Citrus Sinensis ID: 004896

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRISIEKSSSSEFFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKTGLMRQAA
cccccccccHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccEEEEcccEEccccccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccccccccEEccccccccccccccccccccEEEEEEEccccEEEEEEEEccccccEEEcccHHHHHHccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccccccEEEEEEccccccccEEEccEEEEEEcccccccccccccccEEEEcccccccccccEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEcccccccHHHHHHHHHHHHcccccccccEEEEEcccccEEEcccccHHHHHHccEEEEEEcccccccccccccccccccccccccccccccccccc
cccccccccHHHHHHHcccccEccccccEEEEcccccHHHHHccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccEEEEEEEEccccccEEEcccccEEEcccEEEEccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccEEEEEEEccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEcccccHHHHHHHHHHHHcccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEccccHHccccccEEcccccccccccccccccccccc
mkeveksidpqlwhacagsmvqipplnstvfyfpqghaehslgsvnfpsssripplifcrvsslkfladsetDEVYAKIklvpipaneidfednnlslnsvgsdsesekpaSFAKTltqsdanngggfsvprycaetifprldytadppvqtVVAKDVhgeiwkfrhiyrgtprrhllttgwstfvnqkklvagdSIVFLRAQDGDLCVGIRRakkgigggneypssgwnsnngscvtgnpfggfscfLREEENKMARngnmnlnsygsfnssgntrgnggrvkpEMVLEAVALAasgkpfevvyyprastpefCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISsvqvadpiswpnspwrllqvtwdepdllqnvkrVSPWLVELVsnmpvihlspfsparkklrlpqqldfpfdgqftmplfsgnplgpssplcclsdntsagiqgarhaqfgisssdfhvnnklQSGLFLsslqrftpnsrdfdgiltshtnsseNLSCLLTMgnsnqnleksenIKKHQFllfgqpirteqqishscsddvvsqvlgksssdghsdkvkassdgsgstheqrisieksssseffwnrsfqvtesgldtghckvflesedvgrtldLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQdasgaikrtgdepfsdFMKSAKRLTILMgsgsdsvgrtwitgmrtpkngldasnktglmrqaa
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVpipaneidfedNNLSLNSVGSDSESEKPASFAKTltqsdanngggfSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWkfrhiyrgtprrHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLgksssdghsdkvkassdgsgstheQRISieksssseffWNRSFQVTESGLDTGHCKVFlesedvgrtldlSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILmgsgsdsvgrtwitgmrtpkngldasnktglmrqaa
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVgirrakkgigggNEYPSSGWNSNNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYgsfnssgntrgnggRVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRisieksssseffWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKTGLMRQAA
**********QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDF***********************************GFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGNPFGGFSCFLR************************************MVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPL***SPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFT*******GI************CL******************HQFLLFGQPI*******************************************************FFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAI****************RLTILMG*****VGRTWIT**********************
*****KSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSL*********RIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANE***********************SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYT*DPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKK**********************GNPFGGF*******************************************LEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVS*********************************************************IQGARHAQFGISSSDF***********************DFDGILTSHTNSSENLS***************************QPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRISIEKSSS***************************E**G*TLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTI*************************************
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLN***************KTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQV********************************SSSSEFFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKTGLMRQAA
*****KSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPA***********************PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGI************S**GSCVTGNPFGGFSCFLREEENKMAR***********************RVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSP*********************************P*********AGIQGA*HAQFGISSSDFHVNNKLQS**FLS*LQR******************************************KHQFLLFGQPIRTE******************************************************************DTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGS*S*****************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRISIEKSSSSEFFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKTGLMRQAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query724 2.2.26 [Sep-21-2011]
Q653H7700 Auxin response factor 18 yes no 0.932 0.964 0.607 0.0
Q9SKN5693 Auxin response factor 10 yes no 0.911 0.952 0.602 0.0
Q9AV47698 Auxin response factor 22 no no 0.910 0.944 0.582 0.0
Q93YR9670 Auxin response factor 16 no no 0.895 0.967 0.564 0.0
Q6K223681 Auxin response factor 8 O no no 0.893 0.950 0.542 0.0
Q7XKK6699 Auxin response factor 10 no no 0.899 0.931 0.490 1e-179
Q01I35699 Auxin response factor 10 N/A no 0.899 0.931 0.490 1e-179
Q84WU6585 Auxin response factor 17 no no 0.595 0.736 0.433 6e-98
Q6YVY0678 Auxin response factor 7 O no no 0.803 0.858 0.317 3e-67
Q0JCZ4673 Auxin response factor 9 O no no 0.799 0.860 0.310 1e-66
>sp|Q653H7|ARFR_ORYSJ Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1 Back     alignment and function desciption
 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/709 (60%), Positives = 519/709 (73%), Gaps = 34/709 (4%)

Query: 2   KEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGS--VNFPSSSRIPPLIFC 59
           +E +K +DPQLWHACAG MVQ+PP++S V+YFPQGHAEH+ G   V FP   R+P L+ C
Sbjct: 14  RESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGG-RVPALVLC 72

Query: 60  RVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDS--ESEKPASFAKTL 117
           RV+ ++F+AD +TDEV+AKI+LVP+ ANE  +  +        + +  + EKPASFAKTL
Sbjct: 73  RVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTL 132

Query: 118 TQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHL 177
           TQSDANNGGGFSVPRYCAETIFPRLDY+ADPPVQTV+AKDVHG +WKFRHIYRGTPRRHL
Sbjct: 133 TQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHL 192

Query: 178 LTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCV 237
           LTTGWSTFVNQKKLVAGDSIVF+R ++GDLCVGIRRAKKG  GG E+             
Sbjct: 193 LTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAA 252

Query: 238 TGNPFGGFSCFLREEE--NKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALA 295
            GN +GGFS FLR ++  NKMA              + G  R    RV+PE V+EA  LA
Sbjct: 253 GGN-YGGFSMFLRGDDDGNKMAAA------------ARGKVRA---RVRPEEVVEAANLA 296

Query: 296 ASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTIS 355
            SG+PFEVVYYPRASTPEFCVKA AV+AAMR  W  GMRFKMAFETEDSSRISWFMGT+S
Sbjct: 297 VSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVS 356

Query: 356 SVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKL 415
           +VQVADPI WPNSPWRLLQV+WDEPDLLQNVKRVSPWLVELVSNMP IHL+PFSP RKKL
Sbjct: 357 AVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKL 416

Query: 416 RLPQQLDFPFDGQFTMPLFSGNPLGPS-SPLCCLSDNTSAGIQGARHAQFGISSSDFHVN 474
            +P   + P DGQF  P+F GNPL     P+C   D T AGIQGARHAQFGIS SD H+ 
Sbjct: 417 CVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHL- 475

Query: 475 NKLQSGLFLSSLQRFTP--NSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKK- 531
           NKLQS L    L +       R   G++  H  + +++SCLLT+G S QN +KS+  K  
Sbjct: 476 NKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIG-SPQNNKKSDGKKAP 534

Query: 532 HQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKV--KASSDGSGSTHEQRISI 589
            Q +LFG+PI TEQQIS     D  S  + KSSSDG+++    K++SD S     Q  + 
Sbjct: 535 AQLMLFGKPILTEQQISLG---DAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTT 591

Query: 590 EKSSSSEFFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGI 649
           +  S       +  +V + GL+TGHCKVF++SEDVGRTLDLSV+ SYEELYRRLA MFGI
Sbjct: 592 DNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGI 651

Query: 650 ERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGR 698
           E+++++SHV Y+DA+GA+K TGDEPFS+F K+A+RL IL  +  D++ R
Sbjct: 652 EKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR 700
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SKN5|ARFJ_ARATH Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1 Back     alignment and function description
>sp|Q9AV47|ARFV_ORYSJ Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1 Back     alignment and function description
>sp|Q93YR9|ARFP_ARATH Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q6K223|ARFH_ORYSJ Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1 Back     alignment and function description
>sp|Q7XKK6|ARFJ_ORYSJ Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3 Back     alignment and function description
>sp|Q01I35|ARFJ_ORYSI Auxin response factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2 Back     alignment and function description
>sp|Q84WU6|ARFQ_ARATH Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q6YVY0|ARFG_ORYSJ Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1 Back     alignment and function description
>sp|Q0JCZ4|ARFI_ORYSJ Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query724
255578143709 Auxin response factor, putative [Ricinus 0.959 0.980 0.743 0.0
225435334711 PREDICTED: auxin response factor 18-like 0.972 0.990 0.732 0.0
224132500708 predicted protein [Populus trichocarpa] 0.954 0.975 0.706 0.0
449456014716 PREDICTED: auxin response factor 18-like 0.975 0.986 0.688 0.0
224104635690 predicted protein [Populus trichocarpa] 0.943 0.989 0.701 0.0
337273025699 auxin response factor 10 [Solanum lycope 0.953 0.987 0.657 0.0
356542623701 PREDICTED: auxin response factor 18-like 0.951 0.982 0.661 0.0
350537209699 auxin response factor 10 [Solanum lycope 0.953 0.987 0.657 0.0
255556996702 Auxin response factor, putative [Ricinus 0.941 0.971 0.660 0.0
356539348697 PREDICTED: auxin response factor 18-like 0.946 0.982 0.651 0.0
>gi|255578143|ref|XP_002529941.1| Auxin response factor, putative [Ricinus communis] gi|223530571|gb|EEF32449.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/722 (74%), Positives = 595/722 (82%), Gaps = 27/722 (3%)

Query: 1   MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCR 60
           MKEVEK +DPQLWHACAGSMVQIPP+NS VFYFPQGHAEHS   V+F  SSRIP L+ CR
Sbjct: 1   MKEVEKRLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDF--SSRIPSLVLCR 58

Query: 61  VSSLKFLADSETDEVYAKIKLVPIPANEIDFEDN-NLSLNSVGSDSESEKPASFAKTLTQ 119
           V+ +K+LADSETDEVYAKI L P+P+NE+DF D   L   S    + +EKP SFAKTLTQ
Sbjct: 59  VAGVKYLADSETDEVYAKISLFPLPSNELDFGDEIGLCDTSTNGTNSTEKPTSFAKTLTQ 118

Query: 120 SDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLT 179
           SDANNGGGFSVPRYCAETIFPRLDY+ADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLT
Sbjct: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLT 178

Query: 180 TGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGN---EYPSSGWNSNNGSC 236
           TGWSTFVNQKKLVAGDSIVFLRA+ GDLCVGIRRAK+GIGGGN     P SGW +N  SC
Sbjct: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCVGIRRAKRGIGGGNGPESSPPSGWTTN-ASC 237

Query: 237 VTGNPF-GGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALA 295
           V  NP+ GGFS FL+E+E+K  RNG             G  RG   RVK E VLE+ ALA
Sbjct: 238 V--NPYTGGFSLFLKEDESKGLRNG-------------GGIRGKV-RVKAEEVLESAALA 281

Query: 296 ASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTIS 355
           A+G+PFEVVYYPRASTPEFCVKAS+V+A+ R+ W  GMRFKMAFETEDSSRISWFMGTI+
Sbjct: 282 ANGQPFEVVYYPRASTPEFCVKASSVRASTRIQWCSGMRFKMAFETEDSSRISWFMGTIA 341

Query: 356 SVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKL 415
           SVQVADPI WPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSP RKKL
Sbjct: 342 SVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKL 401

Query: 416 RLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNN 475
           RLPQ LDFP DGQF +P FSGNPLGPSSPLCCLSDNT AGIQGARHAQFGIS SD  + N
Sbjct: 402 RLPQHLDFPLDGQFQLPSFSGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQL-N 460

Query: 476 KLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFL 535
           KLQSGLFLSSLQRF  +SR  +  + S+TNS+ENLSCLLTMGNSN N EKS+N+K+HQF+
Sbjct: 461 KLQSGLFLSSLQRFNSHSRVSESFMKSNTNSNENLSCLLTMGNSNTNSEKSDNVKRHQFV 520

Query: 536 LFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRISIEKSSSS 595
           LFGQPI TEQQIS SCS D VSQVL K  S   S +     D  GST E++ S EKS+S+
Sbjct: 521 LFGQPILTEQQISRSCSTDAVSQVLSKKLSSDESPEKAKIHDVLGSTPEKQTSPEKSAST 580

Query: 596 EFFWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDML 655
              W +S   TE+GLD GHCKVFLESEDVGRTLDLSVL SYEELY RLA MFGIERS+ML
Sbjct: 581 GLSW-QSLHTTETGLDAGHCKVFLESEDVGRTLDLSVLGSYEELYSRLANMFGIERSEML 639

Query: 656 SHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG-SGSDSVGRTWITGMRTPKNGLDAS 714
            HVLY+DA+GAI++TGDEPFS F K+AKRLTILM  + SD++GR WI GMR+ +NGL+AS
Sbjct: 640 HHVLYRDAAGAIRQTGDEPFSVFAKTAKRLTILMNPASSDNIGRPWIRGMRSTENGLEAS 699

Query: 715 NK 716
           NK
Sbjct: 700 NK 701

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435334|ref|XP_002282437.1| PREDICTED: auxin response factor 18-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132500|ref|XP_002328300.1| predicted protein [Populus trichocarpa] gi|222837815|gb|EEE76180.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456014|ref|XP_004145745.1| PREDICTED: auxin response factor 18-like [Cucumis sativus] gi|449531181|ref|XP_004172566.1| PREDICTED: auxin response factor 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224104635|ref|XP_002313508.1| predicted protein [Populus trichocarpa] gi|222849916|gb|EEE87463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|337273025|gb|AEI70250.1| auxin response factor 10 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|356542623|ref|XP_003539766.1| PREDICTED: auxin response factor 18-like [Glycine max] Back     alignment and taxonomy information
>gi|350537209|ref|NP_001234796.1| auxin response factor 10 [Solanum lycopersicum] gi|300676100|gb|ADK26472.1| auxin response factor 10 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|255556996|ref|XP_002519531.1| Auxin response factor, putative [Ricinus communis] gi|223541394|gb|EEF42945.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539348|ref|XP_003538160.1| PREDICTED: auxin response factor 18-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query724
TAIR|locus:2057517693 ARF10 "auxin response factor 1 0.716 0.748 0.621 3.1e-214
TAIR|locus:2029436585 ARF17 "auxin response factor 1 0.274 0.340 0.516 3e-95
TAIR|locus:2126460670 ARF16 "auxin response factor 1 0.535 0.579 0.504 2.5e-90
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.276 0.246 0.462 7.9e-77
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.274 0.183 0.485 2.3e-76
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.263 0.204 0.482 9e-72
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.263 0.307 0.5 3.3e-71
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.267 0.322 0.482 2.9e-70
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.276 0.253 0.481 3.7e-68
TAIR|locus:2035454 902 MP "MONOPTEROS" [Arabidopsis t 0.273 0.219 0.447 3.6e-67
TAIR|locus:2057517 ARF10 "auxin response factor 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1658 (588.7 bits), Expect = 3.1e-214, Sum P(2) = 3.1e-214
 Identities = 354/570 (62%), Positives = 408/570 (71%)

Query:     3 EVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVS 62
             E EKS+DPQLWHACAGSMVQIP LNSTVFYF QGH EH+    +F  + R+PPLI CRV 
Sbjct:     2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDF-HAPRVPPLILCRVV 60

Query:    63 SLKFLADSETDEVYAKIKLVPIPANEIDFE-DNNLSLNSVGSDSES---EKPASFAKTLT 118
             S+KFLAD+ETDEV+AKI L+P+P N++D E D  L L    SD      EKPASFAKTLT
Sbjct:    61 SVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLT 120

Query:   119 QSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLL 178
             QSDANNGGGFSVPRYCAETIFPRLDY+A+PPVQTV+AKD+HGE WKFRHIYRGTPRRHLL
Sbjct:   121 QSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLL 180

Query:   179 TTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVXXXXXXXXXXXXNEYPSSGWNSNNGSCVT 238
             TTGWSTFVNQKKL+AGDSIVFLR++ GDLCV                  G  SN GS   
Sbjct:   181 TTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR----------GGLGSNAGS--- 227

Query:   239 GNPFGGFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRVKPEMVLEAVALAASG 298
              NP+ GFS FLR++E+    +  M +                 RV+ E V EAVA AA G
Sbjct:   228 DNPYPGFSGFLRDDESTTTTSKLMMMKR---NGNNDGNAAATGRVRVEAVAEAVARAACG 284

Query:   299 KPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQ 358
             + FEVVYYPRASTPEFCVKA+ V++AMR+ W  GMRFKMAFETEDSSRISWFMGT+S+VQ
Sbjct:   285 QAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQ 344

Query:   359 VADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLP 418
             VADPI WPNSPWRLLQV WDEPDLLQNVKRVSPWLVELVSNMP IHLSPFSP RKK+R+P
Sbjct:   345 VADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSP-RKKIRIP 403

Query:   419 QQLDFPFDG-QFTM--PLFSGNPLGPSSPLCCLSD---NTSAGIQGARHAQ--FGISS-- 468
             Q  +FPF G +F +  P F+ N  G S  +C LS+   N  AGIQGAR AQ  FG  S  
Sbjct:   404 QPFEFPFHGTKFPIFSPGFANNGGGES--MCYLSNDNNNAPAGIQGARQAQQLFGSPSPS 461

Query:   469 --SDFHV-----NNKLQS-GLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSN 520
               SD ++     NNKL S  +FLSS   F P    +       + +S N+SC LTMGN  
Sbjct:   462 LLSDLNLSSYTGNNKLHSPAMFLSS---FNPRHHHYQA---RDSENSNNISCSLTMGNPA 515

Query:   521 --QNLEKSE-NIKKHQFLLFGQPIRTEQQI 547
               Q+ +KS  ++K HQF+LFGQPI TEQQ+
Sbjct:   516 MVQDKKKSVGSVKTHQFVLFGQPILTEQQV 545
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0035198 "miRNA binding" evidence=ISS
GO:0007389 "pattern specification process" evidence=IDA
GO:0048829 "root cap development" evidence=IGI;IMP
GO:0051301 "cell division" evidence=IGI
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP
GO:0009743 "response to carbohydrate stimulus" evidence=IMP
GO:0010154 "fruit development" evidence=IMP
GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0048441 "petal development" evidence=IMP
GO:0048442 "sepal development" evidence=IMP
GO:0048589 "developmental growth" evidence=IMP
TAIR|locus:2029436 ARF17 "auxin response factor 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126460 ARF16 "auxin response factor 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q653H7ARFR_ORYSJNo assigned EC number0.60780.93230.9642yesno
Q9SKN5ARFJ_ARATHNo assigned EC number0.60240.91160.9523yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query724
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 3e-37
pfam0236297 pfam02362, B3, B3 DNA binding domain 2e-25
smart0101996 smart01019, B3, B3 DNA binding domain 3e-22
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-19
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 4e-05
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 2e-04
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  133 bits (336), Expect = 3e-37
 Identities = 46/84 (54%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 291 AVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWF 350
           A   A++G PF V Y PRAST EF V  +    AM   +  GMRFKM FETEDSS   + 
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRF- 59

Query: 351 MGTISSVQVADPISWPNSPWRLLQ 374
            GTIS V   DPI WPNS WR LQ
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 724
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 99.97
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.71
KOG06441113 consensus Uncharacterized conserved protein, conta 99.34
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.05
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.48
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.39
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.66
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.64
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 95.53
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.17
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 95.15
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 94.53
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 93.35
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 92.21
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 91.68
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 89.56
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 89.42
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 87.48
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=3.8e-35  Score=257.03  Aligned_cols=83  Identities=58%  Similarity=0.944  Sum_probs=80.7

Q ss_pred             HHHHHHcCCCEEEEEecCCCCCceEEehHHHHHHHhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCc
Q 004896          291 AVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPW  370 (724)
Q Consensus       291 Aa~~aa~g~~F~V~Y~Pr~s~~EFvV~~~~y~~A~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~W  370 (724)
                      ||++|+++++|+|+||||++++||||++++|++||+++|++||||||+||+||+++++ |+|||++|++.||++||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~-~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERR-WQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccce-eeeEEeEeeccCCCCCCCCCc
Confidence            6899999999999999999999999999999999999999999999999999999965 599999999999999999999


Q ss_pred             cccc
Q 004896          371 RLLQ  374 (724)
Q Consensus       371 R~L~  374 (724)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query724
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-10
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 111 ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYR 170
           A F K +T SD        +P++ AE  FP            +  +DV+G++W+FR+ Y 
Sbjct: 12  ALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW 71
Query: 171 GTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--QDGDLCV 209
            + + ++LT GWS FV +K L AGD + F R+  QD  L +
Sbjct: 72  NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYI 112

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query724
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  135 bits (340), Expect = 2e-37
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 1/128 (0%)

Query: 102 GSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGE 161
              S     A F K +T SD        +P++ AE  FP            +  +DV+G+
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 162 IWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGG 221
           +W+FR+ Y  + + ++LT GWS FV +K L AGD + F R+   D  + I    +     
Sbjct: 63  VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122

Query: 222 NEY-PSSG 228
           +   PSSG
Sbjct: 123 DASGPSSG 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query724
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.95
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.71
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.54
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 94.69
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 94.19
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 93.24
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 89.43
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 87.66
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 87.63
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 85.09
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.95  E-value=2.4e-28  Score=227.98  Aligned_cols=113  Identities=30%  Similarity=0.499  Sum_probs=103.9

Q ss_pred             CCCcceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhh
Q 004896          106 ESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF  185 (724)
Q Consensus       106 ~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~F  185 (724)
                      ..+..++|.|+||+|||+++++|+||+++|+.|||.++..+.++.++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F   86 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF   86 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence            44566899999999999999999999999999999999876677899999999999999999999999999999999999


Q ss_pred             hhccCCCCCCEEEEEEecC--CcEEEEEEEcccCC
Q 004896          186 VNQKKLVAGDSIVFLRAQD--GDLCVGIRRAKKGI  218 (724)
Q Consensus       186 V~~KkL~aGDsVvF~R~en--G~L~VGIRR~~~~~  218 (724)
                      |++|+|++||+|+|++.++  +.|+|++||+....
T Consensus        87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            9999999999999999874  57999999988754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 724
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 2e-33
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 4e-21
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 7e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 2e-33
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 108 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRH 167
              A F K +T SD        +P++ AE  FP            +  +DV+G++W+FR+
Sbjct: 2   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRY 61

Query: 168 IYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--QDGDLCVGIRRAK 215
            Y  + + ++LT GWS FV +K L AGD + F R+  QD  L +G +   
Sbjct: 62  SYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 111
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query724
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.93
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.45
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.65
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 94.52
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2e-26  Score=207.80  Aligned_cols=107  Identities=33%  Similarity=0.555  Sum_probs=101.2

Q ss_pred             ceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhcc
Q 004896          110 PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQK  189 (724)
Q Consensus       110 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~K  189 (724)
                      .++|.|+||+|||++++||+||+++|++|||+++....++++.|.+.|.+|++|+|+|+||++.++|+|++||..||+++
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~   83 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEK   83 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHT
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHc
Confidence            37999999999999999999999999999999999888889999999999999999999999899999999999999999


Q ss_pred             CCCCCCEEEEEEec--CCcEEEEEEEccc
Q 004896          190 KLVAGDSIVFLRAQ--DGDLCVGIRRAKK  216 (724)
Q Consensus       190 kL~aGDsVvF~R~e--nG~L~VGIRR~~~  216 (724)
                      +|++||+|+|++..  +++++|++||+..
T Consensus        84 ~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          84 NLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99999999999984  6789999999875
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure