Citrus Sinensis ID: 004907
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 724 | 2.2.26 [Sep-21-2011] | |||||||
| F4K0E8 | 741 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.998 | 0.975 | 0.846 | 0.0 | |
| Q6K8J4 | 744 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.998 | 0.971 | 0.817 | 0.0 | |
| Q6MD85 | 654 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.860 | 0.952 | 0.502 | 0.0 | |
| Q8F1H5 | 663 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.856 | 0.935 | 0.411 | 1e-131 | |
| Q04YW2 | 663 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.828 | 0.904 | 0.418 | 1e-130 | |
| Q04UL2 | 663 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.828 | 0.904 | 0.418 | 1e-130 | |
| Q72TR2 | 663 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.856 | 0.935 | 0.408 | 1e-129 | |
| Q9PKY3 | 601 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.781 | 0.941 | 0.410 | 1e-125 | |
| A6LGR5 | 611 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.808 | 0.957 | 0.395 | 1e-116 | |
| Q64N34 | 626 | 4-hydroxy-3-methylbut-2-e | yes | no | 0.809 | 0.936 | 0.406 | 1e-115 |
| >sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1 | Back alignment and function desciption |
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Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/741 (84%), Positives = 678/741 (91%), Gaps = 18/741 (2%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
MATG LPA G+K DS +GF KS++ VR+CD R +S RRR +VIRNS N SD+AEL
Sbjct: 1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59
Query: 61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct: 60 QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119
Query: 121 VEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 163
V+EVMRIAD ACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct: 120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179
Query: 164 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223
CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239
Query: 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283
GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299
Query: 284 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 343
YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359
Query: 344 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 403
ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct: 360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419
Query: 404 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463
LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD ARLALKRL+D+SMGV
Sbjct: 420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479
Query: 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 523
I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct: 480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539
Query: 524 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 583
MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT G
Sbjct: 540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599
Query: 584 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 643
LLVDGLGDG++LEAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA
Sbjct: 600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 659
Query: 644 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 703
EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG+PGKIDLYVGKTVVKRGIAM +A
Sbjct: 660 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEA 719
Query: 704 TDALIQLIKDHGRWAEPPAEE 724
TDALI LIK+HGRW +PP +
Sbjct: 720 TDALIGLIKEHGRWVDPPVAD 740
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Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Is essential for chloroplast development and required for the salicylic acid (SA)-mediated disease resistance to biotrophic pathogens. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 1 |
| >sp|Q6K8J4|ISPG_ORYSJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPG PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6MD85|ISPG_PARUW 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8F1H5|ISPG_LEPIN 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q04YW2|ISPG_LEPBL 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q04UL2|ISPG_LEPBJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q72TR2|ISPG_LEPIC 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9PKY3|ISPG_CHLMU 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|A6LGR5|ISPG_PARD8 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1 | Back alignment and function description |
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| >sp|Q64N34|ISPG_BACFR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain YCH46) GN=ispG PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 724 | ||||||
| 164605000 | 740 | 4-hydroxy-3-methylbut-2-en-1-yl diphosph | 0.998 | 0.977 | 0.887 | 0.0 | |
| 225435309 | 740 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1- | 0.998 | 0.977 | 0.866 | 0.0 | |
| 147798613 | 740 | hypothetical protein VITISV_005654 [Viti | 0.998 | 0.977 | 0.863 | 0.0 | |
| 224106738 | 741 | predicted protein [Populus trichocarpa] | 0.998 | 0.975 | 0.862 | 0.0 | |
| 402770461 | 741 | hydroxymethylbutenyl diphosphate synthas | 0.998 | 0.975 | 0.862 | 0.0 | |
| 356543460 | 741 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1- | 0.998 | 0.975 | 0.853 | 0.0 | |
| 356550161 | 742 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1- | 0.998 | 0.974 | 0.849 | 0.0 | |
| 343466209 | 740 | 4-hydroxy-3-methylbut-2-en-1-yl diphosph | 0.998 | 0.977 | 0.855 | 0.0 | |
| 297793619 | 741 | hypothetical protein ARALYDRAFT_919295 [ | 0.998 | 0.975 | 0.848 | 0.0 | |
| 312282499 | 742 | unnamed protein product [Thellungiella h | 1.0 | 0.975 | 0.843 | 0.0 |
| >gi|164605000|dbj|BAF98296.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
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Score = 1366 bits (3536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/741 (88%), Positives = 697/741 (94%), Gaps = 18/741 (2%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
MATG +PASF GLK+RDS LGF KS+DFVRVCD ++ KSGR++ ++IRNS N ++ EL
Sbjct: 1 MATGAVPASFTGLKTRDSSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNS-NPGPEMVEL 59
Query: 61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIRVQTMTT+DTKDVAGT
Sbjct: 60 QPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSEHPIRVQTMTTSDTKDVAGT 119
Query: 121 VEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 163
VE+VMRIAD ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE
Sbjct: 120 VEQVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 179
Query: 164 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223
CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNH 239
Query: 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283
GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEM 299
Query: 284 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 343
YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL
Sbjct: 300 YVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 359
Query: 344 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 403
ANLGMRA+ +QQGVAPFEEKHRHYFDFQRRSGQLP+QKEGEEVDYRGVLHRDGSVLMSV
Sbjct: 360 ANLGMRASTVQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVC 419
Query: 404 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463
LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELP V+D+DARLALKRL+DISMGV
Sbjct: 420 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPPVEDNDARLALKRLIDISMGV 479
Query: 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 523
I PLSEQLTKPLP+AMVLVNL+ELSTGA+KLLPEGTRLVVS RGDE YEELEILKDIDAT
Sbjct: 480 IVPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPEGTRLVVSARGDEPYEELEILKDIDAT 539
Query: 524 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 583
MILHDLPF EDKIGRV AARRLFE+LS+N LNFPVIHHIQFPN IHRDDLVIGAGTN GA
Sbjct: 540 MILHDLPFTEDKIGRVHAARRLFEFLSDNALNFPVIHHIQFPNAIHRDDLVIGAGTNAGA 599
Query: 584 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 643
LLVDGLGDG+LLEAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQ+ISA
Sbjct: 600 LLVDGLGDGILLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQDISA 659
Query: 644 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 703
EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAME A
Sbjct: 660 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEGA 719
Query: 704 TDALIQLIKDHGRWAEPPAEE 724
TDALIQLIKDHGRW +PPAEE
Sbjct: 720 TDALIQLIKDHGRWVDPPAEE 740
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Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435309|ref|XP_002285130.1| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Vitis vinifera] gi|297746253|emb|CBI16309.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147798613|emb|CAN72185.1| hypothetical protein VITISV_005654 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224106738|ref|XP_002314268.1| predicted protein [Populus trichocarpa] gi|222850676|gb|EEE88223.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|402770461|gb|AFQ98370.1| hydroxymethylbutenyl diphosphate synthase [Camellia sinensis] | Back alignment and taxonomy information |
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| >gi|356543460|ref|XP_003540178.1| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356550161|ref|XP_003543457.1| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|343466209|gb|AEM42998.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Siraitia grosvenorii] | Back alignment and taxonomy information |
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| >gi|297793619|ref|XP_002864694.1| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata] gi|297310529|gb|EFH40953.1| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|312282499|dbj|BAJ34115.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 724 | ||||||
| TAIR|locus:2175851 | 741 | HDS "4-hydroxy-3-methylbut-2-e | 1.0 | 0.977 | 0.759 | 9.2e-297 | |
| GENEDB_PFALCIPARUM|PF10_0221 | 824 | PF10_0221 "GcpE protein" [Plas | 0.472 | 0.415 | 0.420 | 1.5e-116 | |
| UNIPROTKB|Q8IJH7 | 824 | PF10_0221 "GcpE protein" [Plas | 0.472 | 0.415 | 0.420 | 1.5e-116 | |
| UNIPROTKB|P73672 | 403 | ispG "4-hydroxy-3-methylbut-2- | 0.323 | 0.580 | 0.5 | 1.9e-98 | |
| UNIPROTKB|Q8DK70 | 402 | ispG "4-hydroxy-3-methylbut-2- | 0.320 | 0.577 | 0.482 | 1.6e-97 | |
| TIGR_CMR|CHY_1776 | 355 | CHY_1776 "1-hydroxy-2-methyl-2 | 0.328 | 0.670 | 0.360 | 7e-49 | |
| UNIPROTKB|O33350 | 387 | ispG "4-hydroxy-3-methylbut-2- | 0.350 | 0.656 | 0.370 | 1e-47 | |
| TIGR_CMR|SPO_2594 | 375 | SPO_2594 "1-hydroxy-2-methyl-2 | 0.328 | 0.634 | 0.382 | 1.5e-47 | |
| UNIPROTKB|Q81LV7 | 367 | ispG "4-hydroxy-3-methylbut-2- | 0.338 | 0.667 | 0.359 | 6.2e-45 | |
| TIGR_CMR|BA_4502 | 367 | BA_4502 "gcpE protein" [Bacill | 0.338 | 0.667 | 0.359 | 6.2e-45 |
| TAIR|locus:2175851 HDS "4-hydroxy-3-methylbut-2-enyl diphosphate synthase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2849 (1008.0 bits), Expect = 9.2e-297, P = 9.2e-297
Identities = 563/741 (75%), Positives = 625/741 (84%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSS--SDIA 58
MATG LPA G+K DS +GF KS++ VR+CD R +S RRR +VIRNS+ S +++
Sbjct: 1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQ 60
Query: 59 ELQPASEGS-PLLVPRQKYCESIHKTVRR-KTRTVMVGN-----VAIGSEHPIRVQTMTT 111
S P + +++ + R V +G+ + + + T T
Sbjct: 61 PASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTV 120
Query: 112 NDTKDVAGTVEEVMRI-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164
++ +A +++RI ADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAEC
Sbjct: 121 DEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAEC 180
Query: 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 224
FDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
Query: 225 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284
SLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMY 300
Query: 285 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 344
VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360
Query: 345 NLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSL 404
NLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+SL
Sbjct: 361 NLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISL 420
Query: 405 DQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVI 464
DQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD ARLALKRL+D+SMGVI
Sbjct: 421 DQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGVI 480
Query: 465 TPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATM 524
PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDATM
Sbjct: 481 APLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATM 540
Query: 525 ILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNXXXX 584
ILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT
Sbjct: 541 ILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGL 600
Query: 585 XXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE 644
EAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE
Sbjct: 601 LVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE 660
Query: 645 IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQAT 704
IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG+PGKIDLYVGKTVVKRGIAM +AT
Sbjct: 661 IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEAT 720
Query: 705 DALIQLIKDHGRWAEPP-AEE 724
DALI LIK+HGRW +PP A+E
Sbjct: 721 DALIGLIKEHGRWVDPPVADE 741
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| GENEDB_PFALCIPARUM|PF10_0221 PF10_0221 "GcpE protein" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8IJH7 PF10_0221 "GcpE protein" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P73672 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8DK70 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Thermosynechococcus elongatus BP-1 (taxid:197221)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CHY_1776 CHY_1776 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O33350 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_2594 SPO_2594 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q81LV7 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_4502 BA_4502 "gcpE protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5L7W2 | ISPG_BACFN | 1, ., 1, 7, ., 7, ., 1 | 0.4082 | 0.8093 | 0.9361 | yes | no |
| Q04UL2 | ISPG_LEPBJ | 1, ., 1, 7, ., 7, ., 1 | 0.4185 | 0.8287 | 0.9049 | yes | no |
| A6LGR5 | ISPG_PARD8 | 1, ., 1, 7, ., 7, ., 1 | 0.3953 | 0.8080 | 0.9574 | yes | no |
| Q64N34 | ISPG_BACFR | 1, ., 1, 7, ., 7, ., 1 | 0.4067 | 0.8093 | 0.9361 | yes | no |
| Q04YW2 | ISPG_LEPBL | 1, ., 1, 7, ., 7, ., 1 | 0.4185 | 0.8287 | 0.9049 | yes | no |
| Q6K8J4 | ISPG_ORYSJ | 1, ., 1, 7, ., 7, ., 1 | 0.8174 | 0.9986 | 0.9717 | yes | no |
| F4K0E8 | ISPG_ARATH | 1, ., 1, 7, ., 7, ., 1 | 0.8461 | 0.9986 | 0.9757 | yes | no |
| Q6MD85 | ISPG_PARUW | 1, ., 1, 7, ., 7, ., 1 | 0.5029 | 0.8604 | 0.9525 | yes | no |
| Q72TR2 | ISPG_LEPIC | 1, ., 1, 7, ., 7, ., 1 | 0.4084 | 0.8563 | 0.9351 | yes | no |
| Q8F1H5 | ISPG_LEPIN | 1, ., 1, 7, ., 7, ., 1 | 0.4114 | 0.8563 | 0.9351 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.17.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 1.17.7.1 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 724 | |||
| PLN02925 | 733 | PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-y | 0.0 | |
| PRK02048 | 611 | PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-y | 1e-167 | |
| pfam04551 | 345 | pfam04551, GcpE, GcpE protein | 1e-113 | |
| PRK00694 | 606 | PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-y | 1e-110 | |
| PRK00366 | 360 | PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl di | 2e-97 | |
| COG0821 | 361 | COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4- | 7e-97 | |
| TIGR00612 | 346 | TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-but | 3e-91 | |
| PRK00694 | 606 | PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-y | 5e-57 | |
| pfam04551 | 345 | pfam04551, GcpE, GcpE protein | 3e-47 | |
| COG0821 | 361 | COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4- | 1e-34 | |
| TIGR00612 | 346 | TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-but | 2e-33 | |
| PRK00366 | 360 | PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl di | 4e-25 | |
| COG0155 | 510 | COG0155, CysI, Sulfite reductase, beta subunit (he | 0.004 |
| >gnl|CDD|178513 PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Back alignment and domain information |
|---|
Score = 1474 bits (3819), Expect = 0.0
Identities = 632/741 (85%), Positives = 675/741 (91%), Gaps = 25/741 (3%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
MATG LPA GLK+ DS LGF KS+DFVR+CD R +VIRNS N+ D+ EL
Sbjct: 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRICDVR-------SVSVIRNS-NTGPDLVEL 52
Query: 61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT DTKDV T
Sbjct: 53 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEAT 112
Query: 121 VEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 163
V++VMRIAD ACFEIKN+LVQK YNIPLVADIHFAPSVALRVAE
Sbjct: 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAE 172
Query: 164 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223
CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIEEVF+PLVEKCKKYGRA+RIGTNH
Sbjct: 173 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232
Query: 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283
GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPVVMVQAYRLLVAEM
Sbjct: 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEM 292
Query: 284 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 343
YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 293 YVLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 352
Query: 344 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 403
ANLGM+AA LQQGVAPFEEKHR YFDFQRR+GQLP+QKEGEEVDYR VLHRDGSVLMSVS
Sbjct: 353 ANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEGEEVDYRNVLHRDGSVLMSVS 412
Query: 404 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463
LDQLKAPELLY+SLAAKLVVGMPFKDLATVDSILLRELP VDD +ARLALKRL+D+SMGV
Sbjct: 413 LDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472
Query: 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 523
I PLSEQLTKPLP+AM LVNL+ELS+GA+KLLPEGTRL V+LRGDE YEELEILKD+DAT
Sbjct: 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDAT 532
Query: 524 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 583
M+LHD+PF EDK+ RV AARRLFEYLS N+LNFPVIHHIQFP GIHRDDLVI AG+ GA
Sbjct: 533 MLLHDVPFTEDKVSRVHAARRLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGA 592
Query: 584 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISA 643
LLVDGLGDG+LLEAP QDFDFLR+TSF LLQGCRMRNTKTEYVSCPSCGRTLFDLQE+SA
Sbjct: 593 LLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVSA 652
Query: 644 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 703
EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK VVKRGIAME+A
Sbjct: 653 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVKRGIAMEEA 712
Query: 704 TDALIQLIKDHGRWAEPPAEE 724
TDALIQLIKDHGRW +P EE
Sbjct: 713 TDALIQLIKDHGRWVDPEVEE 733
|
Length = 733 |
| >gnl|CDD|179361 PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218143 pfam04551, GcpE, GcpE protein | Back alignment and domain information |
|---|
| >gnl|CDD|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|218143 pfam04551, GcpE, GcpE protein | Back alignment and domain information |
|---|
| >gnl|CDD|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 724 | |||
| PLN02925 | 733 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 100.0 | |
| PRK00694 | 606 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 100.0 | |
| PRK02048 | 611 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 100.0 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 100.0 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 100.0 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 100.0 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 100.0 | |
| PRK00694 | 606 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 99.82 | |
| PRK02048 | 611 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 99.81 | |
| PLN02925 | 733 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 99.7 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 99.64 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 99.64 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 99.58 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 99.53 | |
| PRK04165 | 450 | acetyl-CoA decarbonylase/synthase complex subunit | 97.59 | |
| PRK13504 | 569 | sulfite reductase subunit beta; Provisional | 97.46 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.35 | |
| PLN00178 | 623 | sulfite reductase | 97.32 | |
| TIGR02042 | 577 | sir ferredoxin-sulfite reductase. monomeric enzyme | 97.19 | |
| TIGR02435 | 390 | CobG precorrin-3B synthase. An iron-sulfur protein | 97.14 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.01 | |
| PF01077 | 157 | NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom | 96.99 | |
| PRK09566 | 513 | nirA ferredoxin-nitrite reductase; Reviewed | 96.96 | |
| TIGR02041 | 541 | CysI sulfite reductase (NADPH) hemoprotein, beta-c | 96.75 | |
| PRK09566 | 513 | nirA ferredoxin-nitrite reductase; Reviewed | 96.68 | |
| COG0155 | 510 | CysI Sulfite reductase, beta subunit (hemoprotein) | 96.62 | |
| PRK09567 | 593 | nirA ferredoxin-nitrite reductase; Reviewed | 96.4 | |
| PLN02431 | 587 | ferredoxin--nitrite reductase | 96.36 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 96.27 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 95.92 | |
| PRK00979 | 308 | tetrahydromethanopterin S-methyltransferase subuni | 95.68 | |
| PRK13504 | 569 | sulfite reductase subunit beta; Provisional | 95.55 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.54 | |
| TIGR02041 | 541 | CysI sulfite reductase (NADPH) hemoprotein, beta-c | 95.5 | |
| TIGR00381 | 389 | cdhD CO dehydrogenase/acetyl-CoA synthase, delta s | 95.25 | |
| TIGR02435 | 390 | CobG precorrin-3B synthase. An iron-sulfur protein | 94.89 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 94.88 | |
| PLN02431 | 587 | ferredoxin--nitrite reductase | 94.38 | |
| TIGR02066 | 341 | dsrB sulfite reductase, dissimilatory-type beta su | 94.31 | |
| TIGR02912 | 314 | sulfite_red_C sulfite reductase, subunit C. Member | 93.87 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 93.75 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 93.06 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 93.0 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 92.88 | |
| PRK09567 | 593 | nirA ferredoxin-nitrite reductase; Reviewed | 91.4 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 89.4 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 88.77 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 88.49 | |
| TIGR02082 | 1178 | metH 5-methyltetrahydrofolate--homocysteine methyl | 87.83 | |
| COG2221 | 317 | DsrA Dissimilatory sulfite reductase (desulfovirid | 86.79 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 85.36 | |
| TIGR02064 | 402 | dsrA sulfite reductase, dissimilatory-type alpha s | 85.05 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 83.71 | |
| PF13913 | 25 | zf-C2HC_2: zinc-finger of a C2HC-type | 82.32 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 81.15 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 80.71 | |
| PLN00178 | 623 | sulfite reductase | 80.03 |
| >PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-204 Score=1685.90 Aligned_cols=716 Identities=88% Similarity=1.362 Sum_probs=681.4
Q ss_pred CCCCCCCcccCCcccccCCCcccccccceeecceeeeccccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 004907 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI 80 (724)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 80 (724)
||+|.+|+++.+++.+..+++|.++++|.+. +++++.++.++. ++.+++.++++++++++++.|.++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 72 (733)
T PLN02925 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI 72 (733)
T ss_pred CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence 8999999999999999999999999999665 333455555554 66788999999999999999999999999
Q ss_pred cccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCC
Q 004907 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNY 143 (724)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~ 143 (724)
|+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++ +|+.|+++|+++++
T Consensus 73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 152 (733)
T PLN02925 73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY 152 (733)
T ss_pred hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 144 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
++||||||||||++|++|++++|||||||||||+++|+|+.++|||+||++||++|+++|.+||++||++|+||||||||
T Consensus 153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~ 232 (733)
T PLN02925 153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232 (733)
T ss_pred CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 303 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~ 303 (724)
|||++|++++||+||+||||||+||+++||++||+|||||||||||++||+|||+|+++|+++|++|||||||||||+++
T Consensus 233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e 312 (733)
T PLN02925 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE 312 (733)
T ss_pred cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccC
Q 004907 304 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 383 (724)
Q Consensus 304 ~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~~g 383 (724)
+|+||||+|||+||.||||||||||||+||++||+||++|+++......++..++.|++..+||++|.||.+..+...+|
T Consensus 313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg 392 (733)
T PLN02925 313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG 392 (733)
T ss_pred CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence 99999999999999999999999999999999999999999987774334445788999999999999999999989999
Q ss_pred CccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccc
Q 004907 384 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463 (724)
Q Consensus 384 ~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 463 (724)
+.+|++.++|++++|++.+++++|+.++++|+.+++++.+|+++++.+++|+||++++|+..+.+.+++|++++|+++|+
T Consensus 393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (733)
T PLN02925 393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472 (733)
T ss_pred ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999988878888899999999999999
Q ss_pred cccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHH
Q 004907 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 543 (724)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R 543 (724)
+.|.++....|+++++++++.+++....+...++..+|+++..+++++|.+..++..+.+++++..|+..++.++|+++|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R 552 (733)
T PLN02925 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR 552 (733)
T ss_pred ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence 98866666778899999999988876666677778899999999999999999999999999999444458899999999
Q ss_pred HHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcc
Q 004907 544 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 623 (724)
Q Consensus 544 ~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kt 623 (724)
+||+.|+++|+++|||||..|++..+.++.+|+||+++|+||+|||||||||+.++.+..+.+.++|+|||++|+|++||
T Consensus 553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kt 632 (733)
T PLN02925 553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKT 632 (733)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999768899999999999999999999999999998889999999999999999999999
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHH
Q 004907 624 EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 703 (724)
Q Consensus 624 e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeea 703 (724)
|||||||||||+||||+++++|+++|+||||+||||||||||||||||||||||||++||||+||+|||||+||||+|+|
T Consensus 633 e~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYvgKecV~~nIpeeeA 712 (733)
T PLN02925 633 EYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVKRGIAMEEA 712 (733)
T ss_pred eEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEecceehhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCC
Q 004907 704 TDALIQLIKDHGRWAEPPAEE 724 (724)
Q Consensus 704 vd~Li~lIk~~g~W~dp~~~~ 724 (724)
||+||+|||+||+|+||+++|
T Consensus 713 vd~LIeLIKe~G~Wvdp~~~~ 733 (733)
T PLN02925 713 TDALIQLIKDHGRWVDPEVEE 733 (733)
T ss_pred HHHHHHHHHHcCcccCCCCCC
Confidence 999999999999999998765
|
|
| >PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated | Back alignment and domain information |
|---|
| >PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated | Back alignment and domain information |
|---|
| >PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Back alignment and domain information |
|---|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional | Back alignment and domain information |
|---|
| >PRK13504 sulfite reductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
| >PLN00178 sulfite reductase | Back alignment and domain information |
|---|
| >TIGR02042 sir ferredoxin-sulfite reductase | Back alignment and domain information |
|---|
| >TIGR02435 CobG precorrin-3B synthase | Back alignment and domain information |
|---|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
| >PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively | Back alignment and domain information |
|---|
| >PRK09566 nirA ferredoxin-nitrite reductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component | Back alignment and domain information |
|---|
| >PRK09566 nirA ferredoxin-nitrite reductase; Reviewed | Back alignment and domain information |
|---|
| >COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09567 nirA ferredoxin-nitrite reductase; Reviewed | Back alignment and domain information |
|---|
| >PLN02431 ferredoxin--nitrite reductase | Back alignment and domain information |
|---|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
| >PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional | Back alignment and domain information |
|---|
| >PRK13504 sulfite reductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
| >TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component | Back alignment and domain information |
|---|
| >TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit | Back alignment and domain information |
|---|
| >TIGR02435 CobG precorrin-3B synthase | Back alignment and domain information |
|---|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
| >PLN02431 ferredoxin--nitrite reductase | Back alignment and domain information |
|---|
| >TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit | Back alignment and domain information |
|---|
| >TIGR02912 sulfite_red_C sulfite reductase, subunit C | Back alignment and domain information |
|---|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
| >PRK09567 nirA ferredoxin-nitrite reductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit | Back alignment and domain information |
|---|
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PF13913 zf-C2HC_2: zinc-finger of a C2HC-type | Back alignment and domain information |
|---|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
| >PLN00178 sulfite reductase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 724 | ||||
| 3noy_A | 366 | Crystal Structure Of Ispg (Gcpe) Length = 366 | 2e-37 | ||
| 3noy_A | 366 | Crystal Structure Of Ispg (Gcpe) Length = 366 | 7e-10 | ||
| 2y0f_A | 406 | Structure Of Gcpe (Ispg) From Thermus Thermophilus | 3e-28 | ||
| 2y0f_A | 406 | Structure Of Gcpe (Ispg) From Thermus Thermophilus | 3e-07 |
| >pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe) Length = 366 | Back alignment and structure |
|
| >pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe) Length = 366 | Back alignment and structure |
| >pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27 Length = 406 | Back alignment and structure |
| >pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27 Length = 406 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Length = 366 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 7e-93
Identities = 106/280 (37%), Positives = 150/280 (53%), Gaps = 42/280 (15%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEI---------- 134
+RKTR + VGNV IG + PI VQ+MT+ T DV T+ ++ R+ +A EI
Sbjct: 13 KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED 72
Query: 135 KNSLVQ--KNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDE 191
+L + K +P++ADIHFAPS A E IR+NPGN
Sbjct: 73 VEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKE------------- 119
Query: 192 YQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFAR 250
+ + E+ VE+ K+ G AVRIG N GSL ++ YG S + ESA ++
Sbjct: 120 -----EIVREI----VEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSE 170
Query: 251 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310
K F N+ S+K S+ + V+A + AE D PLH+G+TEAG G G +KS+
Sbjct: 171 KFEKWGFTNYKVSIKGSDVLQNVRANLIF-AERT----DVPLHIGITEAGMGTKGIIKSS 225
Query: 311 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 349
+GIG LL G+GDT+RVSLT+ P E++ L +LG+R
Sbjct: 226 VGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLR 265
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Length = 366 | Back alignment and structure |
|---|
| >2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non-mevalonate PATH; 2.50A {Thermus thermophilus} Length = 406 | Back alignment and structure |
|---|
| >2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non-mevalonate PATH; 2.50A {Thermus thermophilus} Length = 406 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 724 | |||
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 100.0 | |
| 4g9p_A | 406 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 100.0 | |
| 4g9p_A | 406 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 99.6 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 99.54 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 98.84 | |
| 4g38_A | 570 | SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote | 98.47 | |
| 1aop_A | 497 | Sirhp, sulfite reductase hemoprotein; oxidoreducta | 98.2 | |
| 1zj8_A | 566 | Probable ferredoxin-dependent nitrite reductase N; | 97.98 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 97.44 | |
| 2akj_A | 608 | Ferredoxin--nitrite reductase, chloroplast; X-RAY | 96.88 | |
| 3b0g_A | 591 | NII3, nitrite reductase; siroheme, Fe4S4 binding p | 96.65 | |
| 4djd_C | 446 | C/Fe-SP, corrinoid/iron-sulfur protein large subun | 96.18 | |
| 2h9a_A | 445 | Carbon monoxide dehydrogenase corrinoid/iron- sulf | 95.9 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.11 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 94.77 | |
| 1aop_A | 497 | Sirhp, sulfite reductase hemoprotein; oxidoreducta | 93.69 | |
| 1zj8_A | 566 | Probable ferredoxin-dependent nitrite reductase N; | 93.42 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.24 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.18 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 92.76 | |
| 3b0g_A | 591 | NII3, nitrite reductase; siroheme, Fe4S4 binding p | 92.51 | |
| 2akj_A | 608 | Ferredoxin--nitrite reductase, chloroplast; X-RAY | 92.34 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 91.95 | |
| 4g38_A | 570 | SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote | 91.81 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 91.71 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 90.36 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 90.15 | |
| 3or1_A | 437 | Sulfite reductase alpha; dissimilatory sulfite red | 89.79 | |
| 3mm5_A | 418 | Sulfite reductase, dissimilatory-type subunit ALP; | 89.31 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 89.26 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 88.7 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 88.56 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 87.81 | |
| 3mm5_B | 366 | Sulfite reductase, dissimilatory-type subunit BET; | 87.63 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 86.81 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 86.38 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 86.23 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 85.92 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 84.93 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 84.71 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 84.52 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 84.3 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 84.23 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 83.67 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 83.58 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 83.49 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 83.46 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 83.34 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 82.52 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 81.96 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 81.58 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 81.57 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 81.28 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 81.18 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 81.04 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 80.86 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 80.31 |
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-127 Score=1012.56 Aligned_cols=331 Identities=39% Similarity=0.652 Sum_probs=316.1
Q ss_pred cccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCC
Q 004907 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNY 143 (724)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~ 143 (724)
.+++||+||+|+||+|+|||++||+|||||||+|.|+++|++||.+|++ +++.|++ ++
T Consensus 9 ~~~~rr~tr~v~VG~v~IGG~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~-----~~ 83 (366)
T 3noy_A 9 SMIQKRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVK-----KS 83 (366)
T ss_dssp -CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHH-----HC
T ss_pred cceeeccceEEEECCEEEcCCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHh-----cC
Confidence 4678999999999999999999999999999999999999999999999 6667766 59
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++||||||||||++|++|+++ +||+||||||||+++ +|++||++||++|+|||||||
T Consensus 84 ~vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~~~----------------------~~~~vv~~ak~~~~piRIGvN 141 (366)
T 3noy_A 84 PMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEE----------------------IVREIVEEAKRRGVAVRIGVN 141 (366)
T ss_dssp SSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHH----------------------HHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCCeEEECCcccCchh----------------------HHHHHHHHHHHcCCCEEEecC
Confidence 999999999999999999999 999999999999743 589999999999999999999
Q ss_pred cCCCchHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 223 HGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 223 ~GSL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
||||+++++++|| +||++|||||++++++||++||+||+||+|+|||++||+|||+|+++ +||||||||||||+
T Consensus 142 ~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v~~~i~ayr~la~~-----~dyPLHlGvTEAG~ 216 (366)
T 3noy_A 142 SGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDVLQNVRANLIFAER-----TDVPLHIGITEAGM 216 (366)
T ss_dssp GGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHH-----CCCCEEECCSSCCS
T ss_pred CcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCChHHHHHHHHHHHhc-----cCCCEEEccCCCCC
Confidence 9999999999999 79999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccc
Q 004907 302 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 381 (724)
Q Consensus 302 ~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~ 381 (724)
+.+|+||||+|||+||.||||||||||||+||++||++|+
T Consensus 217 ~~~G~ikSsigiG~LL~dGIGDTIRVSLt~~p~~Ev~va~---------------------------------------- 256 (366)
T 3noy_A 217 GTKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAY---------------------------------------- 256 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEECCCCSSCHHHHHHHHH----------------------------------------
T ss_pred CcceeeehHHHHHHHHHhcccceEEEeCCCCcHHHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999998887763
Q ss_pred cCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccc
Q 004907 382 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISM 461 (724)
Q Consensus 382 ~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~ 461 (724)
T Consensus 257 -------------------------------------------------------------------------------- 256 (366)
T 3noy_A 257 -------------------------------------------------------------------------------- 256 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHH
Q 004907 462 GVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQA 541 (724)
Q Consensus 462 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~ 541 (724)
T Consensus 257 -------------------------------------------------------------------------------- 256 (366)
T 3noy_A 257 -------------------------------------------------------------------------------- 256 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCC
Q 004907 542 ARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNT 621 (724)
Q Consensus 542 ~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~ 621 (724)
+|||++|+|.+
T Consensus 257 ---------------------------------------------------------------------~ILqslglR~~ 267 (366)
T 3noy_A 257 ---------------------------------------------------------------------EILKSLGLRRR 267 (366)
T ss_dssp ---------------------------------------------------------------------HHHHHTTSCCS
T ss_pred ---------------------------------------------------------------------HHHHhcCCCcC
Confidence 34777899999
Q ss_pred cceeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCCh
Q 004907 622 KTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAM 700 (724)
Q Consensus 622 kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipe 700 (724)
+++||||||||||+||||+++++|+++|.|+| |+|||||||||||||||+||||||+|| +|++.||++|++++ ++|+
T Consensus 268 g~~~ISCPtCGRt~~dl~~~~~~ie~~l~~~~~~lkVAVMGCvVNGPGEa~~ADiGiagg-~~~~~lf~~Ge~v~-~v~~ 345 (366)
T 3noy_A 268 GVEIVACPTCGRIEVDLPKVVKEVQEKLSGVKTPLKVAVMGCVVNAIGEAREADIGLACG-RGFAWLFKHGKPIK-KVDE 345 (366)
T ss_dssp SCEEEECCCCTTCCSCHHHHHHHHHHHTTTCCSCCEEEEESSSHHHHHHTTTCSEEEEEC-SSEEEEEETTEEEE-EEES
T ss_pred CCEEEECCCCCCccccHHHHHHHHHHHHhCCCCCCEEEEEcccccCCchhhhCCEeEecC-CCceEEEECCEEee-ecCH
Confidence 99999999999999999999999999999999 999999999999999999999999996 89999999999999 5999
Q ss_pred hHHHHHHHHHHHhc
Q 004907 701 EQATDALIQLIKDH 714 (724)
Q Consensus 701 eeavd~Li~lIk~~ 714 (724)
++++|+|+++|++.
T Consensus 346 ~~~~~~l~~~I~~~ 359 (366)
T 3noy_A 346 SEMVDELLKEIQNM 359 (366)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
|
| >4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* | Back alignment and structure |
|---|
| >4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* | Back alignment and structure |
|---|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* | Back alignment and structure |
|---|
| >1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* | Back alignment and structure |
|---|
| >1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A* | Back alignment and structure |
|---|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
| >2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 | Back alignment and structure |
|---|
| >3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A* | Back alignment and structure |
|---|
| >4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C* | Back alignment and structure |
|---|
| >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A* | Back alignment and structure |
|---|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* | Back alignment and structure |
|---|
| >1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A* | Back alignment and structure |
|---|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
| >3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A* | Back alignment and structure |
|---|
| >2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 | Back alignment and structure |
|---|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* | Back alignment and structure |
|---|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
| >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A* | Back alignment and structure |
|---|
| >3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* | Back alignment and structure |
|---|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* | Back alignment and structure |
|---|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 724 | ||||
| d1aopa4 | 145 | d.134.1.1 (A:426-570) Sulfite reductase hemoprotei | 5e-04 |
| >d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitrite and sulphite reductase 4Fe-4S domain-like superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like family: Nitrite and sulphite reductase 4Fe-4S domain-like domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (90), Expect = 5e-04
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 23/116 (19%)
Query: 626 VSCPS---CGRTLFDLQEISAEIREKTSHL--------PGVSIAIMGCIVNGPGEMADAD 674
++C S C + + + + +L + + + GC NG G A+
Sbjct: 7 MACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCP-NGCGRAMLAE 65
Query: 675 FGYVGGAPGKIDLYVGKTVVKRGIA-----------MEQATDALIQLIKDHGRWAE 719
G VG APG+ +L++G + I + + D LI E
Sbjct: 66 VGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGE 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 724 | |||
| d1aopa4 | 145 | Sulfite reductase hemoprotein (SiRHP), domains 2 a | 97.69 | |
| d2akja3 | 126 | Ferredoxin--nitrite reductase, NIR {Spinach (Spina | 96.96 | |
| d2v4jb3 | 177 | Dissimilatory sulfite reductase subunit beta, DsrB | 96.94 | |
| d3c7ba3 | 185 | Dissimilatory sulfite reductase subunit alpha, Dsr | 96.89 | |
| d1zj8a4 | 165 | Sulfite reductase NirA {Mycobacterium tuberculosis | 96.88 | |
| d2akja4 | 171 | Ferredoxin--nitrite reductase, NIR {Spinach (Spina | 96.76 | |
| d1zj8a3 | 149 | Sulfite reductase NirA {Mycobacterium tuberculosis | 96.66 | |
| d2v4ja3 | 189 | Dissimilatory sulfite reductase subunit alpha, Dsr | 96.63 | |
| d3c7bb3 | 179 | Dissimilatory sulfite reductase subunit beta, DsrB | 93.97 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 92.67 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 92.08 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 91.35 | |
| d1aopa3 | 197 | Sulfite reductase hemoprotein (SiRHP), domains 2 a | 91.35 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 89.89 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 89.41 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 88.06 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 87.84 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 85.29 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 83.67 |
| >d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitrite and sulphite reductase 4Fe-4S domain-like superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like family: Nitrite and sulphite reductase 4Fe-4S domain-like domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1.8e-05 Score=72.14 Aligned_cols=88 Identities=26% Similarity=0.480 Sum_probs=66.2
Q ss_pred eeecCC---CCccccccH----HHHHHHHHHHhc-C--CC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce
Q 004907 624 EYVSCP---SCGRTLFDL----QEISAEIREKTS-H--LP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT 692 (724)
Q Consensus 624 e~ISCP---sCGRTlfDL----q~~~~~Ik~~t~-h--Lk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke 692 (724)
..|||| .|.--+.|= .++.+++.+... | .+ ++||+|-|| .|+=|+.--+|+|++|..++...+|.|+.
T Consensus 5 ~~vAC~G~~~C~~gi~dtk~~a~~l~~~l~~~~~~~~~~~~~~kI~vSGC-~n~C~~~~~~DIG~~g~~~~~~~i~~GG~ 83 (145)
T d1aopa4 5 NSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGC-PNGCGRAMLAEVGLVGKAPGRYNLHLGGN 83 (145)
T ss_dssp TEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTCTTCCCCEEEESS-TTCTTCGGGSSEEEEEEETTEEEEEECCC
T ss_pred ceeeCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCceEEEEecC-CCCCccceecceeEEEecCCceEEEecCC
Confidence 468995 688766664 455555555432 2 23 699999999 59999999999999998888899998753
Q ss_pred --------eeeecCChhHHHHHHHHHHH
Q 004907 693 --------VVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 693 --------~V~~~Ipeeeavd~Li~lIk 712 (724)
.+...||++|+.+.+..+|+
T Consensus 84 ~~~~r~g~~~~~~v~~~ev~~~v~~il~ 111 (145)
T d1aopa4 84 RIGTRIPRMYKENITEPEILASLDELIG 111 (145)
T ss_dssp TTSCSCCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCcccceeeccCCHHHHHHHHHHHHH
Confidence 45667999998887666664
|
| >d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
| >d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
| >d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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