Citrus Sinensis ID: 004917

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKNQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
cccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHcHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccc
cccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccHHHHHcccccccHcccccccccccccccccccccccccHcHccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHccHHHHcccccccccHHccccccccccccHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccHHcHHEccccc
MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKNQRDAAENEEENVElstrrnsengdiedmsleaifsedesdedegdvdvddsgsdgylsedsnclpiaeseihlgengaagkpsaqNQEILLELENKKKKLSrlkakdpgfskFLESHDKGLksfrnenaysdedersddgmqsmdedgphlYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHygaestgilgsgsgapmldcETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQdvasgfssdcFDLCLIKMYKAFIghckfaepaLFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHcihdydlqpLLYIIIQIINgmatlfpgprylplrcKCIEWLnhlssssgifipVTSLMLDVLEYKvskevgkpgkdfnfssavklpkhwlksrnfrEDCVFSAIELLSAHFAQWSyhisfpelatiplihlrkfqeksdVESLRRVVKRFIDVVEQNIEFVKKkrdevafspndqQSVEAFLQLEkcsgntpftqYYRSVMEKAASRSLIMNENKSFLEQKKQkrkrgqnivdvrangekvpekskvdqavsvkdgk
mgklgkkarkfakknlqsvlkrkrkikstfkkkasknqrdaaeneeenvelstrrnsengdiedMSLEAIFSedesdedegdvdVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKlsrlkakdpgfskfleshdkglksfrnenaysdedeRSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktvrPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRssnkakvsinNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEvgkpgkdfnfssavklpkhwlksRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRkfqeksdvesLRRVVKRFIDVVEQNIEFVkkkrdevafspNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSfleqkkqkrkrgqnivdvrangekvpekskvdqavsvkdgk
MgklgkkarkfakkNLQSVLkrkrkikstfkkkaskNQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFsedesdedegdvdvddsgsdgYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQeillelenkkkklsrlkakDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHdydlqpllyiiiqiiNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
******************************************************************************************************************************************************************************************HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKR************VEAFLQLEKCSGNTPFTQYYRSV*********************************************************
****GKKARKFA**************************************************************************************************************************************FSKFLE***********************************************NSWCH*VK**HNASAFISLLNAYRAACH*****************LDCETFCKILMFVLREADDVFREM**********************TVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD**********************VKL********NFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVK***************VEAFLQLEKCSGNTPFTQYYRSV*********************************************************
MGKLGKKARKFAKKNLQSVLKRKRK******************************NSENGDIEDMSLEAIFS***************SGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAY***********QSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFL**********QNIVDVRANGE******************
*****KKARKFAKKNLQSVLKRKRKIKSTFKK***************************************************************************************************NKKKKLSRLKAKDPGFSKFLESHDKGLKSFR****************************NKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFL***K*K*********************************
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MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKxxxxxxxxxxxxxxxxxxxxxTRRNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQxxxxxxxxxxxxxxxxxxxxxDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query724 2.2.26 [Sep-21-2011]
Q9ZPV5764 Nucleolar complex protein no no 0.747 0.708 0.360 1e-108
Q8LNU5 757 Nucleolar complex protein no no 0.733 0.701 0.350 1e-92
Q3SYU1746 Nucleolar complex protein yes no 0.788 0.765 0.262 5e-56
Q9Y3T9749 Nucleolar complex protein yes no 0.740 0.715 0.271 3e-54
Q9WV70747 Nucleolar complex protein yes no 0.727 0.705 0.267 5e-54
P39744710 Nucleolar complex protein yes no 0.754 0.769 0.247 2e-42
Q9P7G0707 Uncharacterized NOC2 fami yes no 0.788 0.807 0.232 5e-42
Q9VIF0766 Nucleolar complex protein yes no 0.668 0.631 0.240 9e-41
O17580715 Nucleolar complex protein yes no 0.359 0.363 0.253 8e-19
A8WTM7719 Nucleolar complex protein N/A no 0.346 0.349 0.260 1e-18
>sp|Q9ZPV5|NOC2L_ARATH Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2 Back     alignment and function desciption
 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 327/571 (57%), Gaps = 30/571 (5%)

Query: 137 LSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDG----------P 186
           L RL+ KDP F ++++ HD  L  F       D D   D  ++  +++G           
Sbjct: 63  LKRLQEKDPDFFQYMKEHDAELLKFDATEIEDDADVEPDTDLEDTEKEGDDEATKMEIAK 122

Query: 187 HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLD 246
            +++ K +T+S +++W   ++++       S+L AYR ACHYG ++       +   ++ 
Sbjct: 123 KVHVQKTITASMVDAWSKSIEDEAKLGGVRSILRAYRTACHYGDDTGD--DQSTKFSVMS 180

Query: 247 CETFCKILMFVLREADDVFREMLGISSNCK--RDTILGLKNNSKWKTVRPLIKSYLRSTL 304
            E F KI+++VL E D + R++L    + +  ++TIL L N   WK    L+KSYL ++L
Sbjct: 181 SEVFNKIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWKNYNHLVKSYLGNSL 240

Query: 305 FMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQ 364
            +LNQ TD+E++ F+L RL+ S VF AAFP L+R+ IK+A+H W TG   +   S L L+
Sbjct: 241 HVLNQMTDTEMITFTLRRLKHSSVFLAAFPSLLRKYIKVALHFWGTGSGALPVVSLLFLR 300

Query: 365 DVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAK 424
           D+     SDC D C   MYKA++ +C+F      KH+ FL N F+EL   D+  +   A 
Sbjct: 301 DLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAF 360

Query: 425 VSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQI 484
           V I  L+ IL+  L TK KEA +K+  W++ +C++LW   +       +L+P+ Y + QI
Sbjct: 361 VFIRQLAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQI 420

Query: 485 INGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKP---- 540
           I G+A L P  RY PLR +C+  LN L++++G FIPV+ L++D+LE    KE+ +P    
Sbjct: 421 ITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEM---KELNRPPTGG 477

Query: 541 -GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLR 599
            GK  +  + +K+ K  +K+R F+E CV++ +E L  H +QWS  ++F EL+ IP I LR
Sbjct: 478 VGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLR 537

Query: 600 KFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTP 659
            F + +  E  R+ +K+ I  +E N EFV KKR  + F PND  + E+FL+ EK +G TP
Sbjct: 538 SFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTP 596

Query: 660 FTQYYRSVMEKAASRS-------LIMNENKS 683
             QY   + ++A  R+       +I+ EN +
Sbjct: 597 LLQYAEIIRQRAQQRNESLVESDVIVGENSA 627

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LNU5|NOC2L_ORYSJ Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=2 SV=1 Back     alignment and function description
>sp|Q3SYU1|NOC2L_BOVIN Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1 Back     alignment and function description
>sp|Q9Y3T9|NOC2L_HUMAN Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4 Back     alignment and function description
>sp|Q9WV70|NOC2L_MOUSE Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2 Back     alignment and function description
>sp|P39744|NOC2_YEAST Nucleolar complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9P7G0|YKY4_SCHPO Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1142.04 PE=1 SV=1 Back     alignment and function description
>sp|Q9VIF0|NOC2L_DROME Nucleolar complex protein 2 homolog OS=Drosophila melanogaster GN=CG9246 PE=1 SV=1 Back     alignment and function description
>sp|O17580|NOC2L_CAEEL Nucleolar complex protein 2 homolog OS=Caenorhabditis elegans GN=pro-2 PE=2 SV=2 Back     alignment and function description
>sp|A8WTM7|NOC2L_CAEBR Nucleolar complex protein 2 homolog OS=Caenorhabditis briggsae GN=pro-2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query724
225449124704 PREDICTED: nucleolar complex protein 2 h 0.959 0.987 0.652 0.0
296086056710 unnamed protein product [Vitis vinifera] 0.930 0.949 0.670 0.0
449497671722 PREDICTED: nucleolar complex protein 2 h 0.973 0.976 0.563 0.0
356565737696 PREDICTED: nucleolar complex protein 2 h 0.922 0.959 0.583 0.0
224100835624 predicted protein [Populus trichocarpa] 0.696 0.807 0.695 0.0
255577677561 conserved hypothetical protein [Ricinus 0.733 0.946 0.658 0.0
449464502634 PREDICTED: nucleolar complex protein 2 h 0.773 0.883 0.569 0.0
297816846601 hypothetical protein ARALYDRAFT_485977 [ 0.703 0.846 0.541 1e-164
7076794606 putative protein [Arabidopsis thaliana] 0.701 0.838 0.539 1e-162
18410294594 Noc2p family protein [Arabidopsis thalia 0.690 0.841 0.545 1e-162
>gi|225449124|ref|XP_002274888.1| PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera] Back     alignment and taxonomy information
 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/714 (65%), Positives = 558/714 (78%), Gaps = 19/714 (2%)

Query: 1   MGKLGKKARKFAKKNLQSVLKRKRKIKSTFKKKASKNQRDAAENE-EENVELSTRRNSEN 59
           MGKLGKKARKFAKKNLQSVLKRKRK+KS FKKK+S+ ++DAA+++ ++   L   RN E 
Sbjct: 1   MGKLGKKARKFAKKNLQSVLKRKRKLKSMFKKKSSRGEQDAADDQLQDETNLLNGRNLEG 60

Query: 60  GDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIH--LGENGAAG 117
            DIE  SL++IFSED+SD     V  DDS SDG+LSEDS+C+ + ESE    L +NG   
Sbjct: 61  EDIEGTSLDSIFSEDDSD-----VAGDDSDSDGFLSEDSSCMYVPESENGNLLEDNGGGS 115

Query: 118 KPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDG 177
               QN+EI LEL  KKKKL RLK KDP FSKFLES+ KGL+  RN+  YSDEDE SD  
Sbjct: 116 ALLVQNREIHLELAKKKKKLDRLKEKDPEFSKFLESYHKGLEELRNDENYSDEDEESDLN 175

Query: 178 MQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGIL- 236
           MQSM+ED  +L + KLLT+SAI+SWC +V +QH+ SA  SLLN YRAACHYG  ST  L 
Sbjct: 176 MQSMNEDSLNLKIAKLLTNSAIDSWCKIVGDQHSISALPSLLNGYRAACHYGTSSTSTLD 235

Query: 237 GSGSGAPMLDCETFCKILMFVLREADDVFREMLGIS-SNCKRDTILGLKNNSKWKTVRPL 295
            + S   + + ETFC ILMF+L EAD++FR +LGIS S+C+++TIL LKN +KWK+++P+
Sbjct: 236 AAASSYSIQNSETFCNILMFMLCEADNIFRGLLGISCSSCRKETILDLKNTAKWKSLKPM 295

Query: 296 IKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETV 355
           +KSYLRSTLF+LNQ TDSEILAFSL RLR SI+FF  FP L+RRLIKIAVHLWATG  TV
Sbjct: 296 VKSYLRSTLFLLNQVTDSEILAFSLTRLRASIIFFTTFPSLLRRLIKIAVHLWATGGGTV 355

Query: 356 SFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQD 415
           S  +FLI+QDVA  FSSDCFD CLIK YKAFI H KF +P  +KH+QFLRNSFVELCS D
Sbjct: 356 SSCTFLIIQDVALIFSSDCFDTCLIKTYKAFIAHSKFVKPGFYKHIQFLRNSFVELCSLD 415

Query: 416 LLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQ 475
           + +SS KA VS+  L++ILQ GL+T+KKEA++KICSWQY NCIDLWV +IS  I D  LQ
Sbjct: 416 VEKSSKKALVSMQQLAKILQQGLRTRKKEAIEKICSWQYTNCIDLWVMFISANISDNSLQ 475

Query: 476 PLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSK 535
            LL++IIQIING+A LFP PRYLPLR K I+WLNHLSSSSG+FIPV SL+LD LEYK+ K
Sbjct: 476 HLLFMIIQIINGVAYLFPAPRYLPLRLKTIQWLNHLSSSSGVFIPVASLVLDTLEYKIGK 535

Query: 536 EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPL 595
           E G+PGK FN SSA+KLPKH LKSR F+E+C+ SAIELL+ HF QWSYHISFPELA+IPL
Sbjct: 536 ESGQPGKAFNMSSAIKLPKHCLKSRKFQEECILSAIELLTVHFGQWSYHISFPELASIPL 595

Query: 596 IHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEK-C 654
           I LRKF E + +E+LR VVKR ID VEQN+EFV+KKRDEVAFSPNDQQSVE+FLQLEK  
Sbjct: 596 IRLRKFHEIT-IENLRHVVKRLIDQVEQNVEFVQKKRDEVAFSPNDQQSVESFLQLEKGG 654

Query: 655 SGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKV 708
            GN PFTQYY S+MEKAASRSL+MNE        ++ RK G+    V   GE++
Sbjct: 655 GGNAPFTQYYNSIMEKAASRSLLMNEK---FPGSEKTRKMGK----VHDKGERL 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086056|emb|CBI31497.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449497671|ref|XP_004160470.1| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565737|ref|XP_003551094.1| PREDICTED: nucleolar complex protein 2 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224100835|ref|XP_002312032.1| predicted protein [Populus trichocarpa] gi|222851852|gb|EEE89399.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577677|ref|XP_002529715.1| conserved hypothetical protein [Ricinus communis] gi|223530817|gb|EEF32681.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449464502|ref|XP_004149968.1| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816846|ref|XP_002876306.1| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata] gi|297322144|gb|EFH52565.1| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7076794|emb|CAB75909.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18410294|ref|NP_567023.1| Noc2p family protein [Arabidopsis thaliana] gi|110741873|dbj|BAE98878.1| hypothetical protein [Arabidopsis thaliana] gi|332645873|gb|AEE79394.1| Noc2p family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query724
TAIR|locus:2100006594 RBL "REBELOTE" [Arabidopsis th 0.690 0.841 0.523 1.1e-142
UNIPROTKB|Q3SYU1746 NOC2L "Nucleolar complex prote 0.766 0.743 0.255 1.2e-49
DICTYBASE|DDB_G0284383802 DDB_G0284383 "Nucleolar comple 0.545 0.492 0.280 3.3e-49
UNIPROTKB|Q9Y3T9749 NOC2L "Nucleolar complex prote 0.752 0.727 0.258 1.6e-48
UNIPROTKB|F1NV71764 NOC2L "Uncharacterized protein 0.754 0.714 0.250 9.1e-48
UNIPROTKB|E9PTF3644 Noc2l "Protein Noc2l" [Rattus 0.719 0.809 0.253 4e-42
RGD|1309387644 Noc2l "nucleolar complex assoc 0.719 0.809 0.253 8.4e-42
ASPGD|ASPL0000053778774 AN0946 [Emericella nidulans (t 0.769 0.719 0.245 2.5e-41
MGI|MGI:1931051747 Noc2l "nucleolar complex assoc 0.643 0.623 0.252 7.6e-41
UNIPROTKB|G4MV71799 MGG_08867 "Nucleolar complex p 0.734 0.665 0.240 6.5e-37
TAIR|locus:2100006 RBL "REBELOTE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 1.1e-142, Sum P(2) = 1.1e-142
 Identities = 264/504 (52%), Positives = 358/504 (71%)

Query:   168 SDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACH 227
             SD D   D+ +   D D   +   K+L+ S + + C +V ++    A + LLN YRAAC 
Sbjct:    86 SDSDGYLDELVNETDSD---IMKCKVLSRSFLATCCDMVDKEQYVPALVRLLNWYRAACQ 142

Query:   228 YGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNS 287
             YG E +GI        + D ETF K+++FVL++AD  FR +LG+S +  ++ IL LKNN 
Sbjct:   143 YGHEPSGIARPNIYYDIEDSETFAKVIIFVLQKADHTFRSILGLSDSSTKEKILKLKNNP 202

Query:   288 KWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL 347
             KW +++PL+KS+ RSTL ++ QA D EI++F+L +LR SIVF AAFP L+++LIKI+VHL
Sbjct:   203 KWDSLKPLVKSFFRSTLHLVKQAGDLEIISFTLTQLRVSIVFLAAFPDLLKKLIKISVHL 262

Query:   348 WATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNS 407
             W TGEET+S  +FLIL+D++  F+S+CFD CLI MYKAF+  C   + A  +   FLR+S
Sbjct:   263 WVTGEETISQQAFLILKDISMVFNSECFDSCLINMYKAFLHDCDIPK-ANSEQRPFLRDS 321

Query:   408 FVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISH 467
              VELCSQD+ +S  KA VSI  L+++L++ L TK KEAV+KI S +Y NC+DLWV +IS 
Sbjct:   322 LVELCSQDVQKSYTKASVSITQLAKLLKMALATKNKEAVEKIHSGEYINCVDLWVNFISA 381

Query:   468 CIHXXXXXXXXXXXXXXXNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD 527
              +                NG+A L  GPRYL LR KCI WLNHLS +SGIFIP+ SL+LD
Sbjct:   382 NVQDCDLQPLLYTIVQVINGVAQLIIGPRYLLLRVKCIHWLNHLSRTSGIFIPIASLVLD 441

Query:   528 VLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISF 587
             +LEYK + +  K  +     S VKLPK+WLKS+NF+E C+FS IELL+ HFAQWS+HISF
Sbjct:   442 MLEYKTTNDGEKQEQKLEAVSTVKLPKNWLKSQNFQEQCIFSVIELLAVHFAQWSFHISF 501

Query:   588 PELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEA 647
             P+LATIP++ L+KF E+S +E L+RVVKRFI+ VE NIEFV++KRD+V FSPNDQQS + 
Sbjct:   502 PDLATIPVMRLKKFHERSTMEGLKRVVKRFIEQVESNIEFVQRKRDDVTFSPNDQQSADT 561

Query:   648 FLQLEKCSGNTPFTQYYRSVMEKA 671
             F+QLEK + N P+TQYY+S+++KA
Sbjct:   562 FMQLEKQNANAPYTQYYQSIIDKA 585
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0010582 "floral meristem determinacy" evidence=IGI
GO:0001510 "RNA methylation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
UNIPROTKB|Q3SYU1 NOC2L "Nucleolar complex protein 2 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284383 DDB_G0284383 "Nucleolar complex protein 2 homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3T9 NOC2L "Nucleolar complex protein 2 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV71 NOC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTF3 Noc2l "Protein Noc2l" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1309387 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053778 AN0946 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:1931051 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4MV71 MGG_08867 "Nucleolar complex protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018235001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (684 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028481001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)
   ••   0.500
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   ••   0.463
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •    0.456
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   ••   0.451
GSVIVG00021672001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)
   ••   0.449
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   ••   0.445
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •    0.440
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •    0.431
GSVIVG00018638001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)
   •    0.424
GSVIVG00021349001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
   •    0.418

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query724
pfam03715301 pfam03715, Noc2, Noc2p family 1e-107
COG5604523 COG5604, COG5604, Uncharacterized conserved protei 4e-35
>gnl|CDD|217688 pfam03715, Noc2, Noc2p family Back     alignment and domain information 
 Score =  329 bits (845), Expect = e-107
 Identities = 110/300 (36%), Positives = 169/300 (56%), Gaps = 5/300 (1%)

Query: 371 SSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNL 430
            SD  +  L  MY AF+ + KF  P     + F++NS  EL   D   S   A V I  L
Sbjct: 1   PSDLLETVLKGMYLAFVKNSKFTNPHTLPLINFMKNSAAELFGLDEEVSYQHAFVYIRQL 60

Query: 431 SRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYD--LQPLLYIIIQIINGM 488
           +  L+  L +K K+A K + +WQY + +D W   +S   +  +  L+PL+Y ++Q+I G+
Sbjct: 61  AIHLRNALNSKTKDAYKSVYNWQYIHSLDFWSRVLSAAANGSESPLRPLIYPLVQVILGV 120

Query: 489 ATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPG--KDFNF 546
             L P  RY PLR   I  L  LS S+G+FIP+  L+L+VLE     +  K    K F+F
Sbjct: 121 IRLIPTARYFPLRLHLIRSLIRLSRSTGVFIPLAPLLLEVLESAEFNKPPKKSTLKPFDF 180

Query: 547 SSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSD 606
           S  +KL K +L++R +++  +   +ELL+ + A WS  I+FPEL    +I L++F + S 
Sbjct: 181 SVTLKLSKAYLRTRVYQDGLIEQVVELLTEYLALWSKSIAFPELVLPVVIQLKRFLKSSK 240

Query: 607 VESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRS 666
                + +K+ ++ +EQN +F++KKR  V F PND+  VEAFL+  K    TP  +YY+S
Sbjct: 241 NAKFNKQLKQLLEKLEQNSKFIEKKRSNVDFGPNDRAEVEAFLKDLKWEK-TPLGKYYQS 299

At least one member, Noc2p from yeast, is required for a late step in 60S subunit export from the nucleus. It has also been shown to co-precipitate with Nug1p, a nuclear GTPase also required for ribosome nucleus export. This family was formerly known as UPF0120. Length = 301
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 724
KOG2256661 consensus Predicted protein involved in nuclear ex 100.0
COG5604523 Uncharacterized conserved protein [Function unknow 100.0
PF03715299 Noc2: Noc2p family; InterPro: IPR005343 This is a 100.0
PF04147840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 99.16
KOG2147823 consensus Nucleolar protein involved in 40S riboso 97.62
PF04147840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 97.53
KOG2256661 consensus Predicted protein involved in nuclear ex 96.91
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 94.22
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 93.32
KOG2141822 consensus Protein involved in high osmolarity sign 92.44
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 92.17
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 88.84
KOG0212675 consensus Uncharacterized conserved protein [Funct 84.44
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 80.92
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-154  Score=1283.68  Aligned_cols=554  Identities=38%  Similarity=0.617  Sum_probs=511.3

Q ss_pred             HHHHHHHHHhhcCChhhhHhhhhhCccccCCCCCCCCCcccccccc---cc-CCCCCCC----------CCcccCCcccH
Q 004917          131 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDD---GM-QSMDEDG----------PHLYLNKLLTS  196 (724)
Q Consensus       131 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~~~~~~d~de~~~d---e~-~~~~~~~----------~~~~~~~~lT~  196 (724)
                      ..|+++|++|+++||+||+||++||++||+|++ |+++|++.|++|   ++ .++++|.          .+...+++||.
T Consensus        66 ~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~d~~~~~~~~~~~~~~~~~k~it~  144 (661)
T KOG2256|consen   66 SKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEEDDEEDEIDKETDKKKNSGKVITV  144 (661)
T ss_pred             hhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccccccccccchhhhhhcccchhhhhcccchhhH
Confidence            789999999999999999999999999999996 443333322211   11 0111111          11124568999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHhHHHHHHHhCCcCCCC
Q 004917          197 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK  276 (724)
Q Consensus       197 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~~VFn~vv~~~L~~lp~~l~~~l~~k~~~~  276 (724)
                      .+|.+|++++...+++..+|++++||||||+++.+++   .++.+|.|+|+++||+||.+||+++|.+|+++|+++..++
T Consensus       145 ~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~---~e~~ky~i~ds~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~  221 (661)
T KOG2256|consen  145 SNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDS---AEAPKYVITDSEAFNAVVIFCLQEMPDILRKLLRGKVDKD  221 (661)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHHHHhccccc---ccccceeechHHHHHHHHHHHHHHhHHHHHHHcCCCcCCC
Confidence            9999999999999999999999999999999998762   2578999999999999999999999999999999998654


Q ss_pred             CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhH
Q 004917          277 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVS  356 (724)
Q Consensus       277 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vr  356 (724)
                      +....  ....+|.++++++|||++++++||+++||+++++++|++++.++||+++||+++|.|+|++|++||||++++|
T Consensus       222 ~~~~~--~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~r  299 (661)
T KOG2256|consen  222 KSLFL--KTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLR  299 (661)
T ss_pred             ccccc--cccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchh
Confidence            44442  3334499999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 004917          357 FHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQL  436 (724)
Q Consensus       357 v~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRn  436 (724)
                      +.||+||+++|+.+.+.+++.|||+||.+||+||++|+++|||+||||+||++||||+|+..+|||||+|||||||||||
T Consensus       300 v~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRn  379 (661)
T KOG2256|consen  300 VLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRN  379 (661)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhchhhhhhhcccchhHHHHHHHHHHHc-ccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004917          437 GLQTKKKEAVKKICSWQYANCIDLWVTYIS-HCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS  515 (724)
Q Consensus       437 a~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs-~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t  515 (724)
                      ||++++|++++.||||||||||+||++||| ++..+|+|+||+|||||||+||||||||+|||||||||||+|++||++|
T Consensus       380 am~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ss  459 (661)
T KOG2256|consen  380 AMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSS  459 (661)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999 8888999999999999999999999999999999999999999999999


Q ss_pred             CcceechhHHHHhhccccccC--CCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhH
Q 004917          516 GIFIPVTSLMLDVLEYKVSKE--VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATI  593 (724)
Q Consensus       516 ~~fIPl~p~LleiL~s~~~k~--~~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P  593 (724)
                      |+||||+|+|+|||.+...++  ++.+++|+||.++||||+.||+|++||++|++++++||+|||++||+|||||||++|
T Consensus       460 g~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPELv~p  539 (661)
T KOG2256|consen  460 GTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPELVLP  539 (661)
T ss_pred             CceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHH
Confidence            999999999999999986543  455679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q 004917          594 PLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAAS  673 (724)
Q Consensus       594 ~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~~~~~~  673 (724)
                      +|++||+|+|+|+++++++.+++|+++|++|++||+++|..|+|+|+|.++|++|+++ ..|.+||||+||.+|++++++
T Consensus       540 ~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~~V~afe~~-~~~~~TPl~~yy~~~rk~~~~  618 (661)
T KOG2256|consen  540 VIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQAVSAFEQD-LDWNKTPLGQYYSSWRKVREE  618 (661)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995 679999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHH
Q 004917          674 RSLIMNENKSFLEQKKQK  691 (724)
Q Consensus       674 r~~~~~~~~~~~~~~~~~  691 (724)
                      ++++++|+.++.+.++++
T Consensus       619 k~r~~~e~~~~~d~~~~~  636 (661)
T KOG2256|consen  619 KNRLAVESSEEDDKDKPK  636 (661)
T ss_pred             HHHHHhhhhhhhhhhhhh
Confidence            999999999998776655

>COG5604 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query724
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 76.0 bits (186), Expect = 3e-14
 Identities = 95/660 (14%), Positives = 205/660 (31%), Gaps = 178/660 (26%)

Query: 96  EDSNCLPIAESEIHLGENGAAGKPSAQNQEI--LLELENKKKKLSRLKAKDPGFSKFLES 153
           ++ +C  + +            K     +EI  ++  ++      RL      F   L  
Sbjct: 31  DNFDCKDVQDMP----------KSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSK 74

Query: 154 HDKGLKSFRNE----------NAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWC 203
            ++ ++ F  E          +    E  +     +   E       ++L   + + +  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKY 129

Query: 204 HLVKEQHNASAFISLLNAYRA---ACHYGAESTGILGSG-SGAPMLDCETFCKILMFVLR 259
           ++ + Q       +LL    A            G+LGSG +    +  +  C       +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKT---WVALDV-CLSYKVQCK 179

Query: 260 EADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFS 319
               +F   L    NC     +          +  L K   +      +++  S  +   
Sbjct: 180 MDFKIFWLNLK---NCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 320 LNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCL 379
           ++ ++  +          RRL+K   +           +  L+L +V +           
Sbjct: 227 IHSIQAEL----------RRLLKSKPYE----------NCLLVLLNVQNA---------- 256

Query: 380 IKMYKAFIGHCK------------FAEPALFKH--LQFLRNSFVELCSQDLLRSSNKAKV 425
            K + AF   CK            F   A   H  L     +      + LL        
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDC 313

Query: 426 SINNLSRI------LQLGL-QTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPL- 477
              +L R        +L +     ++ +    +W++ NC  L  T I   ++   L+P  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLN--VLEPAE 370

Query: 478 ---LYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLE-YKV 533
              ++  + +       FP   ++P     + W + + S          ++++ L  Y +
Sbjct: 371 YRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSL 416

Query: 534 SKEVGKPGK----DFNFSSAVKLPK----H--WLKSRNFREDCVFSAIELLSAHFAQWSY 583
            ++  K              VKL      H   +   N  +   F + +L+  +  Q+ Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFY 474

Query: 584 -HISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQ 642
            HI           HL+  +    +   R V   F+D       F+++K    + + N  
Sbjct: 475 SHIGH---------HLKNIEHPERMTLFRMV---FLD-----FRFLEQKIRHDSTAWNAS 517

Query: 643 QSVEAFLQ-LEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQK--RKRGQNIV 699
            S+   LQ L+          Y   + +       ++N    FL + ++     +  +++
Sbjct: 518 GSILNTLQQLKF---------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query724
2x19_B963 Importin-13; nuclear transport, protein transport; 89.69
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 88.19
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 85.88
2x1g_F971 Cadmus; transport protein, developmental protein, 83.75
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 81.76
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 81.54
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 80.06
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
Probab=89.69  E-value=24  Score=41.57  Aligned_cols=132  Identities=9%  Similarity=0.098  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---
Q 004917          298 SYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS---  372 (724)
Q Consensus       298 syl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~---  372 (724)
                      .++..++..|.++.  ++.+-..++.-+..+..|+...+..+..++..++.....  ..|+..|-..+.++|...+.   
T Consensus       486 ~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~  563 (963)
T 2x19_B          486 DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP  563 (963)
T ss_dssp             SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777776776  355555666677777788888888888888888887754  67888888888999876543   


Q ss_pred             chHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhh
Q 004917          373 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQ  439 (724)
Q Consensus       373 ~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~  439 (724)
                      ++++.++..+...+-+.    ... .......-.|+.-+..--+   ...--.|+.+|.-.|.+.+.
T Consensus       564 p~~~~il~~l~~~l~~~----~~~-~~~~~~~~eai~~i~~~~~---~~~~~~~~~~l~~~l~~~l~  622 (963)
T 2x19_B          564 PYAANIVAVSQDVLMKQ----IHK-TSQCMWLMQALGFLLSALQ---VEEILKNLHSLISPYIQQLE  622 (963)
T ss_dssp             TTHHHHHHHHHHHHHTT----CSC-HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccC----CCC-hHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence            55666665554433211    111 1222233344444433211   33344567777666665554
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00