+++++++|..+++...++.|.+|
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence            222333445688999999987 6666666788999999 666443 322   3568999999998755554467899999


Q ss_pred             ECCCCe
Q 004885          710 DVETQV  715 (725)
Q Consensus       710 Dl~tg~  715 (725)
                      |. +++
T Consensus       252 d~-~g~  256 (299)
T 2z2n_A          252 TS-NNI  256 (299)
T ss_dssp             ET-TTE
T ss_pred             CC-CCc
Confidence            98 454

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.10  E-value=7.7e-10  Score=130.01  Aligned_cols=159  Identities=11%  Similarity=0.035  Sum_probs=114.2

Q ss_pred             CCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCeEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 004885          553 ASTSKVESCHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT-----  620 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~La-----Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V--~~IafsPd~~~Lasgs~Dgt-----  620 (725)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4555689999999999988     34445789999999887541  1122222  68999999999999998776     


Q ss_pred             --------EEEEECCCCCe---eeEEEecCCCCeEEEEEccCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCeE
Q 004885          621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT  686 (725)
Q Consensus       621 --------IrvWDl~~~~~---~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g--~I~IwDl~t~~~v~~~~~~~~V~  686 (725)
                              |++|++.++..   .+.....|...+.++.|+|+|++++++...+ +  .|++||..++...........+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    99999988752   2222334556789999999999777665533 2  67777776666555555555666


Q ss_pred             EEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 004885          687 QMRFQPRLGRILAAAI----ENYISILDVETQV  715 (725)
Q Consensus       687 sv~fspdg~~Lla~s~----Dg~V~IwDl~tg~  715 (725)
                      ...| ++|. +++.+.    ++.|.+||+.++.
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence            7667 5666 555554    5789999998775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.05  E-value=5e-09  Score=109.30  Aligned_cols=151  Identities=10%  Similarity=0.038  Sum_probs=122.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCe
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV  643 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V  643 (725)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|++++|+  +.++.|..||. +++ .+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence            46789999999999999999999999998766 5789999999999888  45788999999 666 56677654 3468


Q ss_pred             EEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          644 MSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~-------~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      .++.+.++|..++ +.+. ++.|..+|. +++.+..+...       .....+++.++|.+|++...++.|.+||.+ |+
T Consensus        80 ~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            8999999998544 5554 677878885 68888777632       234567789999999988889999999998 99


Q ss_pred             EEEEEeCC
Q 004885          716 CRLKLQVS  723 (725)
Q Consensus       716 ~v~~l~GH  723 (725)
                      .+.++..+
T Consensus       157 ~~w~~~~~  164 (276)
T 3no2_A          157 LLNSVKLS  164 (276)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            99888753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=1.3e-07  Score=100.58  Aligned_cols=162  Identities=12%  Similarity=-0.017  Sum_probs=111.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCeEEEEEcCCCCEEEEEeC------CCeEEEE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA------DRTVRVW  624 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~----H~~~V~~IafsPd~~~Lasgs~------DgtIrvW  624 (725)
                      ...|.+++|+++|++++++ .+ .|.+||..+++.......    ....+.+++++|+++++++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            3569999999999877765 44 499999988775433221    1246889999999987766542      2345555


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CC-ee-----EEEEec-CCCeEEEEEecCCC
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG-SC-----AGVFKC-QSGATQMRFQPRLG  695 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~-~~-----v~~~~~-~~~V~sv~fspdg~  695 (725)
                      |  ++.  +..+..+......++|+|+++.++++...++.|.+||+.  ++ ..     +..+.. ...+..++++++|.
T Consensus       167 ~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~  242 (326)
T 2ghs_A          167 A--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  242 (326)
T ss_dssp             E--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             e--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence            5  333  333333334678999999998777777777899999986  55 32     222221 34477899999987


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .+++...++.|.+||. +++.+..+..+
T Consensus       243 lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             EEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence            7766666789999998 57777766543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.02  E-value=4.8e-08  Score=107.71  Aligned_cols=161  Identities=11%  Similarity=0.066  Sum_probs=113.9

Q ss_pred             EEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l----~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      ++|++++++|+++..++  .|.+|+.........+    ..+...+.+++++|++..|+++..++.|+.||..++...+.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            99999999999988766  7999988765443344    22456788999999656666677789999999987762211


Q ss_pred             E---EecCCCCe-E-EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---------------CCeEEEEEecCC
Q 004885          635 T---FTGHSTTV-M-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------------SGATQMRFQPRL  694 (725)
Q Consensus       635 ~---~~~h~~~V-~-sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---------------~~V~sv~fspdg  694 (725)
                      .   ..++.... . .++|+|++..++++...++.|+.||.... ........               .....|+|+++|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            0   22222222 3 89999976778888778899999998743 22222211               247899999998


Q ss_pred             CEEEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885          695 GRILAAA-IENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       695 ~~Lla~s-~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ..+++-. .++.|++||+.+++. .++.|+
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence            8666666 678999999888864 445444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.01  E-value=7.1e-09  Score=112.97  Aligned_cols=178  Identities=6%  Similarity=-0.013  Sum_probs=127.6

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEc
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFS  606 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~Iafs  606 (725)
                      +.+.+.++..-..+  .+.|+||+++++++.          .++.|.+||+.+++.+.++...       ......++|+
T Consensus        55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence            34555666544455  799999999888886          3789999999999999888643       1245689999


Q ss_pred             CCCCEEEEEeC--CCeEEE--EECCC------CCe--------------------eeEEEec------CC----------
Q 004885          607 PSLSRLATSSA--DRTVRV--WDTEN------PDY--------------------SLRTFTG------HS----------  640 (725)
Q Consensus       607 Pd~~~Lasgs~--DgtIrv--WDl~~------~~~--------------------~l~~~~~------h~----------  640 (725)
                      ||+++++++..  +..|.+  +|+.+      +..                    ....+..      +.          
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v  212 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence            99999999875  356888  87743      000                    0000000      00          


Q ss_pred             ------------------CCe---------------------------------EEEEEccCCCeEEEEEe---C-----
Q 004885          641 ------------------TTV---------------------------------MSLDFHPSKEDLLCSCD---N-----  661 (725)
Q Consensus       641 ------------------~~V---------------------------------~sl~fsP~g~~llaSgs---~-----  661 (725)
                                        +.|                                 ..++|+|+++.++++..   .     
T Consensus       213 g~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~  292 (368)
T 1mda_H          213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             CCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence                              000                                 01678999988887654   2     


Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EEEEE-cCCeEEEEECCCCeEEEEEeCC
Q 004885          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAAA-IENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Lla~s-~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ++.+.+||+.+.+.+..+........|+|+|||++ +++.. .++.|.|+|+.+++.+.+++..
T Consensus       293 ~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            23566999999999998887668999999999985 45555 4899999999999999998744

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.00  E-value=1e-08  Score=113.67  Aligned_cols=174  Identities=11%  Similarity=0.053  Sum_probs=128.8

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCeEEEEEc
Q 004885          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFS  606 (725)
Q Consensus       544 ~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs----------~Dg~V~IWdl~~~~~i~~l~~H-------~~~V~~Iafs  606 (725)
                      +.+.+..+..-..+  .++++||+++|+++.          .++.|.++|..+.+.+..+.--       ......+.|+
T Consensus       108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence            33555555544444  899999999888775          3678999999999988776421       1335678999


Q ss_pred             CCCCEEEEEeC--CCeEEEEECCCCCeeeEEEec----------------------------------------------
Q 004885          607 PSLSRLATSSA--DRTVRVWDTENPDYSLRTFTG----------------------------------------------  638 (725)
Q Consensus       607 Pd~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~~----------------------------------------------  638 (725)
                      ||+++|+++..  +++|.+.|+.+.+ .+..+.-                                              
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            99999999875  5789999988754 1211110                                              


Q ss_pred             -------------------CCC---------------------------------CeEEEEEccCCCeEEEEEeC-----
Q 004885          639 -------------------HST---------------------------------TVMSLDFHPSKEDLLCSCDN-----  661 (725)
Q Consensus       639 -------------------h~~---------------------------------~V~sl~fsP~g~~llaSgs~-----  661 (725)
                                         ..+                                 ....++|+|+++.++++...     
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence                               000                                 00015677777777776542     


Q ss_pred             ----CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EEEEEEc-CCeEEEEECCCCeEEEEE
Q 004885          662 ----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAAI-ENYISILDVETQVCRLKL  720 (725)
Q Consensus       662 ----Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~Lla~s~-Dg~V~IwDl~tg~~v~~l  720 (725)
                          ++.|.++|+.+.+.+..+........|.|+||++ +++++.. ++.|.|+|+.+++.++++
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                3479999999999999998766799999999999 8888874 899999999999999997

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.97  E-value=4.2e-07  Score=93.05  Aligned_cols=159  Identities=9%  Similarity=-0.006  Sum_probs=115.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      .+...+.++++.++++++++...++.|.+||.. ++... .+......+.++++++++.++++...++.|..||.. +..
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            344678999999999988877768899999987 54432 223344678999999999888877778899999987 442


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                      ....+......+.++++++++. ++++...++.|.+||. +++... +..   ...+..+++++++..+++....+.|.+
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            2222233446789999999988 6666666788999998 555543 332   346899999999866555555678999


Q ss_pred             EECCCCeEE
Q 004885          709 LDVETQVCR  717 (725)
Q Consensus       709 wDl~tg~~v  717 (725)
                      ||. +++..
T Consensus       214 ~~~-~g~~~  221 (300)
T 2qc5_A          214 ITT-TGEIS  221 (300)
T ss_dssp             ECT-TCCEE
T ss_pred             EcC-CCcEE
Confidence            998 55443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.97  E-value=2.4e-08  Score=118.23  Aligned_cols=162  Identities=8%  Similarity=0.002  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCeE--EEEe--ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFTV--KSTL--EEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~--------------V~IWdl~~~~~--i~~l--~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      +..++|+|| +.|+.++.|+.              |++|++.++..  ...+  ..+...+..+.|+||+++|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 98888887654              89999876541  2233  33444689999999999988776543


Q ss_pred             -----eEEEEECCCCCee-eEEEecCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCCC--eeEEEEec-CCCeEE
Q 004885          620 -----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNG--SCAGVFKC-QSGATQ  687 (725)
Q Consensus       620 -----tIrvWDl~~~~~~-l~~~~~h~~~V~sl~fsP~g~~llaSgs~---Dg~I~IwDl~t~--~~v~~~~~-~~~V~s  687 (725)
                           .|.+||+.++... ...+..+...+.... +|+|+.+++....   ++.|.+||+.++  .....+.. ...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999876322 556666665565554 4888877766543   345999999874  44444444 233567


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeC
Q 004885          688 MRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQV  722 (725)
Q Consensus       688 v~fspdg~~Lla~s~Dg~V~IwDl~-tg~~v~~l~G  722 (725)
                      ++|. ++..+++...|+..+||.+. +++.++.+..
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~  403 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL  403 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence            7787 43455666668876666543 4566666653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.97  E-value=1e-08  Score=121.41  Aligned_cols=166  Identities=10%  Similarity=0.036  Sum_probs=113.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 004885          554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  620 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~D-----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt--------  620 (725)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33458899999999998877654     36999999998876432 12222467899999 99888877654        


Q ss_pred             ------EEEEECCCCCee-eEEEec--CCCCeEEEEEccCCCeEEEEEeC----CCcEEEEECCCC--eeEEEEe-cCCC
Q 004885          621 ------VRVWDTENPDYS-LRTFTG--HSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG  684 (725)
Q Consensus       621 ------IrvWDl~~~~~~-l~~~~~--h~~~V~sl~fsP~g~~llaSgs~----Dg~I~IwDl~t~--~~v~~~~-~~~~  684 (725)
                            |++|++.++... ...+..  +...+..+.|+|+|+++++++..    +..|++||+.++  .+...+. ....
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  899999776521 223332  33458999999999977766642    348999999887  4133443 3444


Q ss_pred             eEEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEeC
Q 004885          685 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQV  722 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~D----g~V~IwDl~tg--~~v~~l~G  722 (725)
                      +... ++|+|+.|+..+.+    +.|.+||+.++  .....+.+
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~  361 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE  361 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence            5444 45888988888764    45999999884  34444433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.96  E-value=5.6e-07  Score=92.13  Aligned_cols=158  Identities=7%  Similarity=-0.034  Sum_probs=113.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ....+.++++.++++++++...++.|.+||.. ++... .+......+.+++++++++++++...++.|.+||. ++...
T Consensus       102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            34668999999999988887778899999987 55442 23334567899999999987666666889999998 44422


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-e-cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      ......+...+.++++++++. ++++....+.|.+||. ++...... . ....+.+|+++++|..+++...++.|.+||
T Consensus       180 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          180 EYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             EeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            222223445689999999886 6666666778999998 45544332 2 245689999999987555554578999999


Q ss_pred             CCCCeE
Q 004885          711 VETQVC  716 (725)
Q Consensus       711 l~tg~~  716 (725)
                      . +++.
T Consensus       258 ~-~g~~  262 (300)
T 2qc5_A          258 N-DNTI  262 (300)
T ss_dssp             T-TSCE
T ss_pred             C-CCcE
Confidence            8 4543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.94  E-value=1.2e-10  Score=126.59  Aligned_cols=187  Identities=10%  Similarity=-0.017  Sum_probs=104.9

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      +..+++++.|+.|..|+..++.                   .+-.++.  +.+.+..+..++.++++++.|+.|+.||..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~-------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGS-------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC-------------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred             CCEEEEEcCCCEEEEEECCCCC-------------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence            3578889999999999654431                   2222222  345555555678788888899999999999


Q ss_pred             CCeEEEEeccCCC-CeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          586 SFTVKSTLEEHTQ-WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       586 ~~~~i~~l~~H~~-~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      +++.+..+..+.. .+. +..+. .+..|++++.|+.|+.||..+++ .+..+..+.    .+.++|++. .+++++.|+
T Consensus        68 tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~~-~v~~~~~dg  140 (369)
T 2hz6_A           68 NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPSTS-LLYLGRTEY  140 (369)
T ss_dssp             --CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEE
T ss_pred             CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccCC-EEEEEecCC
Confidence            8887766654321 111 00111 34578888889999999999987 454444332    245567666 555777789


Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg---~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|+.||.++++.+..+.... .....+..+.   ..+++++.|+.|++||.++|+++-++.
T Consensus       141 ~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          141 TITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            99999999998877665311 2233344432   567788899999999999999887665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.92  E-value=8.1e-08  Score=99.66  Aligned_cols=155  Identities=14%  Similarity=0.247  Sum_probs=112.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCeEEEEeccCCCCeEEEEEc----CCCCEEEEE-
Q 004885          556 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSRLATS-  615 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~D---------------g~V~IWdl~~~~~i~~l~~H~~~V~~Iafs----Pd~~~Lasg-  615 (725)
                      ..+.+++++++|+++++...+               +.|..||.. ++.... ..+......++|+    |+++.|+.+ 
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEE
Confidence            358899999999988777655               567777765 544333 2334557889999    998766555 


Q ss_pred             eCCCeEEEEECC-CCCe----eeEEEecCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEE
Q 004885          616 SADRTVRVWDTE-NPDY----SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM  688 (725)
Q Consensus       616 s~DgtIrvWDl~-~~~~----~l~~~~~h~-~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv  688 (725)
                      ..++.|.+||+. ++..    ....+.++. ..+..++++++|. ++++...++.|.+||..+++.+..+.. ...+.++
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i  273 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL  273 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred             CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence            467899999986 3321    122233333 5688999999987 666766688999999987777766665 3679999


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          689 RFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       689 ~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                      +|++++.+|++++. ++.|.+|++..
T Consensus       274 ~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          274 HFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999986666654 68999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.90  E-value=5.5e-08  Score=114.34  Aligned_cols=153  Identities=12%  Similarity=0.057  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecc-CCCCeEEEEEcCCCCEEEEEeC---
Q 004885          559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEE-HTQWITDVRFSPSLSRLATSSA---  617 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~-------------V~IWdl~~~~----~i~~l~~-H~~~V~~IafsPd~~~Lasgs~---  617 (725)
                      ..++|+ |++.|+.++.|..             |++|++.+..    .+..... |...+..+.|+||+++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            567899 9999998888744             9999987653    3333333 5566889999999998755432   


Q ss_pred             -CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCee---EEEEecCCCeEEEEE
Q 004885          618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFKCQSGATQMRF  690 (725)
Q Consensus       618 -DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~~---v~~~~~~~~V~sv~f  690 (725)
                       +..|.+||+.++......+..+...+... |++++..+++....+   +.|.++|+.++.+   .....+...+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             35899999988754566677776666665 777888788777654   5799999988755   33333334444  89


Q ss_pred             ecCCCEEEEEEcCC---eEEEEECCCCe
Q 004885          691 QPRLGRILAAAIEN---YISILDVETQV  715 (725)
Q Consensus       691 spdg~~Lla~s~Dg---~V~IwDl~tg~  715 (725)
                      ++++++|++...++   .|++||+.++.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCCe
Confidence            99999888877643   68999998553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.87  E-value=2.9e-07  Score=96.41  Aligned_cols=204  Identities=9%  Similarity=0.027  Sum_probs=130.3

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+..-....+|++++.              .++.++..++.|..|.. ++                    .+..+..+..
T Consensus        42 ~~~~~~egp~~~~~g~--------------~l~~~d~~~~~i~~~~~-~g--------------------~~~~~~~~~~   86 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQR--------------TLVWSDLVGRRVLGWRE-DG--------------------TVDVLLDATA   86 (305)
T ss_dssp             CCCSSEEEEEEEGGGT--------------EEEEEETTTTEEEEEET-TS--------------------CEEEEEESCS
T ss_pred             cCCcCccCCeEeCCCC--------------EEEEEECCCCEEEEEeC-CC--------------------CEEEEeCCCC
Confidence            3444455667777664              35666667788888832 11                    0122334556


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEE----EeC-----------
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLAT----SSA-----------  617 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Las----gs~-----------  617 (725)
                      .+.+++|+++|+++++...++.|.+|+.+ ++........    ...+.+++++|++++++|    |..           
T Consensus        87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~  165 (305)
T 3dr2_A           87 FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE  165 (305)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred             ccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence            78999999999977666566889999986 4433222111    234678999999998886    332           


Q ss_pred             --CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC-----CCcEEEEECCCCeeE--EEEe--cCCCeE
Q 004885          618 --DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCA--GVFK--CQSGAT  686 (725)
Q Consensus       618 --DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-----Dg~I~IwDl~t~~~v--~~~~--~~~~V~  686 (725)
                        .+.|..||..++..  ..+. .......++|+|+++.++++...     ++.|++||+..+...  ..+.  ....+.
T Consensus       166 ~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd  242 (305)
T 3dr2_A          166 LAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD  242 (305)
T ss_dssp             SSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred             cCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence              24677777766652  2222 33567889999999866655543     268999998765421  1121  134466


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .++++++|. |.++.. +.|.+||. .++.+..+..
T Consensus       243 gi~~d~~G~-lwv~~~-~gv~~~~~-~g~~~~~~~~  275 (305)
T 3dr2_A          243 GFCVDRGGW-LWSSSG-TGVCVFDS-DGQLLGHIPT  275 (305)
T ss_dssp             SEEECTTSC-EEECCS-SEEEEECT-TSCEEEEEEC
T ss_pred             eEEECCCCC-EEEecC-CcEEEECC-CCCEEEEEEC
Confidence            789999987 444444 45999998 5777766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.85  E-value=3.4e-07  Score=95.56  Aligned_cols=145  Identities=12%  Similarity=0.157  Sum_probs=102.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 004885          556 SKVESCHFSPDGKLLATGGHD---------KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVW  624 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~D---------g~V~IWdl~~-~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvW  624 (725)
                      ..+.+++++|+|+++++...+         ....||.++. ++.. .+..+....+.++|+|+++.|+.+ +.++.|.+|
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~  176 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF  176 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence            347899999999977655322         2345555543 3333 233344567899999999877554 557899999


Q ss_pred             ECC--CCCe----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEe-cCCCE
Q 004885          625 DTE--NPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR  696 (725)
Q Consensus       625 Dl~--~~~~----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fs-pdg~~  696 (725)
                      |++  ++..    .+..+..+......++++++|. ++++...++.|.+||..+++.+..+... ..+++++|. |+++.
T Consensus       177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             eccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence            974  4431    1122233345688999999986 7777777788999999999999888864 679999998 88888


Q ss_pred             EEEEEc
Q 004885          697 ILAAAI  702 (725)
Q Consensus       697 Lla~s~  702 (725)
                      |++++.
T Consensus       256 L~vt~~  261 (297)
T 3g4e_A          256 MYVTCA  261 (297)
T ss_dssp             EEEEEB
T ss_pred             EEEEcC
Confidence            777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.85  E-value=4.2e-07  Score=100.16  Aligned_cols=155  Identities=12%  Similarity=0.026  Sum_probs=108.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE----eccCCCCe--EEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWI--TDVRFSPS-LSRLATSSADRTVRVWDT  626 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~----l~~H~~~V--~~IafsPd-~~~Lasgs~DgtIrvWDl  626 (725)
                      +...+.+++++|++..|+++..++.|+.||..++.....    ..++....  ..++|+|+ +.++++...++.|+.||.
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            456688999999555566677789999999987654332    22222222  39999995 555555566889999998


Q ss_pred             CCCCeeeEEEecCC---------------CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec---------
Q 004885          627 ENPDYSLRTFTGHS---------------TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC---------  681 (725)
Q Consensus       627 ~~~~~~l~~~~~h~---------------~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~---------  681 (725)
                      +..   +..+.++.               .....++|+|+|. ++++-. .+++|+.||+.++........         
T Consensus       297 ~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g  372 (409)
T 3hrp_A          297 DGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDG  372 (409)
T ss_dssp             TCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCB
T ss_pred             CCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCC
Confidence            753   33443332               3478999999988 777777 788999999888875444332         


Q ss_pred             ------CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          682 ------QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       682 ------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                            -.....|++++++..+++-..++.|+.++++
T Consensus       373 ~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          373 TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence                  1348899999996555555557888888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.81  E-value=5.2e-08  Score=114.56  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=111.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCC-------
Q 004885          553 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADR-------  619 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSg-----s~Dg~V~IWdl~~~~~i~~-l~~H~~~V~~IafsPd~~~Lasgs~Dg-------  619 (725)
                      +|...|..++|||||++||.+     +++..|+|||+.+++.+.. +.+  .....++|+ |++.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            455568899999999988843     2335799999999886543 221  113577899 999999888774       


Q ss_pred             ------eEEEEECCCCCe---eeEEEec-CCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCCCe-eEEEEec-CCC
Q 004885          620 ------TVRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSG  684 (725)
Q Consensus       620 ------tIrvWDl~~~~~---~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~D---g~I~IwDl~t~~-~v~~~~~-~~~  684 (725)
                            .|++|++.++..   ++..... |...+.++.|+|+|++++++...+   ..|++||+.++. ....+.. ...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                  399999987652   2222233 455678999999999887776533   589999998763 3334433 344


Q ss_pred             eEEEEEecCCCEEEEEEc-C---CeEEEEECCCCeE
Q 004885          685 ATQMRFQPRLGRILAAAI-E---NYISILDVETQVC  716 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~-D---g~V~IwDl~tg~~  716 (725)
                      .... |+++++.|+..+. +   +.|.++|+.++.+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~  317 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP  317 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            4444 7777787776655 2   6799999988754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=7.5e-06  Score=83.68  Aligned_cols=162  Identities=7%  Similarity=-0.027  Sum_probs=113.5

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCe
Q 004885          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY  631 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---DgtIrvWDl~~~~~  631 (725)
                      ....++++++++..|+.+ ...+.|.+++.+.......+.........++++|++..|+.+..   .+.|.+++++... 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-  157 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence            467899999976655544 45679999998754332223322356789999997676666654   3688888887543 


Q ss_pred             eeEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          632 SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       632 ~l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                       ...+ .........+++++++..++++....+.|.++|+........+........|++.  ++.|+++.. .+.|.++
T Consensus       158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence             2222 2233467899999998888888878889999999865544444433445677764  466666665 5899999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      |..+++.+.++.
T Consensus       235 d~~~g~~~~~i~  246 (267)
T 1npe_A          235 DLAISKEMDTFH  246 (267)
T ss_dssp             ETTTTEEEEEEC
T ss_pred             eCCCCCceEEEc
Confidence            999999998885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.73  E-value=5.9e-07  Score=94.02  Aligned_cols=159  Identities=8%  Similarity=0.059  Sum_probs=114.3

Q ss_pred             EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      .+..........+|+++++ ++++...++.|..|+.. ++ +..+..+...+..++++++++++++...++.|.+||.+ 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3444556678999999998 66777778999999984 44 34555567789999999999866665566889999986 


Q ss_pred             CCeeeEEEecC-----CCCeEEEEEccCCCeEEEE----EeC-------------CCcEEEEECCCCeeEEEEecCCCeE
Q 004885          629 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGAT  686 (725)
Q Consensus       629 ~~~~l~~~~~h-----~~~V~sl~fsP~g~~llaS----gs~-------------Dg~I~IwDl~t~~~v~~~~~~~~V~  686 (725)
                      +.  +..+..+     ...+.+++++|+|. ++++    +..             .+.|+.||..+++..... ......
T Consensus       116 g~--~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~  191 (305)
T 3dr2_A          116 GQ--AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN  191 (305)
T ss_dssp             SC--EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred             CC--EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence            44  2222211     13467899999998 5554    221             246888888777655444 435678


Q ss_pred             EEEEecCCCEEEEEEcC------CeEEEEECCCCe
Q 004885          687 QMRFQPRLGRILAAAIE------NYISILDVETQV  715 (725)
Q Consensus       687 sv~fspdg~~Lla~s~D------g~V~IwDl~tg~  715 (725)
                      .++|+|+++.|+++...      +.|.+||+..+.
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            89999999988887765      789999987654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.71  E-value=1.7e-06  Score=95.81  Aligned_cols=200  Identities=14%  Similarity=0.138  Sum_probs=135.0

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC-
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-------ASTSKVESCHFSPDGKLLATGGHD-  576 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~H~~~V~~i~fSpdg~~LaSgs~D-  576 (725)
                      ...+++.|-.++.|.+++...+..               ..+.+++++       .-...-..+.++|+| +++++..+ 
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~---------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~  158 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPR---------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE  158 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTT---------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred             CCEEEEccCCCCeEEEEECCCCCC---------------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence            345666777788999996533211               112222221       000123457788999 77776655 


Q ss_pred             -----CcEEEEECCCCeEEEEeccCC---CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCC
Q 004885          577 -----KKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENP  629 (725)
Q Consensus       577 -----g~V~IWdl~~~~~i~~l~~H~---~~V~~IafsPd~~~Lasgs-------------------~DgtIrvWDl~~~  629 (725)
                           +.|.++|..+++.+.++..-.   ..-+++.|+|+++.+++..                   .+.+|.+||+.+.
T Consensus       159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence                 789999999999999886322   2245688999999998885                   3689999999986


Q ss_pred             CeeeEEEecC-C-CCeEEEEE--ccCCCeEEEEEe-----CCCcEEEEECCCCeeE--EEE--ec---------------
Q 004885          630 DYSLRTFTGH-S-TTVMSLDF--HPSKEDLLCSCD-----NNSEIRYWSINNGSCA--GVF--KC---------------  681 (725)
Q Consensus       630 ~~~l~~~~~h-~-~~V~sl~f--sP~g~~llaSgs-----~Dg~I~IwDl~t~~~v--~~~--~~---------------  681 (725)
                      + .+.++..- . .....|.|  +|++++.++++.     .+++|.+|..+.+...  ..+  ..               
T Consensus       239 k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          239 K-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             E-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             c-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence            5 55555532 1 23445656  999998888887     7888988776554321  111  10               


Q ss_pred             --CCCeEEEEEecCCCEEEEEEc-CCeEEEEECC---CCeEEEEEe
Q 004885          682 --QSGATQMRFQPRLGRILAAAI-ENYISILDVE---TQVCRLKLQ  721 (725)
Q Consensus       682 --~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~---tg~~v~~l~  721 (725)
                        ...+..|.+++||++|+++.. .+.|.+||+.   +.+.+..+.
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~  363 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK  363 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence              134788999999999988877 6899999985   336666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.68  E-value=5.9e-07  Score=98.15  Aligned_cols=152  Identities=11%  Similarity=0.016  Sum_probs=114.1

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 004885          561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD  625 (725)
Q Consensus       561 i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWD  625 (725)
                      ....|+++.+++...     ++.|.++|..+.+.+..+..-..+ . ++++||++++++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445789998888765     679999999999999888754555 4 99999999988876          367899999


Q ss_pred             CCCCCeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEE
Q 004885          626 TENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (725)
Q Consensus       626 l~~~~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~L  697 (725)
                      ..+.+ .+..+.-.       ......+.|+|+|++++++... ++.|.++|+.+++.+.++...+ + ...+....+.+
T Consensus       116 ~~t~~-v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLL-PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCC-EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEEEEETTEE
T ss_pred             CCCCe-EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceeecCCCcee
Confidence            99987 55555321       1245679999999988877643 6899999999999999987533 2 22233334566


Q ss_pred             EEEEcCCeEEEEECCC-CeEE
Q 004885          698 LAAAIENYISILDVET-QVCR  717 (725)
Q Consensus       698 la~s~Dg~V~IwDl~t-g~~v  717 (725)
                      ++.+.||.+.++++.+ ++.+
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCE
T ss_pred             EEECCCCCEEEEECCCCCeEE
Confidence            7777888888888876 5543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.67  E-value=1.5e-06  Score=94.85  Aligned_cols=155  Identities=11%  Similarity=0.065  Sum_probs=108.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeEEEEeccC----CCCeE-EEEEc-CCCCEEEEEeCCCeEEEEECCCCCe-eeEEEe
Q 004885          566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEH----TQWIT-DVRFS-PSLSRLATSSADRTVRVWDTENPDY-SLRTFT  637 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H----~~~V~-~Iafs-Pd~~~Lasgs~DgtIrvWDl~~~~~-~l~~~~  637 (725)
                      ..+.+++.+.||++.+.++.+ ++.+.....+    ..++. ...|. +++++++ .+.+++|.+.|+.+... .+..+.
T Consensus       188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred             CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence            455677778899988888876 5543322111    12222 24564 5675555 55689999999976541 111111


Q ss_pred             ---------c-CCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC-EE
Q 004885          638 ---------G-HSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RI  697 (725)
Q Consensus       638 ---------~-h~~~V~sl~fsP~g~~llaSgs~---------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~-~L  697 (725)
                               + ..+.+..++++++++.++++-..         ..+|.++|+.+++.+..+.....+.+|.|++|++ +|
T Consensus       267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL  346 (386)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEE
T ss_pred             ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEE
Confidence                     0 11233457789999988876532         2479999999999999998877899999999997 66


Q ss_pred             EEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          698 LAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       698 la~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +++.. ++.|.|+|..+++.+++++
T Consensus       347 y~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          347 YALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEec
Confidence            66554 8999999999999999886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.67  E-value=5e-06  Score=88.11  Aligned_cols=143  Identities=11%  Similarity=0.061  Sum_probs=98.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC-
Q 004885          556 SKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE-  627 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~-  627 (725)
                      ..+.+++++|+|+++++...      .+.|..++  +++.. .+..+......++|+|+++.|+.+ +.++.|.+||++ 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            35889999999997765542      24566666  45443 333334567899999999877655 457899999986 


Q ss_pred             -CC-Ce----eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe-cCCCEEEE
Q 004885          628 -NP-DY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ-PRLGRILA  699 (725)
Q Consensus       628 -~~-~~----~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs-pdg~~Lla  699 (725)
                       ++ ..    .+..+......+..++++++|. ++++...++.|.+||. +++.+..+.. ...+++++|. ++++.|++
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence             44 21    1222223345678899999987 6656655688999998 5777777765 3469999998 88888776


Q ss_pred             EEcC
Q 004885          700 AAIE  703 (725)
Q Consensus       700 ~s~D  703 (725)
                      ++..
T Consensus       289 t~~~  292 (326)
T 2ghs_A          289 TSAR  292 (326)
T ss_dssp             EEBC
T ss_pred             EecC
Confidence            6553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.64  E-value=2.4e-09  Score=116.35  Aligned_cols=148  Identities=15%  Similarity=0.084  Sum_probs=84.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCC-CeE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM  644 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~-~V~  644 (725)
                      ++..|++++.|+.|+.||..+++.+..+..  ..+.+..+..++..+++++.|+.|+.||..+++ .+..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCccccc
Confidence            578899999999999999999999988876  456555566677788888899999999998877 3333332211 010


Q ss_pred             -EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       645 -sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                       +..+. .+. .+++++.|+.|+.||.++|+.+..+....   .+.++|+++.+++++.|+.|+.||.++|+++-++.
T Consensus        85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence             01111 223 45567778999999999999988776533   24566788899999999999999999998765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.63  E-value=2e-06  Score=93.53  Aligned_cols=148  Identities=12%  Similarity=-0.002  Sum_probs=107.8

Q ss_pred             EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 004885          563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE  627 (725)
Q Consensus       563 fSpdg~~LaSgs~--Dg---~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWDl~  627 (725)
                      ..|++++++++..  ..   +|.+||..+++.+..+..-..+  .++|+||+++|+++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777776653  22   8899999999988887654443  999999999999886          36789999998


Q ss_pred             CCCeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEE-EecCCCeEEEEEecCCC-EE
Q 004885          628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI  697 (725)
Q Consensus       628 ~~~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~-~~~~~~V~sv~fspdg~-~L  697 (725)
                      +.+ .+..+...       ......+.|+|+|++++++... ++.|.++| .+++.+.. +.....   +.+.|++. .+
T Consensus       106 t~~-~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFL-PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF  180 (373)
T ss_pred             CCc-EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence            776 44444321       1234579999999988776644 57899999 99998888 654332   44556554 44


Q ss_pred             EEEEcCCeEEEEECCCCeEEE
Q 004885          698 LAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg~~v~  718 (725)
                      ++.+.||.+.+||. +++.+.
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEEE
Confidence            55667899999999 876663

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.63  E-value=2.3e-06  Score=100.72  Aligned_cols=164  Identities=9%  Similarity=0.029  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCCC
Q 004885          559 ESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS  610 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~-------------------V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~~  610 (725)
                      ..++++|++.+|+.+..++.                   |..||.++++.+..+..  |.       ..+....+..+++
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            46888998889998887764                   99999999999988754  21       1222222223554


Q ss_pred             ---EEEEEeCCCeEEEEECCCCCeeeEEEec-CCCC--------------------------------------eEEEEE
Q 004885          611 ---RLATSSADRTVRVWDTENPDYSLRTFTG-HSTT--------------------------------------VMSLDF  648 (725)
Q Consensus       611 ---~Lasgs~DgtIrvWDl~~~~~~l~~~~~-h~~~--------------------------------------V~sl~f  648 (725)
                         .|+.++.+|.|+++|.++++ .+..... ....                                      -..++|
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCC-EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence               78889999999999999988 3321110 0000                                      112688


Q ss_pred             ccCCCeEEEEEeC--------------------------------------------CCcEEEEECCCCeeEEEEecCCC
Q 004885          649 HPSKEDLLCSCDN--------------------------------------------NSEIRYWSINNGSCAGVFKCQSG  684 (725)
Q Consensus       649 sP~g~~llaSgs~--------------------------------------------Dg~I~IwDl~t~~~v~~~~~~~~  684 (725)
                      +|+...+++....                                            +|.|+.||+.+++.+..++....
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~  476 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI  476 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence            8887744443211                                            37799999999999998887665


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +..-.+...++.+++++.|+.|++||.+||+.+.+++..
T Consensus       477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            555566777889999999999999999999999988744

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.62  E-value=1.6e-06  Score=92.51  Aligned_cols=164  Identities=10%  Similarity=0.050  Sum_probs=111.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccC------CCCeEEEEEcCCCCEEE-EEe---C
Q 004885          553 ASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA-TSS---A  617 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~-----Dg~V~IWdl~~~~~i~~l~~H------~~~V~~IafsPd~~~La-sgs---~  617 (725)
                      .|-..+.+++|+++++++++-..     ++.|.+||+.+++.+..+...      ...+..|++++++..++ +..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45677999999999886665433     578999999998877666432      24568999998655554 444   5


Q ss_pred             CCeEEEEECCCCCeeeEEEecC-----------------------------CCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 004885          618 DRTVRVWDTENPDYSLRTFTGH-----------------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h-----------------------------~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw  668 (725)
                      ++.|.+||+.++. ..+.+.+|                             ...+..|+|+|+++.++++......|+.+
T Consensus       144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            7899999998765 34444322                             12368899999998666555544456666


Q ss_pred             ECC---CCe--------eEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          669 SIN---NGS--------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       669 Dl~---t~~--------~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      +..   .+.        .+..+........++++++|..+++...++.|.+||.++++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence            532   111        0112222345678999999887777777899999999667643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.62  E-value=1.4e-06  Score=92.96  Aligned_cols=153  Identities=10%  Similarity=0.077  Sum_probs=107.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 004885          556 SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV  621 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd~~~Lasgs~-----DgtI  621 (725)
                      ..+..|+++++|+++++...  ++.++||.+.+++. ..+       ..|...+.+|+|+++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67899999999998888642  34355565545543 222       234568999999999876555433     5789


Q ss_pred             EEEECCCCCeeeEEEec------CCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCCCeeEEEEec-----------
Q 004885          622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKC-----------  681 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~------h~~~V~sl~fsP~g~~llaSgs---~Dg~I~IwDl~t~~~v~~~~~-----------  681 (725)
                      .+||+.++. .+..+..      +...+..+++++++..++++..   .++.|.+||+.+++..+.+..           
T Consensus        96 ~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999876 4454432      2235689999987666777766   678999999998876654421           


Q ss_pred             -------------------CCCeEEEEEecCCCEEEEEEcCC-eEEEEE
Q 004885          682 -------------------QSGATQMRFQPRLGRILAAAIEN-YISILD  710 (725)
Q Consensus       682 -------------------~~~V~sv~fspdg~~Lla~s~Dg-~V~IwD  710 (725)
                                         ...+..|+|+|+++.|+++..++ .|..++
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence                               02368899999999888887765 565555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=3.4e-06  Score=99.01  Aligned_cols=165  Identities=10%  Similarity=0.030  Sum_probs=121.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCC
Q 004885          558 VESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL  609 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg-------------------~V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~  609 (725)
                      ...+++++++.+|+.+..++                   +|..+|.++++.+..+..  |.       .....+....++
T Consensus       245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            34678899888888887664                   599999999999887753  21       122233333466


Q ss_pred             ---CEEEEEeCCCeEEEEECCCCCeeeEEEecCC-----------CCe------------------------EEEEEccC
Q 004885          610 ---SRLATSSADRTVRVWDTENPDYSLRTFTGHS-----------TTV------------------------MSLDFHPS  651 (725)
Q Consensus       610 ---~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-----------~~V------------------------~sl~fsP~  651 (725)
                         ..|++++.+|.|.++|..+++ .+..+....           ..+                        ..++|+|+
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~  403 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ  403 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence               678999999999999999988 443332110           001                        14688998


Q ss_pred             CCeEEEEEeC------------------------------------------CCcEEEEECCCCeeEEEEecCCCeEEEE
Q 004885          652 KEDLLCSCDN------------------------------------------NSEIRYWSINNGSCAGVFKCQSGATQMR  689 (725)
Q Consensus       652 g~~llaSgs~------------------------------------------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~  689 (725)
                      +..+++....                                          .+.|..||+.+++.+..++....+....
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~  483 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT  483 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc
Confidence            8755543321                                          2789999999999999888766666666


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      +..+++.+++++.|+.|++||+++|+++.++.-.
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            7778889999988999999999999999998743

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.58  E-value=1.3e-06  Score=99.68  Aligned_cols=165  Identities=11%  Similarity=0.076  Sum_probs=124.9

Q ss_pred             CCeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 004885          556 SKVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS  615 (725)
Q Consensus       556 ~~V~~i~f-S-pdg~~LaSgs------------------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg  615 (725)
                      ..+..+++ + |+++++++++                  +++.|.++|.++.+.+..+.--. ....++++|++++++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            45788888 5 8999998885                  34689999999998888776322 45678899999999988


Q ss_pred             eCCC--------------------------------------eEEEEECCC--CCeeeEEEecCCCCeEEEEEccCCCeE
Q 004885          616 SADR--------------------------------------TVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (725)
Q Consensus       616 s~Dg--------------------------------------tIrvWDl~~--~~~~l~~~~~h~~~V~sl~fsP~g~~l  655 (725)
                      +.+.                                      .|.|.|..+  +...+..+.. .....++.++|||+++
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL  291 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence            8653                                      467777776  3311333332 2346789999999999


Q ss_pred             EEEEeCCCcEEEEECCCCe------------eEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC---------
Q 004885          656 LCSCDNNSEIRYWSINNGS------------CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET---------  713 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t~~------------~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t---------  713 (725)
                      ++++-.+.+|.++|+.+.+            .+.......+...++|+|+| ++++... |+.|.+||+.+         
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            9888889999999999653            44555557789999999998 6665554 89999999987         


Q ss_pred             -CeEEEEEeCC
Q 004885          714 -QVCRLKLQVS  723 (725)
Q Consensus       714 -g~~v~~l~GH  723 (725)
                       .+.+.++.-|
T Consensus       371 ~~~vi~kidV~  381 (595)
T 1fwx_A          371 VDPIKDKLDVH  381 (595)
T ss_dssp             CCCEEEEEECS
T ss_pred             cceeEEEeecc
Confidence             6788887765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.52  E-value=9.9e-06  Score=84.03  Aligned_cols=170  Identities=8%  Similarity=0.049  Sum_probs=119.1

Q ss_pred             ceeeeEEEecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEe-
Q 004885          543 FTFTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-  616 (725)
Q Consensus       543 ~~~~~~~~l~~H~~--~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs-  616 (725)
                      .+++.+.++. |..  ....+.|++++.++++.+.  ++.|+++|+.+++.+..+.-.. .....++++  +..|+.+. 
T Consensus         7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A            7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred             cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence            3455666663 443  3579999998755555443  5799999999999888764222 223355555  45665555 


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEE
Q 004885          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF  690 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~f  690 (725)
                      .++.+.++|..+.+ .+..+..-...  ...+++++..++++. .++.|+++|..+.+.+..+...      ..++.+.|
T Consensus        84 ~~~~v~viD~~t~~-v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           84 LKNIGFIYDRRTLS-NIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             TCSEEEEEETTTTE-EEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             cCCEEEEEECCCCc-EEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            57899999999877 56666422111  233556788777654 6889999999999988888752      13678888


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          691 QPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       691 spdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      . ++ .+++... ++.|.+.|..+++++..+.
T Consensus       160 ~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          160 I-NG-EVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             E-TT-EEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             E-CC-EEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            8 54 5666654 7899999999999999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.51  E-value=8.3e-06  Score=90.24  Aligned_cols=144  Identities=13%  Similarity=0.158  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEeccC--CCCeEEEEE--cCCCCEEEE
Q 004885          558 VESCHFSPDGKLLATGG-------------------HDKKAVLWCTESFTVKSTLEEH--TQWITDVRF--SPSLSRLAT  614 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs-------------------~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~Iaf--sPd~~~Las  614 (725)
                      -+.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..-  ......|+|  +|+++++++
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV  269 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI  269 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence            45688999999888874                   4689999999998888777542  133456666  999998877


Q ss_pred             Ee------CCCeEEEEECCCCCeee-EEE--ec----------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885          615 SS------ADRTVRVWDTENPDYSL-RTF--TG----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       615 gs------~DgtIrvWDl~~~~~~l-~~~--~~----------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD  669 (725)
                      ++      .+++|.+|..+.+.... ..+  ..                ....+..|.++|+|+.+++++-..+.|.+||
T Consensus       270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            76      56688877765432111 111  10                0245788999999999999988899999999


Q ss_pred             CCC---CeeEEEEecCC---------------CeEEEEEecCCCEEEEEE
Q 004885          670 INN---GSCAGVFKCQS---------------GATQMRFQPRLGRILAAA  701 (725)
Q Consensus       670 l~t---~~~v~~~~~~~---------------~V~sv~fspdg~~Lla~s  701 (725)
                      +..   .+.+..+...+               ....+.++|||++|+++.
T Consensus       350 V~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          350 ISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            863   35555555431               368899999999999998

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.49  E-value=3.2e-05  Score=80.22  Aligned_cols=148  Identities=7%  Similarity=0.031  Sum_probs=107.5

Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          560 SCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       560 ~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      .+++.  ++.|+ +.-.++.|.++|..+.+.+.++..-..  ..+.+++|+.+|+++..+++|.++|..+.+ .+..+.-
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~V  144 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNV  144 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEEC
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEE
Confidence            45554  44454 444578999999999999988853211  123355678878887788999999999877 4444431


Q ss_pred             C-----CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEE
Q 004885          639 H-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILA  699 (725)
Q Consensus       639 h-----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla  699 (725)
                      .     -..++.+.|. ++ .+++....++.|.+.|..+++.+..+...              .....|+|+|+++.+++
T Consensus       145 g~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             EETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred             CCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence            1     1246788888 65 57777767889999999999999988752              24689999999987777


Q ss_pred             EEc-CCeEEEEECCCC
Q 004885          700 AAI-ENYISILDVETQ  714 (725)
Q Consensus       700 ~s~-Dg~V~IwDl~tg  714 (725)
                      ++. .+.|.+.++...
T Consensus       223 Tgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          223 TGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTCSEEEEEEEEEC
T ss_pred             ECCCCCeEEEEEEecc
Confidence            665 688888887643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.43  E-value=1e-05  Score=83.36  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=118.1

Q ss_pred             ceeeeEEEecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-C
Q 004885          543 FTFTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-A  617 (725)
Q Consensus       543 ~~~~~~~~l~~H~~~--V~~i~fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~  617 (725)
                      ..++.+.++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.-.. .+....+.++++.|+... .
T Consensus        29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS
T ss_pred             cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEee
Confidence            344556666 44433  4788998 677777777766  99999999999888775432 333322333455666655 4


Q ss_pred             CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEEe
Q 004885          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQ  691 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~fs  691 (725)
                      ++.+.+||..+.+ .+.++..... -+.++  +++..++++- .++.|.++|..+.+.+..+...      ..++.+.|.
T Consensus       106 ~~~v~v~D~~t~~-~~~ti~~~~e-G~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          106 NGLGFVWNIRNLR-QVRSFNYDGE-GWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SSEEEEEETTTCC-EEEEEECSSC-CCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECccCc-EEEEEECCCC-ceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            8899999999988 6777764322 23344  5667666554 4778999999999998887751      234567876


Q ss_pred             cCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC
Q 004885          692 PRLGRILAAAI-ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       692 pdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~G  722 (725)
                       +| .|++... ++.|.+.|.++|+++..+.-
T Consensus       181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             -TT-EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             -CC-EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence             54 5666664 78999999999999998864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.39  E-value=6.5e-05  Score=76.65  Aligned_cols=160  Identities=8%  Similarity=-0.030  Sum_probs=109.6

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeE
Q 004885          557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl~~~~~~l~  634 (725)
                      .+.+++|++++..|+.+ ..++.|.+++.+.......+.........|++++++..|+.+. ..+.|.+++++... ...
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~  115 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRV  115 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEE
Confidence            37899999976655544 4578999999976654444433335688999999766665554 56799999997543 222


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCCeeEEEEe-c-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                      ...........++++|++..++++...  .+.|..++++... ...+. . -.....++|++++++|+++.. .+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            222222467899999987767766544  4689889887433 33332 2 345889999998888777765 5899999


Q ss_pred             ECCCCeEEE
Q 004885          710 DVETQVCRL  718 (725)
Q Consensus       710 Dl~tg~~v~  718 (725)
                      |+.......
T Consensus       195 ~~~g~~~~~  203 (267)
T 1npe_A          195 NPAQPGRRK  203 (267)
T ss_dssp             ETTEEEEEE
T ss_pred             ecCCCceEE
Confidence            998654433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.37  E-value=5.6e-06  Score=91.69  Aligned_cols=146  Identities=10%  Similarity=0.024  Sum_probs=104.5

Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 004885          565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP  629 (725)
Q Consensus       565 pdg~~LaSgs~D-----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvWDl~~~  629 (725)
                      +++++++++...     +.|.++|..+.+.+..+..-..+  .|+++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            467766666543     69999999999999888754555  899999999988876          3678999999998


Q ss_pred             CeeeEEEecC-------CCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeEEEEEecCC-CEEEEE
Q 004885          630 DYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA  700 (725)
Q Consensus       630 ~~~l~~~~~h-------~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg-~~Lla~  700 (725)
                      + .+..+.--       ......+.|+|+|++++++... ++.|.++|+.+++.+..+...+.   ....|++ ..+++.
T Consensus       160 ~-vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 L-PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN  235 (426)
T ss_dssp             C-EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred             c-EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence            7 55555321       1234678999999988776543 67899999999999988875332   2233332 344555


Q ss_pred             EcCCeEEEEECCCCeE
Q 004885          701 AIENYISILDVETQVC  716 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~  716 (725)
                      +.||.+.+.++.+++.
T Consensus       236 ~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          236 CRDGSLARVDFADGET  251 (426)
T ss_dssp             ETTSSEEEEECCTTCC
T ss_pred             cCCCCEEEEECCCCcE
Confidence            5666666666655543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.36  E-value=0.00011  Score=77.27  Aligned_cols=160  Identities=8%  Similarity=-0.002  Sum_probs=104.3

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 004885          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSP-SLSRLATSSA------------  617 (725)
Q Consensus       557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-----H~~~V~~IafsP-d~~~Lasgs~------------  617 (725)
                      .+.++++.+ +++ |+++...+.|.++|..++.. ..+..     ......++++.+ ++.++++...            
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            478899997 554 55555556688888765432 22211     123578899999 8887666432            


Q ss_pred             -----CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe--eEEEE-ecCCCeEEEE
Q 004885          618 -----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF-KCQSGATQMR  689 (725)
Q Consensus       618 -----DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~--~v~~~-~~~~~V~sv~  689 (725)
                           ++.|..||..++.  +..+.........|+|+|+++.++++-..++.|.+|++....  ....+ ...+ ...|+
T Consensus       159 ~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             HHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             cccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence                 3678888887654  222222223456799999998777776777899999987521  11122 2223 88899


Q ss_pred             EecCCCEEEEEEc----------CCeEEEEECCCCeEEEEEeC
Q 004885          690 FQPRLGRILAAAI----------ENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       690 fspdg~~Lla~s~----------Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ++++|..+++...          .+.|.++|.. ++.+..+..
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~  277 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL  277 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC
Confidence            9999886666544          4678888874 777776653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.35  E-value=9.7e-06  Score=83.66  Aligned_cols=152  Identities=14%  Similarity=0.091  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCe--EEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeE
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V--~~IafsPd~~~Las-gs~DgtIrvWDl~~~~~~l~  634 (725)
                      ...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -. ...  ..+++.  ++.|+. .-.++.+.+||..+.+ .+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~-~~~  130 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ-RER  130 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE-EEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc-EEE
Confidence            4688887 4667778888899999999999887776 22 223  335554  344444 4458899999999987 677


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEEecCCCEEEEEEc-CCeEE
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAAI-ENYIS  707 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~fspdg~~Lla~s~-Dg~V~  707 (725)
                      ++..... -+.++  +++..++++ +.++.|+++|..+.+.+..+...      ..++.+.|. +| .|++... ++.|.
T Consensus       131 ti~~~~e-GwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~  204 (268)
T 3nok_A          131 TTRYSGE-GWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVL  204 (268)
T ss_dssp             EEECSSC-CCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEE
T ss_pred             EEeCCCc-eeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEE
Confidence            7764322 24444  456766655 45889999999999998888751      245677877 54 5666664 78999


Q ss_pred             EEECCCCeEEEEEe
Q 004885          708 ILDVETQVCRLKLQ  721 (725)
Q Consensus       708 IwDl~tg~~v~~l~  721 (725)
                      +.|.++|+++..+.
T Consensus       205 vIDp~TG~V~~~Id  218 (268)
T 3nok_A          205 EIDPATGTVVGVID  218 (268)
T ss_dssp             EECTTTCBEEEEEE
T ss_pred             EEeCCCCcEEEEEE
Confidence            99999999999886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.33  E-value=4e-05  Score=78.23  Aligned_cols=168  Identities=14%  Similarity=0.125  Sum_probs=116.5

Q ss_pred             ceeeeEEEecCCCCC--eEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEe-
Q 004885          543 FTFTEFQLIPASTSK--VESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-  616 (725)
Q Consensus       543 ~~~~~~~~l~~H~~~--V~~i~fSpdg~~LaSgs~D--g~V~IWdl~~~~~i~~l~~H~~~-V~~IafsPd~~~Lasgs-  616 (725)
                      ..++.+..+ .|...  .-.+.|+. +.++.+.+.+  ..|+++|+.+++.+..+.-.... -..+++.  +..|+... 
T Consensus         7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw   82 (243)
T 3mbr_X            7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTW   82 (243)
T ss_dssp             CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES
T ss_pred             cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEe
Confidence            344556666 45443  55899985 5566666665  48999999999998877533221 1234443  45555544 


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEE
Q 004885          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF  690 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~f  690 (725)
                      .++.+.+||..+.+ .+.++..... -+.|+  +++..++++- .++.|+++|..+.+.+..+...      ..++.+.|
T Consensus        83 ~~~~v~v~D~~tl~-~~~ti~~~~~-Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           83 RNHEGFVYDLATLT-PRARFRYPGE-GWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             SSSEEEEEETTTTE-EEEEEECSSC-CCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             eCCEEEEEECCcCc-EEEEEeCCCC-ceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            58899999999987 6777764332 24444  5666677654 5789999999999998888752      34667777


Q ss_pred             ecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe
Q 004885          691 QPRLGRILAAA-IENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       691 spdg~~Lla~s-~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      . + +.|++.. .++.|.+.|.++|+++..+.
T Consensus       158 ~-~-G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          158 V-N-GELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             E-T-TEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             e-C-CEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            6 4 4566665 47899999999999999886

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.29  E-value=2.6e-05  Score=81.17  Aligned_cols=156  Identities=10%  Similarity=0.035  Sum_probs=108.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      +...+.++.+.+++. |..++.++.|..||.. ++.+..+......+.++.+.+++.+++. +  +.|..|| .++. .+
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~-~~  207 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGT-EK  207 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSC-EE
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCc-EE
Confidence            344566777777776 5567778999999998 7777777655667778888777775544 4  7899999 5555 44


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ..+......+.++.++++|. ++ .++.++.|..+|. ++..+..+... ..+.++.+.++ +.|++++.++.|..||. 
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             EEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred             EEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence            45544456688888888876 44 4555778888884 56666666543 33445666655 56777888889999996 


Q ss_pred             CCeEEEEEe
Q 004885          713 TQVCRLKLQ  721 (725)
Q Consensus       713 tg~~v~~l~  721 (725)
                      +++.+..+.
T Consensus       283 ~g~~~~~~~  291 (330)
T 3hxj_A          283 DGTEKWNFE  291 (330)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            677766654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.27  E-value=9.3e-05  Score=76.24  Aligned_cols=131  Identities=11%  Similarity=0.151  Sum_probs=95.5

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecC--C--
Q 004885          566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--S--  640 (725)
Q Consensus       566 dg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h--~--  640 (725)
                      +++.|... -.++.+.+||..+.+.+.++..-.   ....+++++..|+.+..+.+|.++|..+.. .+..+.-.  .  
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~  170 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEE  170 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEE
T ss_pred             eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCcc
Confidence            45555544 458899999999999998886422   223344567778777778889999999877 45544321  1  


Q ss_pred             -CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------CCeEEEEEecCCCEEEEEEc
Q 004885          641 -TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------SGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       641 -~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~-------------~~V~sv~fspdg~~Lla~s~  702 (725)
                       ..++.+.|. +| .+++..-.+..|.+.|..+++.+..+...             ...+.|+|+|+++.|++++.
T Consensus       171 ~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          171 LPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             345567776 55 47777767889999999999999988752             23588999999888888776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.23  E-value=1.1e-05  Score=87.73  Aligned_cols=89  Identities=3%  Similarity=-0.032  Sum_probs=70.8

Q ss_pred             EEEcCCCCEEEEEeC---------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCC
Q 004885          603 VRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN  672 (725)
Q Consensus       603 IafsPd~~~Lasgs~---------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t  672 (725)
                      ++|+|++++++++..         +..+.++|+.+.+ .+..+.... ....|+|+|+|+.+++++. .++.|.++|+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-EEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            678999888887543         2356699999987 455554332 5889999999998888888 699999999999


Q ss_pred             CeeEEEEecCCCeEEEEEecC
Q 004885          673 GSCAGVFKCQSGATQMRFQPR  693 (725)
Q Consensus       673 ~~~v~~~~~~~~V~sv~fspd  693 (725)
                      ++.+..+........+++.+.
T Consensus       347 ~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          347 DQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             CEEEEECCCCSCCCEEECCCC
T ss_pred             CcEEEEEECCCCCCEEEeecC
Confidence            999999987777778877653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.20  E-value=0.00013  Score=78.16  Aligned_cols=147  Identities=11%  Similarity=0.030  Sum_probs=94.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCe--
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  643 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V--  643 (725)
                      ++..|++++.++.|+.+|..+++.+..+...........+.  +..+++++.++.|..+|..+++ .+-.+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCC-EEEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceee
Confidence            45678888899999999999999887775443222222222  4578888899999999999887 344333221110  


Q ss_pred             ---EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-EEEEEecCCCEEEEEEcCCeEEE
Q 004885          644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       644 ---~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~-----------V-~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                         ...... + . .++.+..++.|..+|..+++.+..+.....           + ....+  .++.+++++.++.|..
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence               122222 2 3 345677789999999999998877764211           1 11111  2356677777778888


Q ss_pred             EECCCCeEEEEE
Q 004885          709 LDVETQVCRLKL  720 (725)
Q Consensus       709 wDl~tg~~v~~l  720 (725)
                      +|.++|+.+...
T Consensus       254 ~d~~tG~~~w~~  265 (376)
T 3q7m_A          254 LDLRSGQIMWKR  265 (376)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCcEEeec
Confidence            888887766544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.19  E-value=7.2e-05  Score=87.93  Aligned_cols=148  Identities=9%  Similarity=0.067  Sum_probs=102.7

Q ss_pred             CCCcEEEEECCCCeEEEEeccCC-------------------------------CCeEEEEEcCCCCEEEEEeCCCe---
Q 004885          575 HDKKAVLWCTESFTVKSTLEEHT-------------------------------QWITDVRFSPSLSRLATSSADRT---  620 (725)
Q Consensus       575 ~Dg~V~IWdl~~~~~i~~l~~H~-------------------------------~~V~~IafsPd~~~Lasgs~Dgt---  620 (725)
                      .|+.|+.||.++++.+..+....                               .....++++|+..+|+.+..++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            37899999999999988764210                               11125788998889999887764   


Q ss_pred             ----------------EEEEECCCCCeeeEEEec--CC-------CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCCC
Q 004885          621 ----------------VRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG  673 (725)
Q Consensus       621 ----------------IrvWDl~~~~~~l~~~~~--h~-------~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t~  673 (725)
                                      |..||.++++ .+-.+..  |.       ..+.......+|.  .+++.++.+|.|+++|.++|
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                            9999999998 4444432  21       1222223223443  36778889999999999999


Q ss_pred             eeEEEEecCC----------------------------------------CeEEEEEecCCCEEEEEEc-----------
Q 004885          674 SCAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAI-----------  702 (725)
Q Consensus       674 ~~v~~~~~~~----------------------------------------~V~sv~fspdg~~Lla~s~-----------  702 (725)
                      +.+...+...                                        ....++|+|+.+.+++...           
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence            9885443211                                        0123788998888777532           


Q ss_pred             ----------------------------------CCeEEEEECCCCeEEEEEeCC
Q 004885          703 ----------------------------------ENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       703 ----------------------------------Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                                                        ++.|..||+.||+.+-+++.+
T Consensus       420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~  474 (689)
T 1yiq_A          420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV  474 (689)
T ss_dssp             CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred             cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence                                              377999999999998887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=3.3e-05  Score=90.46  Aligned_cols=165  Identities=10%  Similarity=0.054  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCeEEEEEcCCC
Q 004885          558 VESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL  609 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg-------------------~V~IWdl~~~~~i~~l~~--H~-------~~V~~IafsPd~  609 (725)
                      ...+++.++..+++.++.++                   .|..+|.++++.+..+..  |.       .++....+..++
T Consensus       232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            34578888888888887766                   399999999999888754  22       223333333355


Q ss_pred             C---EEEEEeCCCeEEEEECCCCCeeeEEEecCC------------CC------------------------eEEEEEcc
Q 004885          610 S---RLATSSADRTVRVWDTENPDYSLRTFTGHS------------TT------------------------VMSLDFHP  650 (725)
Q Consensus       610 ~---~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~------------~~------------------------V~sl~fsP  650 (725)
                      +   .|+.++.+|.+.++|..+++ .+..+....            .+                        -..++|+|
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp  390 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGK-LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP  390 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             cEEEEEEEECCCCEEEEEECCCCC-EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence            4   68889999999999999988 342221110            00                        01267788


Q ss_pred             CCCeEEEEE-----------------------------------eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          651 SKEDLLCSC-----------------------------------DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       651 ~g~~llaSg-----------------------------------s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      +...+++..                                   ..+|.|..||+.+++.+..++....+....+...++
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg  470 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN  470 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCC
Confidence            766555421                                   123789999999999998887655555555566778


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      .+++++.|+.|++||.++|+.+.+++..
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEECCcccchhhhhhcChhheEecCC
Confidence            9999989999999999999999888643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=6e-05  Score=88.41  Aligned_cols=145  Identities=11%  Similarity=0.094  Sum_probs=104.1

Q ss_pred             CCcEEEEECCCCeEEEEeccCCCC--------------------------------eEEEEEcCCCCEEEEEeCCC----
Q 004885          576 DKKAVLWCTESFTVKSTLEEHTQW--------------------------------ITDVRFSPSLSRLATSSADR----  619 (725)
Q Consensus       576 Dg~V~IWdl~~~~~i~~l~~H~~~--------------------------------V~~IafsPd~~~Lasgs~Dg----  619 (725)
                      ++.|+.||..+++.+..+......                                ...++++|++.+|+.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            799999999999998877532211                                13578899888998887664    


Q ss_pred             ---------------eEEEEECCCCCeeeEEEec--CC-------CCeEEEEEccCCC--eEEEEEeCCCcEEEEECCCC
Q 004885          620 ---------------TVRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG  673 (725)
Q Consensus       620 ---------------tIrvWDl~~~~~~l~~~~~--h~-------~~V~sl~fsP~g~--~llaSgs~Dg~I~IwDl~t~  673 (725)
                                     +|..+|.++++ .+-.+..  |.       .....+....+|+  .+++.++.+|.|+++|.++|
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                           59999999988 3433332  21       1223334444663  47778899999999999999


Q ss_pred             eeEEEEecCC-----------C-------------------------eEEEEEecCCCEEEEEEcC--------------
Q 004885          674 SCAGVFKCQS-----------G-------------------------ATQMRFQPRLGRILAAAIE--------------  703 (725)
Q Consensus       674 ~~v~~~~~~~-----------~-------------------------V~sv~fspdg~~Lla~s~D--------------  703 (725)
                      +.+..++...           .                         ...++|+|+++.+++...+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            9987776311           0                         0257889998888776432              


Q ss_pred             -----------------------------CeEEEEECCCCeEEEEEe
Q 004885          704 -----------------------------NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       704 -----------------------------g~V~IwDl~tg~~v~~l~  721 (725)
                                                   +.|..||+.+++.+-+++
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~  474 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE  474 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence                                         789999999999887775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0025  Score=67.13  Aligned_cols=162  Identities=9%  Similarity=-0.025  Sum_probs=108.6

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--gtIrvWDl~~~~~~  632 (725)
                      .....+++.+.+..| ++-...+.|.+++.+.......+.........|+++|.+.+|+.+...  +.|..++++...  
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--
Confidence            346789998755544 555667899999987654433343334567899999976766666543  688888886543  


Q ss_pred             eEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEE-cCCeEE
Q 004885          633 LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IENYIS  707 (725)
Q Consensus       633 l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s-~Dg~V~  707 (725)
                      ...+ ...-.....|+|++++..++++-...+.|..+|+...........   -.....|++..  +.|+.+. ..+.|.
T Consensus       155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~  232 (316)
T 1ijq_A          155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF  232 (316)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred             eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEE
Confidence            2322 223456789999998887887777778999999985333222222   23467888853  4555554 468899


Q ss_pred             EEECCCCeEEEEEe
Q 004885          708 ILDVETQVCRLKLQ  721 (725)
Q Consensus       708 IwDl~tg~~v~~l~  721 (725)
                      .+|..+|+.+..+.
T Consensus       233 ~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          233 SANRLTGSDVNLLA  246 (316)
T ss_dssp             EEETTTCCCCEEEE
T ss_pred             EEeCCCCcceEEEe
Confidence            99988887665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.08  E-value=0.00018  Score=74.26  Aligned_cols=171  Identities=9%  Similarity=0.051  Sum_probs=114.8

Q ss_pred             CcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004885          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (725)
Q Consensus       506 ~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~  585 (725)
                      +.+.++.+.++.|++++...+.                ....+  +... .....+++.. +++.++.-.++.+.+||..
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgk----------------v~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQ----------------PVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSS----------------CSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEEECCCCc----------------EEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence            3567777788888888544332                11111  2221 1112355532 3444445568899999999


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec--CC---CCeEEEEEccCCCeEEEEEe
Q 004885          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HS---TTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       586 ~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~--h~---~~V~sl~fsP~g~~llaSgs  660 (725)
                      +.+.+.++..-.. -..++  +++..|+.+..+++|.++|..+.+ .+..+.-  +.   ..++.+.|. +| .+++..-
T Consensus       125 Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw  198 (268)
T 3nok_A          125 PPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NG-VIYANIW  198 (268)
T ss_dssp             TTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             cCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CC-EEEEEEC
Confidence            9999988874322 23343  567888888889999999999877 4554432  11   245677877 55 4777766


Q ss_pred             CCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEEEEc
Q 004885          661 NNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla~s~  702 (725)
                      .+..|.+.|..+++.+..+...              .-.+.|+|+|+++.|++++.
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6789999999999999888742              24688999998887777765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.08  E-value=3.6e-05  Score=87.82  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=110.5

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCeEEEEecc-CCCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 004885          566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRF-S-PSLSRLATSS------------------ADRTVRV  623 (725)
Q Consensus       566 dg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~-H~~~V~~Iaf-s-Pd~~~Lasgs------------------~DgtIrv  623 (725)
                      ||++|+++.. +..|.+.|+++.++..++.- ....+..+++ + |++.++++++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888777665 55799999999998885542 2356888888 5 8999998884                  2458999


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-------------------------------------CcEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR  666 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-------------------------------------g~I~  666 (725)
                      +|.++.+ .+..+.--. ....++++|+|+++++++...                                     +.|.
T Consensus       180 ID~~t~~-v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWE-VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTE-EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCe-EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999876 444443211 346678999999887777432                                     2488


Q ss_pred             EEECCC--Cee-EEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885          667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       667 IwDl~t--~~~-v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      |.|.++  ++. +..+.......++.++|||+++++++. +++|.|+|+.+.
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            888887  555 666666667889999999999888876 789999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.08  E-value=0.00024  Score=74.63  Aligned_cols=153  Identities=9%  Similarity=0.021  Sum_probs=105.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------------------CCCCeEEEEEcCCCCEEEEEe
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------------------HTQWITDVRFSPSLSRLATSS  616 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--------------------H~~~V~~IafsPd~~~Lasgs  616 (725)
                      ...+++|++++++++++..++.|..||..++... .+..                    ....+..|+++++...|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4567899999987888888999999998765433 2211                    013578999998444566666


Q ss_pred             CCCeEEEEECCCCCeeeEEEec-----CCCCeEEEEEcc-CCCeEEEEEeC-----------------CCcEEEEECCCC
Q 004885          617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG  673 (725)
Q Consensus       617 ~DgtIrvWDl~~~~~~l~~~~~-----h~~~V~sl~fsP-~g~~llaSgs~-----------------Dg~I~IwDl~t~  673 (725)
                      ..+.|.++|..++.  +..+..     .......+++.+ +|. ++++...                 ++.|..||..++
T Consensus        99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            66668888877543  222221     113478899999 886 5555432                 367999998877


Q ss_pred             eeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          674 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       674 ~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                      ........-.....|+|++++..|+++.. .+.|.+|++..
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            65544433345678999999987776644 68999999875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.07  E-value=0.00013  Score=78.00  Aligned_cols=148  Identities=7%  Similarity=0.005  Sum_probs=101.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---------CCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---------QWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~---------~~V~-~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ++..|++++.++.|+.||..+++.+..+....         ..+. .+..  ++..+++++.++.|..+|..+++ .+-.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~-~~W~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGT-VAWQ  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCC-EEEE
Confidence            35678888889999999999999887765421         2222 2222  45688889999999999999988 3433


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe------EEEEEecCCCEEEEEEcCCeEEEE
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISIL  709 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V------~sv~fspdg~~Lla~s~Dg~V~Iw  709 (725)
                      +............. + . .++.++.++.|..+|.++++.+..+.....+      ......  ++.++++..++.|..+
T Consensus       129 ~~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          129 TKVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             EECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             EeCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            33322211122222 2 3 4556777899999999999999888754333      222333  3578888889999999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      |.++|+.+-.+.
T Consensus       204 d~~tG~~~w~~~  215 (376)
T 3q7m_A          204 LMEQGQMIWQQR  215 (376)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEEEEEe
Confidence            999998887665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.07  E-value=0.0001  Score=76.52  Aligned_cols=150  Identities=10%  Similarity=-0.032  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l  633 (725)
                      ....+.++.+.+++.+++.+   +.|..|| .+++.+..+......+.++.+.+++. |+.++.++.|..+|. ++. .+
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~-~~  247 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGT-EK  247 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSC-EE
T ss_pred             CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCC-Ee
Confidence            34557778887778755444   7899999 77777777766667788888888765 555667788888875 334 34


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      ..+......+.++.+.+++. ++ .++.++.|..+|. +++.+..+.. ...+.++...+++ .|++++.+|.|++...+
T Consensus       248 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g-~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          248 WRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG-TIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             EEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC-CEEEECTTSCEEEEEC-
T ss_pred             EEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC-EEEEEcCCCeEEEEecc
Confidence            44544444445566666665 44 5666888999996 6777777665 4456777777774 57778899999998876


Q ss_pred             CC
Q 004885          713 TQ  714 (725)
Q Consensus       713 tg  714 (725)
                      ..
T Consensus       324 ~~  325 (330)
T 3hxj_A          324 EH  325 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.04  E-value=0.00074  Score=70.46  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-C-cEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLLATGGHD-K-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~D-g-~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ..+.++++.++++++++.... + .|..+|..+++...... ........+++.+++..+++...++.|.++|..++...
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            358899999999966655432 2 47777777766543322 12233455665555544444445888989998754211


Q ss_pred             eEEEe---------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCCeEEEEEecCCCEEEEE
Q 004885          633 LRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       633 l~~~~---------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~--v~~~~~~~~V~sv~fspdg~~Lla~  700 (725)
                      +....         ........|  +|+++.++++-...+.|.+||+.. +..  ...+........|+++++|..+++.
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence            21111         111234555  788888888887888999999874 322  1222222456789999998766665


Q ss_pred             EcCCeEEEEECCCCeE
Q 004885          701 AIENYISILDVETQVC  716 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~  716 (725)
                      ...+.|.+||.. |+.
T Consensus       230 ~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          230 HIYNSVVRIAPD-RST  244 (306)
T ss_dssp             BTTCCEEEECTT-CCE
T ss_pred             CCCCeEEEECCC-CCE
Confidence            567889999975 554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.02  E-value=0.00039  Score=79.85  Aligned_cols=161  Identities=14%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEecc--CC--------CCeEEEEEcCCCC---
Q 004885          560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEE--HT--------QWITDVRFSPSLS---  610 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~D----------------g~V~IWdl~~~~~i~~l~~--H~--------~~V~~IafsPd~~---  610 (725)
                      .+++.++...|+.+..+                +.|..+|.++++.+..+..  |.        .++ -+....+++   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence            35666666666665532                3699999999999887753  21        222 122224663   


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeEEEecCC-------------CCe--------------------------EEEEEccC
Q 004885          611 RLATSSADRTVRVWDTENPDYSLRTFTGHS-------------TTV--------------------------MSLDFHPS  651 (725)
Q Consensus       611 ~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------------~~V--------------------------~sl~fsP~  651 (725)
                      .++.++.+|.+.++|..+++ .+..+....             .++                          ..++|+|+
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGN-LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEeCCCcEEEEEECCCCC-EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            57788889999999999987 343332110             011                          23578888


Q ss_pred             CCeEEEEEe------------------------------------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCC
Q 004885          652 KEDLLCSCD------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (725)
Q Consensus       652 g~~llaSgs------------------------------------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~  695 (725)
                      ...+++.+.                                    .++.|..||+.+++.+..+.....+....+...++
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg  476 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG  476 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence            775655432                                    35789999999999998887655444444444567


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .+++++.|+.|++||.++|+++.+++-
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            888888999999999999999988873

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.0014  Score=71.11  Aligned_cols=162  Identities=6%  Similarity=-0.077  Sum_probs=107.3

Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCeee
Q 004885          557 KVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSL  633 (725)
Q Consensus       557 ~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~l  633 (725)
                      ....+++.+.+.. +++-...+.|.+++++.......+.........|+++|.+.+|+.... + +.|..++++... ..
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~  238 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RR  238 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cE
Confidence            4567888875554 455555678989888765444344444466889999997766666554 4 678888887544 22


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE-cCCeEEEEEC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IENYISILDV  711 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s-~Dg~V~IwDl  711 (725)
                      ............|+|+|++..++++-...+.|..+|+........+.. ......|++. . +.|+.+. ..+.|..+|.
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEeeCCCCeEEEEEC
Confidence            233333445789999998887887777778899999875443333332 3457788883 3 3555554 4688999997


Q ss_pred             CCCeEEEEEe
Q 004885          712 ETQVCRLKLQ  721 (725)
Q Consensus       712 ~tg~~v~~l~  721 (725)
                      .+|+.+..+.
T Consensus       317 ~~G~~~~~i~  326 (386)
T 3v65_B          317 FTGKNQEIIR  326 (386)
T ss_dssp             TTCCSCEEEE
T ss_pred             CCCcceEEEc
Confidence            7776555554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.00  E-value=0.0013  Score=66.95  Aligned_cols=129  Identities=13%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC-----CC
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TT  642 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-----~~  642 (725)
                      ++....-.++.+.+||..+.+.+.++..-... ..+  ++++..|+++..+++|.++|..+.. .+..+.-..     ..
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCC
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCccccc
Confidence            34444456889999999999999988743322 344  4567777777778999999999877 455544211     34


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeEEEEEecCCCEEEEEEc
Q 004885          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       643 V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~--------------~~V~sv~fspdg~~Lla~s~  702 (725)
                      ++.+.|. +|. +++..-.+..|.+.|.++++.+..+...              .-.+.|+|+|+++.|++++.
T Consensus       152 lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          152 LNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            5677766 444 7766656779999999999999988731              23588999999888888775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.99  E-value=0.0023  Score=68.53  Aligned_cols=162  Identities=7%  Similarity=-0.042  Sum_probs=107.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~  632 (725)
                      .....+++.+.+. ++++-...+.|.+++++.......+...-.....|+++|.+..|+.... + +.|..++++...  
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--  193 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--  193 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence            3457889987555 4455556788999998765443344444456789999997666655543 4 788888887543  


Q ss_pred             eEEE-ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          633 LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       633 l~~~-~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                      ...+ .........|+|+|++..++++-...+.|..+|+........+.. ......|++. . +.|+.+.. .+.|..+
T Consensus       194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSINSA  271 (349)
T ss_dssp             CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEEEEE
T ss_pred             cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEecCCCCeEEEE
Confidence            2232 223345789999998887887777778999999875433333322 3457788884 3 45555544 6889999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      |..+|+.+..+.
T Consensus       272 ~~~~G~~~~~i~  283 (349)
T 3v64_C          272 NKFTGKNQEIIR  283 (349)
T ss_dssp             ETTTCCSCEEEE
T ss_pred             EccCCCccEEec
Confidence            977776555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.96  E-value=0.0026  Score=65.39  Aligned_cols=155  Identities=10%  Similarity=0.118  Sum_probs=105.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~---i~~l~------~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      .....|++.+++.++++.-.++.+.++++.....   +....      .....+..|+|+|.+..|+++.......||.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4477888888887777766778999998865432   22221      12445789999999877777765544455544


Q ss_pred             CC--CCeeeEEEe-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeEE
Q 004885          627 EN--PDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQ  687 (725)
Q Consensus       627 ~~--~~~~l~~~~-------~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~----------~V~s  687 (725)
                      +.  ....+..+.       .+...+.+|+|+|....+++.....+.|.++|.. ++.+..+....          ....
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence            31  110122221       1234578999999988899888888999999977 56766665422          4689


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECC
Q 004885          688 MRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       688 v~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      |+|.++|. |++++..+.+++|.-.
T Consensus       229 ia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          229 VAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             eEECCCCC-EEEEcCCceEEEEEec
Confidence            99999986 5556777878877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.91  E-value=0.0022  Score=68.72  Aligned_cols=158  Identities=9%  Similarity=0.006  Sum_probs=109.4

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l  633 (725)
                      ..+..++|++.+..|+.+ ...+.|+.++++.......+.........+++++.+..| ++-...+.|.+.+++... ..
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eE
Confidence            458899999866655544 467889999988765444444333456789999865555 454557899999998654 23


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD  710 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD  710 (725)
                      ..+.........|+++|.+..++++-..+ +.|..++++.......+.. -.....|+|+|+++.|+.+.. .+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            33333445678999999888788776666 7899999875333222222 345789999998888877765 57899999


Q ss_pred             CCCC
Q 004885          711 VETQ  714 (725)
Q Consensus       711 l~tg  714 (725)
                      +...
T Consensus       232 ~dG~  235 (349)
T 3v64_C          232 LDGS  235 (349)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.90  E-value=0.0072  Score=65.97  Aligned_cols=165  Identities=9%  Similarity=-0.036  Sum_probs=110.9

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCC
Q 004885          554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPD  630 (725)
Q Consensus       554 H~~~V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~  630 (725)
                      .......+++.+. ++++++-...+.|.+.+++.......+.........|+++|.+.+|+....  .+.|...+++...
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            3455788999874 445555556789999998766554444444456889999997666666653  3688888887544


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYI  706 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-Dg~V  706 (725)
                       ....+...-.....|++++++..|+++-...+.|..+|++.......+..   -.....|++.  ++.|+.+.. .+.|
T Consensus       237 -~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V  313 (400)
T 3p5b_L          237 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI  313 (400)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred             -cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence             22333333356799999998887887766778899999975444333332   2346677774  345555544 5789


Q ss_pred             EEEECCCCeEEEEEe
Q 004885          707 SILDVETQVCRLKLQ  721 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~  721 (725)
                      ..+|..+|+.+..+.
T Consensus       314 ~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          314 FSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEESSSCCCCEEEE
T ss_pred             EEEEcCCCCceEEEe
Confidence            999988886555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.89  E-value=0.0041  Score=65.39  Aligned_cols=158  Identities=13%  Similarity=0.008  Sum_probs=105.6

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q 004885          555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTEN  628 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~  628 (725)
                      ...+..++|++++..|+.+ ..++.|..++++.    ......+.........|++++.+..|+ +-..++.|.++|++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3457899999866655544 4568999999876    222223332334568899987655554 445678999999975


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe-c-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~-~-~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      .. ....+.........++++|.+..++++.... +.|..+++.. .....+. . -.....|+|+++++.|+.+.. .+
T Consensus       109 ~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          109 VK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             SS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             Cc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            44 2333333345678999999878777766544 7899998864 3333332 2 346789999998888887765 57


Q ss_pred             eEEEEECCCC
Q 004885          705 YISILDVETQ  714 (725)
Q Consensus       705 ~V~IwDl~tg  714 (725)
                      .|.++|+...
T Consensus       187 ~I~~~d~dg~  196 (316)
T 1ijq_A          187 SISSIDVNGG  196 (316)
T ss_dssp             EEEEEETTSC
T ss_pred             eEEEEecCCC
Confidence            8999999753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.88  E-value=0.0037  Score=64.22  Aligned_cols=171  Identities=10%  Similarity=0.056  Sum_probs=116.7

Q ss_pred             EEecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          549 QLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      +.+.+-...+..++|+|+++. +++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            566777778999999997664 4557778899999987 777777632 2356889999988877777667889999988


Q ss_pred             CCCCe--eeEEEe------cCCCCeEEEEEccCCCeEEEEEeCCC-cEEEEECC-CCeeEEEEec--------CCCeEEE
Q 004885          627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSIN-NGSCAGVFKC--------QSGATQM  688 (725)
Q Consensus       627 ~~~~~--~l~~~~------~h~~~V~sl~fsP~g~~llaSgs~Dg-~I~IwDl~-t~~~v~~~~~--------~~~V~sv  688 (725)
                      .....  .+....      ........|+|+|.+..+++++-.+. .|+.|+-. ....+..+..        -..+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            76552  122221      12344689999999987887766554 45556511 1112222211        2357899


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          689 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       689 ~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +++|..+.|++.+. ...|.++|.. |+.+..+.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~  211 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS  211 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence            99998887777766 5789999976 55555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.82  E-value=0.0019  Score=70.22  Aligned_cols=159  Identities=9%  Similarity=0.016  Sum_probs=109.7

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCee
Q 004885          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~~  632 (725)
                      ...+..++|++.+..|+ +-...+.|+.++++.......+.........|++++.+..|+ +-...+.|.+.+++... .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-C
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-e
Confidence            34588999998655555 445678899999887655444443334567889998655554 44557789998887554 2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                      ...+.........|+++|.+..++++-..+ +.|..+++........... -.....|+|+|+++.|+.+.. .+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            333333345679999999888787776655 7899999875433333322 345789999988888877765 5789999


Q ss_pred             ECCCC
Q 004885          710 DVETQ  714 (725)
Q Consensus       710 Dl~tg  714 (725)
                      |+...
T Consensus       274 d~dG~  278 (386)
T 3v65_B          274 NLDGS  278 (386)
T ss_dssp             CTTSC
T ss_pred             eCCCC
Confidence            98754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.82  E-value=0.0069  Score=64.00  Aligned_cols=163  Identities=8%  Similarity=-0.038  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~  632 (725)
                      .....+++.+.+. ++++-...+.|.+++++.......+.........|+++|.+.+|+.+..  .+.|...+++... .
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~  157 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R  157 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-e
Confidence            3466888887444 5555556789999998764433333344566789999997666666653  5788888887543 2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISILD  710 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD  710 (725)
                      .......-.....|+|+|++..++++-...+.|..+|++.......+. .......+++..  ..++.+. ..+.|..+|
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACN  235 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEE
Confidence            222222334578999999888788777777899999997543333333 234577888764  3444444 468899999


Q ss_pred             CCCCeEEEEEe
Q 004885          711 VETQVCRLKLQ  721 (725)
Q Consensus       711 l~tg~~v~~l~  721 (725)
                      ..+|+.+..+.
T Consensus       236 ~~~G~~~~~i~  246 (318)
T 3sov_A          236 KYTGEGLREIH  246 (318)
T ss_dssp             TTTCCSCEEEE
T ss_pred             CCCCCceEEEe
Confidence            98886555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0016  Score=69.26  Aligned_cols=162  Identities=9%  Similarity=0.132  Sum_probs=110.0

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----C--CCeEEEEE---cCCCCEEEEEe--
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----T--QWITDVRF---SPSLSRLATSS--  616 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~H-----~--~~V~~Iaf---sPd~~~Lasgs--  616 (725)
                      .++.....-.|++|.+....|..++ ..++|..||...+....+...+     .  ..+..|.|   .|+++++++..  
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3444455567899988555555555 7999999999765444332222     1  13689999   68877766544  


Q ss_pred             -----------CCCeEEEEECC---CCCeeeEEEe--c-----------CCCCeEEEEEccCCCeEEEEEeCC-CcEEEE
Q 004885          617 -----------ADRTVRVWDTE---NPDYSLRTFT--G-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYW  668 (725)
Q Consensus       617 -----------~DgtIrvWDl~---~~~~~l~~~~--~-----------h~~~V~sl~fsP~g~~llaSgs~D-g~I~Iw  668 (725)
                                 .+..|..||+.   +++ .+....  .           -...+..++..++|+ .+++++.. +.|..+
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV  164 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence                       26789999998   665 232222  1           113488999999998 66677777 778777


Q ss_pred             ECCCCeeEEEEec-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          669 SINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       669 Dl~t~~~v~~~~~-------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      +.... .+..+..       ....+.|+++|+|..|++...++.|..+|+.+.
T Consensus       165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            77643 3333221       223679999999999998877999999998753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.00072  Score=74.73  Aligned_cols=154  Identities=12%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCC
Q 004885          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD  630 (725)
Q Consensus       557 ~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-g----tIrvWDl~~~~  630 (725)
                      ....++|+| ++..|+++...+.|+++|+.......... .......|+|++++++|+++... +    .+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 45667666665889999998766544433 45668899999999977776642 1    34344433222


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc-CCeEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS  707 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~-Dg~V~  707 (725)
                      .....+.. ......++++|+...++++-..++.|+.||...+.....+..  ......|+|+|++.+|+++.. .+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11122222 234677889995455777766788999999987765333332  345789999999997666654 68899


Q ss_pred             EEECC
Q 004885          708 ILDVE  712 (725)
Q Consensus       708 IwDl~  712 (725)
                      +++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.79  E-value=0.00064  Score=79.53  Aligned_cols=153  Identities=13%  Similarity=0.107  Sum_probs=100.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CeEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCeeeEEEe
Q 004885          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~-~V~~IafsP--d~~~Lasgs~------DgtIrvWDl~~~~~~l~~~~  637 (725)
                      +..|++++.|+.|+.+|..+++.+..+..... ....+...|  .+..++++..      ++.|..||.++++ .+-.+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-EEEEec
Confidence            56788888999999999999999887754210 001111112  1345555543      5899999999988 444332


Q ss_pred             cC-------------------------------CCCeEEEEEccCCCeEEEEEeCCC-------------------cEEE
Q 004885          638 GH-------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIRY  667 (725)
Q Consensus       638 ~h-------------------------------~~~V~sl~fsP~g~~llaSgs~Dg-------------------~I~I  667 (725)
                      ..                               ......++++|+.. +++.+..++                   .|..
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            11                               01112468888877 444555554                   4999


Q ss_pred             EECCCCeeEEEEecC----------CCeEEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          668 WSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       668 wDl~t~~~v~~~~~~----------~~V~sv~fspdg~---~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +|.++|+.+..+...          ..+....+..+|+   .+++++.+|.|+++|.++|+.+..++
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence            999999999888752          1222333334654   57778889999999999999986554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.78  E-value=0.0016  Score=74.97  Aligned_cols=161  Identities=12%  Similarity=0.069  Sum_probs=108.6

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeEEEEecc--CC--------CCeEEEEE
Q 004885          560 SCHFSPDGKLLATGGH--------------------D----KKAVLWCTESFTVKSTLEE--HT--------QWITDVRF  605 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~--------------------D----g~V~IWdl~~~~~i~~l~~--H~--------~~V~~Iaf  605 (725)
                      .+++.|+..+|+.+..                    |    +.|..+|.++++.+..+..  |.        .++ -+..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEee
Confidence            4677777777776653                    2    5899999999999988743  32        122 1222


Q ss_pred             c-CCCC---EEEEEeCCCeEEEEECCCCCeeeEEEecCC-------------CC--------------------------
Q 004885          606 S-PSLS---RLATSSADRTVRVWDTENPDYSLRTFTGHS-------------TT--------------------------  642 (725)
Q Consensus       606 s-Pd~~---~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~-------------~~--------------------------  642 (725)
                      . .+++   .|+.++.+|.+.++|.++++ .+..+....             .+                          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCC-EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence            2 4564   68889999999999999987 343332211             00                          


Q ss_pred             ------eEEEEEccCCCeEEEEEe--------------------------------CCCcEEEEECCCCeeEEEEecCCC
Q 004885          643 ------VMSLDFHPSKEDLLCSCD--------------------------------NNSEIRYWSINNGSCAGVFKCQSG  684 (725)
Q Consensus       643 ------V~sl~fsP~g~~llaSgs--------------------------------~Dg~I~IwDl~t~~~v~~~~~~~~  684 (725)
                            -..++++|+...+++...                                .+|.|..||+.+++.+..++....
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~  487 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP  487 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence                  013466776554444321                                257899999999999888776444


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      +..-.....++.+++++.|+.|+.||.++|+.+-+++.
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            33322333467888899999999999999999988864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.77  E-value=0.00026  Score=84.00  Aligned_cols=153  Identities=8%  Similarity=0.053  Sum_probs=97.7

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 004885          557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV  623 (725)
Q Consensus       557 ~V~~i~fS-pdg~~LaSgs~-Dg----~V~IWdl~~~-~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrv  623 (725)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998875433 33    5999999988 6321 111   123468899999888776655     26888


Q ss_pred             EECCCCCee-eEEEe-cCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCCC--ee-EEEEe-c-CCCeEEEEEecCC
Q 004885          624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFK-C-QSGATQMRFQPRL  694 (725)
Q Consensus       624 WDl~~~~~~-l~~~~-~h~~~V~sl~fsP~g~~llaSgs~--Dg~I~IwDl~t~--~~-v~~~~-~-~~~V~sv~fspdg  694 (725)
                      +++.++... ...+. ........+.|+|+|++++++...  ...|+++|+.++  .. +..+. . .....++.|+. |
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            888776421 23332 233456789999999988776643  346888999875  23 12222 2 33455666554 5


Q ss_pred             CEEEEEEc-C----CeEEEEECCC
Q 004885          695 GRILAAAI-E----NYISILDVET  713 (725)
Q Consensus       695 ~~Lla~s~-D----g~V~IwDl~t  713 (725)
                      +.|+..+. +    ..|.++|+.+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCC
Confidence            66555544 3    3677888775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.77  E-value=0.0057  Score=66.79  Aligned_cols=161  Identities=12%  Similarity=0.016  Sum_probs=109.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLATG-GHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~  627 (725)
                      ....+..++|++.+..|+.+ ...+.|+.+++...    .....+.........|++++.+..|+ +-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34568899999866655554 45678999998652    23333443455678999998545554 44557899999998


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      ... ....+.........|+++|.+..++++-.. .+.|...++........+.. -.....|+|+++++.|+.+.. .+
T Consensus       190 g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          190 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            655 333333344568899999987777766533 37899999875443333332 356899999998888888765 57


Q ss_pred             eEEEEECCCCe
Q 004885          705 YISILDVETQV  715 (725)
Q Consensus       705 ~V~IwDl~tg~  715 (725)
                      .|..+|+....
T Consensus       269 ~I~~~d~dG~~  279 (400)
T 3p5b_L          269 SISSIDVNGGN  279 (400)
T ss_dssp             EEEEEETTSCC
T ss_pred             EEEEEeCCCCc
Confidence            89999987543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.72  E-value=0.0066  Score=63.16  Aligned_cols=161  Identities=11%  Similarity=0.058  Sum_probs=102.0

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR  622 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-g-tIr  622 (725)
                      .+.+..+... ....+++|+++++++++-..++.|..||.+.. ....+. ....+..|+++++++++++.... + .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            4455555433 56789999999997777768899999998753 333332 24568899999999866555432 2 466


Q ss_pred             EEECCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-------c---CCCeEEEE
Q 004885          623 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMR  689 (725)
Q Consensus       623 vWDl~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-v~~~~-------~---~~~V~sv~  689 (725)
                      .+|..++.  +..+.  ........+++.+. ..++++...++.|+++|..++.. +....       .   -.....| 
T Consensus        99 ~~d~~~g~--~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           99 SLVKSDGT--VETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEECTTSC--EEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EEcCCCCe--EEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            67777665  22222  12233455565554 34565555688999999876532 21111       0   1234555 


Q ss_pred             EecCCCEEEEEEc-CCeEEEEECCC
Q 004885          690 FQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       690 fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                       ++++++|+++.. .+.|.+||+..
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCC
Confidence             888888777765 68999999874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.71  E-value=0.0016  Score=75.27  Aligned_cols=161  Identities=10%  Similarity=0.061  Sum_probs=107.4

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEeccCC----------CCeEEEEEc-CCC---
Q 004885          560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEEHT----------QWITDVRFS-PSL---  609 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~D----------------g~V~IWdl~~~~~i~~l~~H~----------~~V~~Iafs-Pd~---  609 (725)
                      .+++.++..+|+.+..+                +.|..+|.++++.+..+....          .++. +... .++   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45666677777777654                389999999999988775322          1121 2232 466   


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEEecC------------C-CCe--------------------------EEEEEcc
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTFTGH------------S-TTV--------------------------MSLDFHP  650 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h------------~-~~V--------------------------~sl~fsP  650 (725)
                      ..++.++.+|.+.++|.++++ .+..+...            . .++                          ..++|+|
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGA-LVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEECCCcEEEEEECCCCC-EeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence            467778899999999999987 34333211            0 011                          2356777


Q ss_pred             CCCeEEEEE--------------------------------e------CCCcEEEEECCCCeeEEEEecCCCeEEEEEec
Q 004885          651 SKEDLLCSC--------------------------------D------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQP  692 (725)
Q Consensus       651 ~g~~llaSg--------------------------------s------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fsp  692 (725)
                      +...+++..                                +      .+|.|..||+.+++.+...+...++..-.+..
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t  482 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT  482 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence            665443321                                1      34789999999999988886543333222334


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          693 RLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       693 dg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .++.+++++.|+.|+.||.++|+++-+++-
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            567888899999999999999999988863

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.68  E-value=0.002  Score=68.99  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=107.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEECCCCCeeeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd----~~---~Lasgs~---DgtIrvWDl~~~~~~l~~  635 (725)
                      ...+++....++-+.|||+ +++.+..+..  +.++.|...|+    ++   ++++...   +.+|++|++......+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445666667788999999 7888888764  66788887773    22   3333333   579999977422213444


Q ss_pred             Eec------CC-CCeEEEEE--ccC-CCeEEEEEeCCCcEEEEECC-------CCeeEEEEecCCCeEEEEEecCCCEEE
Q 004885          636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL  698 (725)
Q Consensus       636 ~~~------h~-~~V~sl~f--sP~-g~~llaSgs~Dg~I~IwDl~-------t~~~v~~~~~~~~V~sv~fspdg~~Ll  698 (725)
                      +..      .. ..+..+|+  +|. +..+++....+|.+..|++.       +.+.+++|...+.+..|.+.+..++|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      11 45677887  775 44456677778999999882       346788888888899999999999999


Q ss_pred             EEEcCCeEEEEECC-----CCeEEEEE
Q 004885          699 AAAIENYISILDVE-----TQVCRLKL  720 (725)
Q Consensus       699 a~s~Dg~V~IwDl~-----tg~~v~~l  720 (725)
                      ++-.+..|..||.+     +++.+..+
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~  222 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRA  222 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEe
Confidence            99999878888866     45677655

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.58  E-value=0.029  Score=66.69  Aligned_cols=165  Identities=9%  Similarity=-0.038  Sum_probs=112.0

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCC
Q 004885          554 STSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPD  630 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~  630 (725)
                      .......|++.+.++.|+ +-...+.|.+.+++.......+.........|+++|...+|+.... + +.|.+.+++...
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            445577899988765454 5556789999999765544444444556899999998667766654 2 678888887554


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYI  706 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-Dg~V  706 (725)
                       ....+.........|++++.+..|+++-.....|..+|+........+..   -.....|++..  .+|+.+.. .+.|
T Consensus       549 -~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I  625 (791)
T 3m0c_C          549 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAI  625 (791)
T ss_dssp             -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEE
T ss_pred             -eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEE
Confidence             33333333457899999988887877766677899999975544444432   12456677643  46666655 5889


Q ss_pred             EEEECCCCeEEEEEe
Q 004885          707 SILDVETQVCRLKLQ  721 (725)
Q Consensus       707 ~IwDl~tg~~v~~l~  721 (725)
                      ...|..+|+.+..+.
T Consensus       626 ~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          626 FSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEETTTCCCCEEEE
T ss_pred             EEEeCCCCcceEEee
Confidence            999988886555553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.56  E-value=0.012  Score=69.99  Aligned_cols=162  Identities=12%  Similarity=0.013  Sum_probs=109.2

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----eEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~----~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~  627 (725)
                      ....+..|+|.+....|+ +-...+.|+.+++...    .....+.........|++++.+..|+.+ ...+.|.+.+++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345678999998555544 5455678999988752    2233344345567789999877655554 457899999998


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      ... ....+.........|+++|.+.+|+++-..+ +.|.+.++........+.. -.....|++++.++.|+.+.. .+
T Consensus       502 G~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          502 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             SSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            654 3333333445689999999877777665443 7899999975444333333 356899999988888887765 57


Q ss_pred             eEEEEECCCCeE
Q 004885          705 YISILDVETQVC  716 (725)
Q Consensus       705 ~V~IwDl~tg~~  716 (725)
                      .|.++|+.....
T Consensus       581 ~I~~~d~dG~~~  592 (791)
T 3m0c_C          581 SISSIDVNGGNR  592 (791)
T ss_dssp             EEEEEETTSCSC
T ss_pred             cEEEEecCCCce
Confidence            899999875533

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.54  E-value=0.005  Score=68.04  Aligned_cols=166  Identities=11%  Similarity=0.103  Sum_probs=96.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCeE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLATGGHD---KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~D---g~-V~IWdl~~~~~-i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl~  627 (725)
                      ......+++|+++|+++++....   .. +..++...... ...+. .......++++| ++.++++-..++.|+.+|..
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            44568999999999944444311   12 33333322111 11222 234467789999 66665565567899999998


Q ss_pred             CCCeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--CCee--EEEEecC----------------CCeE
Q 004885          628 NPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVFKCQ----------------SGAT  686 (725)
Q Consensus       628 ~~~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~--t~~~--v~~~~~~----------------~~V~  686 (725)
                      ++......+. +.......|+|+|+++.++++-...+.|+.+|+.  ++..  ...+...                ....
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  338 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN  338 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence            7662122222 1222345799999998788777778899998875  3321  1122110                2356


Q ss_pred             EEEE---------ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          687 QMRF---------QPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       687 sv~f---------spdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .++|         .+++..+++-...+.|++++. +|. +.++.|
T Consensus       339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G  381 (433)
T 4hw6_A          339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAG  381 (433)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEEC
T ss_pred             cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEe
Confidence            7898         565444444444678999985 564 444433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.54  E-value=0.019  Score=68.02  Aligned_cols=154  Identities=12%  Similarity=0.042  Sum_probs=107.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~--------H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl  626 (725)
                      ...|.++...++|++. .|+.++-|.+||..++........        ....|.++...+++..|..|+.++-|.+||.
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            3569999998888744 466777799999877654433211        2357999999888885777788788999999


Q ss_pred             CCCCeeeEEEec-----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeEEEEEecCC
Q 004885          627 ENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL  694 (725)
Q Consensus       627 ~~~~~~l~~~~~-----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------~~~V~sv~fspdg  694 (725)
                      .++.  +..+..     ....|.++..+++|. +++.. . +.|.+||..+++.......       ...|.++..+++|
T Consensus       435 ~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          435 NSGQ--VENFNQRNSQLVNENVYAILPDGEGN-LWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             TTCC--EEEECTTTSCCSCSCEEEEEECSSSC-EEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             CCCc--EEEeecCCCCcCCCeeEEEEECCCCC-EEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            8765  333321     245799999998887 44333 3 4588999988765433211       2568999999886


Q ss_pred             CEEEEEEcCCeEEEEECCCCeE
Q 004885          695 GRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      ...+ ++. +.|.+||..++++
T Consensus       510 ~lWi-gt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          510 RLWI-GGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             CEEE-EES-SCEEEEEEETTEE
T ss_pred             CEEE-EeC-CceEEEeCCCCeE
Confidence            6544 445 5688899877765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.52  E-value=0.0069  Score=69.39  Aligned_cols=152  Identities=14%  Similarity=0.068  Sum_probs=101.5

Q ss_pred             CEEEEEeC------CCcEEEEECCCCeEEEEeccCCCC--------------------------------------eEEE
Q 004885          568 KLLATGGH------DKKAVLWCTESFTVKSTLEEHTQW--------------------------------------ITDV  603 (725)
Q Consensus       568 ~~LaSgs~------Dg~V~IWdl~~~~~i~~l~~H~~~--------------------------------------V~~I  603 (725)
                      ..+++++.      ++.|+.+|..+++.+..+......                                      ...+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555544      799999999999998876532110                                      0235


Q ss_pred             EEcCCCCEEEEEeCC----------------CeEEEEECCCCCeeeEEEec--CC--------CCeEEEEEccCCC--eE
Q 004885          604 RFSPSLSRLATSSAD----------------RTVRVWDTENPDYSLRTFTG--HS--------TTVMSLDFHPSKE--DL  655 (725)
Q Consensus       604 afsPd~~~Lasgs~D----------------gtIrvWDl~~~~~~l~~~~~--h~--------~~V~sl~fsP~g~--~l  655 (725)
                      +++++...++.+..+                +.|..+|.++++ .+-.+..  |.        .++ -+....+|+  .+
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~  318 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL  318 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence            677766677766532                369999999988 3444331  21        222 123334664  46


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEecCCC--------------e--------------------------EEEEEecCCC
Q 004885          656 LCSCDNNSEIRYWSINNGSCAGVFKCQSG--------------A--------------------------TQMRFQPRLG  695 (725)
Q Consensus       656 laSgs~Dg~I~IwDl~t~~~v~~~~~~~~--------------V--------------------------~sv~fspdg~  695 (725)
                      ++.++.+|.|+++|..+|+.+..++....              +                          ..++|+|+.+
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            67788899999999999999887764220              1                          2467888878


Q ss_pred             EEEEEEc-------------------------------------CCeEEEEECCCCeEEEEEe
Q 004885          696 RILAAAI-------------------------------------ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       696 ~Lla~s~-------------------------------------Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+++...                                     ++.|..||+.+|+.+-+++
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~  461 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW  461 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec
Confidence            7776642                                     4789999999999887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.50  E-value=0.023  Score=60.80  Aligned_cols=144  Identities=8%  Similarity=0.105  Sum_probs=96.6

Q ss_pred             CCcEEEEECC-CCeEEEEecc------CC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEECCC---CC---eeeEEEe
Q 004885          576 DKKAVLWCTE-SFTVKSTLEE------HT-QWITDVRF--SPS-LS-RLATSSADRTVRVWDTEN---PD---YSLRTFT  637 (725)
Q Consensus       576 Dg~V~IWdl~-~~~~i~~l~~------H~-~~V~~Iaf--sPd-~~-~Lasgs~DgtIrvWDl~~---~~---~~l~~~~  637 (725)
                      +.+|.+|+++ ....+..+..      .. ..++.+|+  +|. +. ++++...++.+..|++..   +.   ..++.|.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            5799999774 2223444421      11 56777787  774 44 688888899999999842   21   2455655


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec---CCCeEEEEE--ecCCC-EEEEEEc-CCe
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC---QSGATQMRF--QPRLG-RILAAAI-ENY  705 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-----t~~~v~~~~~---~~~V~sv~f--spdg~-~Lla~s~-Dg~  705 (725)
                      - .+.+..|..++....++ .+..+..|..||.+     ++..+..+..   ...+..|++  .+++. +|++++. +++
T Consensus       178 l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          178 M-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             C-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             C-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            3 45788899998877455 67777667777755     3456655532   346888887  45555 7777774 789


Q ss_pred             EEEEECC-CCeEEEEEe
Q 004885          706 ISILDVE-TQVCRLKLQ  721 (725)
Q Consensus       706 V~IwDl~-tg~~v~~l~  721 (725)
                      +.|||.+ +.+.+.+|.
T Consensus       256 ~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          256 YAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEESSTTCCEEEEEE
T ss_pred             EEEEECCCCCcEEEEEE
Confidence            9999997 778888774

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.49  E-value=0.0055  Score=72.51  Aligned_cols=159  Identities=9%  Similarity=-0.027  Sum_probs=89.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCC--eE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEE
Q 004885          556 SKVESCHFSPDGKLLATGGH---DKKAVLWCTESF--TV--KSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVW  624 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~---Dg~V~IWdl~~~--~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrvW  624 (725)
                      .....+.|||||++|+..+.   ...|+++|+.++  ..  .............+.|+..+.+++....+    ..|.++
T Consensus       271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~  350 (751)
T 2xe4_A          271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIA  350 (751)
T ss_dssp             TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEE
Confidence            34678899999998876653   346888898765  23  22233345566777766544445555444    366777


Q ss_pred             ECCCCCeeeEE-EecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEEC-------CCCeeEEEEecCCC--eEEEEE--
Q 004885          625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSI-------NNGSCAGVFKCQSG--ATQMRF--  690 (725)
Q Consensus       625 Dl~~~~~~l~~-~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl-------~t~~~v~~~~~~~~--V~sv~f--  690 (725)
                      |+.++. .... +..+...+.--.|.+.++.++++...++.  |+++|+       ..+..+..+.....  +..+.+  
T Consensus       351 d~~~~~-~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~  429 (751)
T 2xe4_A          351 PRGQPS-DWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQ  429 (751)
T ss_dssp             ETTSTT-CCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGG
T ss_pred             cCCCcc-cceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCc
Confidence            776532 2233 33444433323344456778888887875  556675       34431334433222  333332  


Q ss_pred             --ecCCCEEE-EEEcC---CeEEEEECCCCe
Q 004885          691 --QPRLGRIL-AAAIE---NYISILDVETQV  715 (725)
Q Consensus       691 --spdg~~Ll-a~s~D---g~V~IwDl~tg~  715 (725)
                        ++++..++ +.++.   ..|..+|+.+++
T Consensus       430 ~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          430 MLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             CCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence              34555443 43432   568888888775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.48  E-value=0.032  Score=66.01  Aligned_cols=152  Identities=8%  Similarity=-0.020  Sum_probs=104.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~  630 (725)
                      ...|.+++..+++++|.+|+.++-|.+||..+++......    .+...|.++...+++.+.+.. .+ -|.+||..++.
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence            3569999998888856677777789999988776543322    134679999998888755544 44 58889988754


Q ss_pred             eeeEEEec-------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeEEEEEecCCC
Q 004885          631 YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLG  695 (725)
Q Consensus       631 ~~l~~~~~-------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~--------~~~~V~sv~fspdg~  695 (725)
                        ...+..       ....|.++..+++|. +.+.. . +.|.+||..++..  .+.        ....|.+|..+++|.
T Consensus       483 --~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          483 --FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             --EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred             --EEEccccccccccCCceEEEEEECCCCC-EEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence              232221       235689999999887 44333 3 4588999887766  332        134689999988866


Q ss_pred             EEEEEEcCCeEEEEECCCCeEE
Q 004885          696 RILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      .. +++.+ .|..||..+++..
T Consensus       556 lW-igT~~-Gl~~~d~~~~~~~  575 (795)
T 4a2l_A          556 IW-VGTRE-GFYCFNEKDKQIK  575 (795)
T ss_dssp             EE-EEESS-CEEEEETTTTEEE
T ss_pred             EE-EEeCC-CceeECCCCCcEE
Confidence            44 44444 6888998877554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.47  E-value=0.004  Score=68.83  Aligned_cols=153  Identities=10%  Similarity=0.062  Sum_probs=98.6

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----Ce-EEEEECCCC
Q 004885          557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RT-VRVWDTENP  629 (725)
Q Consensus       557 ~V~~i~fSpd--g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gt-IrvWDl~~~  629 (725)
                      .-.+++|+|+  +..|+.+...+.|+.+|..++...... .......+|+|+++++ |+.+...    .. +...+....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4578999984  445666655589999999877665443 3456689999999999 5544432    22 333333222


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec--CCCeEEEEEecCCCEEEEEEc-CCe
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC--QSGATQMRFQPRLGRILAAAI-ENY  705 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~--~~~V~sv~fspdg~~Lla~s~-Dg~  705 (725)
                      ......+. .......++++|+...++++-..++.|+.+|..++.....+ ..  ......|+|+|++++|+++.. .+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11111222 23445778899944447766667788999999877763333 22  223457999999997766655 688


Q ss_pred             EEEEECC
Q 004885          706 ISILDVE  712 (725)
Q Consensus       706 V~IwDl~  712 (725)
                      |+.+|+.
T Consensus       297 I~~~~~d  303 (433)
T 4hw6_A          297 IYRVDYN  303 (433)
T ss_dssp             EEEEEBC
T ss_pred             EEEEeCC
Confidence            9998865

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.017  Score=63.66  Aligned_cols=117  Identities=16%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEECCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004885          554 STSKVESCHFSPDGKLLATGGHD-K----KAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT  626 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~D-g----~V~IWdl~~~-~~i~~l~~H~~~V~~IafsP-d~~~Lasgs~DgtIrvWDl  626 (725)
                      .......|+|++++++|+++... +    .+.+++.... .....+.. .....+++++| ++.++++-..++.|..||.
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            44568899999999966666542 2    3444443321 11122222 33467888999 6666666666789999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~  671 (725)
                      ...........+.......|+|+|++++++++-...+.|..++.+
T Consensus       256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            866521111112224568899999999778777778899998765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.41  E-value=0.0052  Score=71.38  Aligned_cols=162  Identities=10%  Similarity=0.030  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEe-CC-----CeEEEEEC
Q 004885          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-AD-----RTVRVWDT  626 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H~-~~V~~IafsPd~~~Lasgs-~D-----gtIrvWDl  626 (725)
                      .....++++..+++++++|+. +..+.+||..+.+-...-..+. ..-.++++.+++++++.|+ .+     ..+.+||.
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            334456788889999999984 4589999987654332211111 1223455667888888888 44     46889998


Q ss_pred             CCCCeeeE------------------------EEecCC---------------------------------------CCe
Q 004885          627 ENPDYSLR------------------------TFTGHS---------------------------------------TTV  643 (725)
Q Consensus       627 ~~~~~~l~------------------------~~~~h~---------------------------------------~~V  643 (725)
                      .+......                        .+-+..                                       ...
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            76531110                        000000                                       012


Q ss_pred             EEEEEccCCCeEEEEEeCCC-----------cEEEEECCCCeeEEEE--ec--CCCeEEEEEecCCCEEEEEEcC-----
Q 004885          644 MSLDFHPSKEDLLCSCDNNS-----------EIRYWSINNGSCAGVF--KC--QSGATQMRFQPRLGRILAAAIE-----  703 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg-----------~I~IwDl~t~~~v~~~--~~--~~~V~sv~fspdg~~Lla~s~D-----  703 (725)
                      .++.|...+..+++.|+.++           .|.+||..+.......  ..  .....++++.|++..+++++.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            33444343455777776432           6788888877665443  11  2223455677888888888754     


Q ss_pred             ------CeEEEEECCCCeE
Q 004885          704 ------NYISILDVETQVC  716 (725)
Q Consensus       704 ------g~V~IwDl~tg~~  716 (725)
                            ..+.+||.++.+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEE
T ss_pred             CCCCcccceEEEcCCCCce
Confidence                  5689999987653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.36  E-value=0.017  Score=60.96  Aligned_cols=157  Identities=9%  Similarity=-0.015  Sum_probs=104.4

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeE-EEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeee
Q 004885          557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (725)
Q Consensus       557 ~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~-i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l  633 (725)
                      .+..++|++.+..| .+-...+.|..++.+.... ...+...-.....+++.+.+..| ++-...+.|.+++++... ..
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence            36789999855544 4545678899999876532 12222223456789999855555 454567899999997644 22


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD  710 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD  710 (725)
                      ..+.........|+++|.+..++++-. ..+.|..++++.......... -.....|+|+++++.|+.+.. .+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            333344456789999998776776653 357899998874332222222 345789999998888887765 58899999


Q ss_pred             CCCC
Q 004885          711 VETQ  714 (725)
Q Consensus       711 l~tg  714 (725)
                      +...
T Consensus       195 ~dG~  198 (318)
T 3sov_A          195 LDGT  198 (318)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8743

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.0042  Score=69.81  Aligned_cols=153  Identities=15%  Similarity=0.157  Sum_probs=100.2

Q ss_pred             eEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 004885          558 VESCHFSP-DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------  619 (725)
Q Consensus       558 V~~i~fSp-dg~~LaSgs~-Dg~V~IWdl~~~~~i~~l~~H---~~~V~~Iaf-------sPd~~~Lasgs~Dg------  619 (725)
                      ...|+|+| +...|+++.. .+.|++.|++++.....+..-   ......|+|       ++++++|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56899998 3454555444 467888998887766544331   235899999       99999777776543      


Q ss_pred             -eEEEEECCC-CCee----eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-------CCee-----------
Q 004885          620 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC-----------  675 (725)
Q Consensus       620 -tIrvWDl~~-~~~~----l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~-------t~~~-----------  675 (725)
                       .|.+++... +...    ...+... .....++++|++..|+++...++.|+.+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             256665443 1211    0222221 2356788999777788888788899999997       5543           


Q ss_pred             EEE-Eec--CCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885          676 AGV-FKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV  711 (725)
Q Consensus       676 v~~-~~~--~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl  711 (725)
                      ... +..  ......|+|+|+|.+|+++.. ...|+.+|.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            112 222  345789999999997666654 678988654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.32  E-value=0.058  Score=62.47  Aligned_cols=162  Identities=9%  Similarity=-0.059  Sum_probs=109.2

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~  632 (725)
                      .....+++.+.+..| ++-...+.|.+.+++.......+...-.....|+++|...+|+....  .+.|...+++...  
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--  157 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--  157 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--
Confidence            346788888765544 45455678999998765433333334456789999996666666653  4678888887554  


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV  711 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl  711 (725)
                      ...+...-.....|++++++..++++-...+.|..+|+...........-.....|++..  ..|+.+.. .+.|...|.
T Consensus       158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred             eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEEC
Confidence            333333445688999999888788777778899999997644422222244567888865  46666655 688999998


Q ss_pred             CCCeEEEEEe
Q 004885          712 ETQVCRLKLQ  721 (725)
Q Consensus       712 ~tg~~v~~l~  721 (725)
                      .+|+.+..+.
T Consensus       236 ~tg~~~~~l~  245 (628)
T 4a0p_A          236 TSGQNRTIIQ  245 (628)
T ss_dssp             TTCCSCEEEE
T ss_pred             CCCCceEEEe
Confidence            8886555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.27  E-value=0.00082  Score=79.04  Aligned_cols=161  Identities=9%  Similarity=-0.031  Sum_probs=103.0

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCeeeE
Q 004885          558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSLR  634 (725)
Q Consensus       558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-D-gtIrvWDl~~~~~~l~  634 (725)
                      ...|++.+. ++++++-...+.|.+++++.......+.........|+++|.+.+|+.+.. . +.|.++++.... ...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence            456777754 444455455788999998765544444333345678899997665555543 2 678888776433 122


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IENYISILD  710 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s-~Dg~V~IwD  710 (725)
                      .+.........|+|+|++..|+++-...+.|.++|+........+..   ......|++..+  .|+.+. ..+.|.++|
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence            22222345678999998887887777778999999975433333221   133556666654  455444 468999999


Q ss_pred             CCCCeEEEEEe
Q 004885          711 VETQVCRLKLQ  721 (725)
Q Consensus       711 l~tg~~v~~l~  721 (725)
                      ..+|+.+..|.
T Consensus       612 ~~~G~~~~~i~  622 (699)
T 1n7d_A          612 RLTGSDVNLLA  622 (699)
T ss_dssp             TTTEEEEECCC
T ss_pred             ccCCCceEEee
Confidence            99998887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.21  E-value=0.011  Score=68.01  Aligned_cols=149  Identities=9%  Similarity=-0.005  Sum_probs=95.4

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeEEEe
Q 004885          569 LLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       569 ~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~----~~V~~-IafsPd~~~Lasgs------~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      +|++++.|+.|+.+|..+++.+.......    ..+++ ..+. + ..|++++      .++.|+.+|.++++ .+-.+.
T Consensus       123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~-~~W~~~  199 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGE-QVWRAY  199 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCc-EEEEEc
Confidence            38888899999999999999887764322    01211 1111 3 4555554      38999999999988 333332


Q ss_pred             cCCCC-------------------------------------e-EEEEEccCCCeEEEEEeCC----------------C
Q 004885          638 GHSTT-------------------------------------V-MSLDFHPSKEDLLCSCDNN----------------S  663 (725)
Q Consensus       638 ~h~~~-------------------------------------V-~sl~fsP~g~~llaSgs~D----------------g  663 (725)
                      .....                                     + ..+++++....++ .+..+                +
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~  278 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTM  278 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSS
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccc
Confidence            11100                                     1 1345667766444 44433                3


Q ss_pred             cEEEEECCCCeeEEEEecCCC-------e---EEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFKCQSG-------A---TQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~-------V---~sv~fs-pdg---~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|..+|.++|+.+..+.....       +   .-+... .+|   ..++.++.+|.|+++|.++|+.+-.++
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            799999999999988875211       1   112222 466   345667789999999999999987765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.15  E-value=0.082  Score=55.60  Aligned_cols=160  Identities=11%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl--~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg  619 (725)
                      +.++..+.  ..+...+.++++.+++.+++++...+.++-+|-  .+.+.+.  ......+..+.+.+++..+ .++.+|
T Consensus       151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G  225 (327)
T 2xbg_A          151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGG  225 (327)
T ss_dssp             TSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTT
T ss_pred             CCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCc
Confidence            45565543  245567999999999888877654443344442  3344432  2345678999999988755 445678


Q ss_pred             eEEEEECCCCCeeeEEEe-c---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEe
Q 004885          620 TVRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQ  691 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~-~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fs  691 (725)
                      .+++++.+.+. ....+. .   +...+.+|.|.+++. +++++. ++.| ++..+.++.-..+..    ...+.+|.|.
T Consensus       226 ~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          226 KIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             EEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             eEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            87776533222 111111 1   223588999998765 555544 6767 455555543333331    3568889997


Q ss_pred             cCCCEEEEEEcCCeEEEEEC
Q 004885          692 PRLGRILAAAIENYISILDV  711 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ++ ..+++++.+|.|..++-
T Consensus       302 ~~-~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          302 SP-DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             ET-TEEEEECSTTEEEEECC
T ss_pred             CC-CceEEEcCCceEEEEcC
Confidence            55 56778888998877753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.10  E-value=0.0096  Score=68.38  Aligned_cols=133  Identities=11%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             CCCC---EEEEEeCCCcEEEEECCCCeEEEEeccCC-------------CCe----------------------------
Q 004885          565 PDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT-------------QWI----------------------------  600 (725)
Q Consensus       565 pdg~---~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~-------------~~V----------------------------  600 (725)
                      .+|+   .|+.++.+|.|+++|.++++.+..+....             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4674   78889999999999999999887654321             000                            


Q ss_pred             ----EEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCCeeeEEEecCCCCe
Q 004885          601 ----TDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTFTGHSTTV  643 (725)
Q Consensus       601 ----~~IafsPd~~~Lasgs---------------------------------~DgtIrvWDl~~~~~~l~~~~~h~~~V  643 (725)
                          ..++++|+..++++..                                 .++.|..||+.+++ .+-.+... ..+
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-~~W~~~~~-~~~  488 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEH-LPL  488 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEES-SCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC-EEEEecCC-CCC
Confidence                1345666544554432                                 25789999999988 33333222 122


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeE--EEEEecCCCEEEEE
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAA  700 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~--sv~fspdg~~Lla~  700 (725)
                      ..-.....+. +++.++.|+.|+.||.++|+.+..++....+.  -+.|..+|+.+++.
T Consensus       489 ~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          489 WAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             CSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            1111122345 55568899999999999999999998755543  36677787644443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.09  E-value=0.055  Score=63.83  Aligned_cols=154  Identities=9%  Similarity=-0.016  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~--~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ...|.++...+++.+.+ |+.++-|.++|..+++......  .....|.+|...+++.+. .|+. +-|.+||..+... 
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~-  481 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKV-  481 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSC-
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeE-
Confidence            45699999988887554 6666779999987765443221  134679999988877644 4455 5688999887652 


Q ss_pred             eEEEecC-----CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeEEEEEecCCCEEEEEEc
Q 004885          633 LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       633 l~~~~~h-----~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----~~~V~sv~fspdg~~Lla~s~  702 (725)
                      .......     ...|.++..+++|. +.+ ++.++.|..||..+++... +..     ...|.++...++|.. .+++.
T Consensus       482 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~l-Wi~T~  557 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRSIAQDSEGR-FWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQM-WLATG  557 (781)
T ss_dssp             CEEECTTTSSCSCSCEEEEEECTTCC-EEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCE-EEEET
T ss_pred             EecccCcccccccceeEEEEEcCCCC-EEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCE-EEEEC
Confidence            2222111     35799999999887 443 3433458889988765433 321     345889998888664 44555


Q ss_pred             CCeEEEEECCCCeE
Q 004885          703 ENYISILDVETQVC  716 (725)
Q Consensus       703 Dg~V~IwDl~tg~~  716 (725)
                      +|.|..||.++++.
T Consensus       558 ~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          558 EGLVCFPSARNFDY  571 (781)
T ss_dssp             TEEEEESCTTTCCC
T ss_pred             CCceEEECCCCCcE
Confidence            66558888877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.05  E-value=0.068  Score=61.74  Aligned_cols=162  Identities=8%  Similarity=-0.043  Sum_probs=105.4

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~  632 (725)
                      .....+++.+.+..|+ +-...+.|.+.+++.......+...-.....|+++|...+|+....  .+.|...+++... .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-e
Confidence            4688999998655454 4456789999998765443333344556789999997666666654  3567777776543 2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILD  710 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD  710 (725)
                      .............|++++++..++++-...+.|..+|+.......... .......|++..+  .|+.+.. .+.|...|
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence            233333345678999999888788776677889999997544333322 1233456777655  5665554 67899999


Q ss_pred             CCCCeEEEEE
Q 004885          711 VETQVCRLKL  720 (725)
Q Consensus       711 l~tg~~v~~l  720 (725)
                      ..+|+.+..+
T Consensus       241 ~~tg~~~~~i  250 (619)
T 3s94_A          241 KYTGEGLREI  250 (619)
T ss_dssp             SSSCCCCEEC
T ss_pred             CCCCcccEEE
Confidence            9888655544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.05  E-value=0.066  Score=62.00  Aligned_cols=158  Identities=8%  Similarity=-0.008  Sum_probs=109.8

Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeee
Q 004885          556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL  633 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~l  633 (725)
                      ..+..|+|++.+..|+. -..++.|+.++++.......+..-......|++++.+..|+.+ ...+.|.+.+++... ..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence            35789999986665554 4567899999987654444444333457789998866655554 456789999997654 22


Q ss_pred             EEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885          634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV  711 (725)
Q Consensus       634 ~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl  711 (725)
                      ..+...-.....|+++|....++++-- ..+.|...++........+..-.....|+++++++.|+.+.. .+.|..+|+
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            233234456789999997776776642 256888888875544444444566899999998888887765 578999998


Q ss_pred             CCC
Q 004885          712 ETQ  714 (725)
Q Consensus       712 ~tg  714 (725)
                      ...
T Consensus       196 dG~  198 (628)
T 4a0p_A          196 LGL  198 (628)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.11  Score=61.33  Aligned_cols=155  Identities=8%  Similarity=0.007  Sum_probs=101.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ...|.+++..++|++. .|+.++-|.+||..+.......   ......|.++...+++.+. .|+.++-|.++|..++. 
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-  438 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK-  438 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE-
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc-
Confidence            3569999998877744 5555666889997654322111   1234679999988877654 46666778899987654 


Q ss_pred             eeEEEe---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEecCCCEEEEEEc
Q 004885          632 SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       632 ~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fspdg~~Lla~s~  702 (725)
                       +..+.   .....|.++..++++. +++ ++. +.|.+||..+++.......      ...|.+++..++|. |.+++.
T Consensus       439 -~~~~~~~~~~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~  513 (781)
T 3v9f_A          439 -FQIIELEKNELLDVRVFYEDKNKK-IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF  513 (781)
T ss_dssp             -EEECCSTTTCCCCEEEEEECTTSE-EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES
T ss_pred             -EEEeccCCCCCCeEEEEEECCCCC-EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEc
Confidence             33332   1345799999888876 443 343 5689999987765443322      25689999988865 455565


Q ss_pred             CCeEEEEECCCCeEE
Q 004885          703 ENYISILDVETQVCR  717 (725)
Q Consensus       703 Dg~V~IwDl~tg~~v  717 (725)
                      ++.|..||.++++..
T Consensus       514 ~~Gl~~~~~~~~~~~  528 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVR  528 (781)
T ss_dssp             SSCEEEECTTCCEEE
T ss_pred             CCCEEEEeCCCCeEE
Confidence            455888988776543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.90  E-value=0.12  Score=54.27  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=89.5

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 004885          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRT  620 (725)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i-~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt  620 (725)
                      +.++..+.....+.+.+.+|.+.+++..++++ .++.|.. ..+.++.- .....+...+..+++.+++.+++++.....
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~  185 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF  185 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            34455443322344557888887777666655 4665433 22223222 222345667899999999888877755544


Q ss_pred             EEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeEEEEEecCCC
Q 004885          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLG  695 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-----~~~~V~sv~fspdg~  695 (725)
                      ++-+|-.... -...-......+..+.+.+++. +++ ++.+|.|++++.+.+..-..+.     ....+.++.|.+++.
T Consensus       186 ~~S~d~gG~t-W~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~  262 (327)
T 2xbg_A          186 YSTWEPGQTA-WEPHNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE  262 (327)
T ss_dssp             EEEECTTCSS-CEEEECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred             EEEeCCCCCc-eeECCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence            4545531111 1111233456789999999876 443 4457888777533233222222     123588899988755


Q ss_pred             EEEEEEcCCeE
Q 004885          696 RILAAAIENYI  706 (725)
Q Consensus       696 ~Lla~s~Dg~V  706 (725)
                       +++++.++.|
T Consensus       263 -~~~~g~~g~i  272 (327)
T 2xbg_A          263 -VWLAGGAGAL  272 (327)
T ss_dssp             -EEEEESTTCE
T ss_pred             -EEEEeCCCeE
Confidence             4555566766

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.85  E-value=0.08  Score=56.88  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=100.1

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEecc-----CCCCeEEEEEcC-
Q 004885          549 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP-  607 (725)
Q Consensus       549 ~~l~~H~~~V~~i~fSpdg~~LaSgs------------~Dg~V~IWdl~~--~~~i-~~l~~-----H~~~V~~IafsP-  607 (725)
                      ..+++-.....++++.|+|..+++++            .+|.|.++|.++  .+.. ..+.+     .......|.+.+ 
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence            33444333466777888876555552            689999999873  2221 12222     234667777766 


Q ss_pred             -CCC-EEEEEeC---CCeEEEEECCCCCee---eEEEecC-CCCeEEEEEccCCCeEEEEEeC-----------------
Q 004885          608 -SLS-RLATSSA---DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCDN-----------------  661 (725)
Q Consensus       608 -d~~-~Lasgs~---DgtIrvWDl~~~~~~---l~~~~~h-~~~V~sl~fsP~g~~llaSgs~-----------------  661 (725)
                       ++. +|+++..   +.+|.+|+++.....   +..+.+. -...+.+++.++|. ++++.+.                 
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence             343 5666543   467888887754322   2233322 24579999999987 6656541                 


Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                      .|.|..||.  +++......-...+.|+|+||+++|+++.. .+.|.+||+..
T Consensus       202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            244555554  444433443456899999999998888765 68999999863

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.83  E-value=0.12  Score=54.71  Aligned_cols=153  Identities=9%  Similarity=0.078  Sum_probs=96.7

Q ss_pred             eEEEEE---cCCCCEEEEEeC-------------CCcEEEEECC---CCeEEEEec--c-----------CCCCeEEEEE
Q 004885          558 VESCHF---SPDGKLLATGGH-------------DKKAVLWCTE---SFTVKSTLE--E-----------HTQWITDVRF  605 (725)
Q Consensus       558 V~~i~f---Spdg~~LaSgs~-------------Dg~V~IWdl~---~~~~i~~l~--~-----------H~~~V~~Iaf  605 (725)
                      +..|.|   .|+++++++...             +..|..||+.   +++.+....  .           -...+.+|+.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            578999   588777775442             6789999998   776655442  1           1135889999


Q ss_pred             cCCCCEEEEEeCC-CeEEEEECCCCCeeeEEEe-c-----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee--E
Q 004885          606 SPSLSRLATSSAD-RTVRVWDTENPDYSLRTFT-G-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--A  676 (725)
Q Consensus       606 sPd~~~Lasgs~D-gtIrvWDl~~~~~~l~~~~-~-----h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~--v  676 (725)
                      .++|+..++++.. +.|..++.+...  +..+. .     .....+.|+++|+|..|++.-+ ++.|..+|+++...  +
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v  221 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPE  221 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCE
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceee
Confidence            9999999999888 887777776543  22221 1     1223678999999986665555 99999999985433  2


Q ss_pred             EEEe-c----CCCeEEE-EEecCCCEEEEEE-cCCeEEEEECCC
Q 004885          677 GVFK-C----QSGATQM-RFQPRLGRILAAA-IENYISILDVET  713 (725)
Q Consensus       677 ~~~~-~----~~~V~sv-~fspdg~~Lla~s-~Dg~V~IwDl~t  713 (725)
                      ..-. +    -.....| ..-.+|+.|+++. ..+.+.+.+...
T Consensus       222 ~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          222 PVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             ECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            1110 1    1223443 3334556644444 456566665443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.043  Score=60.04  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------EEEEecc------CCCCeEEEEEcC---CCCEEEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------VKSTLEE------HTQWITDVRFSP---SLSRLATS  615 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~------------~i~~l~~------H~~~V~~IafsP---d~~~Lasg  615 (725)
                      .|..+..||+|++||..+ +..|.|..+..+.            ..+.+.-      ...+|..+.|||   .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            578899999999999986 5689998886321            1122221      256799999999   46789999


Q ss_pred             eCCCeEEEEECCCCC-eeeEEEe---------cCCCCeEEEEEccCCCeEEEEE-eCCCcEEEE
Q 004885          616 SADRTVRVWDTENPD-YSLRTFT---------GHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYW  668 (725)
Q Consensus       616 s~DgtIrvWDl~~~~-~~l~~~~---------~h~~~V~sl~fsP~g~~llaSg-s~Dg~I~Iw  668 (725)
                      ..|++||+||+.... .+. .+.         .....|.+++|..++=.+++.. +.+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999999998632 122 222         2235689999999776555433 356777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.75  E-value=0.17  Score=55.60  Aligned_cols=161  Identities=14%  Similarity=0.200  Sum_probs=109.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCC----CCeEEEEEcCCCCEEEEEeC-------CCeEEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHT----QWITDVRFSPSLSRLATSSA-------DRTVRV  623 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H~----~~V~~IafsPd~~~Lasgs~-------DgtIrv  623 (725)
                      ..|..-.|-.+ +.|+..+ +..|+-|+++. ..+++.|..|.    ..|..-..+++.++++..+-       .|.+-+
T Consensus       106 e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL  183 (494)
T 1bpo_A          106 DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (494)
T ss_dssp             SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence            45777788644 4555554 56899999974 45777776663    45777778888888765432       467889


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEcc--CCCeEEEEEeCC---CcEEEEECCCC---e-----eEEE-Ee-c---CCCe
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNN---SEIRYWSINNG---S-----CAGV-FK-C---QSGA  685 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP--~g~~llaSgs~D---g~I~IwDl~t~---~-----~v~~-~~-~---~~~V  685 (725)
                      |.++...  -..+.||...-..+.+.-  ....+||.+...   +.++|.++...   .     .... +- .   .+-.
T Consensus       184 YS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP  261 (494)
T 1bpo_A          184 YSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (494)
T ss_dssp             EESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred             eeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence            9998764  677788765444443321  112366665543   78999998532   1     1111 11 1   3446


Q ss_pred             EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                      .++..++..+.++..+.-|.|++||++|+.|+..-
T Consensus       262 vamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            78899999999999999999999999999998754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.75  E-value=0.064  Score=58.71  Aligned_cols=144  Identities=14%  Similarity=0.082  Sum_probs=95.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------
Q 004885          564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------  630 (725)
Q Consensus       564 Spdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~---------  630 (725)
                      +.+|..|+.+- ++.||..++......+.++-.    -..|..+..+|+|++||..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            44677666664 578999988744334444322    23578899999999998885 6688998886322         


Q ss_pred             --eeeEEEec------CCCCeEEEEEccCCCe--EEEEEeCCCcEEEEECCCC--eeEEEEec----------CCCeEEE
Q 004885          631 --YSLRTFTG------HSTTVMSLDFHPSKED--LLCSCDNNSEIRYWSINNG--SCAGVFKC----------QSGATQM  688 (725)
Q Consensus       631 --~~l~~~~~------h~~~V~sl~fsP~g~~--llaSgs~Dg~I~IwDl~t~--~~v~~~~~----------~~~V~sv  688 (725)
                        ...+.+.-      ....|..+.|||.+..  .|++-..|+.||+||+...  ++. .++.          ...|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence              01223322      2467999999997543  5667777999999999852  222 2321          2468899


Q ss_pred             EEecCCCEEEEEE--cCCeEEEEE
Q 004885          689 RFQPRLGRILAAA--IENYISILD  710 (725)
Q Consensus       689 ~fspdg~~Lla~s--~Dg~V~IwD  710 (725)
                      +|..++=.|++..  .+|.|+-..
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEcCCCcEEEEEecCCCCCEEEEC
Confidence            9999766666655  567776543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.69  E-value=0.0024  Score=75.02  Aligned_cols=158  Identities=13%  Similarity=0.030  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q 004885          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~  629 (725)
                      ..+..|+|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+.+..| ++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4467899998776666554 457899999875    22222222122345678888654444 44445778999998765


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeE
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYI  706 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V  706 (725)
                      . ....+.........|+++|.+.+|+++-... +.|.++++........+.. -.....|+|+|+++.|+++.. .+.|
T Consensus       486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            4 2222222234567889999877677654333 6888888764322222221 245678999998777766654 5789


Q ss_pred             EEEECCCC
Q 004885          707 SILDVETQ  714 (725)
Q Consensus       707 ~IwDl~tg  714 (725)
                      .++|+...
T Consensus       565 ~~~d~dG~  572 (699)
T 1n7d_A          565 SSIDVNGG  572 (699)
T ss_dssp             EEECSSSS
T ss_pred             EEEccCCC
Confidence            99998753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.67  E-value=0.0054  Score=71.25  Aligned_cols=155  Identities=7%  Similarity=0.032  Sum_probs=91.5

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCe--EEEEec-cCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 004885          560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFT--VKSTLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV  623 (725)
Q Consensus       560 ~i~fSp-dg~~LaSgs~Dg-----------~V~IWdl~~~~--~i~~l~-~H~~~V~~IafsPd~~~Lasgs~-DgtIrv  623 (725)
                      .+++.+ ++++++.|+.+.           .+.+||..+.+  .+..+. .+...+.++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887653           58899987654  222332 23344556788889999999884 558999


Q ss_pred             EECCCCCeeeEEEe-cC-CCCeEEEEEccCCCeEEEEEe-CC-----CcEEEEECCCCeeEEEE-----ecCCCeEEEEE
Q 004885          624 WDTENPDYSLRTFT-GH-STTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRF  690 (725)
Q Consensus       624 WDl~~~~~~l~~~~-~h-~~~V~sl~fsP~g~~llaSgs-~D-----g~I~IwDl~t~~~v~~~-----~~~~~V~sv~f  690 (725)
                      ||..+...  .... .+ ...-.++++.++++ +++.|+ .+     ..+.+||..+.+....-     ..........+
T Consensus       270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEE--EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCce--eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            99987641  1111 11 11224456667777 666766 34     46999999987755431     00000000112


Q ss_pred             ecCCCEEEEEEcC---------CeEEEEECCCCeEE
Q 004885          691 QPRLGRILAAAIE---------NYISILDVETQVCR  717 (725)
Q Consensus       691 spdg~~Lla~s~D---------g~V~IwDl~tg~~v  717 (725)
                      ..++..++.++.+         ..|.+||..+....
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~  382 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  382 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence            2344444445433         45788888776533

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.54  E-value=0.06  Score=57.46  Aligned_cols=142  Identities=12%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cCCCCeEEEEEcCC---CCEEEEEeC-C-----CeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV  621 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~---~H~~~V~~IafsPd---~~~Lasgs~-D-----gtI  621 (725)
                      ..-..++|.|+|+++++ ..++.|++++  +++.  +..+.   ........|+|+|+   +..|+++.. +     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34679999999985554 5679999998  3432  22121   12356889999998   556655543 2     578


Q ss_pred             EEEECCCCC-----eeeEEEe---cCCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 004885          622 RVWDTENPD-----YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG-------  673 (725)
Q Consensus       622 rvWDl~~~~-----~~l~~~~---~h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~-------  673 (725)
                      ..|++....     ..+..+.   +.......|+|.|+|. ++++.+.             .+.|.-+|.+..       
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            888876432     1111122   1111246899999996 6655432             145666665420       


Q ss_pred             -----eeEEEEe-cCCCeEEEEEecCCCEEEEEE
Q 004885          674 -----SCAGVFK-CQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       674 -----~~v~~~~-~~~~V~sv~fspdg~~Lla~s  701 (725)
                           .....+. .......++|+|+.+.|+++.
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence                 1111222 123467889999444454443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.42  E-value=0.11  Score=53.30  Aligned_cols=142  Identities=12%  Similarity=0.060  Sum_probs=77.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeee
Q 004885          566 DGKLLATGGHD-----KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (725)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~l  633 (725)
                      ++++++.|+.+     ..+.+||..+.+  .+..+........++.+  ++.+++.|+.+     ..+.+||+.+..-  
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW--  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--
Confidence            67777777654     368889987654  23222222222222323  56666666654     4588899887652  


Q ss_pred             EEEec---CCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885          634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      ..+..   .......+.+   +..+++.|+.+     ..|.+||+.+.+....-..  .....+++.. ++..++.++.+
T Consensus       188 ~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  263 (301)
T 2vpj_A          188 TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYD  263 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcC
Confidence            22211   1111222332   34577777653     4689999998766543222  1111222222 45566666654


Q ss_pred             -----CeEEEEECCCCe
Q 004885          704 -----NYISILDVETQV  715 (725)
Q Consensus       704 -----g~V~IwDl~tg~  715 (725)
                           ..|.+||+++.+
T Consensus       264 ~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          264 GNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSSBEEEEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence                 468999998863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.40  E-value=0.074  Score=59.64  Aligned_cols=161  Identities=9%  Similarity=0.041  Sum_probs=95.5

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCeE-----------EEE-e-ccCCCCeEEEEEcCCCCEEEEEe
Q 004885          558 VESCHFSPD-GKLLATGGHDKKAVLWCTE-------SFTV-----------KST-L-EEHTQWITDVRFSPSLSRLATSS  616 (725)
Q Consensus       558 V~~i~fSpd-g~~LaSgs~Dg~V~IWdl~-------~~~~-----------i~~-l-~~H~~~V~~IafsPd~~~Lasgs  616 (725)
                      ...++++|+ +.++++-..++.|..+|++       ++..           ... + .+.....+.|+|+|++++|+.+.
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            457788994 5555666677889999987       4432           111 1 12234568999999999766554


Q ss_pred             -CCCeEEEEECCCCCeee---EEEecC---C------------CCeE-EEEEc-------cCCCeEEEEEeCCCcEEEEE
Q 004885          617 -ADRTVRVWDTENPDYSL---RTFTGH---S------------TTVM-SLDFH-------PSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       617 -~DgtIrvWDl~~~~~~l---~~~~~h---~------------~~V~-sl~fs-------P~g~~llaSgs~Dg~I~IwD  669 (725)
                       ....|+.+|.+.....+   .++.+.   .            .... .++..       +.+ .|+++-..+.+|+.++
T Consensus       329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe
Confidence             56788887654322111   233322   1            1233 34443       333 4666666778999999


Q ss_pred             CCCCeeEEEEecC-------------------------CCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          670 INNGSCAGVFKCQ-------------------------SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       670 l~t~~~v~~~~~~-------------------------~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                       .++. +.++-+.                         .....|+++++.+.|+++.. ...|+.++++...+++...
T Consensus       408 -~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~  483 (496)
T 3kya_A          408 -PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE  483 (496)
T ss_dssp             -TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred             -CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence             4564 3333221                         12678999997455555554 6789999998877776543

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=96.38  E-value=0.0031  Score=69.76  Aligned_cols=14  Identities=14%  Similarity=0.418  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHhhhh
Q 004885           52 LFEWWSVFWDIFIA   65 (725)
Q Consensus        52 L~eWw~~fwd~f~a   65 (725)
                      ..++|.++.+.+..
T Consensus       336 ~~~~~~~~~~~~~~  349 (449)
T 3iot_A          336 MSAFWYAVRTAVIN  349 (449)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34556666655543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.32  E-value=0.11  Score=53.25  Aligned_cols=144  Identities=10%  Similarity=0.045  Sum_probs=75.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCCe
Q 004885          566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVRVWDTENPDY  631 (725)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-------gtIrvWDl~~~~~  631 (725)
                      ++++++.|+.++     .+.+||+.+.+-...  +........++.+  ++.+++.|+.+       ..+.+||+.+..-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            677777887654     577888876543221  2111122222222  45566665542       3588899887642


Q ss_pred             eeE-EEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885          632 SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       632 ~l~-~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      ... .+.........+.+  + ..+++.|+.+     ..|.+||+.+.+....-..  ...-..++.. ++..++.|+.+
T Consensus       186 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~  261 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD  261 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence            111 11111111222222  3 4577777654     3699999998765543322  1111223222 44566666654


Q ss_pred             -----CeEEEEECCCCe
Q 004885          704 -----NYISILDVETQV  715 (725)
Q Consensus       704 -----g~V~IwDl~tg~  715 (725)
                           ..|.+||+++.+
T Consensus       262 ~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence                 359999998874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.28  E-value=0.31  Score=52.25  Aligned_cols=144  Identities=10%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             CCeEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCC--e--EEEEeccC-CCCeEEEEEcCCCCEEEEEeC-------
Q 004885          556 SKVESCHFSP--DGK-LLATGGH---DKKAVLWCTESF--T--VKSTLEEH-TQWITDVRFSPSLSRLATSSA-------  617 (725)
Q Consensus       556 ~~V~~i~fSp--dg~-~LaSgs~---Dg~V~IWdl~~~--~--~i~~l~~H-~~~V~~IafsPd~~~Lasgs~-------  617 (725)
                      .....|.+.+  ++. +|+++..   +.+|.||+++..  .  .+..+.+. -...+++++.+++.+.++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            3455666654  454 4555532   467888877542  2  23334332 245789999999987777541       


Q ss_pred             ----------CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCC
Q 004885          618 ----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSG  684 (725)
Q Consensus       618 ----------DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-~~~--v~~~~~~~~  684 (725)
                                .+.|..+|.  +.  +..+...-...+.|+|+|+++.++++-+..+.|+.||+.. ++.  ...+...+.
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~  267 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL  267 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred             ccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence                      134444444  33  2333333356799999999998888887888999999863 332  234433566


Q ss_pred             eEEEEEec-CCCEEEEEEcC
Q 004885          685 ATQMRFQP-RLGRILAAAIE  703 (725)
Q Consensus       685 V~sv~fsp-dg~~Lla~s~D  703 (725)
                      .-.+++++ +|..++++..+
T Consensus       268 PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESC
T ss_pred             CceEEEeCCCCcEEEEecCC
Confidence            78899999 58877766544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.27  E-value=1.5  Score=50.42  Aligned_cols=157  Identities=6%  Similarity=-0.046  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~  632 (725)
                      .....+++...+. ++++-+..+.|.+.+++.......+...-....+|+++|...+|+.+..  ...|...+++... .
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~-~  470 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD-R  470 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-c
Confidence            4577889987444 4455556788999998765433333333466889999997555655543  3567777776443 2


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CCeEEEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILD  710 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg~V~IwD  710 (725)
                      .......-.....|++++++..++++-...+.|..+++........+.. -.....|++..+  +|+.+.. .+.|...|
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~  548 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVH  548 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEE
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEE
Confidence            2233333456889999998777777666678899999875433322222 233456666543  6666654 56788888


Q ss_pred             CCCCe
Q 004885          711 VETQV  715 (725)
Q Consensus       711 l~tg~  715 (725)
                      ..+|.
T Consensus       549 k~~g~  553 (619)
T 3s94_A          549 KRSAE  553 (619)
T ss_dssp             SSSCC
T ss_pred             cCCCc
Confidence            88873

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.27  E-value=0.4  Score=53.04  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecc------CCCCeEEEEEcCC---CCEEEEEeC-------
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA-------  617 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l~~------H~~~V~~IafsPd---~~~Lasgs~-------  617 (725)
                      ....+|+|.|+|+++++-...+.|++++..++...  ..+..      ....+..|+|+|+   +.+|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999997776544457888876555432  22321      2356779999995   555555432       


Q ss_pred             ------CCeEEEEECCCCC----e--ee-EEEe-cCCCCeEEEEEccCCCeEEEEEe
Q 004885          618 ------DRTVRVWDTENPD----Y--SL-RTFT-GHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       618 ------DgtIrvWDl~~~~----~--~l-~~~~-~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                            ...|..|++....    .  .+ ..+. ........|+|.|+|. |+++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                  1355556654321    0  11 1121 1123478999999997 555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.14  E-value=0.25  Score=52.78  Aligned_cols=148  Identities=11%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEe----ccCCCCeEEEEEcCC---CCEEEEE---eC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---SA  617 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i--~~l----~~H~~~V~~IafsPd---~~~Lasg---s~  617 (725)
                      .+...-..-..|+|.|||.++++--..|.|++++..+++..  ..+    .........|+|+|+   +.+|+.+   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33334455789999999997777655899999987655432  222    123456899999995   4455443   23


Q ss_pred             CCeEEEEECCCC----------CeeeEEEe-cCCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC
Q 004885          618 DRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG  673 (725)
Q Consensus       618 DgtIrvWDl~~~----------~~~l~~~~-~h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~  673 (725)
                      +..|.-|.+...          +..+..+. ........|.|.|+|. |+++.+.             .|.|.-++....
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            456666666541          11111221 1112346799999987 5555431             244544555421


Q ss_pred             e-------eEEEEe-cCCCeEEEEEecCCCEEE
Q 004885          674 S-------CAGVFK-CQSGATQMRFQPRLGRIL  698 (725)
Q Consensus       674 ~-------~v~~~~-~~~~V~sv~fspdg~~Ll  698 (725)
                      -       -...+. +......++|+|+|..++
T Consensus       185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~  217 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFA  217 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEE
T ss_pred             ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEE
Confidence            0       011222 234467899999855443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.11  E-value=0.13  Score=54.97  Aligned_cols=143  Identities=12%  Similarity=0.064  Sum_probs=81.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec---cCCCCeEEEEEcCC---CCEEEEEeC----C----Ce
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT  620 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~-~i~~l~---~H~~~V~~IafsPd---~~~Lasgs~----D----gt  620 (725)
                      ..-..++|.|+|++ +++..++.|+++|. +++ .+..+.   ........|+|+|+   +..|+++..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45789999999984 44566799999973 444 222211   12356889999997   556655443    3    56


Q ss_pred             EEEEECCCCC------eee-EEEec-CCCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCC------
Q 004885          621 VRVWDTENPD------YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------  673 (725)
Q Consensus       621 IrvWDl~~~~------~~l-~~~~~-h~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~------  673 (725)
                      |..|+.....      ..+ ..+.. .......|+|.|+|. |+++.+.             .|.|.-+|....      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            7778776541      011 11221 111246799999997 5555332             245655665421      


Q ss_pred             ---eeEEEEecCCCeEEEEEecCCCEEEEEEc
Q 004885          674 ---SCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       674 ---~~v~~~~~~~~V~sv~fspdg~~Lla~s~  702 (725)
                         ..+... .......|+|+|+.+.|+++..
T Consensus       186 f~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          186 FPNSPIWSY-GHRNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             STTCCEEEE-CCSCCCEEEECTTTCCEEEEEC
T ss_pred             CCCCcEEEE-ccCCcceEEEeCCCCCEEEEec
Confidence               112221 2345678999994444555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.99  E-value=0.18  Score=51.80  Aligned_cols=142  Identities=13%  Similarity=0.096  Sum_probs=75.9

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCC
Q 004885          566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTEN  628 (725)
Q Consensus       566 dg~~LaSgs~D------g~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~---------DgtIrvWDl~~  628 (725)
                      ++++++.|+.+      ..+.+||..+.+-...  +........++.+  ++.+++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67777888765      4688999877543221  1111111222222  4555566553         34588899987


Q ss_pred             CCeeeEEEecC--CCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEE
Q 004885          629 PDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       629 ~~~~l~~~~~h--~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Ll  698 (725)
                      ..  ...+...  ...-.+++.. + ..+++.|+.+     ..|.+||+.+.+....-..   ......+.+  ++..++
T Consensus       179 ~~--W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  252 (306)
T 3ii7_A          179 ET--WTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYV  252 (306)
T ss_dssp             TE--EEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEE
T ss_pred             Ce--EEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEE
Confidence            65  2222211  1111122222 3 4477676543     3589999988765433221   112222323  445666


Q ss_pred             EEEcC-----CeEEEEECCCCe
Q 004885          699 AAAIE-----NYISILDVETQV  715 (725)
Q Consensus       699 a~s~D-----g~V~IwDl~tg~  715 (725)
                      .++.+     ..|.+||+++.+
T Consensus       253 ~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          253 LAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EECBCSSSBCCEEEEEETTTTE
T ss_pred             EeCcCCCeeeeeEEEEcCCCCe
Confidence            66643     579999998863

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.85  E-value=0.53  Score=49.98  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             CCCeEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCCCe-----EE-EEec---cCCCCeEEEEEcCCCCEEEEEe
Q 004885          555 TSKVESCHFSPD---GKLLATGGH-D-----KKAVLWCTESFT-----VK-STLE---EHTQWITDVRFSPSLSRLATSS  616 (725)
Q Consensus       555 ~~~V~~i~fSpd---g~~LaSgs~-D-----g~V~IWdl~~~~-----~i-~~l~---~H~~~V~~IafsPd~~~Lasgs  616 (725)
                      ......|+|+|+   +..|+++.. +     ..|..|+.....     .+ ..+.   +.......|+|.|++.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            346889999998   555554433 2     578888876431     11 1232   1112346899999997666543


Q ss_pred             C-------------CCeEEEEECCCC------------CeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          617 A-------------DRTVRVWDTENP------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       617 ~-------------DgtIrvWDl~~~------------~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      .             .+.|..+|.+..            ........++. ....++|+|+...++++-.
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence            2             145666665430            00111222343 3677899994333665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.80  E-value=0.16  Score=54.18  Aligned_cols=144  Identities=13%  Similarity=0.089  Sum_probs=81.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcCC---CCEEEEEeC--------C
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA--------D  618 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsPd---~~~Lasgs~--------D  618 (725)
                      .-..|+|.|+|++|+++...+.|++++.+ +.....+       .........|+|+|+   +.+|+.+..        .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            46899999999934455578999999853 3321111       112345789999996   555555432        2


Q ss_pred             CeEEEEECCCCCe---eeE-EEecC------CCCeEEEEEccCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 004885          619 RTVRVWDTENPDY---SLR-TFTGH------STTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS-  674 (725)
Q Consensus       619 gtIrvWDl~~~~~---~l~-~~~~h------~~~V~sl~fsP~g~~llaSgs~-------------Dg~I~IwDl~t~~-  674 (725)
                      ..|..|++.....   ... .+...      ......|.|.|+|. |+++.+.             .|.|.-+|.+..- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            3566666654310   111 11111      11235799999985 6655432             2457667765320 


Q ss_pred             -----------eEEEEe-cCCCeEEEEEecCCCEEEEEEc
Q 004885          675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       675 -----------~v~~~~-~~~~V~sv~fspdg~~Lla~s~  702 (725)
                                 ....+. .......++|+|..+.|+++..
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence                       112222 2345789999995456666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.67  E-value=0.57  Score=47.75  Aligned_cols=145  Identities=8%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCe-----EEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC
Q 004885          566 DGKLLATGGHD-----KKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD  630 (725)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWdl~~~~-----~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~  630 (725)
                      ++++++.|+.+     ..+.+||..+.+     .+..+.........+.+  ++.+++.|+.+     ..+.+||+.+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777777765     468999987644     22222221222222333  55666666543     368889988765


Q ss_pred             eee-EEEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885          631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       631 ~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~  702 (725)
                      -.. ............+.+  + ..+++.|+.+     ..|.+||+.+.+....-..  .....+++.. ++..++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC
Confidence            211 111111111222222  3 4477777644     4589999988766544222  1111222222 4455666655


Q ss_pred             C-----CeEEEEECCCCeE
Q 004885          703 E-----NYISILDVETQVC  716 (725)
Q Consensus       703 D-----g~V~IwDl~tg~~  716 (725)
                      +     ..|.+||+++.+-
T Consensus       216 ~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEE
T ss_pred             CCCcccceEEEEeCCCCcE
Confidence            3     5699999988743

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.56  E-value=0.36  Score=49.38  Aligned_cols=142  Identities=9%  Similarity=0.080  Sum_probs=75.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeee
Q 004885          566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL  633 (725)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~Dg-----tIrvWDl~~~~~~l  633 (725)
                      ++++++.|+.+     ..+.+||..+.+-..  .+.........+.+  ++.+++.|+.++     .+.+||+.+..  .
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE--W  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence            67777777755     358889987654322  12211122222223  566667776553     57788887754  2


Q ss_pred             EEEec---CCCCeEEEEEccCCCeEEEEEeCC-------CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885          634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-------g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s  701 (725)
                      ..+..   .......+.+  + ..+++.|+.+       ..+.+||+.+.+....-..  .....+++.. ++..++.|+
T Consensus       137 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  212 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV--G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGG  212 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eecCCCCCcccCceEEEE--C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECC
Confidence            22211   1111122222  3 3466666532       3588999988765543222  1112223332 445666666


Q ss_pred             cC-----CeEEEEECCCCe
Q 004885          702 IE-----NYISILDVETQV  715 (725)
Q Consensus       702 ~D-----g~V~IwDl~tg~  715 (725)
                      .+     +.|.+||+++.+
T Consensus       213 ~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCC
Confidence            53     469999998864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.53  E-value=0.35  Score=49.61  Aligned_cols=142  Identities=7%  Similarity=0.050  Sum_probs=76.4

Q ss_pred             CCCEEEEEeCC----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCeee
Q 004885          566 DGKLLATGGHD----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL  633 (725)
Q Consensus       566 dg~~LaSgs~D----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl~~~~~~l  633 (725)
                      ++++++.|+.+    ..+.+||..+.+-..  .+.........+.+  ++.+++.|+.+      ..+.+||+.+..-  
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW--  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--
Confidence            66777788765    578889987754322  22211222222333  56666777654      4588899887652  


Q ss_pred             EEEec---CCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885          634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~---------Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla  699 (725)
                      ..+..   .......+.+  + ..+++.|+.         -..+.+||+.+.+....-..  ...-.+++.. ++..++.
T Consensus       131 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~  206 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVEA--N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAV  206 (306)
T ss_dssp             EEECCCSSCCBSCEEEEE--T-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE
T ss_pred             EeCCCCcCCcceeEEEEE--C-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEE
Confidence            22211   1111122222  3 346666653         34588999998765443222  1112233333 4455555


Q ss_pred             EEcC-----CeEEEEECCCCe
Q 004885          700 AAIE-----NYISILDVETQV  715 (725)
Q Consensus       700 ~s~D-----g~V~IwDl~tg~  715 (725)
                      |+.+     ..|.+||+.+.+
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTE
T ss_pred             eCCCCCCCCceEEEeeCCCCc
Confidence            5543     468999998764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.45  E-value=0.78  Score=48.80  Aligned_cols=155  Identities=12%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             CCeEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC-------eEE-EEecc-CCCCeEEEEEcCCCCEEEEE
Q 004885          556 SKVESCHFSPD---GKLLATGGH----D----KKAVLWCTESF-------TVK-STLEE-HTQWITDVRFSPSLSRLATS  615 (725)
Q Consensus       556 ~~V~~i~fSpd---g~~LaSgs~----D----g~V~IWdl~~~-------~~i-~~l~~-H~~~V~~IafsPd~~~Lasg  615 (725)
                      .....|+|+|+   +..|+++..    +    ..|..|+....       +.+ ..+.. .......|+|.|++.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45889999997   455544433    3    56777876543       111 11221 11234679999999866664


Q ss_pred             eC-------------CCeEEEEECCCC--------CeeeEEEecCCCCeEEEEEcc-CCCeEEEEEeCCC---cEEEEEC
Q 004885          616 SA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNS---EIRYWSI  670 (725)
Q Consensus       616 s~-------------DgtIrvWDl~~~--------~~~l~~~~~h~~~V~sl~fsP-~g~~llaSgs~Dg---~I~IwDl  670 (725)
                      +.             .+.|..++.+..        . ......++.. ...++|+| ++. ++++-....   .|.+..-
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~-~~i~a~G~rn-p~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~  229 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-SPIWSYGHRN-PQGIDWHRASGV-MVATEHGPVGHDEVNIILK  229 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT-CCEEEECCSC-CCEEEECTTTCC-EEEEECCSSSCCEEEEECT
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC-CcEEEEccCC-cceEEEeCCCCC-EEEEecCCCCCcEEEEecC
Confidence            32             245655555432        1 1122234443 56899999 555 665543221   2443321


Q ss_pred             CC--------C--------eeEEEE-ecCCCeEEEEEe-------cCCCEEEEEEcCCeEEEEECCC
Q 004885          671 NN--------G--------SCAGVF-KCQSGATQMRFQ-------PRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       671 ~t--------~--------~~v~~~-~~~~~V~sv~fs-------pdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      -.        +        .++..+ ..+..+..++|.       .+|..+++.-..+.|..++++.
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            10        0        122233 124457778873       4544444444456788888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.19  E-value=0.36  Score=49.77  Aligned_cols=142  Identities=11%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeee
Q 004885          566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (725)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~~~~l  633 (725)
                      ++++++.|+.+     ..+.+||..+.+-..  .+........++.+  ++.+++.|+.+     ..+.+||+.+..-  
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW--  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--
Confidence            67777777644     368889987654222  12111122223333  55666666654     4588899877541  


Q ss_pred             EEEec---CCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC
Q 004885          634 RTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE  703 (725)
Q Consensus       634 ~~~~~---h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D  703 (725)
                      ..+..   .......+.+  + ..+++.|+.+     ..|.+||+.+.+....-..  .....+++.. ++..++.|+.+
T Consensus       197 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  272 (308)
T 1zgk_A          197 RMITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYD  272 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             eeCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcC
Confidence            22111   1111222333  3 4577777654     4699999998765543221  1112233333 44566666643


Q ss_pred             -----CeEEEEECCCCe
Q 004885          704 -----NYISILDVETQV  715 (725)
Q Consensus       704 -----g~V~IwDl~tg~  715 (725)
                           ..|.+||+++.+
T Consensus       273 ~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSCBCCEEEEEETTTTE
T ss_pred             CCcccceEEEEcCCCCE
Confidence                 568999998874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.14  E-value=2.7  Score=46.17  Aligned_cols=156  Identities=10%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             CCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeC---CCeEE
Q 004885          556 SKVESCHFSPDGKLLATGG-------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSA---DRTVR  622 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs-------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---~~Lasgs~---DgtIr  622 (725)
                      ..|..-..+++.++++..+       -.|.+-+|.++.. .-..+++|......+.+.-+.   ..++.+..   .+.++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            4577778888999876443       2467788988653 345778887766655554321   23444433   37899


Q ss_pred             EEECCCC--C------eeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEE
Q 004885          623 VWDTENP--D------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF  690 (725)
Q Consensus       623 vWDl~~~--~------~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~f  690 (725)
                      |-++...  .      ..+..+..   -.+.-.++..++.-. ++..-..-|.|++||+.++.|+..-+. ...|...+-
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence            9998654  1      11111111   124456778888766 555677789999999999999988775 556666666


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCC
Q 004885          691 QPRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       691 spdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      ....+-++.....|.|.-..+..
T Consensus       309 ~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          309 HEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             ETTTTEEEEEETTCEEEEEEECT
T ss_pred             cCCCCcEEEEccCceEEEEEEcc
Confidence            66556666666777766555543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.04  E-value=0.35  Score=50.55  Aligned_cols=141  Identities=7%  Similarity=0.013  Sum_probs=86.8

Q ss_pred             EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe--C--CCeE
Q 004885          560 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV  621 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~D--------------g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs--~--DgtI  621 (725)
                      +--+++++++|+-+...              ..|+..+++..+... +..  ..  +..|++++.+|+-..  .  +..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34457788888766543              367777777654332 221  22  236777888887665  2  3455


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      ..-+++...  ...+..+..    ..|+++++.++.+......|.+.++..+.....+.  +... ..++|++++|+...
T Consensus       132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~  202 (302)
T 3s25_A          132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMD  202 (302)
T ss_dssp             EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEE
T ss_pred             EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEE
Confidence            556666433  444444432    45678888888776556789999998776554443  2333 34668889888776


Q ss_pred             cC--CeEEEEECCCC
Q 004885          702 IE--NYISILDVETQ  714 (725)
Q Consensus       702 ~D--g~V~IwDl~tg  714 (725)
                      .+  ..|..-++..+
T Consensus       203 ~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          203 VNRDNAIVHVNINNP  217 (302)
T ss_dssp             GGGTTEEEEECSSSC
T ss_pred             cCCCcEEEEEECCCC
Confidence            53  35666666654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.89  E-value=1  Score=45.09  Aligned_cols=141  Identities=12%  Similarity=0.011  Sum_probs=78.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~------i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~  628 (725)
                      .+.+++|+|+|.+.++  .+|.++-.+..+...      -..+  .+-. ...++.|+|++.+.++  .||.|.-|+-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5779999999997776  677777766544111      1111  0111 1578999999988777  469888777633


Q ss_pred             CCee-----eEEEe-cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee------EEEEe-cC-CCeEEEEEecCC
Q 004885          629 PDYS-----LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------AGVFK-CQ-SGATQMRFQPRL  694 (725)
Q Consensus       629 ~~~~-----l~~~~-~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~------v~~~~-~~-~~V~sv~fspdg  694 (725)
                      ....     -..+. +--..+..|.|.|+|. |++..  |+.++-+...++..      ...+. .. ....-+.|++++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2200     01111 1113579999999997 55444  77764433332211      11111 11 123446688886


Q ss_pred             CEEEEEEcCCeEE
Q 004885          695 GRILAAAIENYIS  707 (725)
Q Consensus       695 ~~Lla~s~Dg~V~  707 (725)
                      ..+++.  ++.|.
T Consensus       194 ~l~~v~--~g~~Y  204 (236)
T 1tl2_A          194 TLFGVQ--GGKFY  204 (236)
T ss_dssp             CEEEEE--TTEEE
T ss_pred             cEEEEe--CCeEE
Confidence            544443  66443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.75  E-value=0.4  Score=50.34  Aligned_cols=57  Identities=9%  Similarity=-0.002  Sum_probs=29.8

Q ss_pred             cEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEE
Q 004885          664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKL  720 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~D------g~V~IwDl~tg~~v~~l  720 (725)
                      .+.+||+.+.+....-.. .......++..++..++.|+.+      ..|.++++++++.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            578999987655443222 1111122233455777778764      24777799888655543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.70  E-value=0.41  Score=49.41  Aligned_cols=143  Identities=10%  Similarity=0.034  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCC
Q 004885          566 DGKLLATGGHD--------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENP  629 (725)
Q Consensus       566 dg~~LaSgs~D--------g~V~IWdl~~~~~i--~~l~~H~~~V~~IafsPd~~~Lasgs~-D-----gtIrvWDl~~~  629 (725)
                      ++++++.|+.+        ..+.+||..+.+-.  ..+........++.  -++++++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56777777643        45889998775422  11211111122222  24556666665 2     36888998876


Q ss_pred             CeeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEE
Q 004885          630 DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILA  699 (725)
Q Consensus       630 ~~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg-----~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla  699 (725)
                      .  -..+..   ......++.+  + ..+++.|+.++     .+.+||+.+.+....-..  .....+++.. ++..++.
T Consensus       176 ~--W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~  249 (315)
T 4asc_A          176 E--WKELAPMQTARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAI  249 (315)
T ss_dssp             E--EEECCCCSSCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE
T ss_pred             e--EEECCCCCCchhceEEEEE--C-CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE-CCEEEEE
Confidence            4  122211   1111222222  3 34777776544     588999988765544322  1112223333 4466666


Q ss_pred             EEcC--------------CeEEEEECCCCeE
Q 004885          700 AAIE--------------NYISILDVETQVC  716 (725)
Q Consensus       700 ~s~D--------------g~V~IwDl~tg~~  716 (725)
                      |+.+              ..|.+||+++.+-
T Consensus       250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          250 GGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             CCccccCcCCccccccccCcEEEecCCCChh
Confidence            6653              3478999988743

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=94.60  E-value=0.014  Score=64.46  Aligned_cols=7  Identities=43%  Similarity=0.952  Sum_probs=2.6

Q ss_pred             HHHHHhh
Q 004885           57 SVFWDIF   63 (725)
Q Consensus        57 ~~fwd~f   63 (725)
                      ..+|+++
T Consensus       337 ~~~~~~~  343 (449)
T 3iot_A          337 SAFWYAV  343 (449)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.35  E-value=0.82  Score=46.99  Aligned_cols=144  Identities=13%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             CCCEEEEEeC----C-----CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 004885          566 DGKLLATGGH----D-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP  629 (725)
Q Consensus       566 dg~~LaSgs~----D-----g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D-----gtIrvWDl~~~  629 (725)
                      ++++++.|+.    +     ..+.+||..+.+-..  .+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5677777765    2     468889987654221  11111122222333  55666666543     35788898775


Q ss_pred             Ceee-EEEecCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEE
Q 004885          630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       630 ~~~l-~~~~~h~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s  701 (725)
                      .-.. ..+.........+.+  + ..+++.|+.+     ..+.+||+.+.+....-..  .....+++.. ++..++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--N-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--C-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence            4111 111111111222233  3 4577777644     4589999988765433221  1112223333 445566665


Q ss_pred             cC-----CeEEEEECCCCe
Q 004885          702 IE-----NYISILDVETQV  715 (725)
Q Consensus       702 ~D-----g~V~IwDl~tg~  715 (725)
                      .+     ..|.+||+++.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCc
Confidence            54     569999998864

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.22  E-value=1.7  Score=44.59  Aligned_cols=148  Identities=7%  Similarity=-0.033  Sum_probs=75.2

Q ss_pred             EEEcCCCCEEEEEeC----C-------CcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC--------C
Q 004885          561 CHFSPDGKLLATGGH----D-------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--------R  619 (725)
Q Consensus       561 i~fSpdg~~LaSgs~----D-------g~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~D--------g  619 (725)
                      .....++++++.|+.    +       ..+.+||..+.+-..  .+.........+.+  ++..++.|+.+        .
T Consensus        40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred             EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence            333457888888874    1       127788887654321  11111111112222  45556666532        3


Q ss_pred             eEEEEECCCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeC-C-----CcEEEEECCCCeeEEEEec--CCCeEEEE
Q 004885          620 TVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDN-N-----SEIRYWSINNGSCAGVFKC--QSGATQMR  689 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~-D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~  689 (725)
                      .+.+||+.+..  ...+..  ....-.+++. -+ ..+++.|+. +     ..+.+||+.+.+....-..  .....+++
T Consensus       118 ~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  193 (315)
T 4asc_A          118 SVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT  193 (315)
T ss_dssp             CEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             eEEEECCCCCc--EeECCCCCCcccceeEEE-EC-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence            58889988754  122111  1111112222 23 347777765 2     3689999988765433221  11122222


Q ss_pred             EecCCCEEEEEEcCC-----eEEEEECCCCe
Q 004885          690 FQPRLGRILAAAIEN-----YISILDVETQV  715 (725)
Q Consensus       690 fspdg~~Lla~s~Dg-----~V~IwDl~tg~  715 (725)
                      .. ++..++.|+.++     .|.+||+++.+
T Consensus       194 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          194 VH-DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            22 456666776643     58999998874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.13  E-value=0.51  Score=58.76  Aligned_cols=159  Identities=14%  Similarity=0.228  Sum_probs=102.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccC----CCCeEEEEEcCCCCEEEEEe-------CCCeEEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH----TQWITDVRFSPSLSRLATSS-------ADRTVRV  623 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l~~H----~~~V~~IafsPd~~~Lasgs-------~DgtIrv  623 (725)
                      ..|..-.|-.+. .|+..+ +..|+.|++.. ..++..|..|    ...|..-..+++.++++..+       -.|.+-+
T Consensus       106 e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          106 DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            457777886444 444443 56899999974 4555556555    34567777788888876543       2578889


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEc--cCCCeEEEEEeC---CCcEEEEECCCC---ee------EEEEe-c---CCCe
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDN---NSEIRYWSINNG---SC------AGVFK-C---QSGA  685 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fs--P~g~~llaSgs~---Dg~I~IwDl~t~---~~------v~~~~-~---~~~V  685 (725)
                      |.++.+.  ...+.||.+.-..+...  +....++|.+..   .+.++|.++...   ..      +..+. .   ..-.
T Consensus       184 yS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp  261 (1630)
T 1xi4_A          184 YSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (1630)
T ss_pred             eeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence            9988654  46666776544433332  222335554432   368999998542   11      11111 1   2335


Q ss_pred             EEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      .++..++..+.++..+.-|.|++||++||.|+.
T Consensus       262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             eEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            677888888888889999999999999998775

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.08  E-value=7.2  Score=41.39  Aligned_cols=151  Identities=15%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-  551 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  551 (725)
                      .....+-..-..+.|.|++.               ++++-...+.|+++...++.                 ...+..+ 
T Consensus        25 ~~va~gL~~P~~ia~~pdG~---------------llVter~~G~I~~v~~~~g~-----------------~~~v~~~~   72 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGD---------------LLVSSRDEATITRVDAKTGR-----------------KTELGEVP   72 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSC---------------EEEEETTTCEEEEECTTTCC-----------------EEEEEECT
T ss_pred             EEeecCCCCceEEEEcCCCc---------------EEEEEecCCEEEEEECCCCc-----------------EeeecccC
Confidence            34445555667888888875               55554447888777321110                 0111111 


Q ss_pred             ---cCCCCCeEEEEEcCC---CCEEEEE---eCCCcEEEEECCC----------CeEEE-Eec-cCCCCeEEEEEcCCCC
Q 004885          552 ---PASTSKVESCHFSPD---GKLLATG---GHDKKAVLWCTES----------FTVKS-TLE-EHTQWITDVRFSPSLS  610 (725)
Q Consensus       552 ---~~H~~~V~~i~fSpd---g~~LaSg---s~Dg~V~IWdl~~----------~~~i~-~l~-~H~~~V~~IafsPd~~  610 (725)
                         .........|+|+|+   +.+|+++   ..+..|.-|.+..          .+.+. .+. ........|+|.||+.
T Consensus        73 ~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~  152 (347)
T 3das_A           73 GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM  152 (347)
T ss_dssp             TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC
T ss_pred             ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC
Confidence               123456889999995   3444432   2345666666543          12221 222 1112346799999998


Q ss_pred             EEEEEeC-------------CCeEEEEECCCC--------CeeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885          611 RLATSSA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       611 ~Lasgs~-------------DgtIrvWDl~~~--------~~~l~~~~~h~~~V~sl~fsP~g~~llaS  658 (725)
                      ++++.+.             .+.|.-.+.+..        . ......+|.. ...++|+|+|. ++++
T Consensus       153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~-~~i~a~G~RN-p~Gla~dp~G~-L~~~  218 (347)
T 3das_A          153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG-SPVYSYGHRN-VQGLAWDDKQR-LFAS  218 (347)
T ss_dssp             EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT-CCEEEBCCSB-CCEEEECTTCC-EEEE
T ss_pred             EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC-CeEEeeCCCC-cceEEECCCCC-EEEE
Confidence            7777542             244444455432        1 1122335543 56899999876 5543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.00  E-value=1.1  Score=50.52  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCC------Ce-------eEEEEecCCCeEEEEEecCCCEEEEEE-cCCeE
Q 004885          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GS-------CAGVFKCQSGATQMRFQPRLGRILAAA-IENYI  706 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t------~~-------~v~~~~~~~~V~sv~fspdg~~Lla~s-~Dg~V  706 (725)
                      .....+.++|+|+++++++-.+.+|.|+|++.      .+       .+...+...+....+|+++| ..++.- -|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence            44577899999999998888899999999973      11       13334446778999999997 544444 59999


Q ss_pred             EEEECCCC----------eEEEEEeCC
Q 004885          707 SILDVETQ----------VCRLKLQVS  723 (725)
Q Consensus       707 ~IwDl~tg----------~~v~~l~GH  723 (725)
                      ..|++...          .++.++.-|
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~  428 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVH  428 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccc
Confidence            99998763          566666544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.85  E-value=1.1  Score=46.14  Aligned_cols=144  Identities=6%  Similarity=0.044  Sum_probs=73.6

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCC
Q 004885          566 DGKLLATGGHD-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPD  630 (725)
Q Consensus       566 dg~~LaSgs~D-------g~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~------DgtIrvWDl~~~~  630 (725)
                      ++++++.|+.+       ..+.+||..+.+-...  +........++.  .++.+++.|+.      -..+.+||+.+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            67777777764       2578888876543221  111111111222  25566666653      2358899998765


Q ss_pred             eeeEEEec--C-CCCeEEEEEccCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEE
Q 004885          631 YSLRTFTG--H-STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       631 ~~l~~~~~--h-~~~V~sl~fsP~g~~llaSgs~D-----g~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~  700 (725)
                      -  ..+..  . .....++.+  + ..+++.|+.+     ..|.+||+.+.+....-..  .....+++.. ++..++.|
T Consensus       187 W--~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G  260 (318)
T 2woz_A          187 W--KDLAPMKTPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL-AGSLYAIG  260 (318)
T ss_dssp             E--EEECCCSSCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             E--EECCCCCCCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE-CCEEEEEC
Confidence            2  22211  1 111122222  3 3477676543     2577899988765433221  1111223322 44556666


Q ss_pred             EcC--------------CeEEEEECCCCeEE
Q 004885          701 AIE--------------NYISILDVETQVCR  717 (725)
Q Consensus       701 s~D--------------g~V~IwDl~tg~~v  717 (725)
                      +.+              ..|.+||+++.+-.
T Consensus       261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          261 GFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             CBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             CeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            543              46889999987543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.76  E-value=2.4  Score=43.49  Aligned_cols=146  Identities=8%  Similarity=0.069  Sum_probs=73.5

Q ss_pred             EcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-------CeEE
Q 004885          563 FSPDGKLLATGGH----DK-------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVR  622 (725)
Q Consensus       563 fSpdg~~LaSgs~----Dg-------~V~IWdl~~~~~i~~--l~~H~~~V~~IafsPd~~~Lasgs~D-------gtIr  622 (725)
                      ...++++++.|+.    ++       .+.+||..+.+-...  +.........+.+  ++.+++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            3457788888873    12       177888776543221  1111111222222  55666667653       2577


Q ss_pred             EEECCCCCeeeEEEecCCCC--eEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEec--CCCeEEEEEec
Q 004885          623 VWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQP  692 (725)
Q Consensus       623 vWDl~~~~~~l~~~~~h~~~--V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp  692 (725)
                      +||+.+..  ...+......  -.+++. .+ ..+++.|+.      -..+.+||+.+.+....-..  .....+++.. 
T Consensus       131 ~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  205 (318)
T 2woz_A          131 CYDPVAAK--WSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-  205 (318)
T ss_dssp             EEETTTTE--EEEECCCSSCEESCEEEE-ET-TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             EEeCCCCC--EeECCCCCCcccccEEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-
Confidence            88887654  2222111111  011222 23 346666653      23599999998765543222  1112233333 


Q ss_pred             CCCEEEEEEcC-----CeEEEEECCCCe
Q 004885          693 RLGRILAAAIE-----NYISILDVETQV  715 (725)
Q Consensus       693 dg~~Lla~s~D-----g~V~IwDl~tg~  715 (725)
                      ++..++.|+.+     ..|.+||+++.+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            44566666543     457899988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.58  E-value=2.1  Score=49.94  Aligned_cols=149  Identities=12%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeEE
Q 004885          566 DGKLLATGGHDK------KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  635 (725)
Q Consensus       566 dg~~LaSgs~Dg------~V~IWdl~~~~--~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dg--tIrvWDl~~~~~~l~~  635 (725)
                      ++++++.|+.++      .+.+||..+.+  .+..+...... .+++...++.+++.|+.++  .+.+||+.+..-  ..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W--~~  527 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF--KD  527 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEE--EE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCce--EE
Confidence            677778877543      57888887743  22222211111 2233323777888877654  689999987652  22


Q ss_pred             Eec------CCCCeEEEEEccCCCeEEEEEeC--C-----CcEEEEECCCCe------eEEEEe--c-CCCeEEEEEecC
Q 004885          636 FTG------HSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK--C-QSGATQMRFQPR  693 (725)
Q Consensus       636 ~~~------h~~~V~sl~fsP~g~~llaSgs~--D-----g~I~IwDl~t~~------~v~~~~--~-~~~V~sv~fspd  693 (725)
                      +..      ......++.+......+++.|+.  +     ..|.+||+.+..      ......  . ...-.+++...+
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~  607 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP  607 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred             ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence            211      12222335556553557777765  2     358899998877      222222  1 111223333443


Q ss_pred             CCEEEEEEc--------CCeEEEEECCCCeEE
Q 004885          694 LGRILAAAI--------ENYISILDVETQVCR  717 (725)
Q Consensus       694 g~~Lla~s~--------Dg~V~IwDl~tg~~v  717 (725)
                      +..++.|+.        ...|.+||+.+.+-.
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            566666664        246999999987543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.46  E-value=8.2  Score=40.65  Aligned_cols=102  Identities=7%  Similarity=-0.047  Sum_probs=53.8

Q ss_pred             CCeEEEEEcCC---CCEEEEEe-C-------CCcEEEEECCCC----eEEE-Eecc------CCCCeEEEEEcCCCCEEE
Q 004885          556 SKVESCHFSPD---GKLLATGG-H-------DKKAVLWCTESF----TVKS-TLEE------HTQWITDVRFSPSLSRLA  613 (725)
Q Consensus       556 ~~V~~i~fSpd---g~~LaSgs-~-------Dg~V~IWdl~~~----~~i~-~l~~------H~~~V~~IafsPd~~~La  613 (725)
                      .....|+|+|+   +.+|+++. .       ...|..|++...    .... .+..      .......|+|.|++.+++
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv  145 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFI  145 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEE
Confidence            45789999996   44444442 2       235666666432    1111 1211      111235799999996555


Q ss_pred             EEeC-------------CCeEEEEECCCCC------------eeeEEEecCCCCeEEEEEccCCCeEEEE
Q 004885          614 TSSA-------------DRTVRVWDTENPD------------YSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (725)
Q Consensus       614 sgs~-------------DgtIrvWDl~~~~------------~~l~~~~~h~~~V~sl~fsP~g~~llaS  658 (725)
                      +.+.             .+.|.-+|.+..-            .......++. ....++|+|....++++
T Consensus       146 ~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          146 ALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             EECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence            5433             2456666765320            0111223443 47889999943446654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.14  E-value=1.2  Score=46.51  Aligned_cols=51  Identities=12%  Similarity=0.068  Sum_probs=27.3

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCeEEE--Eec-cCCCCeEEEEEcCCCCEEEEEeCC
Q 004885          566 DGKLLATGGH-D---------KKAVLWCTESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSAD  618 (725)
Q Consensus       566 dg~~LaSgs~-D---------g~V~IWdl~~~~~i~--~l~-~H~~~V~~IafsPd~~~Lasgs~D  618 (725)
                      ++++++.|+. +         ..|.+||..+.+-..  .+. .......++.  .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5677777765 2         468889987754221  111 1111222232  456777777754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.05  E-value=1.9  Score=47.49  Aligned_cols=106  Identities=11%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eEEEec------CCCCeEEEEEccC---CCeEEEEEeC-----
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN-----  661 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~-l~~~~~------h~~~V~sl~fsP~---g~~llaSgs~-----  661 (725)
                      -...+.|+|.|+++++++-...+.|++++..++... +..+..      ....+..|+|+|+   +..++++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345679999999987776554457888887554421 222221      2356779999996   5667666542     


Q ss_pred             -------CCcEEEEECCCC--e---eEEE---Eec--CCCeEEEEEecCCCEEEEEEc
Q 004885          662 -------NSEIRYWSINNG--S---CAGV---FKC--QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       662 -------Dg~I~IwDl~t~--~---~v~~---~~~--~~~V~sv~fspdg~~Lla~s~  702 (725)
                             ...|.-|++...  .   ....   +..  ......|+|.|||..+++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   234666665422  1   1112   221  245789999999876666553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.99  E-value=1.9  Score=44.77  Aligned_cols=139  Identities=4%  Similarity=-0.060  Sum_probs=82.3

Q ss_pred             CCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEECCC
Q 004885          565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN  628 (725)
Q Consensus       565 pdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D--------------gtIrvWDl~~  628 (725)
                      .++.+|+...  .++.|+..+.+..... .+...  .  +--|++++.+|+-+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4667666554  3567777776554433 33221  1  23457788887766542              3677777776


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CC
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSg---s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      ..  ...+..  ..  +..|+++++.++.+-   ..+..|+..++...........  .+  ..|+++++.|+..+. ..
T Consensus        98 ~~--~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HG--STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CC--CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred             Cc--ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence            54  222321  11  236788888777665   3455677778875443333332  22  456788888887765 57


Q ss_pred             eEEEEECCCCeEEE
Q 004885          705 YISILDVETQVCRL  718 (725)
Q Consensus       705 ~V~IwDl~tg~~v~  718 (725)
                      .|.+.++..+....
T Consensus       168 ~Iy~~~l~g~~~~~  181 (302)
T 3s25_A          168 QLYRYDTASQSEAL  181 (302)
T ss_dssp             CEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEE
Confidence            89999988765443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.81  E-value=0.29  Score=52.13  Aligned_cols=141  Identities=7%  Similarity=-0.028  Sum_probs=82.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCCeeeEEEec----
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG----  638 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H-~~~V~~Iafs--Pd~~~Lasg--s~DgtIrvWDl~~~~~~l~~~~~----  638 (725)
                      .++++++.||.|+-+|..+|+.+..++.. ..++....-.  +.+..++.+  ..||.|..+|..++.. ...+..    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccccce
Confidence            47889999999999999999999988754 1222221111  112234433  5799999999887642 222211    


Q ss_pred             CCCCeEE---EEE-cc----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--------EEEEEe-----cCCCEE
Q 004885          639 HSTTVMS---LDF-HP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRI  697 (725)
Q Consensus       639 h~~~V~s---l~f-sP----~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V--------~sv~fs-----pdg~~L  697 (725)
                      ...++..   ... .+    . ...+++++.+|.+...|+++|+.+..+......        .|.+..     ..+..|
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             TTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence            1122221   000 00    2 235668888999999999999999999753211        111111     123567


Q ss_pred             EEEEcCCeEEEEE
Q 004885          698 LAAAIENYISILD  710 (725)
Q Consensus       698 la~s~Dg~V~IwD  710 (725)
                      +.+..+..|.+.+
T Consensus       169 ~ig~~~y~v~~~~  181 (339)
T 2be1_A          169 VIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEECEECC
T ss_pred             EEecceEEEEEEC
Confidence            7777777777655

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.75  E-value=18  Score=41.96  Aligned_cols=150  Identities=8%  Similarity=0.043  Sum_probs=91.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..|.++....++. |-.|+.+| +.+||..+.............|.++... ++ .|..++.+ -|.++|..+..  +..
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~--~~~  135 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRK--LTS  135 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCC--EEE
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCe--EEE
Confidence            4588888876664 55555555 7899987754322111122357776543 44 56666655 68889987655  333


Q ss_pred             Ee-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeEEEEEecCCCEEEEEEcCC
Q 004885          636 FT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       636 ~~-----~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      +.     .....|.++..+.++. +.+ +.. +.|..||..++........      ...|.++....++..|.+++. +
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~  211 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G  211 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCC-EEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred             eccCCCCcCCCeEEEEEEcCCCC-EEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence            31     1134688888888877 443 333 4588899887654322111      123888888887776666664 5


Q ss_pred             eEEEEECCCCeE
Q 004885          705 YISILDVETQVC  716 (725)
Q Consensus       705 ~V~IwDl~tg~~  716 (725)
                      .|..||..+++.
T Consensus       212 Gl~~~~~~~~~~  223 (758)
T 3ott_A          212 YLFQYFPSTGQI  223 (758)
T ss_dssp             EEEEEETTTTEE
T ss_pred             CCeEEcCCCCeE
Confidence            688899887753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.72  E-value=8.1  Score=47.77  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             CCEEEEEe----------CCCcEEEEECCCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          567 GKLLATGG----------HDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       567 g~~LaSgs----------~Dg~V~IWdl~~~~~i~~l-~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..+|++|.          ..|.|++|++...+..... +...++|++++-- +| +|++|- ..+|++|++...+ .++.
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~-~L~~  919 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK-ELRT  919 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS-CEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc-eEEE
Confidence            35888775          3478999998754432221 2346788888744 34 455443 5789999998765 2332


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw--Dl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      -..+...|..+.....++ +++.|+.-..|.++  +...++.+..-+.  ..+++++.|-.+ ..++.+..+|.|.++..
T Consensus       920 ~~~~~~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          920 ECNHYNNIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEEECCCSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEE
T ss_pred             EeeccccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEec
Confidence            111112233223323344 56677766666664  4445555444443  567899998765 57778888999998875


Q ss_pred             CC
Q 004885          712 ET  713 (725)
Q Consensus       712 ~t  713 (725)
                      ..
T Consensus       998 ~~  999 (1158)
T 3ei3_A          998 DS  999 (1158)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.17  E-value=0.69  Score=46.25  Aligned_cols=132  Identities=12%  Similarity=-0.011  Sum_probs=72.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe------EEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eE
Q 004885          567 GKLLATGGHDKKAVLWCTESFT------VKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LR  634 (725)
Q Consensus       567 g~~LaSgs~Dg~V~IWdl~~~~------~i~~l~~H--~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~----l~  634 (725)
                      ..+|++...| +|++=......      ....+ ++  =..+.+++|+|++.+.++  .++.+.-.+..+....    ..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666667 65554433322      11122 22  236789999999886666  6776665555432200    01


Q ss_pred             EEecCC--CCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE------EEEec--CCCeEEEEEecCCCEEEEEEcCC
Q 004885          635 TFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA------GVFKC--QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       635 ~~~~h~--~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v------~~~~~--~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      +..+..  ..-.++.|+|+|. |+++  .||.|+-++-.+...-      ..+..  =..+..|.|.|+|...++ . |+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-~-dg  154 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-H-GQ  154 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-E-TT
T ss_pred             cEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE-e-CC
Confidence            111110  0136789999987 5545  4699988876432111      11111  135799999999655544 4 77


Q ss_pred             eEE
Q 004885          705 YIS  707 (725)
Q Consensus       705 ~V~  707 (725)
                      .++
T Consensus       155 ~ly  157 (236)
T 1tl2_A          155 QFY  157 (236)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.96  E-value=27  Score=43.13  Aligned_cols=136  Identities=13%  Similarity=0.044  Sum_probs=85.3

Q ss_pred             CcEEEEECCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCC---
Q 004885          577 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK---  652 (725)
Q Consensus       577 g~V~IWdl~~~~~i~~l~~H-~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g---  652 (725)
                      ..|++.+......+..+... ...|...+..  +..++.++ ++.+.++.++.+......-..-...|.|+++.|..   
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence            35777777655556566532 3456666654  34666665 67888888876431111112234679999998643   


Q ss_pred             --CeEEEEEeC-CCcEEEEECCCCeeEEEEec--CCCeEEEEEec--CCCEEEEEEcCCeEEEEEC--CCCe
Q 004885          653 --EDLLCSCDN-NSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDV--ETQV  715 (725)
Q Consensus       653 --~~llaSgs~-Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fsp--dg~~Lla~s~Dg~V~IwDl--~tg~  715 (725)
                        ..+++.|.. |++|+|+++.+.+.+.....  ...+.++++..  ...+|+++-.||.+..+.+  .+|.
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~  640 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL  640 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCC
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCc
Confidence              247777775 99999999998776655543  23455665542  2246788888998755544  4553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.83  E-value=1.1  Score=50.74  Aligned_cols=142  Identities=6%  Similarity=-0.009  Sum_probs=89.7

Q ss_pred             cEEEEECCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC-----------CeeeEEEecCCC
Q 004885          578 KAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP-----------DYSLRTFTGHST  641 (725)
Q Consensus       578 ~V~IWdl~~----~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~-----------~~~l~~~~~h~~  641 (725)
                      .|.|.|.+.    +..+..+-.-......|.++|||+++++++. +.+|.|+|++.-           ..++..-..-.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            467777765    2222222222445568899999999887765 889999998741           112222222334


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCCC----------eeEEEEecCCCeEEEEE------ecCCCEEEEEEc---
Q 004885          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SCAGVFKCQSGATQMRF------QPRLGRILAAAI---  702 (725)
Q Consensus       642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~----------~~v~~~~~~~~V~sv~f------spdg~~Lla~s~---  702 (725)
                      .....+|+++| +.+.+.--|..|..|++...          ..+..+..+..+-.+.-      .++|++|++...   
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~sk  457 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSK  457 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCT
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccccc
Confidence            56788999998 57777778999999999742          34555554544545544      578888888754   


Q ss_pred             CCe----------EEEEECCCC--eEEEEE
Q 004885          703 ENY----------ISILDVETQ--VCRLKL  720 (725)
Q Consensus       703 Dg~----------V~IwDl~tg--~~v~~l  720 (725)
                      |..          -.++|+...  ++++..
T Consensus       458 drfl~vGpl~pen~QlidIsGdkM~lv~D~  487 (638)
T 3sbq_A          458 DRFLPVGPLHPENDQLIDISGDEMKLVHDG  487 (638)
T ss_dssp             TSSCCCSSSCCEEEEEEECSSSSCEEEEEE
T ss_pred             ccCcCCCCCCCCcceeEecCCCceEEEecC
Confidence            443          367777543  444443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.55  E-value=27  Score=40.41  Aligned_cols=149  Identities=9%  Similarity=0.005  Sum_probs=89.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~----~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      .|.++... ++. |..++.+ -|..+|..+.+......    .....|.++....++.+.+ ++.+ -|..+|..+..  
T Consensus       104 ~i~~i~~~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~--  176 (758)
T 3ott_A          104 DVRTMALQ-GDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGK--  176 (758)
T ss_dssp             CEEEEEEE-TTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTE--
T ss_pred             eEEEEEec-CCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCc--
Confidence            47777553 554 5555555 68889987655432211    1135688888888777655 4444 47788887654  


Q ss_pred             eEEEecC------CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCe
Q 004885          633 LRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       633 l~~~~~h------~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      ...+...      ...|.++..+.++..+.+ +.. +.|..+|..+++...... ....|.++....+|... +|+ ++-
T Consensus       177 ~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT-~~G  252 (758)
T 3ott_A          177 FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGT-DNG  252 (758)
T ss_dssp             EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEE-TTE
T ss_pred             eEEecCCCccccccceeEEEEEECCCCEEEE-EEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEe-CCc
Confidence            2222111      124888888877664443 332 458889988765432211 13458888888775544 455 456


Q ss_pred             EEEEECCCCeE
Q 004885          706 ISILDVETQVC  716 (725)
Q Consensus       706 V~IwDl~tg~~  716 (725)
                      |.++|..+++.
T Consensus       253 l~~~~~~~~~~  263 (758)
T 3ott_A          253 LYVYHNDTTPL  263 (758)
T ss_dssp             EEEECCTTSCC
T ss_pred             eeEEecCCCcE
Confidence            88888876543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.44  E-value=0.61  Score=49.60  Aligned_cols=111  Identities=6%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeEEEecC-CCCeEEEEE--ccCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCe
Q 004885          610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA  685 (725)
Q Consensus       610 ~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h-~~~V~sl~f--sP~g~~llaSg-s~Dg~I~IwDl~t~~~v~~~~~~~~V  685 (725)
                      .+++.++.||.|.-+|..+++ .+-.+... ..++....-  .+.+..+++.. ..||.|..+|..+|.....+....-+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~-~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGH-IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTE-EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCc-EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            468889999999999998887 34444332 122222110  01122344443 57999999999988666555431111


Q ss_pred             --EEEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          686 --TQMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       686 --~sv~fs-----------pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                        .-+...           ..++.+++++.++.+...|+++|+.+.++.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence              112211           145788899999999999999999998886

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.27  E-value=3.6  Score=51.47  Aligned_cols=158  Identities=10%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC--CCC-EEEEEeC---CCeE
Q 004885          555 TSKVESCHFSPDGKLLATGG-------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLS-RLATSSA---DRTV  621 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs-------~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP--d~~-~Lasgs~---DgtI  621 (725)
                      ...|..-+.+++.++++..|       -.|.+-+|.++.. .-..++||......+...-  ... .++.+..   .+.+
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL  228 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence            34577778888888776443       3477888887643 3345677776665555432  222 3332222   3688


Q ss_pred             EEEECCCC-----Ce---eeEEEecC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEE
Q 004885          622 RVWDTENP-----DY---SLRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  689 (725)
Q Consensus       622 rvWDl~~~-----~~---~l~~~~~h---~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~  689 (725)
                      +|-++...     ..   .+..+...   .....++..++... ++..-+.-|.|++||+.++.++..-+. ...|...+
T Consensus       229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~  307 (1630)
T 1xi4_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA  307 (1630)
T ss_pred             EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence            88888654     10   11111111   22344566677655 555666789999999999999866554 34444444


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCC
Q 004885          690 FQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      -....+-+++....|.|.-..+...
T Consensus       308 ~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          308 PHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             cCCCCCceEEEcCCceEEEEEEccc
Confidence            4433333444455565555444433

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.30  E-value=46  Score=40.05  Aligned_cols=38  Identities=16%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             CeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       684 ~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+.+++..++..++++.+.|+++|||++.+++|+.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            36777788888899999999999999999999998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.85  E-value=6.4  Score=45.75  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=79.9

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCeEEEEe-c-------cCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 004885          565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL-E-------EHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT  626 (725)
Q Consensus       565 pdg~~LaSgs~D----g~V~IWdl~~~~~i~~l-~-------~H~~~V~~IafsPd~~~Lasgs~D------gtIrvWDl  626 (725)
                      .++.+++.|+.+    ..+.+||..+.+-...- .       ........+.+..++..++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            367777777754    46888888765432221 1       111122233332266677777643      25778888


Q ss_pred             CCCCeeeEEEec--CCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEe-----c-CCCeEEEEEecC-CC
Q 004885          627 ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-----C-QSGATQMRFQPR-LG  695 (725)
Q Consensus       627 ~~~~~~l~~~~~--h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~-----~-~~~V~sv~fspd-g~  695 (725)
                      .+..  ...+..  ....-.+++...++. +++.|+.++  .+.+||+.+......-.     . ......+.+..+ +.
T Consensus       476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTRE--WSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTE--EEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             CCCc--EEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            8754  121111  111112233323444 777776544  69999999876554332     1 122333555655 44


Q ss_pred             EEEEEEc--C-----CeEEEEECCCCe
Q 004885          696 RILAAAI--E-----NYISILDVETQV  715 (725)
Q Consensus       696 ~Lla~s~--D-----g~V~IwDl~tg~  715 (725)
                      .++.|+.  +     +.|.+||+.+.+
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            5666655  2     468999998776

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=86.59  E-value=0.29  Score=41.26  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             CCCcchHHHHHHHHHHHHHhhCChHHHHHHHHhcCCCCCC
Q 004885            2 SQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (725)
Q Consensus         2 ~~~~~~~~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~   41 (725)
                      ..+.+.++ -||.-|++||..+++.+++.+|.+|.+++.+
T Consensus         4 iLt~rQ~e-EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A            4 VLSQRQRD-ELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             CCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             CCCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            33444433 5799999999999999999999999887754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=85.20  E-value=18  Score=36.85  Aligned_cols=141  Identities=15%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|..|+...+ ..++. . ||.|+.|-......+..-..-...|..|+.-.+.  .+.-. |+.|..|-...... +-..
T Consensus        64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gq-lg~~  136 (282)
T 3qhy_B           64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQ-TTVP  136 (282)
T ss_dssp             CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTST-TSCC
T ss_pred             CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCc-CCCC
Confidence            4666666432 23333 4 8999999765422111111113467777765443  33334 89999997665331 1111


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ......|..|+.-...  .+ .-. ||.|+.|-......+. .......|..|+...+  +.++. .||.|+.|=.
T Consensus       137 ~~~~~~i~~i~~G~~~--~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~  205 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYT--AL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGD  205 (282)
T ss_dssp             GGGGSSEEEEEECSSE--EE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEEC
T ss_pred             ccCCCCeEEEEcccCE--EE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEEC
Confidence            1122456666654332  22 223 6888888765321111 1111345666655433  33333 5777777754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.11  E-value=17  Score=44.65  Aligned_cols=37  Identities=16%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       685 V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.+++..++..++++.+.|+++||||+.+++|+.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            4556677787899999999999999999999998864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.02  E-value=14  Score=40.83  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC--eeeEEEe---------cCCCCeEEEEEccC---CCeEEEEEeC-
Q 004885          598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN-  661 (725)
Q Consensus       598 ~~V~~IafsPd~~-~Lasgs~DgtIrvWDl~~~~--~~l~~~~---------~h~~~V~sl~fsP~---g~~llaSgs~-  661 (725)
                      ...+.|+|.|++. +|+++...|.|++++.....  ..+..+.         ........|+|+|+   ..+++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999986 56666778999999754321  1222221         11356889999996   3345555432 


Q ss_pred             -C----------CcEEEEECCC----------CeeEEEEec---CCCeEEEEEecCCCEEEEEEc
Q 004885          662 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       662 -D----------g~I~IwDl~t----------~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~  702 (725)
                       +          ..|.-|.+..          .+.+..+..   ......|+|.|||..+++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1344455532          223333331   345789999999876666554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.20  E-value=27  Score=36.75  Aligned_cols=147  Identities=7%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCC----cEEEEECCCCeEEEEec------c--------CCCCeEEEEEcC-C-CCEEE
Q 004885          556 SKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLE------E--------HTQWITDVRFSP-S-LSRLA  613 (725)
Q Consensus       556 ~~V~~i~fSp--dg~~LaSgs~Dg----~V~IWdl~~~~~i~~l~------~--------H~~~V~~IafsP-d-~~~La  613 (725)
                      ..|.+|++.|  .+.+++ +...+    .|...+ +.++.-..+.      .        +...|.+|++.| + ...|+
T Consensus        55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            4699999998  444444 44444    344332 2222211111      0        112577899987 2 45566


Q ss_pred             EEeCCCeEEEEECCCCCeeeEEEec-------------------CCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCCC
Q 004885          614 TSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG  673 (725)
Q Consensus       614 sgs~DgtIrvWDl~~~~~~l~~~~~-------------------h~~~V~sl~fsP~g-~~llaSgs~Dg~I~IwDl~t~  673 (725)
                      .+...+.|...+  .+......+..                   ....|.+|.++|.. ..+++... ++.|...+ +.+
T Consensus       133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG  208 (394)
T 3b7f_A          133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DAG  208 (394)
T ss_dssp             EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-STT
T ss_pred             EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCC
Confidence            665555544332  22212222211                   12357899999843 33554433 34444332 222


Q ss_pred             eeEEEEec--------------CCCeEEEEEecCC-CEEEEEEcCCeEEEE
Q 004885          674 SCAGVFKC--------------QSGATQMRFQPRL-GRILAAAIENYISIL  709 (725)
Q Consensus       674 ~~v~~~~~--------------~~~V~sv~fspdg-~~Lla~s~Dg~V~Iw  709 (725)
                      +.-..+..              ...+.+|.++|.. ..|+++...+ |...
T Consensus       209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s  258 (394)
T 3b7f_A          209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM  258 (394)
T ss_dssp             SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred             CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence            22111111              1247889998863 5666655433 4443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.09  E-value=45  Score=36.61  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEec---------cCCCCeEEEEEcCC---CCEEEEE-eC--
Q 004885          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS---LSRLATS-SA--  617 (725)
Q Consensus       557 ~V~~i~fSpdg~-~LaSgs~Dg~V~IWdl~~~---~~i~~l~---------~H~~~V~~IafsPd---~~~Lasg-s~--  617 (725)
                      .-..|+|.||+. .|+++...|.|++++.+..   ..+..+.         .....+..|+|+|+   ..+|++. +.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            367899999996 5566678899999975432   1222221         11356789999996   3334332 21  


Q ss_pred             C----------CeEEEEECCCC---------CeeeEEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004885          618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       618 D----------gtIrvWDl~~~---------~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      +          ..|.-|.+...         ...+..+.  ........|.|.|||. |+++.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G  157 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG  157 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence            1          13444665421         11222222  1122368899999997 555544

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=82.75  E-value=0.8  Score=38.83  Aligned_cols=43  Identities=23%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhCChHHHHHHHHhcCCCCCCCCCC-CCCCccHH
Q 004885           11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAI-DAPGGFLF   53 (725)
Q Consensus        11 ~L~~yiydyl~k~~~~~~A~~f~~e~~~~~~~~~~-~~~~~fL~   53 (725)
                      -+|--||-||..+|+..||-+|-+|+++...+... ..|.|-|-
T Consensus         7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLV   50 (90)
T 2xtc_A            7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALI   50 (90)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHH
Confidence            48989999999999999999999999886543322 23444443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.35  E-value=42  Score=35.97  Aligned_cols=135  Identities=7%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             cEEEEECCCC--eEEEEecc------CCCCeEEEEEc---CC----CCEEEEEe-CCCeEEEEECCCCCeeeEEEe----
Q 004885          578 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT----  637 (725)
Q Consensus       578 ~V~IWdl~~~--~~i~~l~~------H~~~V~~Iafs---Pd----~~~Lasgs-~DgtIrvWDl~~~~~~l~~~~----  637 (725)
                      +|.+||+.+.  +.++.+.-      ....+.+|++.   |+    +.+++... .+.-|.|+|+.++. ..+...    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~-swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD-SWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE-EEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc-EEEEccCCCc
Confidence            6889999998  88877642      13467888887   22    34555554 46789999998876 223221    


Q ss_pred             ----------cC----CCCeEEEEEccC----CCeEEEEEeCCCcEEEEE---CCCC---eeEEEEecC---CCeEEEEE
Q 004885          638 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMRF  690 (725)
Q Consensus       638 ----------~h----~~~V~sl~fsP~----g~~llaSgs~Dg~I~IwD---l~t~---~~v~~~~~~---~~V~sv~f  690 (725)
                                +.    ...|..|+++|+    ++.+++.......++-..   +++.   ..+..+...   .....+++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                      11    246888999998    676766665443343332   2222   222222222   23445667


Q ss_pred             e-cCCCEEEEEEcCCeEEEEECCC
Q 004885          691 Q-PRLGRILAAAIENYISILDVET  713 (725)
Q Consensus       691 s-pdg~~Lla~s~Dg~V~IwDl~t  713 (725)
                      + .+|..+++--..+.|.+|+..+
T Consensus       283 D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTS
T ss_pred             eCCCCeEEEEeccCCeEEEEeCCC
Confidence            6 4444444445578999999876

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.47  E-value=86  Score=37.67  Aligned_cols=38  Identities=13%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004885          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (725)
Q Consensus       642 ~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~  680 (725)
                      .+.+++..++.. ++++-+.|+++|||++.++.|+.+..
T Consensus       237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence            466777777766 56678889999999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	725
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 3e-20
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 663 SEIRYW 668
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 23/188 (12%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
            +                          L + S D+T+++WD       L T  GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250

Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAI 702
             + FH      + SC ++  +R W   N  C           T + F      ++  ++
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 703 ENYISILD 710
           +  + + +
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 21/181 (11%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
               P+G  + +   DK   +W  ++     T   H +W+  VR +   + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDN 661
           VRVW     +        H   V  + + P                        L S   
Sbjct: 167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 662 NSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720
           +  I+ W ++ G C             + F      IL+ A +  + + D + + C   L
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285

Query: 721 Q 721
            
Sbjct: 286 N 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
            S + L     + +   +          +       + +   P    I++A+ +  I + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 710 DVETQVCRLKLQ 721
           +V+T  C     
Sbjct: 129 EVQTGYCVKTFT 140

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 44/176 (25%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV----------- 603
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+           
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 604 -------------------------------RFSPSLSRLATSSADRTVRVWDTENPDYS 632
                                             P+   + ++S D+T+++W+ +     
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 688
           ++TFTGH   V  +  +     L+ SC N+  +R W +    C    +      + 
Sbjct: 136 VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 662 NSEIRYWS 669
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.6 bits (197), Expect = 6e-17
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 3/155 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 677 GVFKCQSGA-TQMRFQPRLGRILAAAIENYISILD 710
           GV        + +        +   + ++++ I +
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 4/170 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 615 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              D    +++ +  + +    R   GH+  +    F    + +  S D  +   +    
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD-TTCALWDIET 173

Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
                           +   P     ++ A +    + DV   +CR    
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
              + TL  H   I  + +      L ++S D  + +WD+   +  +      S+ VM+ 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103

Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691
            + PS   + C   +N    Y          V +  +G T     
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC 148

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           I D R + + + L+  + +               RT  GH   + ++ +      LL S 
Sbjct: 18  IRDARKACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTD-SRLLVSA 73

Query: 660 DNNSEIRYWSINNGSCAGVFKCQS 683
             + ++  W     +       +S
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRS 97

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.1 bits (198), Expect = 6e-17
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 2/127 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 676 AGVFKCQ 682
             V K  
Sbjct: 130 WWVCKHI 136

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 6e-13
 Identities = 9/81 (11%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 655 LLCSCDNNSEIRYWSINNGSC 675
            + +C  +     W++   + 
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 4/152 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
            + +   +     +V    ++PD   + T G D+ A +W  +  T K    +    +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691
             + + R +S                ++M F 
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 7e-14
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 614 TSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           + S DR+V++W+ +N +               T+ GH   V+S+    + ++ + S   +
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKD 329

Query: 663 SEIRYWSINNGSCAGVFKCQSGA-------TQMRFQPRLGRILAAAIENYISILDVE 712
             + +W   +G+   + +    +             P        + +    I   +
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 9e-14
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 609 LSRLATSSADRTVRVWDTE 627
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  V FSP    LAT + DR +R+WD EN               +    +    D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 715
            S   +  +R W +  G C+     + G T +   P  G+ +AA  ++  + + D ET  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 716 CRLKLQVSH 724
              +L   +
Sbjct: 239 LVERLDSEN 247

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 46/231 (19%), Positives = 75/231 (32%), Gaps = 62/231 (26%)

Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF------ 605
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + +      
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 606 ------------------------------------SPSLSRLATSSADRTVRVWDTENP 629
                                                     +A  S DR VRVWD+E  
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 630 ------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---- 679
                 D    + TGH  +V S+ F       + S   +  ++ W++ N +         
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 680 ---------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
                      +     +        IL+ + +  +   D ++    L LQ
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 24/169 (14%)

Query: 570 LATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
                 +   +L+           +  +L+ HT  +  V+FS     LAT   ++T +V+
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 625 DTENP-----------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
              +                  + +  +       + S+ F P  + L    ++     +
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
              N      +   +     + + P   ++++ + +  + I D+ T  C
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 687
            + F    E L   C+     + + +++GS        S A +
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANK 107

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 3e-14
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 675 CAGVFKCQSGATQMRFQP 692
                  +     +   P
Sbjct: 130 SVPDHGEEHDYPLVFHTP 147

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 617 ADRTVRVWD 625
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 4e-14
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  F+  GK   + G D     W T         +  +  +     S     + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328

Query: 620 TVRVWD 625
              V++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           FQ    S     S H + DG++       D              +TL  H + +  V  S
Sbjct: 3   FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
                + T      V+VWD  +P      S          + S    P    L+   + +
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S++ S  + P G+ LA G       +              H   +  ++F+       ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
             D  +  W T  P  +    +  S++V+S D     +  + +   + +   + +
Sbjct: 284 GKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 6/133 (4%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
              V +   S   + + TGG      +W       KS + +        +I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L       T+ +WD   P   ++     S              +  SC ++  I  W 
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 670 INNGSCAGVFKCQ 682
           ++N +    F+  
Sbjct: 170 LHNQTLVRQFQGH 182

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +S V SC  S D K + TG  DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 9e-14
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFH 649
             +    +I+D++  PS S L  +S D ++ V+    +  +  L     +   ++  +F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
            + +  +       EI    +     
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 14/147 (9%), Positives = 34/147 (23%), Gaps = 3/147 (2%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQ 691
           I      N     +      +   + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVK 150

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 7e-09
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  FSP  K L T G D     W  ++        +     + V+ + S + L  +++D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           T +     +     +T   +++++  + 
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SP    L T+ +D  +  W+ +     ++ F   +     +    S +++LC   ++   
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACS-DNILCLATSDDTF 316

Query: 666 RYWSINNGSCAG 677
           +  +  + +   
Sbjct: 317 KTNAAIDQTIEL 328

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 20/159 (12%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS 616
                +   L  G ++ +   +        +   E +    Q              A SS
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213

Query: 617 ADRTVRVWDTEN--------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
            D  V V   ++                      T  +  V S++F P +   L +  ++
Sbjct: 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSD 272

Query: 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701
             I  W++        F   +  + ++       IL  A
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACS-DNILCLA 310

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           ++      H + IT +  S     L ++ A+  +  WD      +      H+T +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681
                +  L +   +  ++               
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAV 94

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 1e-08
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 2/122 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           T S D  ++V               +  +   L    S +  +        I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 674 SC 675
           + 
Sbjct: 131 TE 132

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 4e-07
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 619 RTVRVWD 625
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHS 640
                    ++   HT  +  V +SP   RLAT S D +V VW+   P D+ +     H+
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            + ++     + E  + S   +S I++W++
Sbjct: 269 MSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W          L+ H   +         +R+ + S D T++VW        LRT  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            V S     +      +          
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAE 85

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG  + +G  D    +W  E+     TL  H    + +    ++  L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           V++WD +     L+T  G +    ++      ++ + +  ++  ++ W +  G       
Sbjct: 239 VKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 681 C------QSGATQMRFQPRLGRILAAA-----IENYISILD 710
                       ++R       + A        E  + +LD
Sbjct: 298 TLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 7e-12
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +     V   +T    ++L   T     +   +          S   ++ +R W I  G 
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128

Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           C  V      A +        R+++ A +  + + D ET+ C   LQ
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQ 174

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 681 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS 725
             +         Q     ++ ++ +  + + D++T      L    S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 669 SIN 671
             +
Sbjct: 337 DFD 339

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQP 692
            +  + +   +                
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDF 154

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 5e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 620 TVRVWDTE 627
            +   + E
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 9e-08
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640
                         H+  +  + +SP  +++A++SAD+T+++W+        +T    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                L    +K   L S   N  I + 
Sbjct: 282 IEDQQLGIIWTK-QALVSISANGFINFV 308

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.3 bits (149), Expect = 4e-11
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           +E    S D+  ++   + +    
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGS 81

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 6e-10
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              + +   +P    L +G +D + + W     +  S  ++H+  I  +  S +      
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA------ 57

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
                   +   +    +  T     +       +      + + D++  I      +  
Sbjct: 58  ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 675 CAGVFKCQSGATQM 688
            +        A  +
Sbjct: 115 KSVRLNSPGSAVSL 128

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           L+T +GH+  + +L  +P     L S   +  I  WS ++    
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.6 bits (150), Expect = 5e-11
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 8/133 (6%)

Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            + ++D          F  +   V ++    + +  + + D    +              
Sbjct: 67  FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 680 KCQSGATQMRFQP 692
             ++  T      
Sbjct: 125 SREAMITDFTISD 137

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                  +L+ +G  D    LW  E                         R+ + + D  
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 621 VRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           ++VWD               LRT   HS  V  L F       + S  ++  I  W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 45/203 (22%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--- 610
            TSK   C    D + + +G  D    +W   +   K  L  HT  +  +++   +    
Sbjct: 13  ETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 611 -----------------------------------RLATSSADRTVRVWDTEN--PDYSL 633
                                               + T S DR++ VWD  +       
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693
           R   GH   V  +DF       + S   +  I+ W+ +                   Q R
Sbjct: 132 RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYR 187

Query: 694 LGRILAAAIENYISILDVETQVC 716
              +++ + +N I + D+E   C
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGAC 210

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 612 LATSSADRTVRVWD 625
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                D K + +   D+   +W T +     TL  H + I  +++   L  + + S+D T
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNT 199

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------- 673
           +R+WD E                  +         + S   + +I+ W +          
Sbjct: 200 IRLWDIECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 674 --SCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILD 710
              C       SG   +++F     +I++++ ++ I I D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685
           +   +  S  V  L +       + S   ++ I+ W  N   C  +    +G+
Sbjct: 8   IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684
             H   + +++    +  L+ +   + ++ ++ I           +  
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 110

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 16/142 (11%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
            + + S           +   D    +W  +    ++  ++      H   +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
           + R       +AT+S    +  +     D   +        ++  D        L    +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 662 NSEIRYWSINNGSCAGVFKCQS 683
           N  +    +      G      
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWK 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 17/141 (12%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWC----------------TESFTVKSTLEEHTQW 599
           + + S  FSP G LLA                            T S         H+ W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           +  + F+ S   L ++  D  +R WD +  +  + T   H   +   +   + ++   S 
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 660 DNNSEIRYWSINNGSCAGVFK 680
                     +  G  +G+  
Sbjct: 351 AEPGVFDVKFLKKGWRSGMGA 371

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 23/167 (13%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL------WCTESFTVKSTL 593
                    +     +    S   S  G L+ATG ++    +          +F  + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------SLRTFTG 638
             ++  I  V+FSP  S LA +    +         ++               +      
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685
           HS+ VMSL F+ S E L  +  +   +R+W +               
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDD 333

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 5e-10
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 15/169 (8%)

Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705
                ++   + S ++G+  G     S         +   + +  + + 
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 9e-08
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
            + AT  AD T+RVWD       ++ +T     +    +    +    + S   +  + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 668 WSI 670
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
                D +  AT G D    +W   +           Q + + +     +   R+ + S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 618 DRTVRVWD 625
           D T+  ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 25/172 (14%), Positives = 45/172 (26%), Gaps = 12/172 (6%)

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
           +    R  + G        Q     +S V +  FSP    + L +G    K ++W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSLRTFT 637
                    VKS  +     I+D+ +     RL       D        ++ +       
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR 689
                             +   D+ S + Y        A         + +R
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 10/136 (7%), Positives = 31/136 (22%), Gaps = 7/136 (5%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +   D +    +              ++ S    P  +++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 676 AGVFKCQSGATQMRFQ 691
             VF    G      +
Sbjct: 124 LEVFSTADGLEAKPVR 139

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 615 SSADRTVRVWDTE 627
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 5/125 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 680 KCQSG 684
           K   G
Sbjct: 330 KLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
                F   G  L  GG      ++  ++      ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.3 bits (134), Expect = 6e-09
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 14/187 (7%), Positives = 44/187 (23%), Gaps = 24/187 (12%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 596
           +    ++ DG  L   G D   +     +      ++                       
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
                       +     ++    +   D E  + ++R          S   +P+K    
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
            + +    +  + +   +             +        +        ++  D ET   
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 717 RLKLQVS 723
           + ++ + 
Sbjct: 314 KGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 14/150 (9%), Positives = 37/150 (24%), Gaps = 16/150 (10%)

Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
           I  +         +P G+   AT    +  V     +      ++  T       +    
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----------VMSLDFHPSKED 654
            SP    LA   +   + +   E     +  +   + +          +  L +      
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684
           L     +   +   +        +   ++ 
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 604 RFSPSLSR 611
                 +R
Sbjct: 328 ASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           +   +    + V DTE      +  T      T M     P       + + +  +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 670 INNGSCAGVFKCQSGATQMRFQ 691
           +  G   G     +   +++  
Sbjct: 63  LVTGETLGRIDLSTPEERVKSL 84

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 13/127 (10%), Positives = 32/127 (25%), Gaps = 7/127 (5%)

Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 677 GVFKCQS 683
            +   + 
Sbjct: 145 KIQSTRG 151

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 7/100 (7%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
            A +       + D E  +   +  +    T    ++HP 
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 5/99 (5%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              +                 +  +    TV +  +HP 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 660 -DNNSEIRYW 668
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 673 GSCAGVF 679
              A  F
Sbjct: 69  DDGALTF 75

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 630
                    +    S  V +T+   +        SP  +++   ++    V + DT   +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690
                  G S   +++     +     +   +S +      + + AG  K       +  
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 691 QP 692
            P
Sbjct: 124 SP 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	725
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.78
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.72
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.63
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.52
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.52
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.42
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.4
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.27
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.27
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.01
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.91
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.81
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.58
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.55
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.3
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.02
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.17
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.81
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.82
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.67
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.54
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.5
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.17
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.07
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.04
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.53
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	92.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.22
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.74
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.65
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.08

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.2e-28  Score=256.02  Aligned_cols=215  Identities=19%  Similarity=0.304  Sum_probs=188.4

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...++++.|+|++.               ++++|+.|++|++|......                 ......+..|.
T Consensus        55 ~~H~~~v~~~~~sp~g~---------------~latg~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~  102 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGY---------------YCASGDVHGNVRIWDTTQTT-----------------HILKTTIPVFS  102 (311)
T ss_dssp             CCCSSCEEEEEECTTSS---------------EEEEEETTSEEEEEESSSTT-----------------CCEEEEEECSS
T ss_pred             cCCCCCEEEEEEeCCCC---------------eEeccccCceEeeeeeeccc-----------------ccccccccccc
Confidence            34567888999998876               99999999999999554331                 12234567899


Q ss_pred             CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCee
Q 004885          556 SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      +.|.+++|+|++++|++++.  +..++||++++++.+..+.+|...|++++|+|++.+ |++|+.|++|++||+++.. +
T Consensus       103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~  181 (311)
T d1nr0a1         103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-F  181 (311)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-E
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccc-c
Confidence            99999999999999999986  456999999999999999999999999999998875 7889999999999999877 7


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCCEEEEEEcCC
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIEN  704 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~~Lla~s~Dg  704 (725)
                      ...+.+|...|+++.|+|++. ++++++.|+.|++||++++..+..+..        ...|++++|+|++.+|++++.|+
T Consensus       182 ~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         182 KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccCcccc-ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence            888899999999999999988 677899999999999999988887753        45799999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEeCCC
Q 004885          705 YISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       705 ~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .|+|||+++++++++|..|.
T Consensus       261 ~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         261 TIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             EEEEEETTTTEEEEEEECCS
T ss_pred             eEEEEECCCCcEEEEEECCC
Confidence            99999999999999998875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1e-26  Score=249.18  Aligned_cols=212  Identities=17%  Similarity=0.216  Sum_probs=180.1

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      .++++++|+|++.               ++++|+.|+.|++|..                 .+..+..+..+++|.+.|+
T Consensus         8 ~pIt~~~~s~dg~---------------~la~~~~~~~i~iw~~-----------------~~~~~~~~~~l~gH~~~V~   55 (371)
T d1k8kc_           8 EPISCHAWNKDRT---------------QIAICPNNHEVHIYEK-----------------SGNKWVQVHELKEHNGQVT   55 (371)
T ss_dssp             SCCCEEEECTTSS---------------EEEEECSSSEEEEEEE-----------------ETTEEEEEEEEECCSSCEE
T ss_pred             CCeEEEEECCCCC---------------EEEEEeCCCEEEEEEC-----------------CCCCEEEEEEecCCCCCEE
Confidence            4588999999887               8999999999999943                 2234556788899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eeE
Q 004885          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR  634 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~---~l~  634 (725)
                      +|+|+|++++|++|+.|++|+|||+.+...  ...+.+|...|++++|+|++++|++++.|++|++|+++....   ...
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc
Confidence            999999999999999999999999987654  445678899999999999999999999999999999877652   233


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCe------------------eEEEEe-cCCCeEEEEEecCCC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------CAGVFK-CQSGATQMRFQPRLG  695 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~------------------~v~~~~-~~~~V~sv~fspdg~  695 (725)
                      ....|...|.+++|+|++. +|++|+.|+.|++||+....                  .+.... +...|.+++|+|++.
T Consensus       136 ~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  214 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             ccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc
Confidence            4457889999999999988 67899999999999986432                  233333 256799999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          696 RILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       696 ~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|++++.|+.|++||+.+++++..+.+|.
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             cccccccCCcceEEeeecccceeeeeccc
Confidence            99999999999999999999999999886

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1e-25  Score=228.46  Aligned_cols=234  Identities=18%  Similarity=0.291  Sum_probs=198.5

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccc-------cc----------
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS-------AE----------  538 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~-------~~----------  538 (725)
                      ..+...++++.|+|++.               +|++|+.|++|++|+............+.       +.          
T Consensus        14 ~GH~~~I~~l~~sp~~~---------------~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFS---------------VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             ECCSSCEEEEEECSSSS---------------EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCeEEEEEcCCCC---------------EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            34667899999999876               99999999999999776543211110000       00          


Q ss_pred             ------cCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEE
Q 004885          539 ------VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL  612 (725)
Q Consensus       539 ------~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~L  612 (725)
                            ............+.+|...+.++.|+++++.+++++.|+.+++||+++++.+..+.+|...+.+++|+|++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence                  00112233455667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC-------------------eEEEEEeCCCcEEEEECCCC
Q 004885          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDNNSEIRYWSINNG  673 (725)
Q Consensus       613 asgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~-------------------~llaSgs~Dg~I~IwDl~t~  673 (725)
                      ++++.|+.|++|++.+.. .+..+.+|...+.++.|+|++.                   .++++++.|+.|++||++++
T Consensus       159 ~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEeCCCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            999999999999999988 7888999999999999988542                   36778999999999999999


Q ss_pred             eeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          674 SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       674 ~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      +++..+.. ...|.+++|+|++.+|++++.||.|+|||+++++++.+|.+|.+
T Consensus       238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  290 (317)
T d1vyhc1         238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH  290 (317)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC
Confidence            99999886 67899999999999999999999999999999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.2e-25  Score=232.19  Aligned_cols=215  Identities=18%  Similarity=0.298  Sum_probs=185.4

Q ss_pred             ccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       475 ~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      ...|...+.++.|+|++.               +|++|+.|++|++|+..                   +.+.+..+..|
T Consensus        51 L~GH~~~I~~l~~s~~~~---------------~l~sgs~Dg~v~iWd~~-------------------~~~~~~~~~~~   96 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSR---------------LLVSASQDGKLIIWDSY-------------------TTNKVHAIPLR   96 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS---------------EEEEEETTTEEEEEETT-------------------TTEEEEEEECS
T ss_pred             ECCCCCCEEEEEECCCCC---------------EEEEEECCCceeeeecc-------------------cceeEEEEecc
Confidence            345777899999999887               99999999999999442                   23566778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEE--------------------------------------
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKST--------------------------------------  592 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~----~~i~~--------------------------------------  592 (725)
                      ...|.+++|+|++++|++|+.|+.|++|+....    .....                                      
T Consensus        97 ~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (340)
T d1tbga_          97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEE
T ss_pred             cccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999986432    11111                                      


Q ss_pred             ---eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885          593 ---LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       593 ---l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD  669 (725)
                         ...+...+..+.+.+...++++++.|+.|++||++++. ++..+.+|...|++|+|+|++. +|++++.|+.|++||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~  254 (340)
T d1tbga_         177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFD  254 (340)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             cccccccceeEeeeccccccceeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence               12345667888888899999999999999999999887 7889999999999999999987 677899999999999


Q ss_pred             CCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          670 INNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       670 l~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      ++....+..+..   ...|++++|+|++.+|++++.||.|+|||+.+++++.++.+|.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~  313 (340)
T d1tbga_         255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN  313 (340)
T ss_dssp             TTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             ecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC
Confidence            999988887754   56699999999999999999999999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-25  Score=235.72  Aligned_cols=215  Identities=17%  Similarity=0.256  Sum_probs=185.4

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|++++.               +|++|+ |+.|++|+.......              .........+|.+
T Consensus        49 ~H~~~V~~v~fs~~g~---------------~latg~-dg~V~iWd~~~~~~~--------------~~~~~~~~~~h~~   98 (337)
T d1gxra_          49 NHGEVVCAVTISNPTR---------------HVYTGG-KGCVKVWDISHPGNK--------------SPVSQLDCLNRDN   98 (337)
T ss_dssp             CCSSCCCEEEECSSSS---------------EEEEEC-BSEEEEEETTSTTCC--------------SCSEEEECSCTTS
T ss_pred             CCCCcEEEEEECCCCC---------------EEEEEE-CCEEEEEEccCCccc--------------ceeEEeeecCCCC
Confidence            4667789999999887               999998 899999966544211              1112334568999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~  634 (725)
                      .|.+|+|+|++++|++|+.|++|++||+..  .+....+..|...|.+++|+|++.++++++.|+.|++||+.+.. +..
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~  177 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            999999999999999999999999999875  45667788999999999999999999999999999999999887 678


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       635 ~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      ...+|...|.+++|++++. .+++++.|+.|++||+++++.+..+.+...|.+++|+|++.+|++++.|+.|++||++++
T Consensus       178 ~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccc
Confidence            8889999999999999987 666888899999999999999999998899999999999999999999999999999998


Q ss_pred             eEEEEEeCCC
Q 004885          715 VCRLKLQVSH  724 (725)
Q Consensus       715 ~~v~~l~GH~  724 (725)
                      +.+. ..+|.
T Consensus       257 ~~~~-~~~~~  265 (337)
T d1gxra_         257 DKYQ-LHLHE  265 (337)
T ss_dssp             CEEE-ECCCS
T ss_pred             cccc-ccccc
Confidence            7653 44553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.9e-26  Score=241.01  Aligned_cols=231  Identities=24%  Similarity=0.325  Sum_probs=169.9

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...++++.|+++|.               +|++|+ |+.|++|...++............. .............|..
T Consensus        60 ~H~~~V~~l~fs~dg~---------------~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  122 (388)
T d1erja_          60 DHTSVVCCVKFSNDGE---------------YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDL  122 (388)
T ss_dssp             ECSSCCCEEEECTTSS---------------EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCC
T ss_pred             CCCCcEEEEEECCCCC---------------EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCC
Confidence            4677889999999886               899987 8999999776553211111111000 0111122334457889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-----
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----  631 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~-----  631 (725)
                      .|++++|+|++++|++|+.||+|++||...++.+..+.+|...|.+++|++++..+++++.++.|++||+++...     
T Consensus       123 ~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccc
Confidence            999999999999999999999999999999999999999999999888888877777777777777776653210     


Q ss_pred             ------------------------------------eeEE-------EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 004885          632 ------------------------------------SLRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (725)
Q Consensus       632 ------------------------------------~l~~-------~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw  668 (725)
                                                          .+..       ..+|...|.+++|+|++. +|++++.|+.|++|
T Consensus       203 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iw  281 (388)
T d1erja_         203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLW  281 (388)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEE
Confidence                                                1111       235778899999999988 66789999999999


Q ss_pred             ECCCCeeE------------EEEe-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 004885          669 SINNGSCA------------GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSHS  725 (725)
Q Consensus       669 Dl~t~~~v------------~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~s  725 (725)
                      |++++...            .... +...|++++|+|++.+|++++.||.|+|||+++++++.+|+||.+
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99865432            2222 356799999999999999999999999999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.3e-25  Score=235.85  Aligned_cols=204  Identities=16%  Similarity=0.185  Sum_probs=175.0

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i  561 (725)
                      ..++.++|++.               .++.++ ++.|.+|....                   ......+.+|...|+|+
T Consensus        20 ~~~~a~~~~g~---------------~l~~~~-~~~v~i~~~~~-------------------~~~~~~~~~H~~~v~~~   64 (311)
T d1nr0a1          20 AVVLGNTPAGD---------------KIQYCN-GTSVYTVPVGS-------------------LTDTEIYTEHSHQTTVA   64 (311)
T ss_dssp             CCCCEECTTSS---------------EEEEEE-TTEEEEEETTC-------------------SSCCEEECCCSSCEEEE
T ss_pred             eEEEEEcCCCC---------------EEEEEe-CCEEEEEECCC-------------------CceeEEEcCCCCCEEEE
Confidence            34556677665               555553 56788994422                   23445678999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeEEEe
Q 004885          562 HFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~V~IWdl~~~~~--i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~  637 (725)
                      +|+|+|++||+|+.||+|+|||+.+...  ...+.+|...|.+++|+|++.+|++++.  +..++||+++++. .+..+.
T Consensus        65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~  143 (311)
T d1nr0a1          65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLT  143 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCC
T ss_pred             EEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccc-cccccc
Confidence            9999999999999999999999987653  3567889999999999999999999986  4569999999887 678889


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~  716 (725)
                      +|...|.+++|+|+++++|++|+.|+.|++||++++++...+.. ...|++++|+|++.+|++++.|+.|++||+++++.
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc
Confidence            99999999999999998899999999999999999999888875 67899999999999999999999999999999988


Q ss_pred             EEEEe
Q 004885          717 RLKLQ  721 (725)
Q Consensus       717 v~~l~  721 (725)
                      +..++
T Consensus       224 ~~~~~  228 (311)
T d1nr0a1         224 TGVFE  228 (311)
T ss_dssp             EEECB
T ss_pred             ccccc
Confidence            88775

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-24  Score=229.04  Aligned_cols=211  Identities=17%  Similarity=0.175  Sum_probs=184.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +...+.++.|+|++.               ++++|+.|+.|++|+....                 .......+..|...
T Consensus        96 h~~~I~~v~~s~dg~---------------~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~  143 (337)
T d1gxra_          96 RDNYIRSCKLLPDGC---------------TLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPA  143 (337)
T ss_dssp             TTSBEEEEEECTTSS---------------EEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSC
T ss_pred             CCCcEEEEEEcCCCC---------------EEEEeeccccccccccccc-----------------cccccccccccccc
Confidence            344567777777665               8999999999999954322                 22455677899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      |.+++|+|++.+|++++.|+.|++||+.+++......+|...|++++|++++.++++++.|+.|++||++++. .+..+ 
T Consensus       144 v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~-  221 (337)
T d1gxra_         144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-  221 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce-eeccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876 45554 


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v  717 (725)
                      .|...|.+++|+|++. ++++++.|+.|++||++++.......+...|++++|+|++.+|++++.|+.|+|||+.+++++
T Consensus       222 ~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         222 DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccceEEEEEccccc-ccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            5788999999999987 667889999999999999988877777889999999999999999999999999999999999


Q ss_pred             EEEeCC
Q 004885          718 LKLQVS  723 (725)
Q Consensus       718 ~~l~GH  723 (725)
                      ..+..+
T Consensus       301 ~~~~~~  306 (337)
T d1gxra_         301 FQSKES  306 (337)
T ss_dssp             EEEECS
T ss_pred             EEccCC
Confidence            887643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-24  Score=228.22  Aligned_cols=221  Identities=14%  Similarity=0.163  Sum_probs=177.9

Q ss_pred             CCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       479 s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...++++.|+|+..             +.++++|+.|++|++|........           ..........+..|.+.|
T Consensus        63 ~~~v~~v~fsP~~~-------------g~~lasgs~Dg~i~iWd~~~~~~~-----------~~~~~~~~~~~~~~~~~v  118 (325)
T d1pgua1          63 SSVVTTVKFSPIKG-------------SQYLCSGDESGKVIVWGWTFDKES-----------NSVEVNVKSEFQVLAGPI  118 (325)
T ss_dssp             TSCEEEEEECSSTT-------------CCEEEEEETTSEEEEEEEEEEGGG-----------TEEEEEEEEEEECCSSCE
T ss_pred             CCCEEEEEEeeCCC-------------CCEEEEEeCCCCEEEeeecCCcce-----------eeeecccccccccccCcE
Confidence            45678888887432             248999999999999954333110           112223334567899999


Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeEE
Q 004885          559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~--Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~-Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      .+++|++++++|++++.  ++.+++|+.++++.+..+.+|...|++++|+|++.+ +++++.|+.|++||+.... ....
T Consensus       119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~  197 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSAS  197 (325)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEE
T ss_pred             EEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc-ccee
Confidence            99999999999887764  678999999999999999999999999999998764 7789999999999998765 2333


Q ss_pred             ---EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe---cCCCEEEEEEcCCeEEE
Q 004885          636 ---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ---PRLGRILAAAIENYISI  708 (725)
Q Consensus       636 ---~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs---pdg~~Lla~s~Dg~V~I  708 (725)
                         ..+|...|.+++|+|++..++++++.|+.|++||+++++++..+.. ...+..+.|+   |++.+|++++.|+.|+|
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence               3466788999999998777899999999999999999999998875 3344444443   67899999999999999


Q ss_pred             EECCCCeEEEEEeCCC
Q 004885          709 LDVETQVCRLKLQVSH  724 (725)
Q Consensus       709 wDl~tg~~v~~l~GH~  724 (725)
                      ||+++++++..+..|.
T Consensus       278 wd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EETTTTEEEEEEECCT
T ss_pred             EECCCCCEEEEEEecC
Confidence            9999999999988764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.9e-24  Score=217.58  Aligned_cols=197  Identities=19%  Similarity=0.369  Sum_probs=174.4

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (725)
                      +......+.|++++.               ++++++.|+.+++|....                   ...+..+.+|...
T Consensus       100 ~~~~~~~~~~~~~~~---------------~~~~~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~  145 (317)
T d1vyhc1         100 HDHNVSSVSIMPNGD---------------HIVSASRDKTIKMWEVQT-------------------GYCVKTFTGHREW  145 (317)
T ss_dssp             CSSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSC
T ss_pred             ccccceeeeccCCCc---------------eEEeeccCcceeEeeccc-------------------ceeeeEEccCCCc
Confidence            344456666666554               889999999999994432                   2456677899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC--------------------CEEEEEeC
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--------------------SRLATSSA  617 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~--------------------~~Lasgs~  617 (725)
                      +.+++|++++++|++++.|+.|++|++.+.+.+..+.+|...|.++.|+|+.                    .++++++.
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            9999999999999999999999999999999999999999999999998754                    46899999


Q ss_pred             CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCE
Q 004885          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR  696 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~  696 (725)
                      |+.|++||++++. ++..+.+|...|.+++|+|++. +|++++.||.|+|||+++++++..+.. ...|++++|+|++.+
T Consensus       226 d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         226 DKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             TSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CCEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            9999999999887 7899999999999999999988 667889999999999999999999986 678999999999999


Q ss_pred             EEEEEcCCeEEEEE
Q 004885          697 ILAAAIENYISILD  710 (725)
Q Consensus       697 Lla~s~Dg~V~IwD  710 (725)
                      |++++.|++|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.5e-23  Score=216.24  Aligned_cols=204  Identities=20%  Similarity=0.255  Sum_probs=166.7

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccc--------------------------cCCCceeeeEEEecCCCCCe
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE--------------------------VGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ...++++|+.|+.|++|.................                          ...............+...|
T Consensus       108 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred             cceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeE
Confidence            3459999999999999965544321111000000                          00011122344555678889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE--
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF--  636 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~--  636 (725)
                      .++.+.+.+.++++|+.|+.|++||+++++++.++.+|...|++++|+|++.+|++|+.|+.|++||++... .+..+  
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~~  266 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSH  266 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc-ccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999876 44444  


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004885          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (725)
Q Consensus       637 ~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwD  710 (725)
                      ..+...|.+++|+|++. +|++|+.||.|+|||+.+++++..+.. ...|++|+|+|++.+|++|+.||.|+|||
T Consensus       267 ~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            35667799999999988 677899999999999999999999985 67899999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3e-23  Score=221.86  Aligned_cols=203  Identities=12%  Similarity=0.125  Sum_probs=166.4

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (725)
                      .+...+.++.|+|++.               +|++|+.|++|++|...                 ...+.....+.+|..
T Consensus        49 gH~~~V~~l~fsp~~~---------------~l~s~s~D~~i~vWd~~-----------------~~~~~~~~~~~~~~~   96 (371)
T d1k8kc_          49 EHNGQVTGVDWAPDSN---------------RIVTCGTDRNAYVWTLK-----------------GRTWKPTLVILRINR   96 (371)
T ss_dssp             CCSSCEEEEEEETTTT---------------EEEEEETTSCEEEEEEE-----------------TTEEEEEEECCCCSS
T ss_pred             CCCCCEEEEEECCCCC---------------EEEEEECCCeEEEEeec-----------------ccccccccccccccc
Confidence            3556677777887665               89999999999999432                 223455566778999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--  630 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~--  630 (725)
                      .|++++|+|++++|++|+.|++|++|+++...    .......|...|++++|+|++.+|++|+.|++|++||+....  
T Consensus        97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~  176 (371)
T d1k8kc_          97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE  176 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred             cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccc
Confidence            99999999999999999999999999986643    234456789999999999999999999999999999986432  


Q ss_pred             ---------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCC
Q 004885          631 ---------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL  694 (725)
Q Consensus       631 ---------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg  694 (725)
                                     ..+....+|...|.+++|+|++. ++++++.|+.|++||+.++.++..+.. ..+|.+++|+|++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~  255 (371)
T d1k8kc_         177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES  255 (371)
T ss_dssp             CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT
T ss_pred             cccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeecccccceeeeecCCC
Confidence                           13556678899999999999988 677899999999999999999988886 5679999999996


Q ss_pred             CEEEEEEcCCeEEEEECCC
Q 004885          695 GRILAAAIENYISILDVET  713 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~t  713 (725)
                      . +++++.|+.+++|+...
T Consensus       256 ~-~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         256 S-LVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             E-EEEEETTSSCEEEEEET
T ss_pred             C-EEEEEcCCceEEEEeeC
Confidence            4 55667788776665544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.4e-23  Score=218.57  Aligned_cols=219  Identities=18%  Similarity=0.281  Sum_probs=158.5

Q ss_pred             CCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCcccc------ccccCCCce------e
Q 004885          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGR------SAEVGKGFT------F  545 (725)
Q Consensus       478 ~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~------~~~~~~~~~------~  545 (725)
                      +...+.+++|++++.               ++++|+.|+.|++|.............+      +.....+..      .
T Consensus       120 ~~~~V~~l~~s~~~~---------------~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         120 SDLYIRSVCFSPDGK---------------FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             CCCBEEEEEECTTSS---------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECCCCC---------------cceecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445678899999876               8999999999999966544211110000      000000000      0


Q ss_pred             eeEEEec----------CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCeEEEEEcC
Q 004885          546 TEFQLIP----------ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSP  607 (725)
Q Consensus       546 ~~~~~l~----------~H~~~V~~i~fSp-dg~~LaSgs~Dg~V~IWdl~~~~~i~~l-------~~H~~~V~~IafsP  607 (725)
                      ..+....          .+...+.++.|++ ++++|++|+.|+.|++||+.++..+..+       .+|...|++++|+|
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            0111111          1223344555544 6778888888888888888777665544       36888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCC-----------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004885          608 SLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (725)
Q Consensus       608 d~~~Lasgs~DgtIrvWDl~~~~-----------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v  676 (725)
                      ++.+|++++.|+.|++||+.+..           .+......|...|.+++|+|++. +|++|+.||.|+|||+++++++
T Consensus       265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEE
Confidence            99999999999999999997643           13456677899999999999988 6779999999999999999999


Q ss_pred             EEEec-CCCeEEEEE------ecCCCEEEEEEcCCeEEEEECC
Q 004885          677 GVFKC-QSGATQMRF------QPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       677 ~~~~~-~~~V~sv~f------spdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+++. ...|+++++      +|++.+|++|+.||+|+|||++
T Consensus       344 ~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99986 677998875      5788899999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=9.3e-23  Score=209.07  Aligned_cols=206  Identities=12%  Similarity=0.130  Sum_probs=161.8

Q ss_pred             cccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEe-c
Q 004885          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P  552 (725)
Q Consensus       474 l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  552 (725)
                      ....|...+++++|+|++.               +|++|+.|+.|++|+...+                   +.+..+ .
T Consensus         7 ~~~GH~~~V~~l~~s~dg~---------------~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~   52 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGK---------------TLFSADAEGHINSWDISTG-------------------ISNRVFPD   52 (299)
T ss_dssp             EECCCSSCEEEEEECTTSS---------------EEEEEETTSCEEEEETTTC-------------------CEEECSSC
T ss_pred             EcCCCCCCcEEEEECCCCC---------------EEEEEcCCCeEEEEECCCC-------------------cEEEEEcC
Confidence            4566778899999999887               8999999999999955332                   222333 4


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------------E-------------------EEEe------
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--------------V-------------------KSTL------  593 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~--------------~-------------------i~~l------  593 (725)
                      +|...|++++|+|++++ ++++.|+.|++|+.....              .                   +..+      
T Consensus        53 ~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~  131 (299)
T d1nr0a2          53 VHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT  131 (299)
T ss_dssp             SCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred             CCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            68888999999998874 455678899999863210              0                   0000      


Q ss_pred             -ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC
Q 004885          594 -EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (725)
Q Consensus       594 -~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t  672 (725)
                       ......+.+++|+|++.+|++++.|+.|++||+++..........|...|++++|+|++. ++++++.|+.|++||+.+
T Consensus       132 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence             012345788999999999999999999999999887643345567899999999999987 667899999999999988


Q ss_pred             CeeEEEEe----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          673 GSCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       673 ~~~v~~~~----~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      +..+....    +...|++++|+|++.+|++++.|+.|+|||++++.
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            76654332    25679999999999999999999999999998864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.3e-23  Score=221.62  Aligned_cols=206  Identities=15%  Similarity=0.191  Sum_probs=156.3

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKAVL  581 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpd-----g~~LaSgs~Dg~V~I  581 (725)
                      .++++++.|+.|++|................         .......+...+..++|.++     +.++++++.|++|++
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKL---------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEE---------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeecccc---------ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence            4678999999999996544322211111100         00111234556778888765     458899999999999


Q ss_pred             EECCCCe------------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE------EEe
Q 004885          582 WCTESFT------------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR------TFT  637 (725)
Q Consensus       582 Wdl~~~~------------------~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~------~~~  637 (725)
                      |++....                  .......+...+++++|+|++ +|++|+.|++|+|||+.++. ++.      .+.
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~  228 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMI  228 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-cccccccccccc
Confidence            9974210                  111123456678999999987 89999999999999999876 443      345


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCCCeeEEEEe--------------cCCCeEEEEEecCCCEEEEE
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFK--------------CQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg---~I~IwDl~t~~~v~~~~--------------~~~~V~sv~fspdg~~Lla~  700 (725)
                      +|...|.+|+|+|++. +|++|+.|+   .|++||++++.++..+.              |...|++|+|+|++.+|+++
T Consensus       229 ~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         229 NNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             cccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            7899999999999998 677888776   49999999999888774              45679999999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEeCCC
Q 004885          701 AIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.|++|+|||+++++++.+|+||.
T Consensus       308 s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         308 GWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CCCCEEEEEECCCCCEEEEECCcC
Confidence            999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.4e-22  Score=210.04  Aligned_cols=178  Identities=16%  Similarity=0.196  Sum_probs=151.9

Q ss_pred             eeEEEecCC-CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCeEEEEEcCCCCEEEE
Q 004885          546 TEFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLAT  614 (725)
Q Consensus       546 ~~~~~l~~H-~~~V~~i~fSp--dg~~LaSgs~Dg~V~IWdl~~~~--------~i~~l~~H~~~V~~IafsPd~~~Las  614 (725)
                      ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+...+        ....+..|.++|.+++|++++.+|++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            344566677 46799999998  66799999999999999986432        22345678899999999999999988


Q ss_pred             EeC--CCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEE
Q 004885          615 SSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQM  688 (725)
Q Consensus       615 gs~--DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv  688 (725)
                      ++.  ++.+++|+.+++. ++..+.+|...|.+++|+|++..++++++.|+.|++||++..+....+..    ...|+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             EECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             eeccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence            765  6789999999887 78899999999999999999988888999999999999998887766643    4569999


Q ss_pred             EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          689 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       689 ~fspd-g~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +|+|+ +.+|++++.|+.|++||+++++++..|.+|.
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~  248 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ  248 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred             eeccccceeccccccccceeeeeeccccccccccccc
Confidence            99997 4678888999999999999999999999886

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-21  Score=211.31  Aligned_cols=202  Identities=18%  Similarity=0.236  Sum_probs=150.6

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++++.|+.|++|................ ...............+...+.|++|+|++ +||+|+.|++|+|||+
T Consensus       135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~  212 (393)
T d1sq9a_         135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNW-SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL  212 (393)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC-CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred             cccEEEEEcCCCcEEEEEeecCCcccceeeeee-ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEee
Confidence            346888999999999996543221110000000 00001112223344567779999999987 8999999999999999


Q ss_pred             CCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEE-------------ecCCCC
Q 004885          585 ESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTF-------------TGHSTT  642 (725)
Q Consensus       585 ~~~~~i~~l------~~H~~~V~~IafsPd~~~Lasgs~Dg---tIrvWDl~~~~~~l~~~-------------~~h~~~  642 (725)
                      .+++.+..+      .+|...|++|+|+|++++|++|+.|+   .|++||+.++. ++..+             .+|...
T Consensus       213 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-~~~~l~~~~~~~~~~~~~~gH~~~  291 (393)
T d1sq9a_         213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSW  291 (393)
T ss_dssp             TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSC
T ss_pred             cccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccce-eeeeeccccccccceeeeecccCc
Confidence            998877654      56899999999999999999999987   49999999877 45544             379999


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC----------------------CCeEEEEEecCC------
Q 004885          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----------------------SGATQMRFQPRL------  694 (725)
Q Consensus       643 V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~----------------------~~V~sv~fspdg------  694 (725)
                      |++|+|+|+++ +|++|+.|++|+|||+++++++.+++.+                      ..+.++.|.+.+      
T Consensus       292 V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T d1sq9a_         292 VMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  370 (393)
T ss_dssp             EEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             eeeeccCCCCC-eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccc
Confidence            99999999988 7789999999999999999999998742                      235666666532      


Q ss_pred             ----CEEEEEEcCCeEEEEE
Q 004885          695 ----GRILAAAIENYISILD  710 (725)
Q Consensus       695 ----~~Lla~s~Dg~V~IwD  710 (725)
                          ..+++++.|+.|++|.
T Consensus       371 ~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         371 ADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CTTSCEEEEEETTTEEEEEE
T ss_pred             cCCCCEEEEEEcCCeEEEEe
Confidence                3477777788888875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.7e-21  Score=194.54  Aligned_cols=185  Identities=21%  Similarity=0.389  Sum_probs=146.9

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +|++|+.|++|++|+...                   .+.+.++.+|.+.|.+++|++  .+|++|+.|+++++|+....
T Consensus        29 ~l~sgs~Dg~i~vWd~~~-------------------~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVT-------------------GKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             EEEEEETTSCEEEEETTT-------------------CCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCeEEEEECCC-------------------CCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccccccc
Confidence            899999999999995432                   245677889999999999986  48889999988888876432


Q ss_pred             e-------------------------------------------------------------------------------
Q 004885          588 T-------------------------------------------------------------------------------  588 (725)
Q Consensus       588 ~-------------------------------------------------------------------------------  588 (725)
                      .                                                                               
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  167 (342)
T d2ovrb2          88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE  167 (342)
T ss_dssp             EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT
T ss_pred             cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccc
Confidence            1                                                                               


Q ss_pred             -EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          589 -VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       589 -~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                       .+..+.+|...+.+  +.+++.+|++++.|++|++||++... ++..+.+|...|.+++++++   +|++++.|+.|++
T Consensus       168 ~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~i  241 (342)
T d2ovrb2         168 TCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKI  241 (342)
T ss_dssp             EEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEETT---EEEEEETTSCEEE
T ss_pred             eeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccce-eeeEecccccceeEEecCCC---EEEEEcCCCEEEE
Confidence             11122234443443  34467899999999999999999988 78999999999999988764   7889999999999


Q ss_pred             EECCCCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          668 WSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       668 wDl~t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ||+...+....+..    ...+.++.|+  +.++++++.||+|+|||++++++++++.
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            99999888887764    2345555554  5689999999999999999999999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=1.6e-21  Score=199.62  Aligned_cols=157  Identities=20%  Similarity=0.252  Sum_probs=130.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~  632 (725)
                      ....+.+++|+|++++|++|+.|+.|++||+++.+... ....|...|++++|+|++.+|++++.|+.|++||+.+....
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34568999999999999999999999999998876543 34578999999999999999999999999999999876522


Q ss_pred             --eEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          633 --LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       633 --l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~----~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                        ...+.+|...|++++|+|++. +|++|+.|+.|+|||++++.....+..    ...|.++.|. ++.+|++++.|++|
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNI  292 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEE
Confidence              345667899999999999987 777999999999999998765443332    3346666554 56899999999999


Q ss_pred             EEEECC
Q 004885          707 SILDVE  712 (725)
Q Consensus       707 ~IwDl~  712 (725)
                      +|||+.
T Consensus       293 ~iWdl~  298 (299)
T d1nr0a2         293 KFWNVP  298 (299)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-20  Score=192.67  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=156.3

Q ss_pred             ccccCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec
Q 004885          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (725)
Q Consensus       473 ~l~~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (725)
                      .+...+...++.+.|+|++.               +|++|+.|++|++|.....                .....+....
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~---------------~L~s~s~Dg~v~iwd~~~~----------------~~~~~~~~~~   53 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKS---------------LLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSL   53 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEEEETT----------------TTEEEEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCC---------------EEEEEECCCeEEEEEccCC----------------CcceEEEEec
Confidence            35567788899999999887               9999999999999954322                1112333344


Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCC---------------------------------
Q 004885          553 ASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---------------------------------  598 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg-~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~---------------------------------  598 (725)
                      +|.+.|+|++|+|++ .+|++|+.|++|++|++...........+..                                 
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            799999999999864 5899999999999999875443333222111                                 


Q ss_pred             ----------------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          599 ----------------WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       599 ----------------~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                                      ....+.+.+.+..+++++.|+.|++||+.....  .......+...+.++.+.+.....+++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence                            112333444556666777777777777665442  12223334455677777776666888999


Q ss_pred             CCCcEEEEECCCCeeE------EEEe----------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          661 NNSEIRYWSINNGSCA------GVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v------~~~~----------~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      .||.|.+|++......      ..+.          +...|++|+|+|++.+|++|+.||.|+|||+++++++..+..|+
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            9999999998743211      1111          13458999999999999999999999999999999999987543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=7.4e-20  Score=188.15  Aligned_cols=195  Identities=16%  Similarity=0.265  Sum_probs=158.5

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +|++|+.|++|++|+..                   +.+.+..+++|.+.|++++|+++ .+|++|+.|++|++|++...
T Consensus        25 ~l~tgs~Dg~i~vWd~~-------------------~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          25 YVITGADDKMIRVYDSI-------------------NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEEETTTEEEEEETT-------------------TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTT
T ss_pred             EEEEEeCCCeEEEEECC-------------------CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccc
Confidence            89999999999999432                   23567788999999999999985 58999999999999999998


Q ss_pred             eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----------------------eeEEEecCCCCe
Q 004885          588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------------------SLRTFTGHSTTV  643 (725)
Q Consensus       588 ~~i~~l~~H~--~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~----------------------~l~~~~~h~~~V  643 (725)
                      ........+.  ..+..+.+++++.++++++.|++|++||+.+...                      .+.....|...|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  164 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  164 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE
T ss_pred             ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc
Confidence            8776665443  3445667788999999999999999999976541                      112223344445


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      ...  .+++. +++++..|+.|++||+++++.+..+.. ...+.++.|++++.++++++.|+.|++||++++.++..+.+
T Consensus       165 ~~~--~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         165 RTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             EEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ccc--ccccc-eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence            443  44455 777888999999999999999888875 67799999999999999999999999999999999999999


Q ss_pred             CCC
Q 004885          723 SHS  725 (725)
Q Consensus       723 H~s  725 (725)
                      |.+
T Consensus       242 h~~  244 (355)
T d1nexb2         242 HTA  244 (355)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-19  Score=185.59  Aligned_cols=180  Identities=22%  Similarity=0.354  Sum_probs=147.9

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      ..++.++.|+.|++|.                   ......+..+.+|...+.++.+  ++.+|++|+.|++|++||++.
T Consensus       148 ~~~~~~~~d~~i~~~d-------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~  206 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWD-------------------PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  206 (342)
T ss_dssp             SCEEEEETTSCEEEEE-------------------GGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             ceeeeecCCCeEEEee-------------------cccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeeccc
Confidence            3556677777777772                   2233456778888887777766  688999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec---CCCCeEEEEEccCCCeEEEEEeCCC
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS  663 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg  663 (725)
                      ++.+..+.+|...|.++++++  ++|++++.|++|++||+.... ....+..   |...+.++.|+++   ++++|+.||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg  280 (342)
T d2ovrb2         207 GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDG  280 (342)
T ss_dssp             CCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEECSS---EEEEEETTS
T ss_pred             ceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccc-ccccccccceeeeceeecccCCC---eeEEEcCCC
Confidence            999999999999999988875  699999999999999999877 4555554   5567787877654   788999999


Q ss_pred             cEEEEECCCCeeEEEEec------CCCeEEEEEecCCCEEEEEEcCCe----EEEEECCC
Q 004885          664 EIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENY----ISILDVET  713 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~------~~~V~sv~fspdg~~Lla~s~Dg~----V~IwDl~t  713 (725)
                      +|+|||+++++++..+..      ...|++++|+|++..|++|+.||+    |++||+..
T Consensus       281 ~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999988752      346999999999888888888875    99999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.4e-19  Score=185.97  Aligned_cols=212  Identities=19%  Similarity=0.281  Sum_probs=161.8

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccc----cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVG----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~  580 (725)
                      ...++++++.|+.|++|.............    .............+.....|...|.+...  ++++++++..|+.|+
T Consensus       107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~d~~i~  184 (355)
T d1nexb2         107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HGNIVVSGSYDNTLI  184 (355)
T ss_dssp             TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc--ccceeeeecccceee
Confidence            345889999999999997665432211110    00111111222334555667777766554  689999999999999


Q ss_pred             EEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe
Q 004885          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       581 IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs  660 (725)
                      +||+.+++.+..+.++...+.++.|+|++.++++++.|++|++||++++. ++..+.+|...|.+++|+++   +|++++
T Consensus       185 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~~~---~l~~~~  260 (355)
T d1nexb2         185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSDK---FLVSAA  260 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-EEEEECCCSSCCCEEEECSS---EEEEEC
T ss_pred             eeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc-cccccccccccccccccccc---eeeeee
Confidence            99999999999999999999999999999999999999999999999988 78899999999999999753   788999


Q ss_pred             CCCcEEEEECCCCeeEEEEecCCCeEEE-EEecCCCEEEEEEcCCeEEEEECCCCeEEE-EEeCCC
Q 004885          661 NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRL-KLQVSH  724 (725)
Q Consensus       661 ~Dg~I~IwDl~t~~~v~~~~~~~~V~sv-~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~-~l~GH~  724 (725)
                      .||.|++||++++........ ..+.++ .|++++. +++++.|+.|+|||++++++++ .+.+|.
T Consensus       261 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~  324 (355)
T d1nexb2         261 ADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDA  324 (355)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTC
T ss_pred             cccccccccccccceeccccc-CCceEEEEEcCCCC-EEEEEeCCEEEEEECCCCCEEEEEecCCC
Confidence            999999999998877665544 444444 4566654 5566679999999999999885 456664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-18  Score=173.99  Aligned_cols=189  Identities=20%  Similarity=0.380  Sum_probs=156.8

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~  587 (725)
                      +|++|+.|++|++|+..                   +.+.+.++++|.+.|++++|  ++++|++|+.|+.|++|++..+
T Consensus        27 ~l~sgs~Dg~i~vWd~~-------------------~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          27 KIVSGLRDNTIKIWDKN-------------------TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EEEEEESSSCEEEEESS-------------------SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEEEeCCCeEEEEECC-------------------CCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            89999999999999432                   23567788999999999988  6789999999999999999998


Q ss_pred             eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 004885          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (725)
Q Consensus       588 ~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~--~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I  665 (725)
                      ........+....  ..+.+....++++..++.+++||+.....  ....+..|...|..+.+.+.   .+++++.|+.|
T Consensus        86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i  160 (293)
T d1p22a2          86 EMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTI  160 (293)
T ss_dssp             CEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEE
T ss_pred             ccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCCCce
Confidence            8877776554443  34455667899999999999999987652  34556678888988888765   56788889999


Q ss_pred             EEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       666 ~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      ++||+++++++..+.. ...+..+.+++  .++++++.|+.|+|||+++.+++..+.+|.
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             eeecCCCCcEEEEEcccccccccccCCC--CeEEEecCCCEEEEEecccceeeeeecccc
Confidence            9999999999988886 55677777764  689999999999999999999999998875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.4e-20  Score=188.80  Aligned_cols=151  Identities=13%  Similarity=0.240  Sum_probs=125.1

Q ss_pred             EEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          560 SCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       560 ~i~fSpdg~~LaSgs~Dg-~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      +.++++++..+++++.|+ .|++|++........+. .|...|++++|+|++.+|++|+.|+.|++||+.++......+.
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            345666788888887775 79999998766555543 4778999999999999999999999999999998874445577


Q ss_pred             cCCCCeEEEEEccCC---------CeEEEEEeCCCcEEEEECCC-CeeEEEEe-cCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          638 GHSTTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g---------~~llaSgs~Dg~I~IwDl~t-~~~v~~~~-~~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                      +|...|.+++|+|.+         ..++++|+.|+.|+|||+++ .+++..+. +...|++++|+|+ ..|++++.|+.|
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~-~~l~s~g~D~~v  281 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACI  281 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-TEEEEEETTSCE
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC-CEEEEEECCCeE
Confidence            899999999999854         34788999999999999977 45555554 3678999999998 579999999999


Q ss_pred             EEEEC
Q 004885          707 SILDV  711 (725)
Q Consensus       707 ~IwDl  711 (725)
                      ++||+
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=1.4e-18  Score=180.62  Aligned_cols=192  Identities=8%  Similarity=-0.024  Sum_probs=158.0

Q ss_pred             EEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE
Q 004885          484 LLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (725)
Q Consensus       484 ~l~fs~-dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~  562 (725)
                      ...|+| ||.               +++.++ ++.|.+|....+                   . +..+ +|...|.+++
T Consensus         7 ~~~fSP~dG~---------------~~a~~~-~g~v~v~d~~~~-------------------~-~~~~-~~~~~v~~~~   49 (360)
T d1k32a3           7 AEDFSPLDGD---------------LIAFVS-RGQAFIQDVSGT-------------------Y-VLKV-PEPLRIRYVR   49 (360)
T ss_dssp             EEEEEECGGG---------------CEEEEE-TTEEEEECTTSS-------------------B-EEEC-SCCSCEEEEE
T ss_pred             cccccCCCCC---------------EEEEEE-CCeEEEEECCCC-------------------c-EEEc-cCCCCEEEEE
Confidence            356888 776               666665 478999943211                   1 1222 6899999999


Q ss_pred             EcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEecCC
Q 004885          563 FSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (725)
Q Consensus       563 fSpdg~~LaSgs~Dg--~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~  640 (725)
                      |+|||++|++++.|.  .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+.. +...+..|.
T Consensus        50 ~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~  127 (360)
T d1k32a3          50 RGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSRE  127 (360)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSS
T ss_pred             ECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc-eeeeeeccc
Confidence            999999998776553  7999999887655 677899999999999999999999999999999999887 678888899


Q ss_pred             CCeEEEEEccCCCeEEEEEe---------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          641 TTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       641 ~~V~sl~fsP~g~~llaSgs---------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ..+.+++|+|+|.+++++..         .++.+++||+.+++......+...+..++|+|+|++|++++.|+.+.+||.
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence            99999999999996665432         234699999999988777777778999999999999999999999999997


Q ss_pred             CCC
Q 004885          712 ETQ  714 (725)
Q Consensus       712 ~tg  714 (725)
                      ...
T Consensus       208 ~~~  210 (360)
T d1k32a3         208 VVL  210 (360)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=2.1e-18  Score=179.15  Aligned_cols=209  Identities=11%  Similarity=0.016  Sum_probs=160.6

Q ss_pred             CCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCC--cEEEecCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 004885          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD--NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (725)
Q Consensus       477 s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~--~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (725)
                      .+...+..+.|+||+.               +|+.++.|.  .|++|....+                    ....+..|
T Consensus        40 ~~~~~v~~~~~spDg~---------------~l~~~~~~~g~~v~v~d~~~~--------------------~~~~~~~~   84 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTK---------------VAFIHGTREGDFLGIYDYRTG--------------------KAEKFEEN   84 (360)
T ss_dssp             SCCSCEEEEEECSSSE---------------EEEEEEETTEEEEEEEETTTC--------------------CEEECCCC
T ss_pred             cCCCCEEEEEECCCCC---------------EEEEEEcCCCCEEEEEECCCC--------------------cEEEeeCC
Confidence            3455788999999886               565554443  6788844322                    24456789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVW  624 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~DgtIrvW  624 (725)
                      ...|.+++|+||+++|++++.++.+++|++.+++....+..|...+.+++|+|++++|+.+.          .++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999998654          34579999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCee-----------------------------
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----------------------------  675 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~-----------------------------  675 (725)
                      |+.++.  ...+..+...+..+.|+|+|+ .|++++.++.+++||......                             
T Consensus       165 d~~~~~--~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  241 (360)
T d1k32a3         165 DMEGRK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT  241 (360)
T ss_dssp             ETTTTE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred             ccccCc--eeeecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCc
Confidence            998865  445556777888899999988 455677777777776421100                             


Q ss_pred             ---------------------------E-------------------------------EEEe--------cCCCeEEEE
Q 004885          676 ---------------------------A-------------------------------GVFK--------CQSGATQMR  689 (725)
Q Consensus       676 ---------------------------v-------------------------------~~~~--------~~~~V~sv~  689 (725)
                                                 +                               ..+.        +.+.|.+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~  321 (360)
T d1k32a3         242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLR  321 (360)
T ss_dssp             CCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred             ccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEE
Confidence                                       0                               0000        012367899


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       690 fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      |+|||++|++++.||.|++||+++++...++.-+
T Consensus       322 ~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             ECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             ECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            9999999999999999999999999777766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.2e-18  Score=177.07  Aligned_cols=202  Identities=12%  Similarity=0.093  Sum_probs=141.7

Q ss_pred             cCCCCCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 004885          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (725)
Q Consensus       476 ~s~s~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (725)
                      ..+...++++.|++                   |++|+.|++|++|+....                        ..+|+
T Consensus        10 ~gH~~~I~~l~~s~-------------------l~sgs~Dg~v~~Wd~~~~------------------------~~~h~   46 (287)
T d1pgua2          10 SGHNKGITALTVNP-------------------LISGSYDGRIMEWSSSSM------------------------HQDHS   46 (287)
T ss_dssp             CCCSSCEEEEETTT-------------------TEEEETTSCEEETTTTEE------------------------ECCCC
T ss_pred             CCCCCceEEEEECc-------------------EEEEeCCCeEEEEECCCC------------------------CCCCC
Confidence            34566677776653                   588999999999943221                        13455


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEC----------------------------------CCCeEEEEeccCCCCeE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCT----------------------------------ESFTVKSTLEEHTQWIT  601 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl----------------------------------~~~~~i~~l~~H~~~V~  601 (725)
                      ..|.+++|+++. .+++++.|++|++|++                                  .+++.+..+.. ...  
T Consensus        47 ~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  122 (287)
T d1pgua2          47 NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSP--  122 (287)
T ss_dssp             SCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSC--
T ss_pred             CCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-cce--
Confidence            556666655432 3455556666666544                                  33333333332 222  


Q ss_pred             EEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-
Q 004885          602 DVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-  679 (725)
Q Consensus       602 ~IafsPd~~~Lasgs~Dg-tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-  679 (725)
                      ..++++++..+++++.|+ .|++|++............|...|++++|+|++. +|++|+.||.|++||+.++..+... 
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccc
Confidence            345666778888887764 7999999866533333445778899999999988 6778999999999999998876543 


Q ss_pred             e-cCCCeEEEEEecC----------CCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCC
Q 004885          680 K-CQSGATQMRFQPR----------LGRILAAAIENYISILDVET-QVCRLKLQVSHS  725 (725)
Q Consensus       680 ~-~~~~V~sv~fspd----------g~~Lla~s~Dg~V~IwDl~t-g~~v~~l~GH~s  725 (725)
                      . +...|.+++|+|.          +.+|++++.|+.|+|||+++ ++++..+.+|.+
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~  259 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD  259 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence            2 3677999999875          45799999999999999977 578888889864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=1.8e-18  Score=188.27  Aligned_cols=199  Identities=11%  Similarity=0.031  Sum_probs=146.6

Q ss_pred             CCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004885          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (725)
Q Consensus       505 ~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl  584 (725)
                      ...++++.+.|+.|++|+                   ..+.+.+.++..|. .+..++|||||++|++++.|++|++||+
T Consensus        31 ~~~~~V~~~~dg~v~vwD-------------------~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~   90 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVD-------------------GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDL   90 (426)
T ss_dssp             GGEEEEEETTTTEEEEEE-------------------TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             CeEEEEEEcCCCEEEEEE-------------------CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEc
Confidence            344678888999999993                   34446777787774 5999999999999999999999999999


Q ss_pred             CCCeEEEE-----eccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCe---------------------------
Q 004885          585 ESFTVKST-----LEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDY---------------------------  631 (725)
Q Consensus       585 ~~~~~i~~-----l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~---------------------------  631 (725)
                      .+++....     ..+|...+.+++|+||+++|+++ ..++++++||..+...                           
T Consensus        91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (426)
T d1hzua2          91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA  170 (426)
T ss_dssp             TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEE
Confidence            88764322     23455566667777777776444 4577777776442110                           


Q ss_pred             --------------------------------------------------------------------------------
Q 004885          632 --------------------------------------------------------------------------------  631 (725)
Q Consensus       632 --------------------------------------------------------------------------------  631 (725)
                                                                                                      
T Consensus       171 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (426)
T d1hzua2         171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  250 (426)
T ss_dssp             CSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc
Confidence                                                                                            


Q ss_pred             --------------------------------------------eeEEEecCCCCeEEEEEccCCCeEEE------EEeC
Q 004885          632 --------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLC------SCDN  661 (725)
Q Consensus       632 --------------------------------------------~l~~~~~h~~~V~sl~fsP~g~~lla------Sgs~  661 (725)
                                                                  ....+.+|...+..++|+|++.++++      ++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~  330 (426)
T d1hzua2         251 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  330 (426)
T ss_dssp             CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHH
T ss_pred             ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCccc
Confidence                                                        01123345666788899999886654      2345


Q ss_pred             CCcEEEEECCCCeeEEEEe----------cCCCeEEEEEecCCCEEEEEE-----cCCeEEEEECCCCeEEEEEeCC
Q 004885          662 NSEIRYWSINNGSCAGVFK----------CQSGATQMRFQPRLGRILAAA-----IENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~----------~~~~V~sv~fspdg~~Lla~s-----~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      |++|+|||+.+++++.++.          +...|..++|+|||+++++++     .++.|+|||.+|++.+..++++
T Consensus       331 ~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         331 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence            7899999999988776552          245699999999999886543     3688999999999999999886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-17  Score=166.34  Aligned_cols=170  Identities=18%  Similarity=0.337  Sum_probs=136.2

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004885          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (725)
Q Consensus       545 ~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvW  624 (725)
                      +..+....+|...|+|++|  |+++||||+.||+|+|||+.+++++.++.+|...|++|+|  ++++|++|+.|++|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            3556677789999999776  7999999999999999999999999999999999999987  56899999999999999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE---e-cCCCeEEEEEecCCCEEEEE
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K-CQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~---~-~~~~V~sv~fspdg~~Lla~  700 (725)
                      ++..+. .......+.....  .+.+... .++++..++.+++||+.........   . +...|..+.+.+  ..++++
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~  154 (293)
T d1p22a2          81 DVNTGE-MLNTLIHHCEAVL--HLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA  154 (293)
T ss_dssp             ESSSCC-EEEEECCCCSCEE--EEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred             cccccc-ccccccccccccc--ccccccc-ceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence            999887 4444444443333  3344444 5668888999999999876543322   2 245677777665  578889


Q ss_pred             EcCCeEEEEECCCCeEEEEEeCCC
Q 004885          701 AIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                      +.|+.|++||+++++++..+.+|.
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cCCCceeeecCCCCcEEEEEcccc
Confidence            999999999999999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6.6e-19  Score=179.18  Aligned_cols=168  Identities=8%  Similarity=0.016  Sum_probs=129.6

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~---i~~l~~H~~~V~~IafsPd-~~~Lasgs~DgtI  621 (725)
                      +.+....+|.+.|++|+|+|++++||+|+.|++|+|||++....   +....+|..+|++++|+|+ +.+|++|+.|++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45667789999999999999999999999999999999976432   2333479999999999986 5589999999999


Q ss_pred             EEEECCCCCeeeEEEecCCCC-eEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----c---CCCeEEEEEecC
Q 004885          622 RVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----C---QSGATQMRFQPR  693 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~-V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~----~---~~~V~sv~fspd  693 (725)
                      ++|++.... .......+... .....+.++.. .+++++.|+.+++||++.+.......    .   ......+.+.++
T Consensus        82 ~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          82 LKVDLIGSP-SFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSS-SEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eeeeccccc-ccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            999999877 34444444433 34444555544 77799999999999997543332222    1   233566778888


Q ss_pred             CCEEEEEEcCCeEEEEECCCCe
Q 004885          694 LGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       694 g~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                      +..+++++.|+.|++||+++.+
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCT
T ss_pred             CCceeeecCCCcEEEEecccCc
Confidence            8899999999999999998763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.6e-16  Score=162.84  Aligned_cols=191  Identities=12%  Similarity=0.090  Sum_probs=139.8

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec--CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWC  583 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~i~fSpdg~~L-aSgs~Dg~V~IWd  583 (725)
                      +|+++++.|++|.+|+...                   .+.+..++  .+...+.+++|+|||++| ++++.|+.|++||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-------------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCC-------------------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence            5899999999999994422                   24455554  345668899999999987 4667899999999


Q ss_pred             CCCCeEEEEeccC----------------------------------------------------------CCCeEEEEE
Q 004885          584 TESFTVKSTLEEH----------------------------------------------------------TQWITDVRF  605 (725)
Q Consensus       584 l~~~~~i~~l~~H----------------------------------------------------------~~~V~~Iaf  605 (725)
                      +.+++.+..+..+                                                          ...+.+++|
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  142 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW  142 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEE
T ss_pred             CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEE
Confidence            9888766544321                                                          123445677


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCC-------------------------------------------------------
Q 004885          606 SPSLSRLATSSADRTVRVWDTENPD-------------------------------------------------------  630 (725)
Q Consensus       606 sPd~~~Lasgs~DgtIrvWDl~~~~-------------------------------------------------------  630 (725)
                      +|+++++++++.+  +.+||..+..                                                       
T Consensus       143 s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T d1pbyb_         143 ARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             CTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             cCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc
Confidence            7777777766533  4556654321                                                       


Q ss_pred             ----------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEE
Q 004885          631 ----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (725)
Q Consensus       631 ----------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~  700 (725)
                                .....+..+...+..+.++|++.. ++.+  ++.|++||+.+++++..+.....+.+++|+|||.+|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEE
Confidence                      011122234455666777777763 3333  578999999999999999988889999999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEe
Q 004885          701 AIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       701 s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      +.|+.|+|||+++++.+.+++
T Consensus       298 ~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         298 GALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEE
T ss_pred             eCCCcEEEEECCCCcEEEEEE
Confidence            999999999999999999886

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.1e-16  Score=175.41  Aligned_cols=194  Identities=11%  Similarity=-0.005  Sum_probs=157.5

Q ss_pred             cEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004885          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (725)
Q Consensus       507 ~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~  586 (725)
                      -++++.+.|++|.+|                   +..+.+.+..+..|. .+..++|||||++|++++.|++|++||+.+
T Consensus        33 ~~~v~~~d~g~v~v~-------------------D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALI-------------------DGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEE-------------------ETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEE-------------------ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            456889999999999                   444556777777764 699999999999999999999999999987


Q ss_pred             CeE--EEE---eccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeEEEec-----------CCCCeEEEEEc
Q 004885          587 FTV--KST---LEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH  649 (725)
Q Consensus       587 ~~~--i~~---l~~H~~~V~~IafsPd~~~L-asgs~DgtIrvWDl~~~~~~l~~~~~-----------h~~~V~sl~fs  649 (725)
                      ++.  +..   ..+|.+.+.+.+|+||+++| +++..+++|+|||..++. ++..+..           +......+.++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEEC
Confidence            653  222   34566677777888999986 677889999999999887 5665543           34557789999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEe
Q 004885          650 PSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       650 P~g~~llaSgs~Dg~I~IwDl~t~~~v~--~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |++..++++...++.|.+||..+.+...  .+.....+..++|+|+|+++++++. ++.|.++|.++++.+..+.
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            9999888899889999999999876544  4455677899999999999888877 5789999999998887765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=8.1e-16  Score=158.09  Aligned_cols=200  Identities=7%  Similarity=0.035  Sum_probs=146.8

Q ss_pred             CCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEE-EEeCCCcEE
Q 004885          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKAV  580 (725)
Q Consensus       503 ~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~i~fSpdg~~La-Sgs~Dg~V~  580 (725)
                      ...++|+++++.|++|.+|+.                   .+.+.+.+++ .|...+.+++|+|||++++ +++.++.|+
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~-------------------~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDV-------------------ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEET-------------------TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCcEEEEEcCCCEEEEEEC-------------------CCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence            344569999999999999944                   2335566665 4566789999999999874 556789999


Q ss_pred             EEECCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCC--------------
Q 004885          581 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTEN--------------  628 (725)
Q Consensus       581 IWdl~~~~~i~~l~~H~------~~V~~IafsPd~~~Lasgs------------~DgtIrvWDl~~--------------  628 (725)
                      +||+.+++.+..+....      ..+..++|+||++++++++            .+..+.+||..+              
T Consensus        66 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  145 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  145 (346)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence            99999998887664322      2356788888888776653            244445554321              


Q ss_pred             ---------------------------CC---------------------------------------------------
Q 004885          629 ---------------------------PD---------------------------------------------------  630 (725)
Q Consensus       629 ---------------------------~~---------------------------------------------------  630 (725)
                                                 ..                                                   
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  225 (346)
T ss_dssp             SCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             ceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence                                       11                                                   


Q ss_pred             ----------------eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCC
Q 004885          631 ----------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL  694 (725)
Q Consensus       631 ----------------~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg  694 (725)
                                      .....+..|...+.++.+++++..++ .+. ++.|++||+.+++.+..+.....+.+++|+|||
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG  303 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG  303 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSS
T ss_pred             ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-Eec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCC
Confidence                            00011123344566677777776544 333 467999999999999999887789999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          695 GRILAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       695 ~~Lla~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ++|++++.|+.|+|||+++++++.+++-+
T Consensus       304 ~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            99999999999999999999999999843

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=1.9e-14  Score=145.06  Aligned_cols=191  Identities=14%  Similarity=0.144  Sum_probs=147.3

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~  586 (725)
                      +++++..++.+.+|.....                   +....+.. ...+.+++|+|+++.++ ++..++.+.+|+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~  147 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSN-------------------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (301)
T ss_dssp             EEEEETTTTEEEEEETTTT-------------------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccceeeecccccc-------------------eeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence            4555666777777733222                   33444443 35688999999999765 555688999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe--CCC
Q 004885          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNS  663 (725)
Q Consensus       587 ~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs--~Dg  663 (725)
                      ...+..+..+ ..+.+++++|++..+++++.+ +.+.+|+..... ....+. ....+..++|++++..+++++.  .++
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             cceeeecccC-CCceEEEeeccccceeeeccccccccccccccee-eeeccc-ccCCcceeeccccccccccccccceee
Confidence            9988887754 568899999999988888765 567777777654 444444 3456788999999997776654  346


Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Ll-a~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|++||+.+++++..+.....+..++|+|||++|+ +++.|+.|+|||+++++++.+++
T Consensus       225 ~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            89999999999999998878899999999999875 45568999999999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.63  E-value=8e-14  Score=140.44  Aligned_cols=191  Identities=18%  Similarity=0.196  Sum_probs=155.0

Q ss_pred             EEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCe
Q 004885          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFT  588 (725)
Q Consensus       510 asGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~  588 (725)
                      ++++.|++|.+|+...                   .+.+..++.. ..+..++|+|||++|+ +++.++.|++||+.+++
T Consensus         6 V~~~~~~~v~v~D~~t-------------------~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTS-------------------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEETTTTEEEEEETTT-------------------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCC-------------------CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            4577889999994322                   2444455433 4578999999999875 66688999999999999


Q ss_pred             EEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 004885          589 VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (725)
Q Consensus       589 ~i~~l~~H~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~I  667 (725)
                      .+..+..|. .+..++|++++.+++ ++..++.+.+||..++. .+..+.. ...+.+++|+|++..+++++..++.+.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeecccccce-eeeeccc-cccceEEEeecCCCeeeeeeccccceee
Confidence            999988765 468999999988665 45567899999999876 5555554 4567899999999988888888999999


Q ss_pred             EECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCC
Q 004885          668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       668 wDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~D-g~V~IwDl~tg~~v~~l~GH  723 (725)
                      |+..+...+..+.....+..++|+|++..+++++.+ +.+.+|+....+....+..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (301)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc
Confidence            999999999999988889999999999998888775 77889998888887776654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.7e-13  Score=138.33  Aligned_cols=154  Identities=10%  Similarity=0.086  Sum_probs=127.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeEEEecCCC---
Q 004885          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHST---  641 (725)
Q Consensus       568 ~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H--~~~V~~IafsPd~~~La-sgs~DgtIrvWDl~~~~~~l~~~~~h~~---  641 (725)
                      ++|++++.|++|+|||+.+.+.+.++..+  ...+.+++|+||+++++ +++.++.|.+||+.+++ .+..+..+..   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecCCCccc
Confidence            48999999999999999999999888643  45678999999999875 56679999999999988 5666654432   


Q ss_pred             --CeEEEEEccCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004885          642 --TVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (725)
Q Consensus       642 --~V~sl~fsP~g~~llaSgs-----------~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~I  708 (725)
                        .+..++|+|+++.+++++.           .+..+.+||..++.++..+.....+..++|+|+|.++++++.  .+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence              3457899999997765543           467899999999999999988888999999999999988754  4788


Q ss_pred             EECCCCeEEEEEeCCC
Q 004885          709 LDVETQVCRLKLQVSH  724 (725)
Q Consensus       709 wDl~tg~~v~~l~GH~  724 (725)
                      ||..+++++..+..+.
T Consensus       159 ~d~~~~~~~~~~~~~~  174 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EETTTTEEEEEECSTT
T ss_pred             eeeecCcEEEEeecCC
Confidence            9999999999887653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.2e-12  Score=142.95  Aligned_cols=204  Identities=9%  Similarity=0.040  Sum_probs=146.5

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (725)
                      ..+..++|+|||.               ++++++.|++|++|+....              +.....++....+|.+.+.
T Consensus        62 ~~~~~v~fSpDG~---------------~l~~~s~dg~v~~~d~~t~--------------~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          62 YAVHISRLSASGR---------------YLFVIGRDGKVNMIDLWMK--------------EPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             SCEEEEEECTTSC---------------EEEEEETTSEEEEEETTSS--------------SCCEEEEEECCSEEEEEEE
T ss_pred             CCeeEEEECCCCC---------------EEEEEcCCCCEEEEEeeCC--------------CceEEEEEecCCCCCCeEE
Confidence            3466777777776               8899999999999965333              1222234444455666778


Q ss_pred             EEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccC-----------CCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 004885          560 SCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (725)
Q Consensus       560 ~i~fSpdg~~L-aSgs~Dg~V~IWdl~~~~~i~~l~~H-----------~~~V~~IafsPd~~~La-sgs~DgtIrvWDl  626 (725)
                      +..|+|||++| ++++.+++|+|||..+++++..+..|           ......|.++|++.+++ +...++.|.+||.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            88899999976 67888999999999999988877643           34566788999988764 5566899999999


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeEEEEEecCCCEEEEE
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAA  700 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~------~~V~sv~fspdg~~Lla~  700 (725)
                      .+..........+...+.+++|+|+|+++++++..+..|.++|..+++.+..+...      .......+... ..+.+.
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~  271 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF-GPVWAT  271 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT-EEEEEE
T ss_pred             cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC-Cceecc
Confidence            88763323333456778999999999988888888889999999999888777641      22333333333 333333


Q ss_pred             Ec--CCeEEEEECCC
Q 004885          701 AI--ENYISILDVET  713 (725)
Q Consensus       701 s~--Dg~V~IwDl~t  713 (725)
                      ..  ++.|.+|+..+
T Consensus       272 ~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         272 SHMGDDSVALIGTDP  286 (432)
T ss_dssp             EBSSSSEEEEEECCT
T ss_pred             cccCCceEEeccccc
Confidence            33  67788887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.3e-12  Score=128.95  Aligned_cols=206  Identities=11%  Similarity=0.067  Sum_probs=137.2

Q ss_pred             CCeeEEEEecCCCccccccCCccCCCCcEE-EEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 004885          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (725)
Q Consensus       480 ~~~s~l~fs~dg~~~la~~s~~~~~~~~~l-asGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (725)
                      ..+..++|+|||.               +| +++..|+.|++|......               ...... ....+...+
T Consensus        37 ~~v~~la~spDG~---------------~L~v~~~~d~~i~~~~i~~~~---------------~~~~~~-~~~~~~~~p   85 (333)
T d1ri6a_          37 GQVQPMVVSPDKR---------------YLYVGVRPEFRVLAYRIAPDD---------------GALTFA-AESALPGSL   85 (333)
T ss_dssp             SCCCCEEECTTSS---------------EEEEEETTTTEEEEEEECTTT---------------CCEEEE-EEEECSSCC
T ss_pred             CCEeEEEEeCCCC---------------EEEEEECCCCeEEEEEEeCCC---------------CcEEEe-eecccCCCc
Confidence            3456667777765               55 555568999999543321               111111 122344557


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeE
Q 004885          559 ESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLR  634 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~~l~  634 (725)
                      .+++|+|||++|++++. +++|.+|+........  ....+...+.++.|+|+++++++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            88999999999998885 6689999887655433  33456677888999999988877764 45688887654321000


Q ss_pred             ----------------------------------------------------EEe------cCCCCeEEEEEccCCCeEE
Q 004885          635 ----------------------------------------------------TFT------GHSTTVMSLDFHPSKEDLL  656 (725)
Q Consensus       635 ----------------------------------------------------~~~------~h~~~V~sl~fsP~g~~ll  656 (725)
                                                                          ...      ........++++++++.++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                                                                000      0112345677888888888


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEE----ecCCCeEEEEEecCCCEEEEEEc-CCeEEEE--ECCCCeE
Q 004885          657 CSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAI-ENYISIL--DVETQVC  716 (725)
Q Consensus       657 aSgs~Dg~I~IwDl~t~~~v~~~----~~~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw--Dl~tg~~  716 (725)
                      +++..++.+.+|++........+    .....+.+++|+|||++|++++. ++.|+||  |.++|++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            88888888999988765433222    22456789999999999888765 5889998  5577754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1.7e-12  Score=134.49  Aligned_cols=166  Identities=13%  Similarity=0.088  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccC---------------------------------------
Q 004885          558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEH---------------------------------------  596 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs--~Dg~V~IWdl~~~~~i~~l~~H---------------------------------------  596 (725)
                      ...++|+++++++++++  .+..+.+|+..+++.+..+..+                                       
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            45688999999887764  4568899999887665543221                                       


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eEEEecCC----------CCeEEEEEccCCCeEEEEE
Q 004885          597 ------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS----------TTVMSLDFHPSKEDLLCSC  659 (725)
Q Consensus       597 ------~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~-l~~~~~h~----------~~V~sl~fsP~g~~llaSg  659 (725)
                            ...+..+.+.+++..++.++.++.+.+|++..+... +.....+.          .....+++++++..++++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~  267 (355)
T d2bbkh_         188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  267 (355)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             cccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEe
Confidence                  111223455556667788888999999999876521 11122111          2234588999998776655


Q ss_pred             eCC---------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EE-EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          660 DNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-IL-AAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       660 s~D---------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Ll-a~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ...         ..|++||+.+++.+..+.....+.+++|+|||+. ++ +++.|+.|+|||++++++++++.++
T Consensus       268 ~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             ccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            432         3699999999999998887777999999999974 33 3445899999999999999999865

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=4.4e-13  Score=145.05  Aligned_cols=145  Identities=7%  Similarity=-0.064  Sum_probs=113.8

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee----EEEecCCCCeE
Q 004885          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGHSTTVM  644 (725)
Q Consensus       569 ~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l----~~~~~h~~~V~  644 (725)
                      ++++++.|++|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++...    ....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778899999999999999999998764 58999999999999999999999999999876221    22235666678


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004885          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-ENYISILDV  711 (725)
Q Consensus       645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~------------~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl  711 (725)
                      +++|+|||+++++++..++.|++||..++.++..+..            ......+.+++++..++.... .+.|.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            8889999998888888899999999999988877653            223455666777666665554 355666665


Q ss_pred             CCC
Q 004885          712 ETQ  714 (725)
Q Consensus       712 ~tg  714 (725)
                      ..+
T Consensus       193 ~~~  195 (426)
T d1hzua2         193 KDI  195 (426)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=1.6e-11  Score=128.15  Aligned_cols=170  Identities=8%  Similarity=-0.073  Sum_probs=122.2

Q ss_pred             CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~-LaSgs~Dg~V~IWdl~~~~~i~~l~~H~------~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      .+...+.++.|+|+++. +++.+.|+++.+|+...+........+.      .....+.+.+++. ++..+.++.+.+|+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  240 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQAD  240 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEE
Confidence            34455778999999885 4678899999999998887766554322      2234455565554 45566789999999


Q ss_pred             CCCCCee-eEEEecCC----------CCeEEEEEccCCCeEE---------EEEeCCCcEEEEECCCCeeEEEEecCCCe
Q 004885          626 TENPDYS-LRTFTGHS----------TTVMSLDFHPSKEDLL---------CSCDNNSEIRYWSINNGSCAGVFKCQSGA  685 (725)
Q Consensus       626 l~~~~~~-l~~~~~h~----------~~V~sl~fsP~g~~ll---------aSgs~Dg~I~IwDl~t~~~v~~~~~~~~V  685 (725)
                      ....... +..+..+.          .....+++++++..++         ++...++.|.+||+.+++.+..+.....+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~  320 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCe
Confidence            8876521 11111111          2234456666665433         34455678999999999999999888889


Q ss_pred             EEEEEecCCCEE--EEEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          686 TQMRFQPRLGRI--LAAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       686 ~sv~fspdg~~L--la~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                      ..++|+|||+++  ++++.|++|+|||+.+++.++++.+|
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            999999999853  45667899999999999999999866

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7.4e-12  Score=127.83  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=136.0

Q ss_pred             EEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004885          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES  586 (725)
Q Consensus       508 ~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~  586 (725)
                      ++++++.|++|++|......                .+..+.. ..|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~----------------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCC----------------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            45778899999999553321                1223333 35778899999999999886555 589999999976


Q ss_pred             CeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-eeEEEecCCCCeEEEEEccCCCeEEEEEeC
Q 004885          587 FTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (725)
Q Consensus       587 ~~~i~~l---~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~~~~-~l~~~~~h~~~V~sl~fsP~g~~llaSgs~  661 (725)
                      ......+   ..+...+..++|+||+++|++++. +++|.+|+...... .......+...+.++.|+|+++.+++....
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence            4322222   234556788999999999999885 67899999876652 233344566778999999999987777777


Q ss_pred             CCcEEEEECCCCeeEEEE-----e--cCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          662 NSEIRYWSINNGSCAGVF-----K--CQSGATQMRFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~-----~--~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                      +..|.+|+..........     .  .......++|++++.+++.... .+.+.+|++..
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence            788999998765332211     1  1455788999999988877665 56778887643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.40  E-value=1.8e-12  Score=132.54  Aligned_cols=160  Identities=12%  Similarity=0.048  Sum_probs=123.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeEEEec
Q 004885          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       561 i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Las-gs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      ++|++++++|++++.|++|.|||+.+++.+.++. .|...+.+++|+||++++++ +..++.|++||+.+++ .+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~-~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-NTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe-eeeeecc
Confidence            4688999999999999999999999999999886 45667899999999998755 5578999999999887 4555443


Q ss_pred             CC------CCeEEEEEccCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEEe---cCCCeEEEEEecCCCEEE
Q 004885          639 HS------TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRIL  698 (725)
Q Consensus       639 h~------~~V~sl~fsP~g~~llaSgs-----------~Dg~I~IwDl~t~~~v~~~~---~~~~V~sv~fspdg~~Ll  698 (725)
                      ..      ..+..++|+|+|+.++++..           .+..+.+||..+++....+.   ....+..+.+++++..++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            22      23567899999997776542           46789999998876544332   345677777777765443


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEeCCC
Q 004885          699 AAAIENYISILDVETQVCRLKLQVSH  724 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~~l~GH~  724 (725)
                       .  ++.+.+||+.+++.+..+..|.
T Consensus       161 -~--~~~~~~~~~~~~~~~~~~~~~~  183 (346)
T d1jmxb_         161 -A--GPDIYKMDVKTGKYTVALPLRN  183 (346)
T ss_dssp             -E--SSSEEEECTTTCCEEEEECSTT
T ss_pred             -e--CCcceEEEccCCCEEEEEecCC
Confidence             3  3569999999999999987653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.27  E-value=1.3e-10  Score=121.05  Aligned_cols=165  Identities=13%  Similarity=-0.002  Sum_probs=126.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------
Q 004885          552 PASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------  617 (725)
Q Consensus       552 ~~H~~~V~~i~fSpdg~~LaSg-----s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~---------  617 (725)
                      ..+.+++.+++++|||+.+++.     +.++.|.+||..+++.+..+..+...  .++|+||+++|++++.         
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            3577889999999999988764     23457999999999999988766543  7999999999988753         


Q ss_pred             -CCeEEEEECCCCCeeeEEEecCCCCe-------EEEEEccCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCeEEE
Q 004885          618 -DRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQM  688 (725)
Q Consensus       618 -DgtIrvWDl~~~~~~l~~~~~h~~~V-------~sl~fsP~g~~llaSg-s~Dg~I~IwDl~t~~~v~~~~~~~~V~sv  688 (725)
                       ++.|.+||+.+++ .+..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+.....   ..+.++
T Consensus        95 ~~~~v~v~D~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFL-PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCc-EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence             5789999999987 566665554433       4577888888665443 44667889998877665544   346788


Q ss_pred             EEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeC
Q 004885          689 RFQPRLGRI-LAAAIENYISILDVETQVCRLKLQV  722 (725)
Q Consensus       689 ~fspdg~~L-la~s~Dg~V~IwDl~tg~~v~~l~G  722 (725)
                      .|+|++..+ ++.+.|+.+.+||..++++...+..
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence            999998865 4567799999999999887766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=7.4e-11  Score=124.21  Aligned_cols=165  Identities=9%  Similarity=-0.003  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCC-------eEEEEEcCCCCEEEEEeCC------------
Q 004885          559 ESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQW-------ITDVRFSPSLSRLATSSAD------------  618 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~H~~~-------V~~IafsPd~~~Lasgs~D------------  618 (725)
                      ..++|+|||++|+++. .++.|.+||+.+.+.+..+..+...       ...+.+++++..++....+            
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            4689999999988776 5789999999999888776543322       1233344444433332221            


Q ss_pred             ------------------------CeEEEEECCCCCeeeE-EEecC----------CCCeEEEEEccCCCeEEEEEeCC-
Q 004885          619 ------------------------RTVRVWDTENPDYSLR-TFTGH----------STTVMSLDFHPSKEDLLCSCDNN-  662 (725)
Q Consensus       619 ------------------------gtIrvWDl~~~~~~l~-~~~~h----------~~~V~sl~fsP~g~~llaSgs~D-  662 (725)
                                              +.+.++++......+. ....+          ......+++++++..++++...+ 
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~  286 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS  286 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred             ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC
Confidence                                    2222333322220000 00000          01123477888888776655433 


Q ss_pred             -------CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCE-EE-EEEcCCeEEEEECCCCeEEEEEeCC
Q 004885          663 -------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-IL-AAAIENYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       663 -------g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~-Ll-a~s~Dg~V~IwDl~tg~~v~~l~GH  723 (725)
                             ..|.+||..+++.+..+.....+.+++|+|||+. ++ ++..|+.|+|||..+++++.+++..
T Consensus       287 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence                   2599999999999988887777999999999974 44 4445899999999999999998743

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=3.6e-09  Score=108.72  Aligned_cols=163  Identities=10%  Similarity=0.018  Sum_probs=109.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCeEEEEeccCC-------CCeEEEEEcCC
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATG----------GHDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPS  608 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSg----------s~Dg~V~IWdl~~~~~i~~l~~H~-------~~V~~IafsPd  608 (725)
                      +.+.++..+.  +..++|||||++|+++          +.|+.|++||+.+++.+..+..+.       .....++|+|+
T Consensus        39 ~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          39 RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence            3445555443  4479999999988764          347899999999999887765433       22356899999


Q ss_pred             CCEEEEEeC--CCeEEEEECCCCCeeeEEEecCCC-------CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004885          609 LSRLATSSA--DRTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (725)
Q Consensus       609 ~~~Lasgs~--DgtIrvWDl~~~~~~l~~~~~h~~-------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~  679 (725)
                      ++++++++.  +..+.+||..++. .+..+..+..       ....+.+++++..+++....++.+.+++.......   
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~---  192 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE---  192 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT---
T ss_pred             CCeeEEecCCCCceeeeeecCCCc-EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce---
Confidence            999887754  6789999999877 5555543321       12334455555544444444444444444332211   


Q ss_pred             ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       680 ~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                       ....+..+.+.+++..++.++.++.+++|++.+++
T Consensus       193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         193 -DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             -TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             -ecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence             12335567788888999999999999999998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=1.9e-09  Score=116.98  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVW  624 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~-----H~~~V~~IafsPd~~~Lasgs~---------DgtIrvW  624 (725)
                      ..+.|.+++.++..  .|+.|.+||+.+++....+..     |...|.++.|+||+++|+.++.         ++.+.||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45889999987764  578899999999987765544     4578999999999999988753         5678999


Q ss_pred             ECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------CCCe
Q 004885          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGA  685 (725)
Q Consensus       625 Dl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-------------------~~~V  685 (725)
                      |+.++.  +..+..+...+..+.|+|+|..++.+  .++.+++|++.++..+.....                   .+..
T Consensus        98 d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          98 DLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             ETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             ECCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999875  56678888999999999999966543  367899999998876654321                   1234


Q ss_pred             EEEEEecCCCEEEEEEcCCe-EEEEE
Q 004885          686 TQMRFQPRLGRILAAAIENY-ISILD  710 (725)
Q Consensus       686 ~sv~fspdg~~Lla~s~Dg~-V~IwD  710 (725)
                      ..+.|+|||++|+....|.+ |..|+
T Consensus       174 ~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cccEECCCCCccceeEecCCcCceEE
Confidence            56889999999998876533 44443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.91  E-value=1e-08  Score=111.24  Aligned_cols=159  Identities=10%  Similarity=0.059  Sum_probs=115.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCE--EEEEeCCC---------
Q 004885          553 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSR--LATSSADR---------  619 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~--Lasgs~Dg---------  619 (725)
                      .|...+.+..++|||++|++.. .+..|.++|++++++..+++ .+...+..++|+|++++  ++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            4555677777789999886664 67899999999999887764 45778999999999884  44444332         


Q ss_pred             --------eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeC------------------------------
Q 004885          620 --------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------  661 (725)
Q Consensus       620 --------tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~------------------------------  661 (725)
                              .+..+|..+.. ....+... .....++|+|+|+++++++..                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~-v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMD-VAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCS-EEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccceEEeecCccce-eeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                    23557887766 33333322 457889999999988877643                              


Q ss_pred             ----------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          662 ----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       662 ----------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                                ++.+.|++......+..+........+.++|||+++++++. +++|.|||+++
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                      23455555555566677766666888999999999877655 89999999865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=2.5e-08  Score=107.98  Aligned_cols=117  Identities=17%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~---------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~Dgt  620 (725)
                      .+..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|||++|+... +..
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-ccc
Confidence            34566788999999999999998753         56788999998774 46788899999999999999998864 778


Q ss_pred             EEEEECCCCCeeeEEEec------------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 004885          621 VRVWDTENPDYSLRTFTG------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~------------------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwD  669 (725)
                      +.+|++.++. .......                  ..+....+.|+|||+.+++....+..|..|+
T Consensus       134 l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         134 IYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            9999998876 3332211                  1233466889999997665544444444443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.79  E-value=3.8e-07  Score=96.13  Aligned_cols=161  Identities=11%  Similarity=0.030  Sum_probs=107.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEE--EEe--ccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 004885          554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVK--STL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT  626 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~-Dg~V~IWdl~~-~~~i--~~l--~~H~~~V~~IafsPd~~~Lasgs-~DgtIrvWDl  626 (725)
                      ....+.++.|+|||+++++++. ..+|.+|++.. +...  ..+  .........++|+|+++++++.. .+++|.+|++
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3445899999999998888764 34788887654 2221  111  22346788999999999886655 5889999999


Q ss_pred             CCCCeee-EEEe-----------------cCCCCeEEEEEccCCCeEEEEEeCCCc-----EEEEECCCCeeEEEE----
Q 004885          627 ENPDYSL-RTFT-----------------GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVF----  679 (725)
Q Consensus       627 ~~~~~~l-~~~~-----------------~h~~~V~sl~fsP~g~~llaSgs~Dg~-----I~IwDl~t~~~v~~~----  679 (725)
                      ....... ....                 .+......+.++|+|++++++...+..     |..|++.....+...    
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            7654211 1111                 111235678999999988877654433     777877653222211    


Q ss_pred             e---cCCCeEEEEEec-CCCEEEEEEc-CCeEEEEECCCC
Q 004885          680 K---CQSGATQMRFQP-RLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       680 ~---~~~~V~sv~fsp-dg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      .   .......++|+| +|++|+++.. ++.|.||++...
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1   134577899998 7888888765 699999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.1e-06  Score=84.60  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=105.6

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE--EECCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCe--EEE
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGH-DKKAVL--WCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VRV  623 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg~V~I--Wdl~~~~~i~~l~~H~~~V~~IafsPd~~~La-sgs~Dgt--Irv  623 (725)
                      .+..+.+.+.+..|+|+|+.|+.... ++...+  +........ ....+........+++++..++ +...++.  |.+
T Consensus        77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~  155 (269)
T d2hqsa1          77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  155 (269)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEee
Confidence            44567788899999999998876654 333333  232323332 3333445555667777766554 4444554  555


Q ss_pred             EECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCCCeeEEEEecCCCeEEEEEecCCCEEEEEE
Q 004885          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (725)
Q Consensus       624 WDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~Iw--Dl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s  701 (725)
                      .++....  ......+........|+|++..++++...++...+|  |...+.. ..+.........+|+|||++|+..+
T Consensus       156 ~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         156 VNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             EETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             eeccccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEE
Confidence            5555543  445555667788899999999888777766655554  5444433 3334456678889999999988766


Q ss_pred             cC---CeEEEEECCCCeEE
Q 004885          702 IE---NYISILDVETQVCR  717 (725)
Q Consensus       702 ~D---g~V~IwDl~tg~~v  717 (725)
                      ..   ..|++|++..+...
T Consensus       233 ~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         233 SQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EETTEEEEEEEETTSCCEE
T ss_pred             cCCCCcEEEEEECCCCCEE
Confidence            53   46899999877654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=8e-08  Score=100.34  Aligned_cols=156  Identities=12%  Similarity=-0.075  Sum_probs=108.4

Q ss_pred             CCCCeEEEEEcCCCCEEE---EEeCCCc--EEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CC
Q 004885          554 STSKVESCHFSPDGKLLA---TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------AD  618 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~La---Sgs~Dg~--V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs----------~D  618 (725)
                      +.+....++..++++...   ++..++.  |.+||..+++.+.++..+...  .++|+||+++|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            445556666777888532   2344454  667799999999888876654  589999999888765          36


Q ss_pred             CeEEEEECCCCCeeeEEEecCCC-------CeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEe
Q 004885          619 RTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ  691 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~-------~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fs  691 (725)
                      ++|++||..+.+ ++..+..+..       ....++|+|||++++++...++.|.+||+.+++.+..+........ . .
T Consensus        96 ~~v~v~D~~t~~-~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~-~  172 (368)
T d1mdah_          96 DYVEVFDPVTFL-PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-H-P  172 (368)
T ss_dssp             EEEEEECTTTCC-EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-E-E
T ss_pred             CeEEEEECCCCc-EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-c-c
Confidence            789999999987 5665543322       2346899999998887766789999999999999988875332211 1 1


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCC
Q 004885          692 PRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                      .....+++.+.||.+.+|++...
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~  195 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSS
T ss_pred             CCCceEEEEcCCCCEEEEEecCC
Confidence            11234555566777777766544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.58  E-value=1.1e-06  Score=94.84  Aligned_cols=164  Identities=7%  Similarity=0.001  Sum_probs=111.1

Q ss_pred             eeEEEec-CCCCCeEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCeEEEEeccCCCCeEEEEE
Q 004885          546 TEFQLIP-ASTSKVESCHFSPDGK--LLATGGHDK-----------------KAVLWCTESFTVKSTLEEHTQWITDVRF  605 (725)
Q Consensus       546 ~~~~~l~-~H~~~V~~i~fSpdg~--~LaSgs~Dg-----------------~V~IWdl~~~~~i~~l~~H~~~V~~Iaf  605 (725)
                      +....++ .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+... ..+..++|
T Consensus       105 k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~  183 (441)
T d1qnia2         105 KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDA  183 (441)
T ss_dssp             EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEE
T ss_pred             cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEE
Confidence            3333333 4567799999999998  555555442                 2345788777777666543 45788999


Q ss_pred             cCCCCEEEEEeCC-----------------------------------------CeEEEEECCCCCeeeEEEecCCCCeE
Q 004885          606 SPSLSRLATSSAD-----------------------------------------RTVRVWDTENPDYSLRTFTGHSTTVM  644 (725)
Q Consensus       606 sPd~~~Lasgs~D-----------------------------------------gtIrvWDl~~~~~~l~~~~~h~~~V~  644 (725)
                      +|+++++++.+.+                                         +.+.|++..... .+..+.... ...
T Consensus       184 spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~-v~~~IPvgk-sPh  261 (441)
T d1qnia2         184 DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE-FTRYIPVPK-NPH  261 (441)
T ss_dssp             CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS-SEEEECCBS-SCC
T ss_pred             CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc-eEEEEeCCC-Ccc
Confidence            9999999887754                                         233344433333 344554443 357


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCCCe-----------eEE-EEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004885          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (725)
Q Consensus       645 sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~-----------~v~-~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~  712 (725)
                      .+.++|+|+++++++..+++|.|||+.+..           ++. .....-......|+++|..+.+...|..|..|++.
T Consensus       262 Gv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         262 GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            899999999999999999999999986421           111 11123446677899997666666679999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.55  E-value=3.1e-06  Score=86.13  Aligned_cols=195  Identities=16%  Similarity=0.113  Sum_probs=132.4

Q ss_pred             eeEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEecCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 004885          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (725)
Q Consensus       482 ~s~l~fs~dg~~~la~~s~~~~~~~~~lasGs~D~~V~vw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i  561 (725)
                      ...+++++||.               ++++...+++|..|.. +                +    ....+......+.++
T Consensus        30 ~e~iAv~pdG~---------------l~vt~~~~~~I~~i~p-~----------------g----~~~~~~~~~~~~~gl   73 (302)
T d2p4oa1          30 LENLASAPDGT---------------IFVTNHEVGEIVSITP-D----------------G----NQQIHATVEGKVSGL   73 (302)
T ss_dssp             EEEEEECTTSC---------------EEEEETTTTEEEEECT-T----------------C----CEEEEEECSSEEEEE
T ss_pred             cCCEEECCCCC---------------EEEEeCCCCEEEEEeC-C----------------C----CEEEEEcCCCCcceE
Confidence            34567777765               7777777887777731 1                1    011223445679999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC--CeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          562 HFSPDGKLLATGGHDKKAVLWCTES--FTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~V~IWdl~~--~~~i~~-l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      +|++||+++++...++.+.+|+...  +..... .......+..+++.++++++++.+.++.|..+|...+...+.....
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~  153 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP  153 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred             EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCC
Confidence            9999999999888888888887643  222211 1234567899999999998888888999999998876533322221


Q ss_pred             ---------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE---EEEecCCCeEEEEEecCCCEEEEEEcCCeE
Q 004885          639 ---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQPRLGRILAAAIENYI  706 (725)
Q Consensus       639 ---------h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v---~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V  706 (725)
                               ....+..+.++  +..++++....+.|+.+++......   ..+........++|+++|..+++...++.|
T Consensus       154 ~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         154 MLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             GGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcE
Confidence                     11234566654  4567888888899999998754322   222234567789999999877777778999


Q ss_pred             EEEECCCC
Q 004885          707 SILDVETQ  714 (725)
Q Consensus       707 ~IwDl~tg  714 (725)
                      ..|+....
T Consensus       232 ~~i~p~G~  239 (302)
T d2p4oa1         232 VRIAPDRS  239 (302)
T ss_dssp             EEECTTCC
T ss_pred             EEECCCCC
Confidence            99987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.53  E-value=1.5e-05  Score=81.83  Aligned_cols=166  Identities=8%  Similarity=0.035  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeC------CCe
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSA------DRT  620 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~--H~~~V~~IafsPd~~~Lasgs~------Dgt  620 (725)
                      ........++|++||+++++...+    +.|...+............  -...+.++++.++|++.++...      .+.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcce
Confidence            344567899999999987775432    2344555544444333322  1345788999999987666432      123


Q ss_pred             EEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeEEE----Ee----cCCCeEEEEEe
Q 004885          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGV----FK----CQSGATQMRFQ  691 (725)
Q Consensus       621 IrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v~~----~~----~~~~V~sv~fs  691 (725)
                      +..++.+...  +..+...-...+.|+|+|+++.++++-...+.|+.||+... .....    ..    .......|+++
T Consensus       159 v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD  236 (319)
T d2dg1a1         159 VYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  236 (319)
T ss_dssp             EEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             eEEEecccce--eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence            5555554433  33333333456889999999988888888899999998642 21111    11    12336789999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          692 PRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       692 pdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .+|..+++....+.|.+||- .|+.+.++.
T Consensus       237 ~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         237 SDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            99988888788899999995 688887774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.48  E-value=1.1e-05  Score=81.08  Aligned_cols=156  Identities=11%  Similarity=0.197  Sum_probs=117.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~  631 (725)
                      ......++++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.+++..+++....+.|.+||... . 
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~-  188 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-  188 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-c-
Confidence            44557889999999988888777888888854 5555554  34567788999999998888888889999999864 3 


Q ss_pred             eeEEEe--cCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEcCCe
Q 004885          632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY  705 (725)
Q Consensus       632 ~l~~~~--~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~Dg~  705 (725)
                      .+..+.  +.......|+++++|+ ++++-. .++.|.+|+. +|+.+..+..   ......|++.++| .|+++..++.
T Consensus       189 ~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG-~l~V~~~n~~  265 (279)
T d1q7fa_         189 YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVLASKDYR  265 (279)
T ss_dssp             EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEEEETTTE
T ss_pred             eeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC-cEEEEeCCCe
Confidence            355553  3445678999999998 665543 3557999984 5888877754   2358899999996 4666778899


Q ss_pred             EEEEECCCCe
Q 004885          706 ISILDVETQV  715 (725)
Q Consensus       706 V~IwDl~tg~  715 (725)
                      |++|......
T Consensus       266 v~~fr~~~~~  275 (279)
T d1q7fa_         266 LYIYRYVQLA  275 (279)
T ss_dssp             EEEEECSCCC
T ss_pred             EEEEEeeeec
Confidence            9999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=5.3e-06  Score=82.53  Aligned_cols=153  Identities=10%  Similarity=0.016  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ....+|++.++++++++-..+..+.+++............-.....+|+++++++.+++...++.|..+|.+... ....
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~~  176 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVL  176 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEEC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce-eeee
Confidence            457899999999988776667778777765543322222223456789999999988888888899999988654 2222


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004885          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDV  711 (725)
Q Consensus       636 ~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl  711 (725)
                      ..........|+++++|. ++++....+.|..++...... ..+..  -.....|+++++|..+++-..++.|+.++.
T Consensus       177 ~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         177 PFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            224446678999999986 777777788888888765432 22222  245789999999876655455677776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.38  E-value=1.3e-05  Score=83.96  Aligned_cols=160  Identities=9%  Similarity=-0.023  Sum_probs=101.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEe-ccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC
Q 004885          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTEN  628 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-~~~i~~l-~~H~~~V~~IafsPd~~~Lasgs---~DgtIrvWDl~~  628 (725)
                      ....+..|+|++++++|+++.. +.+..|.+.. +...... .........++++++++.++...   ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455778999999999988765 5677777654 2222211 11233456777888887543322   234555544332


Q ss_pred             CCeeeE----------------EEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC-eeE--EEEe---cCCCeE
Q 004885          629 PDYSLR----------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCA--GVFK---CQSGAT  686 (725)
Q Consensus       629 ~~~~l~----------------~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~-~~v--~~~~---~~~~V~  686 (725)
                      ......                ........+.++.|+|+|++++++......|++|++... ...  ..+.   ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            110110                111223457899999999988877666678999887543 222  1222   246789


Q ss_pred             EEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885          687 QMRFQPRLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       687 sv~fspdg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      .++|+|+++++++... ++.|.+||+..+
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            9999999998877776 789999998765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=6.4e-05  Score=73.44  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg---~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~-DgtIrvWDl~~  628 (725)
                      .+...+...+|||||+.||....+.   .+.+.+...+... .+..+...+....|+|+++.++.... ++...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            3456688999999999998765443   4666676665544 44556788899999999998877654 33333333322


Q ss_pred             CCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCC--
Q 004885          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--  704 (725)
Q Consensus       629 ~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg--  704 (725)
                      ...................+++++..++++...++.  |.++++..+................|+|++..++..+.++  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence            221234444445556677788888877777766664  5566666654443333355577889999999988887653  


Q ss_pred             -eEEEEECCCCeE
Q 004885          705 -YISILDVETQVC  716 (725)
Q Consensus       705 -~V~IwDl~tg~~  716 (725)
                       .|.++|..++.+
T Consensus       195 ~~i~~~~~~~~~~  207 (269)
T d2hqsa1         195 QHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEEETTTCCE
T ss_pred             eeeeEeecccccc
Confidence             466667666544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.31  E-value=4.2e-05  Score=77.43  Aligned_cols=163  Identities=12%  Similarity=0.092  Sum_probs=114.6

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       546 ~~~~~l~~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      +.+..+.... .+..++++|||+++++...+++|+.||....  ...+......+.+++|+++++++++...++.+.+|+
T Consensus        19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            4445554333 5889999999999999999999988886543  334445667899999999999988888888888888


Q ss_pred             CCCCCeeeEEEe--cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----------CCCeEEEEEec
Q 004885          626 TENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQP  692 (725)
Q Consensus       626 l~~~~~~l~~~~--~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-----------~~~V~sv~fsp  692 (725)
                      ..........+.  ........+++.+++. ++++.+.++.|..+|...+........           ...+..+.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             ecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            765443333332  3445688999999986 677777788999999887754433321           12345666654


Q ss_pred             CCCEEEEE-EcCCeEEEEECCCC
Q 004885          693 RLGRILAA-AIENYISILDVETQ  714 (725)
Q Consensus       693 dg~~Lla~-s~Dg~V~IwDl~tg  714 (725)
                        .+++.+ +..+.|..+++...
T Consensus       175 --~~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         175 --NFLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             --TEEEEEETTTTEEEEEEBCTT
T ss_pred             --CceeeecCCCCeEEecccccc
Confidence              444444 45788888887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=2.5e-05  Score=77.43  Aligned_cols=154  Identities=6%  Similarity=-0.001  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEe
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~  637 (725)
                      ...++++++++++++....+.|++++..+...+.... ......+|+++++++++++-..+..+.+++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            5678999999988777766677766655544443332 235678999999998877766677788887765442222222


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 004885          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (725)
Q Consensus       638 ~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~-~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg  714 (725)
                       -......+++++++. ++++...++.|..+|.......... ..-.....|+++++|..+++....+.|..++....
T Consensus       138 -~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         138 -GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             -SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             -ccCCcceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence             224467899999987 6767777888999998754433222 22455788999999776666556778888876544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.25  E-value=7.8e-05  Score=76.36  Aligned_cols=158  Identities=10%  Similarity=0.094  Sum_probs=107.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCC
Q 004885          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTEN  628 (725)
Q Consensus       553 ~H~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D----gtIrvWDl~~  628 (725)
                      .....+..++|.++|+++++-..++.|+.|+.++......+.........|+|+++++++++...+    +.|...+...
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            344456799999999988887788999999988877666665666778999999999877765432    2344445544


Q ss_pred             CCeeeEEEecC---CCCeEEEEEccCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEE
Q 004885          629 PDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       629 ~~~~l~~~~~h---~~~V~sl~fsP~g~~llaSgs~------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla  699 (725)
                      ..  +..+..+   ......+++.++|+ ++++...      .+.|..++...+........-...+.|+|+|+++.|++
T Consensus       117 ~~--~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         117 DN--LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             CS--CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             ce--eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence            43  3333222   23478899999998 5555432      22366666554443333333355788999999987766


Q ss_pred             EEc-CCeEEEEECCC
Q 004885          700 AAI-ENYISILDVET  713 (725)
Q Consensus       700 ~s~-Dg~V~IwDl~t  713 (725)
                      +.. .+.|..||+..
T Consensus       194 ad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         194 TETTANRLHRIALED  208 (319)
T ss_dssp             EEGGGTEEEEEEECT
T ss_pred             ecccCCceEEEEEcC
Confidence            654 78999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.13  E-value=0.0002  Score=73.11  Aligned_cols=152  Identities=16%  Similarity=0.264  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCC----EEE-EEeC
Q 004885          558 VESCHFSPDGKLLATGGH---------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS----RLA-TSSA  617 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~---------------Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~----~La-sgs~  617 (725)
                      .++++|.++|++.++-..               +|.|+.++.+ ++..... ..-..-+.|+|+|+++    +|+ +-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeec
Confidence            578999999998776432               2345444433 3333222 2333457899988754    444 4456


Q ss_pred             CCeEEEEECCCCCeee--EEEe---c-CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEE
Q 004885          618 DRTVRVWDTENPDYSL--RTFT---G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF  690 (725)
Q Consensus       618 DgtIrvWDl~~~~~~l--~~~~---~-h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~f  690 (725)
                      .+.|..||+.......  ..+.   + .......++++.+|+ ++++....+.|.+||.+.+..+..+.. ...+++|+|
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            7889999887554211  1111   1 123356799999988 666776788999999998887777765 467899999


Q ss_pred             ecCCCEEEEEE-cCCeEEEEECC
Q 004885          691 QPRLGRILAAA-IENYISILDVE  712 (725)
Q Consensus       691 spdg~~Lla~s-~Dg~V~IwDl~  712 (725)
                      .|+++.|+++. .++.|..+++.
T Consensus       276 g~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         276 KPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECS
T ss_pred             eCCCCEEEEEECCCCcEEEEECC
Confidence            99988665554 56889888874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.11  E-value=0.00023  Score=72.61  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC----CCeEEEEEcCCCCEEEEEeC---------------C
Q 004885          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSSA---------------D  618 (725)
Q Consensus       558 V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~----~~V~~IafsPd~~~Lasgs~---------------D  618 (725)
                      -..++|.++++.|+++.....|.+++.+............    ...+++++++++.+.+|-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            5679999999988888877788899977654332111111    13678999999988777432               2


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCC----eEEEEEeCCCcEEEEECCCCeeEE------EEec--CCCeE
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCAG------VFKC--QSGAT  686 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~----~llaSgs~Dg~I~IwDl~t~~~v~------~~~~--~~~V~  686 (725)
                      +.|..++.+. .  ...+.......+.++|+|+++    .++++-...+.|+.||+.....+.      .+..  ....-
T Consensus       153 G~v~~~~~dg-~--~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         153 GSIYCFTTDG-Q--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             EEEEEECTTS-C--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             ceEEEEeecC-c--eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            3344444332 2  222222334457899998865    466666778889999876432222      1111  12356


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       687 sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|++..+|..+++....+.|.+||.++++.+..+.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~  264 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE
Confidence            89999998887777778999999998887666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.11  E-value=0.0003  Score=70.13  Aligned_cols=157  Identities=9%  Similarity=0.073  Sum_probs=108.6

Q ss_pred             EEEEEcCCC-CEEEEE-eCCCcEEEEECCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 004885          559 ESCHFSPDG-KLLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (725)
Q Consensus       559 ~~i~fSpdg-~~LaSg-s~Dg~V~IWdl~~~~~i~~l~-~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~  635 (725)
                      ..+++..+. .++++. +.++.|.+++.. +.....+. ........+++.+++.++++....+.+.+++... . .+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~-~~~~  149 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHK  149 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEE
T ss_pred             ccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-c-eeec
Confidence            445555543 344433 345577777754 55555553 3456678999999999888887788888888754 3 3454


Q ss_pred             E--ecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          636 F--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       636 ~--~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~---~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                      +  ..+......+++.+++. ++++....+.|++||.. ++.+..+..   ......|+++++|..+++-.. ++.|.+|
T Consensus       150 ~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         150 FGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             EECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             ccccccccccceeeecccee-EEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence            4  33456788899999876 77777788899999976 667777643   334789999999886655443 4579999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      +. +|+.+.++.
T Consensus       228 ~~-~G~~~~~~~  238 (279)
T d1q7fa_         228 TQ-DGQLISALE  238 (279)
T ss_dssp             CT-TSCEEEEEE
T ss_pred             CC-CCCEEEEEe
Confidence            84 588777764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.7e-05  Score=79.96  Aligned_cols=164  Identities=13%  Similarity=0.051  Sum_probs=102.6

Q ss_pred             CeEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs---------~Dg~V~IWdl~~~~~i~~l--~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      .+....||||+++|+...         ..+.+.|+|+.++......  ......+....|+|||+.||-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999887763         3567889999887654322  22334566788999999887765 66788888


Q ss_pred             CCCCCeeeEEEecCCCC-----------------eEEEEEccCCCeEEEEEeCCCcEEEEE-------------------
Q 004885          626 TENPDYSLRTFTGHSTT-----------------VMSLDFHPSKEDLLCSCDNNSEIRYWS-------------------  669 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~-----------------V~sl~fsP~g~~llaSgs~Dg~I~IwD-------------------  669 (725)
                      ...+.....+..+..+.                 -..+.|+|||++|++.--++..|..|.                   
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            87665222222222221                 257789999998776654445444443                   


Q ss_pred             --------------CCCCeeEEEEec-------CCCeEEEEEecCCCEEEEEEc-C---CeEEEEECCCCeEEEEEe
Q 004885          670 --------------INNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI-E---NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       670 --------------l~t~~~v~~~~~-------~~~V~sv~fspdg~~Lla~s~-D---g~V~IwDl~tg~~v~~l~  721 (725)
                                    +.++........       ..-+..+.|.+++..++.... +   ..|.++|+.+|++...+.
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                          332221111110       011567889999765554433 2   368899999998776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.92  E-value=0.0019  Score=64.86  Aligned_cols=162  Identities=12%  Similarity=0.005  Sum_probs=111.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEC
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA----DRTVRVWDT  626 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~----H~~~V~~IafsPd~~~Lasgs~----DgtIrvWDl  626 (725)
                      ...+.++++.+++.+++++ .+ -|.++|..+++.......    ....++++.+.|+|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            3468899999888777654 44 588999988775443321    1235889999999998776543    234566766


Q ss_pred             CCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCC------eeEEEEe--c-CCCeEEEEEecCCCEE
Q 004885          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFK--C-QSGATQMRFQPRLGRI  697 (725)
Q Consensus       627 ~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~------~~v~~~~--~-~~~V~sv~fspdg~~L  697 (725)
                      ..+. ....+. .......++|+++++.++++-+..+.|..|++...      +....+.  . ......++++.+|...
T Consensus       136 ~~g~-~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         136 AKGK-VTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             ETTE-EEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             cCCc-EEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            6654 233333 33456889999999988888888889999987531      1111121  1 3457889999998877


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEe
Q 004885          698 LAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       698 la~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      ++.-..+.|.+||- .|+.+..+.
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~  236 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYE  236 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEec
Confidence            77767889999995 577776664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.77  E-value=0.00093  Score=64.78  Aligned_cols=165  Identities=14%  Similarity=0.136  Sum_probs=93.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEec------cCCCCeEEEEEcCCCCEEEEEeC
Q 004885          550 LIPASTSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSA  617 (725)
Q Consensus       550 ~l~~H~~~V~~i~fSpdg~~LaSgs~-Dg-----~V~IWdl~~~~~i~~l~------~H~~~V~~IafsPd~~~Lasgs~  617 (725)
                      .|..+.+.+...+|||||+.||.... ++     .|.+++..+++......      ........+.|+|+++.|+....
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            34556677899999999998886542 22     37777877776553321      11234567889999998876533


Q ss_pred             C------CeEEEEECCCCCe------------------e------------------------------eEEEecCCCCe
Q 004885          618 D------RTVRVWDTENPDY------------------S------------------------------LRTFTGHSTTV  643 (725)
Q Consensus       618 D------gtIrvWDl~~~~~------------------~------------------------------l~~~~~h~~~V  643 (725)
                      .      ..+.+.+......                  .                              ......+....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (281)
T d1k32a2         115 MQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV  194 (281)
T ss_dssp             TSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred             cCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCcccc
Confidence            1      1233333322110                  0                              00011111222


Q ss_pred             EEEEEccCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004885          644 MSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (725)
Q Consensus       644 ~sl~fsP~g~~llaSgs~D--g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~  718 (725)
                      ....+.++  .++.....+  ..|.++|+.++.... +..........|+|||+.|+.. .++.|+++|+.+++...
T Consensus       195 ~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         195 SSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             ceeeeecc--ccceecccccccceEEEeCCCCceEE-eecCCCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            33334433  233333333  347777887665443 2222333345689999987764 46889999999886543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=0.016  Score=57.01  Aligned_cols=164  Identities=7%  Similarity=-0.037  Sum_probs=112.5

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCC
Q 004885          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPD  630 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~La-Sgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~D-gt--IrvWDl~~~~  630 (725)
                      ...+.++++..-+..|+ +-...+.|.+.+++...+...+......+..++++|...+|+....+ +.  |..-+++...
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            35688999977555555 44556799999998665444444444678999999977777655432 23  4444565443


Q ss_pred             eeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 004885          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISIL  709 (725)
Q Consensus       631 ~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~Iw  709 (725)
                       ........-.....|++++.++.++++-...+.|...|+....+...+.......+|++.  +++|+.+.. .+.|...
T Consensus       158 -~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             -ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence             233333333567899999988877777667789999999866655555544456788886  456766654 6899999


Q ss_pred             ECCCCeEEEEEe
Q 004885          710 DVETQVCRLKLQ  721 (725)
Q Consensus       710 Dl~tg~~v~~l~  721 (725)
                      |..+++.+..+.
T Consensus       235 ~~~~g~~~~~~~  246 (263)
T d1npea_         235 DLAISKEMDTFH  246 (263)
T ss_dssp             ETTTTEEEEEEC
T ss_pred             ECCCCccceEEC
Confidence            999998887764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.56  E-value=0.017  Score=57.60  Aligned_cols=143  Identities=10%  Similarity=0.086  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCe
Q 004885          557 KVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDY  631 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~D----g~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~  631 (725)
                      .++++.+.|+|++.++...+    +.-.+|.+..++....+.. -...+.++|+++++.++.+ +..+.|..|+++....
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            47889999999977765432    3456677666765555543 3456789999998866554 5577899888753221


Q ss_pred             -------eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEEe-cCCCEEEEEEc
Q 004885          632 -------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ-PRLGRILAAAI  702 (725)
Q Consensus       632 -------~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fs-pdg~~Lla~s~  702 (725)
                             ....+.+..+....++++.+|. ++++.-..+.|.+||. .++.+..+.. ...+++++|- ++...|++++.
T Consensus       183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                   1122223445678899999987 6656656788999995 5888888876 4569999996 67676666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0032  Score=67.53  Aligned_cols=167  Identities=7%  Similarity=0.075  Sum_probs=102.5

Q ss_pred             CeEEEEEcCCCCEEEEEe-CC---CcEEEEECCCCeEEEEeccCC-CCe----EEEEEcCCCCEEE---EEeCCC--eEE
Q 004885          557 KVESCHFSPDGKLLATGG-HD---KKAVLWCTESFTVKSTLEEHT-QWI----TDVRFSPSLSRLA---TSSADR--TVR  622 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs-~D---g~V~IWdl~~~~~i~~l~~H~-~~V----~~IafsPd~~~La---sgs~Dg--tIr  622 (725)
                      .+..+.|++++++++... .+   ..|.++|..++++...+..+. ..|    ....|.|+++.++   ....+|  .+.
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence            467899999988666543 22   268889999988776654432 222    3457889887432   222233  333


Q ss_pred             EEECC-----CCCeeeEEEecCCCCeEEE-EEccCCCeEEEEEeCCC--c--EEEEECCCCeeEEEEe----cCCCeEEE
Q 004885          623 VWDTE-----NPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNS--E--IRYWSINNGSCAGVFK----CQSGATQM  688 (725)
Q Consensus       623 vWDl~-----~~~~~l~~~~~h~~~V~sl-~fsP~g~~llaSgs~Dg--~--I~IwDl~t~~~v~~~~----~~~~V~sv  688 (725)
                      ..++.     .....++.++...-.|..+ .|+.+++.+++++..++  .  |+-.++..+.....+.    ......++
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence            33321     1111233333334456665 68999888888876543  2  4444444333222222    24567899


Q ss_pred             EEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCC
Q 004885          689 RFQPRLGRILAAAIE---NYISILDVETQVCRLKLQVS  723 (725)
Q Consensus       689 ~fspdg~~Lla~s~D---g~V~IwDl~tg~~v~~l~GH  723 (725)
                      .|+|++.+++..+..   -.+.|++..+++.+..|+..
T Consensus       416 ~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             EECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred             EECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcCC
Confidence            999999998876653   56899999999999998753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.013  Score=57.61  Aligned_cols=166  Identities=8%  Similarity=-0.050  Sum_probs=112.9

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCee
Q 004885          555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYS  632 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSg-s~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~~~~~~  632 (725)
                      ...|.+++|.+..+.|+-+ ..++.|+..+++.......+......+.+|+++.-+..|+.+ ...+.|.+.+++... +
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~  113 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-R  113 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce-E
Confidence            3447889998877766655 456789988987765555554444678999998766666554 457799999998765 3


Q ss_pred             eEEEecCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEE-cCCeEEE
Q 004885          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IENYISI  708 (725)
Q Consensus       633 l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~--I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s-~Dg~V~I  708 (725)
                      ...+.........++++|....++.+-...+.  |.-.++........... -.....+++++.++.|+.+. ..+.|..
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            33333344678999999998877766543333  55556664443333322 34578999998888887775 4688999


Q ss_pred             EECCCCeEEEEEe
Q 004885          709 LDVETQVCRLKLQ  721 (725)
Q Consensus       709 wDl~tg~~v~~l~  721 (725)
                      .|+....+...+.
T Consensus       194 ~~~~g~~~~~v~~  206 (263)
T d1npea_         194 LNPAQPGRRKVLE  206 (263)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             EECCCCCeEEEEC
Confidence            9997665444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.067  Score=52.30  Aligned_cols=165  Identities=8%  Similarity=-0.050  Sum_probs=112.6

Q ss_pred             CCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCe
Q 004885          555 TSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY  631 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaS-gs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~--DgtIrvWDl~~~~~  631 (725)
                      ...+.++++.+.+..|.. -...++|.+++++.......+.........++++|...+|+....  .+.|...+++... 
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-  154 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-  154 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-
Confidence            355778888775555544 455678999999877665556555677899999997666665543  3456666776544 


Q ss_pred             eeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeEEEEEecCCCEEEEEE-cCCeEE
Q 004885          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAA-IENYIS  707 (725)
Q Consensus       632 ~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~---~~V~sv~fspdg~~Lla~s-~Dg~V~  707 (725)
                      ........-.....+++++.++.++.+-...+.|...|+....+...+...   .....|++..  .+|+.+. .++.|.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~  232 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF  232 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEE
Confidence            233333334567899999988878777667789999999865554444432   3466777773  5666665 468899


Q ss_pred             EEECCCCeEEEEEeC
Q 004885          708 ILDVETQVCRLKLQV  722 (725)
Q Consensus       708 IwDl~tg~~v~~l~G  722 (725)
                      ..+..++..+..+..
T Consensus       233 ~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         233 SANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEETTTCCCCEEEEC
T ss_pred             EEECCCCcceEEEEc
Confidence            999888866555543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.17  E-value=0.0081  Score=63.06  Aligned_cols=152  Identities=12%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             EEEEcC---CCCEEEEEe-CCCcEEEEECCCCeEEEEecc-CCCCeEEEEEcC--CCCEEEEEeCC--------------
Q 004885          560 SCHFSP---DGKLLATGG-HDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSP--SLSRLATSSAD--------------  618 (725)
Q Consensus       560 ~i~fSp---dg~~LaSgs-~Dg~V~IWdl~~~~~i~~l~~-H~~~V~~IafsP--d~~~Lasgs~D--------------  618 (725)
                      .+.|..   ||++|++.. .+..|-+.|+++.++..+++- ....+..++..+  +-.|++..+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   788887765 578999999999988665432 345667777654  56677776653              


Q ss_pred             ----CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC--------------------------------
Q 004885          619 ----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------------------------  662 (725)
Q Consensus       619 ----gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D--------------------------------  662 (725)
                          +.+.++|..+.+.......  .+....++++++|++++++|-+.                                
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                2366788887763222222  23466799999999888777321                                


Q ss_pred             -----CcEEEEECCCC---eeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004885          663 -----SEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET  713 (725)
Q Consensus       663 -----g~I~IwDl~t~---~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~t  713 (725)
                           +.+.+.|.+..   ..+..+........|.++|||+++++++. +.+|.|+|+++
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                 22445554431   23333444556778899999999988877 89999999863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.11  Score=50.63  Aligned_cols=163  Identities=12%  Similarity=0.012  Sum_probs=108.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 004885          554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  627 (725)
Q Consensus       554 H~~~V~~i~fSpdg~~LaSgs-~Dg~V~IWdl~~~~----~i~~l~~H~~~V~~IafsPd~~~Lasg-s~DgtIrvWDl~  627 (725)
                      ....+..+.|.+..+.|+-.. .++.|+..+++...    ....+......+.+|++.+-+..|+.+ ...++|.+.+++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            345578999998777766554 45667766665321    122233334567789998866666555 456789999998


Q ss_pred             CCCeeeEEEecCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeEEEEEecCCCEEEEEEc-CC
Q 004885          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN  704 (725)
Q Consensus       628 ~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs-~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg~~Lla~s~-Dg  704 (725)
                      ... ....+.........++++|....++++.. ..+.|.-.++........... -..+..+++++.++.|+.+.. .+
T Consensus       108 g~~-~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         108 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             SSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             Cce-EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            765 44445555567899999998776776643 345677778775544443332 355789999998888887755 68


Q ss_pred             eEEEEECCCCeEE
Q 004885          705 YISILDVETQVCR  717 (725)
Q Consensus       705 ~V~IwDl~tg~~v  717 (725)
                      .|...|+....+.
T Consensus       187 ~I~~~~~dG~~~~  199 (266)
T d1ijqa1         187 SISSIDVNGGNRK  199 (266)
T ss_dssp             EEEEEETTSCSCE
T ss_pred             EEEEEECCCCCEE
Confidence            8999998765433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.95  E-value=0.013  Score=61.53  Aligned_cols=157  Identities=9%  Similarity=0.082  Sum_probs=101.7

Q ss_pred             CCCCeEEEEEcC--CCCEEEEEeCCC------------------cEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q 004885          554 STSKVESCHFSP--DGKLLATGGHDK------------------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  613 (725)
Q Consensus       554 H~~~V~~i~fSp--dg~~LaSgs~Dg------------------~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~La  613 (725)
                      ....+..++..+  +..++++++.+.                  .+.++|.++.+....+.- ......++++++|++++
T Consensus       130 n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af  208 (459)
T d1fwxa2         130 NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAF  208 (459)
T ss_dssp             SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEE
T ss_pred             CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEE
Confidence            344566666654  445787776633                  356788888887766553 34567899999999998


Q ss_pred             EEeCCC--------------------------------------eEEEEECCCC-CeeeEEEecCCCCeEEEEEccCCCe
Q 004885          614 TSSADR--------------------------------------TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKED  654 (725)
Q Consensus       614 sgs~Dg--------------------------------------tIrvWDl~~~-~~~l~~~~~h~~~V~sl~fsP~g~~  654 (725)
                      +.+.+.                                      .+.+-|.+.. ...+..+..-......|.++|||++
T Consensus       209 ~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKy  288 (459)
T d1fwxa2         209 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKH  288 (459)
T ss_dssp             EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSE
T ss_pred             EEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCE
Confidence            877541                                      2234444321 0011112222234577899999999


Q ss_pred             EEEEEeCCCcEEEEECCCC------------eeEEEEecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECC
Q 004885          655 LLCSCDNNSEIRYWSINNG------------SCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVE  712 (725)
Q Consensus       655 llaSgs~Dg~I~IwDl~t~------------~~v~~~~~~~~V~sv~fspdg~~Lla~-s~Dg~V~IwDl~  712 (725)
                      +++++.-+.+|.|+|++.-            ..+...+..-+....+|+..| ..+++ --|..|.-|++.
T Consensus       289 i~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         289 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             EEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecc
Confidence            9999989999999999631            122222335567788899886 44443 359999999984

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.81  E-value=0.007  Score=58.21  Aligned_cols=111  Identities=11%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEECCCCeeE
Q 004885          604 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  676 (725)
Q Consensus       604 afsPd--~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg-----~I~IwDl~t~~~v  676 (725)
                      .++|+  |+.++-.+ ++.|.+.|+..+.  .+.+..+.+.+...+|+|||+.++++...++     .|.++++.++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35677  88877554 4568888998776  4566667778899999999998877665443     3788888887665


Q ss_pred             EEEec-------CCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCCeEE
Q 004885          677 GVFKC-------QSGATQMRFQPRLGRILAAAIE------NYISILDVETQVCR  717 (725)
Q Consensus       677 ~~~~~-------~~~V~sv~fspdg~~Lla~s~D------g~V~IwDl~tg~~v  717 (725)
                      .....       ......+.|+|+|+.|+.....      ..+.+++...+...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence            43221       1235678899999988876442      34566666655443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=0.13  Score=51.07  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEEec
Q 004885          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (725)
Q Consensus       559 ~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~~~  638 (725)
                      .+.-.+|..+.||.-+ ..++.|||+++...++.+.- ...|.--.|-.+. .|+..+ +..|.-|+++....+...|..
T Consensus        66 dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          66 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhh
Confidence            3556688888888766 56899999999988877764 4567777787554 443332 667999999765556777765


Q ss_pred             CC----CCeEEEEEccCCCeEEEEEe------CCCcEEEEECCCCe----------------------------------
Q 004885          639 HS----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGS----------------------------------  674 (725)
Q Consensus       639 h~----~~V~sl~fsP~g~~llaSgs------~Dg~I~IwDl~t~~----------------------------------  674 (725)
                      |.    ..|..-..+++.++++++|=      -.|.+-+|..+.+.                                  
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            54    34666666777776655541      12345555554220                                  


Q ss_pred             --eEEEEec------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004885          675 --CAGVFKC------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (725)
Q Consensus       675 --~v~~~~~------------------------~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l  720 (725)
                        .++.++.                        .+-..++.+++..+.++..+.-|.|++||++|+.|+..=
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence              1111110                        112355667777788888899999999999999988753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.89  E-value=0.073  Score=57.94  Aligned_cols=145  Identities=8%  Similarity=-0.006  Sum_probs=91.4

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCeE---------EEEEcCCC---CEEEEEeCCCeEEEEECCCCCeeeEEEecCCCC--
Q 004885          577 KKAVLWCTESFTVKSTLEEHTQWIT---------DVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--  642 (725)
Q Consensus       577 g~V~IWdl~~~~~i~~l~~H~~~V~---------~IafsPd~---~~Lasgs~DgtIrvWDl~~~~~~l~~~~~h~~~--  642 (725)
                      ..|.-.|+++++.+..+......+.         -+.+..++   ..++.+..+|.+.++|..+++.....-......  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            3566678888888776643222221         12222233   356678889999999999887322211111000  


Q ss_pred             ---------------------------------eEEEEEccCCCeEEEEEeC----------------------------
Q 004885          643 ---------------------------------VMSLDFHPSKEDLLCSCDN----------------------------  661 (725)
Q Consensus       643 ---------------------------------V~sl~fsP~g~~llaSgs~----------------------------  661 (725)
                                                       -...+++|+...+++....                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             0134567776644433211                            


Q ss_pred             -------CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          662 -------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       662 -------Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                             .|.|.-||+.+++.+..+.......+-.+.-.++.+++++.|+.++.||.+||+.+-+++
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                   246888999999999888765444333344556888889999999999999999998775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.82  E-value=0.17  Score=55.01  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=44.5

Q ss_pred             CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |.|.-+|+.+++.+..+.......+=.+...++.+++++.|+.++.||.++|+.+-+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            46888899999988887754333222233346788889999999999999999997764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.67  E-value=0.071  Score=53.77  Aligned_cols=158  Identities=7%  Similarity=0.022  Sum_probs=93.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeE--EEE-eccCCCCeEEEEEcCCCCEEEEEeCC-CeE
Q 004885          557 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KST-LEEHTQWITDVRFSPSLSRLATSSAD-RTV  621 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg-----------~V~IWdl~~~~~--i~~-l~~H~~~V~~IafsPd~~~Lasgs~D-gtI  621 (725)
                      .+...+...+|++++.|+.+.           .+.+||..+++-  +.. ...|...+...++.+++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344444556889888887531           377999987542  222 23344445667889999999988765 589


Q ss_pred             EEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCCCeeEEEEec---------C----
Q 004885          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKC---------Q----  682 (725)
Q Consensus       622 rvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~D------g~I~IwDl~t~~~v~~~~~---------~----  682 (725)
                      .+||..+..............-.+++..++|. +++.++.+      ..+.+||..+.+....-..         .    
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999876521111111122234567778887 55555432      3589999998765432110         0    


Q ss_pred             --CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 004885          683 --SGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (725)
Q Consensus       683 --~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~  715 (725)
                        .....+...++|..++.++.++.+.++|..+..
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence              011112334556666666667777777777664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.54  E-value=0.11  Score=56.51  Aligned_cols=58  Identities=7%  Similarity=-0.032  Sum_probs=44.9

Q ss_pred             cEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       664 ~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|.-||+.+++.+..++...+...=...-.++.|++++.|+.++.||.+||+.+-+++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            5777899999998888764433322234467889899999999999999999997765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.50  E-value=0.62  Score=46.93  Aligned_cols=157  Identities=13%  Similarity=0.068  Sum_probs=95.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeEE-EE--eccC-----CCCeEEEEE--cCCCC-EEE
Q 004885          557 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-ST--LEEH-----TQWITDVRF--SPSLS-RLA  613 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~------------Dg~V~IWdl~~~~~i-~~--l~~H-----~~~V~~Iaf--sPd~~-~La  613 (725)
                      ..-+|+..|+|..+++++.            .|.|.++|+.+.+.. ..  +.+.     ......|.+  .+++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3457888888887766542            388999998764321 11  1111     112344444  44555 456


Q ss_pred             EEe---CCCeEEEEECCCCCeeeEEE---e-cCCCCeEEEEEccCCCeEEEEEeC---------------CCcEEEEECC
Q 004885          614 TSS---ADRTVRVWDTENPDYSLRTF---T-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSIN  671 (725)
Q Consensus       614 sgs---~DgtIrvWDl~~~~~~l~~~---~-~h~~~V~sl~fsP~g~~llaSgs~---------------Dg~I~IwDl~  671 (725)
                      +..   ...+|.+|++......+...   . .......+|++..++. +++|-+.               -+...+|..+
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            654   35688999886554222222   1 1224578999998876 6666321               1234455555


Q ss_pred             CCeeEEEEecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 004885          672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ  714 (725)
Q Consensus       672 t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~-Dg~V~IwDl~tg  714 (725)
                      .+.+......-...+.|+++||+++|+++.. .+.|++|++...
T Consensus       195 ~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         195 PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            5555444444567899999999998877765 688999998744

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.18  E-value=0.23  Score=50.55  Aligned_cols=144  Identities=16%  Similarity=0.216  Sum_probs=94.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcC----C--CCEEEEEe-CC---CeEEEEECCCCCeeeEE
Q 004885          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----S--LSRLATSS-AD---RTVRVWDTENPDYSLRT  635 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsP----d--~~~Lasgs-~D---gtIrvWDl~~~~~~l~~  635 (725)
                      +..+|+....++-|++||+. ++.+..+.  .+.++.|..-.    +  ..-|++++ .+   -+|.+|.+......+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45577776666679999985 77776664  45667666542    2  22244444 22   36888888643323443


Q ss_pred             EecC-------CCCeEEEEE--ccC-CCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeEEEEEecCCCEEE
Q 004885          636 FTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL  698 (725)
Q Consensus       636 ~~~h-------~~~V~sl~f--sP~-g~~llaSgs~Dg~I~IwDl~---t~----~~v~~~~~~~~V~sv~fspdg~~Ll  698 (725)
                      +...       ...+..+|+  ++. +..+++....+|.+..|.+.   ++    +.++.|.....+..|.++...+.|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            3321       124667776  665 44455566778888888763   33    4566777778899999999999999


Q ss_pred             EEEcCCeEEEEECC
Q 004885          699 AAAIENYISILDVE  712 (725)
Q Consensus       699 a~s~Dg~V~IwDl~  712 (725)
                      ++-.+..|+.++++
T Consensus       196 isEE~~Giw~~~a~  209 (353)
T d1h6la_         196 IAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEETTTEEEEEESS
T ss_pred             EecCccceEEEEec
Confidence            99888777777764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.17  E-value=0.14  Score=55.59  Aligned_cols=49  Identities=6%  Similarity=0.028  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeEE--EEEecCCC-EEEEE
Q 004885          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ--MRFQPRLG-RILAA  700 (725)
Q Consensus       651 ~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~s--v~fspdg~-~Lla~  700 (725)
                      .+. ++++++.|+.++.||.++|+.+.++.....+..  +.|..+|+ ||++.
T Consensus       487 agg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         487 AGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCC-EEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            455 666889999999999999999999987444322  55666776 44433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.71  E-value=0.17  Score=54.83  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeE--EEEEecCCC-
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLG-  695 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~--sv~fspdg~-  695 (725)
                      |.|.-||+.+++..-..-.  .....+-.+.-.+. ++++++.||.++.+|.++|+.+..++....+.  -+.|..+|+ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~--~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccC--CCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4577788888762222111  11121112223445 66689999999999999999999998744332  356667776 


Q ss_pred             EEEEEE
Q 004885          696 RILAAA  701 (725)
Q Consensus       696 ~Lla~s  701 (725)
                      ||++.+
T Consensus       515 yv~v~a  520 (560)
T d1kv9a2         515 YVAIMA  520 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.69  E-value=0.1  Score=56.88  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=48.5

Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       662 Dg~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      .|.|.-+|+.+++++..+....++..-.+...++.+++++.|+.++.||.+||+.+-+++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            367888999999999888865554433345667888899889999999999999998775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.63  E-value=0.22  Score=54.13  Aligned_cols=79  Identities=13%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeE--EEEEecCCCE
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGR  696 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V~--sv~fspdg~~  696 (725)
                      |.|..+|+.+++..-+...+.  ...+=...-.+. ++++++.|+.++.+|.++|+.+..+.....+.  -|.|..||+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCC--CCCcceeEecCC-EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            356667777766222222111  111101122344 66679999999999999999999998744443  3667778764


Q ss_pred             -EEEE
Q 004885          697 -ILAA  700 (725)
Q Consensus       697 -Lla~  700 (725)
                       |++.
T Consensus       521 Yi~v~  525 (571)
T d2ad6a1         521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4343

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.53  E-value=0.84  Score=47.04  Aligned_cols=101  Identities=10%  Similarity=0.032  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-------------
Q 004885          558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-------------  618 (725)
Q Consensus       558 V~~i~fSpdg~~LaSg-s~D----g~V~IWdl~~~~~i~-~l~~H~~~V~~IafsPd~~~Lasgs~D-------------  618 (725)
                      +..+++|||+++||.+ +.+    ..|+++|+.+++.+. .+..  .....++|.+|+..|+-...|             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            4566789999988743 333    379999999998764 2221  123578899999987655433             


Q ss_pred             ---CeEEEEECCCCCe-eeEEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004885          619 ---RTVRVWDTENPDY-SLRTFTGH--STTVMSLDFHPSKEDLLCSCD  660 (725)
Q Consensus       619 ---gtIrvWDl~~~~~-~l~~~~~h--~~~V~sl~fsP~g~~llaSgs  660 (725)
                         ..|.+|.+.+... .+..+...  ...+..+..+.++++++++..
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEee
Confidence               2578888877542 23334333  235677888999998776554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.07  E-value=0.49  Score=51.53  Aligned_cols=59  Identities=10%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             CcEEEEECCCCeeEEEEecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 004885          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (725)
Q Consensus       663 g~I~IwDl~t~~~v~~~~~~~~V~sv~fspdg~~Lla~s~Dg~V~IwDl~tg~~v~~l~  721 (725)
                      |.|.-||+.+++.+........+.+=.+...++.+++++.|+.++.||.+||+.+-+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            46888899999988777654443333334467888889999999999999999997775

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.70  E-value=2.8  Score=41.73  Aligned_cols=136  Identities=10%  Similarity=0.038  Sum_probs=84.3

Q ss_pred             cCCCC-EEEEEe---CCCcEEEEECCCC--eE--EEEec-cCCCCeEEEEEcCCCCEEEEEeC---------------CC
Q 004885          564 SPDGK-LLATGG---HDKKAVLWCTESF--TV--KSTLE-EHTQWITDVRFSPSLSRLATSSA---------------DR  619 (725)
Q Consensus       564 Spdg~-~LaSgs---~Dg~V~IWdl~~~--~~--i~~l~-~H~~~V~~IafsPd~~~Lasgs~---------------Dg  619 (725)
                      ..++. +|++..   ...+|.||++...  +.  +.++. ......++|++..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            44666 455553   3467888887532  22  22222 12345789999988888887321               12


Q ss_pred             eEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeE---EEEecCCCeEEEEEecCCCE
Q 004885          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQPRLGR  696 (725)
Q Consensus       620 tIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v---~~~~~~~~V~sv~fspdg~~  696 (725)
                      +..+|..+.+. . ......-...+.|+++|+++.++++-...+.|++|++.....+   ..+.....+-.+.+.+.++.
T Consensus       187 ~g~v~~~~~~~-~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~  264 (340)
T d1v04a_         187 WSFVTYYSPND-V-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD  264 (340)
T ss_dssp             CEEEEEECSSC-E-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred             ceeEEEEcCCc-e-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence            34555555444 2 2222233568999999999989988888999999999754322   22333566788888875555


Q ss_pred             EEEEE
Q 004885          697 ILAAA  701 (725)
Q Consensus       697 Lla~s  701 (725)
                      +.+++
T Consensus       265 lwva~  269 (340)
T d1v04a_         265 LWVGC  269 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.21  E-value=4.3  Score=39.83  Aligned_cols=151  Identities=9%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEe---CCCeEE
Q 004885          556 SKVESCHFSPDGKLLATGG---H----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS---ADRTVR  622 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs---~----Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~---~~Lasgs---~DgtIr  622 (725)
                      ..|..-..+++.++++..+   .    .|.+-+|.++. +.-..+++|......+.+.-+.   ..|+.+.   ..+.++
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLh  226 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  226 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEE
Confidence            4577778888999776432   2    35678888765 3445778887666666554321   2333322   236788


Q ss_pred             EEECCCCCe--------eeEEEec---CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeEEEEE
Q 004885          623 VWDTENPDY--------SLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF  690 (725)
Q Consensus       623 vWDl~~~~~--------~l~~~~~---h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~-~~~V~sv~f  690 (725)
                      |-++..+..        .+..+..   -.+.-.++..++.-. ++..-+.-|.|++||++++.|+..-+. ...|...+-
T Consensus       227 IiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~  305 (327)
T d1utca2         227 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  305 (327)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceEEecc
Confidence            888876321        1111111   124456777887766 566677789999999999999988775 555665555


Q ss_pred             ecCCCEEEEEEcCCeEEE
Q 004885          691 QPRLGRILAAAIENYISI  708 (725)
Q Consensus       691 spdg~~Lla~s~Dg~V~I  708 (725)
                      .....-+++...+|.|.-
T Consensus       306 ~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         306 HEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             ETTTTEEEEEETTSEEEE
T ss_pred             CCCCceEEEECCCCeEEE
Confidence            555555666666666543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.04  E-value=0.33  Score=48.54  Aligned_cols=110  Identities=12%  Similarity=0.021  Sum_probs=70.2

Q ss_pred             EcCCCCEEEEEeCCC-----------eEEEEECCCCCee-e-EEEecCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEEC
Q 004885          605 FSPSLSRLATSSADR-----------TVRVWDTENPDYS-L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSI  670 (725)
Q Consensus       605 fsPd~~~Lasgs~Dg-----------tIrvWDl~~~~~~-l-~~~~~h~~~V~sl~fsP~g~~llaSgs~D-g~I~IwDl  670 (725)
                      ...+++.++.|+.+.           .+.+||..+.... + .....+.......++.+++. +++.|+.+ ..+.+||.
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecC
Confidence            344566666655321           3678999876521 1 12233444455678889987 66666544 58999999


Q ss_pred             CCCeeEEEEec--CCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCCe
Q 004885          671 NNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIE------NYISILDVETQV  715 (725)
Q Consensus       671 ~t~~~v~~~~~--~~~V~sv~fspdg~~Lla~s~D------g~V~IwDl~tg~  715 (725)
                      .+......-..  ......++..+||..++.++.+      ..+.+||..+.+
T Consensus       106 ~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            98776543222  2334567778888888887652      469999998875

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.61  E-value=1.9  Score=43.96  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~-----------~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWD  625 (725)
                      ....+++++...+|++|+.++ ++|..+..           .......  .-..|..++|+-+  .|+.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            366788888777888888775 66765321           1111111  1235888999744  45554 456688888


Q ss_pred             CCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEE------EecCCCeEEEEEecCCCEEEE
Q 004885          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRILA  699 (725)
Q Consensus       626 l~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~------~~~~~~V~sv~fspdg~~Lla  699 (725)
                      ...-. .......-...+..+.+.|.   .++.+..++.+.++++.++.....      +.....+.+++|++.|..+++
T Consensus       112 ~~~l~-~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         112 LEELS-EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSSTT-CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eeccc-cccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            77654 33444444567888888886   345666789999999998764332      223577899999988877877


Q ss_pred             EE
Q 004885          700 AA  701 (725)
Q Consensus       700 ~s  701 (725)
                      +.
T Consensus       188 ~~  189 (381)
T d1xipa_         188 WR  189 (381)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.53  E-value=3.1  Score=43.04  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eec------cCCCCeEEEEEcCC---CCEEEE
Q 004885          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE------EHTQWITDVRFSPS---LSRLAT  614 (725)
Q Consensus       555 ~~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~------~H~~~V~~IafsPd---~~~Las  614 (725)
                      -..-++|+|.||+++|++--.+|+|++++..++....  .+.      .-......|+|+|+   ..+|+.
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            3457899999999988877557999999877765432  221      11356789999995   445544

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.33  E-value=0.025  Score=44.52  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHhcCCCCC
Q 004885            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVST   40 (725)
Q Consensus         9 ~~~L~~yiydyl~k~~~~~~A~~f~~e~~~~~   40 (725)
                      +.-||.-|++||..+|+.++|.+|.+|++++.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            34689999999999999999999999998763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.47  E-value=1.9  Score=46.66  Aligned_cols=152  Identities=11%  Similarity=0.066  Sum_probs=95.0

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCC-----------CCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCC
Q 004885          566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHT-----------QWITDVRFSPS----LSRLATSSADRTVRVWDTENP  629 (725)
Q Consensus       566 dg~~LaSgs~Dg~V~IWdl-~~~~~i~~l~~H~-----------~~V~~IafsPd----~~~Lasgs~DgtIrvWDl~~~  629 (725)
                      ++.++++++.++.|...|. ++++.+..+....           ...+.+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            5555555566678888887 5788888774211           01134555443    347889999999999999999


Q ss_pred             CeeeEEEe-cC--C-CCeEE-EEEccCCCeEEEEEe------CCCcEEEEECCCCeeEEEEecCC---------------
Q 004885          630 DYSLRTFT-GH--S-TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS---------------  683 (725)
Q Consensus       630 ~~~l~~~~-~h--~-~~V~s-l~fsP~g~~llaSgs------~Dg~I~IwDl~t~~~v~~~~~~~---------------  683 (725)
                      +. +-.+. +.  . ..+++ ..+. + ..++ .+.      ..|.|+-+|+++|+.+..+....               
T Consensus       142 ~~-~w~~~~~d~~~~~~~t~~P~v~-~-~~vi-vg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~  217 (596)
T d1w6sa_         142 ET-VWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (596)
T ss_dssp             CE-EEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             ce-eccccccccccccccccCCcEE-C-CeEE-EeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccc
Confidence            84 33332 11  1 11111 1111 2 2233 333      24889999999999998875210               


Q ss_pred             ------------------------CeEEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEe
Q 004885          684 ------------------------GATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQ  721 (725)
Q Consensus       684 ------------------------~V~sv~fspdg~~Lla~s~D----------------g~V~IwDl~tg~~v~~l~  721 (725)
                                              ....+.+++..+.++.+..+                +.|...|++||+.+-.++
T Consensus       218 ~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q  295 (596)
T d1w6sa_         218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (596)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccc
Confidence                                    12345677777777766442                358889999999988776

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.22  E-value=1.1  Score=48.26  Aligned_cols=79  Identities=10%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             CeEEEEECCCCCeeeEEEecCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--EEEEEecCCC-
Q 004885          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLG-  695 (725)
Q Consensus       619 gtIrvWDl~~~~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t~~~v~~~~~~~~V--~sv~fspdg~-  695 (725)
                      |.|.-+|+.+++. +-.+..+ .++..-.....+. ++++++.||.++.||.++|+.+..++....+  .-|.|..+|+ 
T Consensus       466 G~l~AiD~~TG~i-~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcE-EeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            5677788888773 3222221 1222112234455 6667999999999999999999999874333  2367777886 


Q ss_pred             EEEEE
Q 004885          696 RILAA  700 (725)
Q Consensus       696 ~Lla~  700 (725)
                      ||++.
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.98  E-value=16  Score=36.23  Aligned_cols=142  Identities=9%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             cEEEEECCC-CeEEEEeccC-------CCCeEEEEE--cCC-CC-EEEEEeCCCeEEEEECCC---CC---eeeEEEecC
Q 004885          578 KAVLWCTES-FTVKSTLEEH-------TQWITDVRF--SPS-LS-RLATSSADRTVRVWDTEN---PD---YSLRTFTGH  639 (725)
Q Consensus       578 ~V~IWdl~~-~~~i~~l~~H-------~~~V~~Iaf--sPd-~~-~Lasgs~DgtIrvWDl~~---~~---~~l~~~~~h  639 (725)
                      +|.+|.+.. ...+..+...       ...|+.+|+  ++. +. ++++...+|.+..|.+..   +.   ..++.|. .
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            577787653 3333333321       124667776  664 44 566777789998887632   22   2334443 3


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCC-----CeeEEEEec---CCCeEEEEEe--cCC-CEEEEEEc-CCeEE
Q 004885          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKC---QSGATQMRFQ--PRL-GRILAAAI-ENYIS  707 (725)
Q Consensus       640 ~~~V~sl~fsP~g~~llaSgs~Dg~I~IwDl~t-----~~~v~~~~~---~~~V~sv~fs--pdg-~~Lla~s~-Dg~V~  707 (725)
                      ...+..|.++.....|+ .+-.+..|+.++.+.     +..+.....   ...+..|+.-  .++ ++|++++. +++..
T Consensus       179 ~~q~EGCVvDde~~~Ly-isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             SSCEEEEEEETTTTEEE-EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCccceEEEeCCCCcEE-EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            45789999999877666 556566666666542     222222221   3456777643  333 36666655 78999


Q ss_pred             EEECCCC-eEEEEEe
Q 004885          708 ILDVETQ-VCRLKLQ  721 (725)
Q Consensus       708 IwDl~tg-~~v~~l~  721 (725)
                      |||.++. +.+.+|.
T Consensus       258 vydr~~~~~~~g~F~  272 (353)
T d1h6la_         258 IYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEESSTTCCEEEEEE
T ss_pred             EEecCCCccccceEE
Confidence            9999874 7776664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.74  E-value=7.9  Score=39.08  Aligned_cols=91  Identities=7%  Similarity=-0.010  Sum_probs=58.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEE
Q 004885          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (725)
Q Consensus       557 ~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~~l~~H~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~l~~~  636 (725)
                      .|..++|+.  ..|++. .++.+..+++...........-..++..+.+.|.  .++....++.+.++++.+... ....
T Consensus        88 ~v~~vafs~--d~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~-~~~~  161 (381)
T d1xipa_          88 DVIFVCFHG--DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQLA  161 (381)
T ss_dssp             TEEEEEEET--TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred             CeEEEEeeC--CEEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc-cccc
Confidence            588899964  445555 3566888887764444443334567888888775  577777899999999988762 1111


Q ss_pred             e-----cCCCCeEEEEEccCCC
Q 004885          637 T-----GHSTTVMSLDFHPSKE  653 (725)
Q Consensus       637 ~-----~h~~~V~sl~fsP~g~  653 (725)
                      .     .-.+.+.+++|++.|.
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCE
T ss_pred             CCcceEEecCCceEEEEeCCcE
Confidence            1     1225566777766655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.65  E-value=4.8  Score=41.57  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=62.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eEEEe------cCCCCeEEEEEccC---CCeEEEEEeC-----
Q 004885          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFT------GHSTTVMSLDFHPS---KEDLLCSCDN-----  661 (725)
Q Consensus       597 ~~~V~~IafsPd~~~Lasgs~DgtIrvWDl~~~~~~-l~~~~------~h~~~V~sl~fsP~---g~~llaSgs~-----  661 (725)
                      -...++|+|.|++++|++.-.+|+|++++..++... +..+.      .-......|+|+|+   ..+++++-..     
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            356789999999998888766899999998776521 11111      11246789999995   3445554321     


Q ss_pred             -C----C--cEEEEECCCCe-----eE---EEEec--CCCeEEEEEecCCCEEEEEEc
Q 004885          662 -N----S--EIRYWSINNGS-----CA---GVFKC--QSGATQMRFQPRLGRILAAAI  702 (725)
Q Consensus       662 -D----g--~I~IwDl~t~~-----~v---~~~~~--~~~V~sv~fspdg~~Lla~s~  702 (725)
                       +    .  .|+.+......     ..   ..+..  ......|.|.|||..+++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    1  13333333221     11   11111  345788999999877666654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.80  E-value=14  Score=34.32  Aligned_cols=151  Identities=12%  Similarity=0.111  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCC
Q 004885          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS----ADRTVRVWDTENP  629 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~Dg~V~IWdl~~~~~i~--~l~~H~~~V~~IafsPd~~~Lasgs----~DgtIrvWDl~~~  629 (725)
                      -.|.++++. |.+..++|+....+.+|-++.++...  .+.+ -+.|++|    .+++++-.+    .-..+.+-|+.++
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEec----cCCeEEEEeeecCCcceEEEEecccC
Confidence            346666664 44577788887788888888776432  2222 2334444    233433221    1112333345443


Q ss_pred             CeeeEEEecCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCCCeeEEEEec--------CCCeEEEEEecCCCEEE
Q 004885          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRIL  698 (725)
Q Consensus       630 ~~~l~~~~~h~~~V~sl~fsP~g~~llaSgs~---Dg~I~IwDl~t~~~v~~~~~--------~~~V~sv~fspdg~~Ll  698 (725)
                      .  ++.|....+.++...+.+..+ + ++.-.   +.....+|++.++..+.--.        .-.|+-+-+.|+++.++
T Consensus       178 ~--lri~tpkeGS~~~ay~~~gnK-V-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         178 G--LRVFDSGEGSFSSASISPGMK-V-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             E--EEEECCSSEEEEEEEECTTSC-E-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             C--EEEecCCCCcccceeEccCce-e-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEE
Confidence            3  555555556677777777655 3 23221   22233568887665432211        23356667899988888


Q ss_pred             EEEcCCeEEEEECCCCeEEE
Q 004885          699 AAAIENYISILDVETQVCRL  718 (725)
Q Consensus       699 a~s~Dg~V~IwDl~tg~~v~  718 (725)
                      .+-.||.-++|+  +|+.+.
T Consensus       254 iakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         254 VARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEEETTEEEEEE--TTEEEC
T ss_pred             EEecCCchheee--cceEec
Confidence            888999988886  344443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.08  E-value=27  Score=34.83  Aligned_cols=159  Identities=11%  Similarity=0.085  Sum_probs=87.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeC---CCcEEEE--ECCCCe--------EEEEeccCCCCeEEEEEcCCCCEEEEEeC---CC
Q 004885          556 SKVESCHFSPDGKLLATGGH---DKKAVLW--CTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATSSA---DR  619 (725)
Q Consensus       556 ~~V~~i~fSpdg~~LaSgs~---Dg~V~IW--dl~~~~--------~i~~l~~H~~~V~~IafsPd~~~Lasgs~---Dg  619 (725)
                      ..+..+..+.++++++....   +....+|  |+....        ....+......+..+.. .++.+++....   ++
T Consensus       233 ~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~  311 (430)
T d1qfma1         233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNY  311 (430)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTC
T ss_pred             ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-CCceeecccCcccccc
Confidence            45677888999998764332   3334444  443211        12223322333333332 23333343332   46


Q ss_pred             eEEEEECCCCCe-eeEEEec-CCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCCCeeEEEEec-CCCeEEEEEecCC
Q 004885          620 TVRVWDTENPDY-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKC-QSGATQMRFQPRL  694 (725)
Q Consensus       620 tIrvWDl~~~~~-~l~~~~~-h~~~V~sl~fsP~g~~llaSgs~Dg--~I~IwDl~t~~~v~~~~~-~~~V~sv~fspdg  694 (725)
                      .|...++..+.. ....+.. +...+..-.+...+.++++....++  .|+++++.++.....+.. .+.|..+...++.
T Consensus       312 ~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         312 RLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             eeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC
Confidence            777778776542 1234443 4444555455555565666665565  588999998876655443 3345555555555


Q ss_pred             CEEEEEEcC----CeEEEEECCCCe
Q 004885          695 GRILAAAIE----NYISILDVETQV  715 (725)
Q Consensus       695 ~~Lla~s~D----g~V~IwDl~tg~  715 (725)
                      ..+....++    .++..||+.+++
T Consensus       392 ~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         392 TEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEcCCCCCCeEEEEECCCCC
Confidence            555544333    789999999884