Citrus Sinensis ID: 004942

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--

MEDSLNGGDLHVNVARQSSFRQGGSLKSSLSGRSTPKNSPSFRRLNASRTPRREVRSASLQWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRRDLIANHSDLDINNGTIKTLGADSKKIDMVLTQRRNNDASRRSVAKRKKSKRSSRGKGRGKQKAKLDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN

ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHcccccccccccccccEEEEEEEccccHHccccccccccccccEEEcccccccHHHccccccccccccccccccHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHcccEEEEccccHHHHHHccccEEEEccHHHHHHHHHHHHHcccccccEEEEEEcccHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccEEEEccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHcccccccccEEEEEccccccccccccccHHHHHcccccccEEEEEcccccccccHHHHHHHHHHccccccccEEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHccEEEEccccccccccHHHHHHHHccccEEEcccccccccccccccEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

cccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccEEEEcccccccccHEcccccccccccccHHHHccccEEEccccEEEccccccEccccccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEcccHHHcccccccccccEcEEEcccccHHHHHHEcccccccccccccHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHcccEEEccHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccEEEEccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHEcccccccHHHHHHHHHHHHHHcccccccccHHHHHcHHHHHHccccHHHHHcccHHHHHHHcccccccEEEEcccccHHHcccccHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccEEEEccccccccHHHHHHHHHHccccEEEEccccccEEEEcccEEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHcc

medslnggdlHVNVArqssfrqggslksslsgrstpknspsfrrlnasrtprrevRSASLQWFRSNRLVYWLLLITLWTYLGFYVQsrwahgenndkflgfggkrrneivdsnqnKRRDLIanhsdldinngtiktlgadskKIDMVLTQRRNNDASRRSVAKRKkskrssrgkgrgkqkaKLDVESNymeaqlpeipmtnasygllvgpfgltedrilewspekrsgtcdrkgdfaRFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLskrgglmpELARRKIKVLedrgepsfktsmKADLVIAGSAVCATWIDQYitrfpaggsQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLklrsqpavvplsvndeLAFVAGFtcslntptsspekmREKRNLLRDSVrkemgltdqDMLVLSLssinpgkgQLLLVESAQLMieqepsmddskirksrnvgrkkssltsrhhlrgrgllqmsddvglssnelsvssesftqlnepvrknllspslftsigntdavsfgsghlrrkvlsksdgkQQQALKILIGsvgsksnkvpYVKEILEFLSQHSnlskamlwtpattRVASLYSAADVYVinsqglgetfgRVTIEAMAfgvpvlgtdaggtkeIVEHNvtgllhppghpgaQVLAQNLRYLLKNPSVRERMAMEgrkksnglaerhslgrycn

medslnggDLHVNvarqssfrqggslksslsgrstpknspsfrrlnasrtprrevrsaslqwfrsNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRRDLianhsdldinngtiktlgadskkidmvltqrrnndasrrsvakrkkskrssrgkgrgkqkakldveSNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILewspekrsgtcdrkgDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVlskrgglmpelARRKIKvledrgepsfktsmkaDLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFlsesqtkqwlTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTcslntptsspekmrekRNLLRDSVrkemgltdqDMLVLSLSSINPGKGQLLLVESAQLMIEqepsmddskirksrnvgrkkssltsrhhlrgrgllqmsdDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVlsksdgkqqQALKIligsvgsksnkVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAmegrkksnglaerhslgrycn

MEDSLNGGDLHVNVARQSSFRQggslksslsgrsTPKNSPSFRRLNASRTPRREVRSASLQWFRSNRlvywlllitlwtylGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRRDLIANHSDLDINNGTIKTLGADSKKIDMVLTQRRNNDasrrsvakrkkskrssrgkgrgkqkakLDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGlssnelsvssesFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN

**********************************************************SLQWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGK***********************DINNGTI**************************************************************IPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL**********SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSL********************************LVLSL********QLLLV******************************************************************************LFTSIGNTDAVSF*******************ALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL*******************************

***********VN***********************************************QWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKF***************************************GADSKKIDMVL***********************************************EIPMTNASYGLLVGPFGLTEDR********************RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR**********KIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN

********DLHVNVARQS************************RRLN***********ASLQWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRRDLIANHSDLDINNGTIKTLGADSKKIDMVLTQ*********************************DVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLN************RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ************************RHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRK**********QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN

******GGDLHVNVARQS**************************************SASLQWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRRDLIANHSDLDINNGTIKTLGADSKKIDMVLTQRR************************GKQKAKLDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		722	2.2.26 [Sep-21-2011]
P42982		377	Uncharacterized glycosylt	yes	no	0.076	0.145	0.473	9e-07
Q59002		390	Uncharacterized glycosylt	yes	no	0.114	0.212	0.379	5e-06
O34413		407	Putative glycosyltransfer	no	no	0.145	0.257	0.327	5e-06
O24301		809	Sucrose synthase 2 OS=Pis	N/A	no	0.106	0.095	0.344	1e-05
D1BD84		420	D-inositol 3-phosphate gl	yes	no	0.162	0.278	0.330	1e-05
O05083		353	Uncharacterized glycosylt	yes	no	0.152	0.311	0.286	1e-05
D2Q1C4		424	D-inositol 3-phosphate gl	no	no	0.126	0.214	0.368	3e-05
P10691		805	Sucrose synthase OS=Solan	N/A	no	0.155	0.139	0.296	4e-05
Q5YP47		451	D-inositol 3-phosphate gl	yes	no	0.192	0.308	0.326	4e-05
C0ZUT0		442	D-inositol 3-phosphate gl	yes	no	0.145	0.237	0.342	4e-05

>sp\|P42982\|YPJH_BACSU Uncharacterized glycosyltransferase YpjH OS=Bacillus subtilis (strain 168) GN=ypjH PE=3 SV=2	Back alignment and function desciption

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672
           RV  LYS +D+ ++ S+   E+FG V +EAMA GVP +GT+ GG  E++++NV+G L
Sbjct: 265 RVEDLYSISDLKLLLSEK--ESFGLVLLEAMACGVPCIGTNIGGIPEVIKNNVSGFL 319

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 4EC: .EC: -EC: .EC: -

>sp\|Q59002\|Y1607_METJA Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1607 PE=3 SV=1	Back alignment and function description

>sp\|O34413\|YTCC_BACSU Putative glycosyltransferase YtcC OS=Bacillus subtilis (strain 168) GN=ytcC PE=3 SV=1	Back alignment and function description

>sp\|O24301\|SUS2_PEA Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1	Back alignment and function description

>sp\|D1BD84\|MSHA_SANKS D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) GN=mshA PE=3 SV=1	Back alignment and function description

>sp\|O05083\|Y1698_HAEIN Uncharacterized glycosyltransferase HI_1698 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1698 PE=3 SV=1	Back alignment and function description

>sp\|D2Q1C4\|MSHA_KRIFD D-inositol 3-phosphate glycosyltransferase OS=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) GN=mshA PE=3 SV=1	Back alignment and function description

>sp\|P10691\|SUS1_SOLTU Sucrose synthase OS=Solanum tuberosum PE=2 SV=1	Back alignment and function description

>sp\|Q5YP47\|MSHA_NOCFA D-inositol 3-phosphate glycosyltransferase OS=Nocardia farcinica (strain IFM 10152) GN=mshA PE=3 SV=1	Back alignment and function description

>sp\|C0ZUT0\|MSHA_RHOE4 D-inositol 3-phosphate glycosyltransferase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=mshA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
147838732		734	hypothetical protein VITISV_013841 [Viti	0.987	0.971	0.688	0.0
255574530		686	glycosyltransferase, putative [Ricinus c	0.918	0.966	0.664	0.0
225442687		691	PREDICTED: uncharacterized protein LOC10	0.923	0.965	0.673	0.0
297743306		683	unnamed protein product [Vitis vinifera]	0.916	0.969	0.653	0.0
224054196		681	predicted protein [Populus trichocarpa]	0.900	0.954	0.670	0.0
449464260		682	PREDICTED: uncharacterized protein LOC10	0.921	0.975	0.605	0.0
356555993		701	PREDICTED: uncharacterized protein LOC10	0.930	0.958	0.630	0.0
356547414		701	PREDICTED: uncharacterized protein LOC10	0.930	0.958	0.617	0.0
15233237		697	UDP-glycosyltransferase-like protein [Ar	0.897	0.929	0.612	0.0
297847636		670	glycosyl transferase family 1 protein [A	0.898	0.968	0.590	0.0

>gi\|147838732\|emb\|CAN71826.1\| hypothetical protein VITISV_013841 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/725 (68%), Positives = 593/725 (81%), Gaps = 12/725 (1%)

Query: 1   MEDSLNGGDLHVNVARQSSFRQGGSLKSSLSGRSTPKNSPSFRRLNASRTPRREVRSASL 60
           ME+    GD H NV RQSS R GGSLKS+LSGRSTP+NSPSFRR ++SRTPRRE RS+ +
Sbjct: 1   MEEGNGRGDFHGNVVRQSSLRPGGSLKSTLSGRSTPRNSPSFRRSHSSRTPRREARSSGV 60

Query: 61  --QWFRSNRLVYWLLLITLWTYLGFYVQSRWAHGENNDKFLGFGGKRRNEIVDSNQNKRR 118
             QWFR+NR+V+WL+LITLW YLGFYVQS+WAHG+NN+  +GFGGK  N I DS  N++ 
Sbjct: 61  GSQWFRNNRVVFWLILITLWAYLGFYVQSKWAHGDNNEDIIGFGGKPNNGISDSELNRKA 120

Query: 119 DLIANHSDLDINNGTIKTLGADSKKIDMVLTQRRNNDASRRSVAKRKKSKRSS---RGKG 175
            LIAN   L + NG+ K      KK+D+VL ++ N+  SRRS + +K+SK+S    RGK 
Sbjct: 121 PLIANDKLLAVKNGSDKNPVGSGKKVDVVLAKKGNSVPSRRSASSKKRSKKSERSLRGKT 180

Query: 176 RGKQKAKLDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGD 235
           R KQK K +VE   M+ Q  EIP  N SYGLLVGPFG TEDRILEWSPEKRSGTCDR+G+
Sbjct: 181 R-KQKTKTEVEVTEMDEQEQEIPKLNTSYGLLVGPFGSTEDRILEWSPEKRSGTCDRRGE 239

Query: 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKI 295
            AR VWSRKF+LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK+GGLMPELARR+I
Sbjct: 240 LARLVWSRKFVLIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKKGGLMPELARRRI 299

Query: 296 KVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA 355
           KVLEDR + SFKT+MKADLVIAGSAVCA+WI+QYI  F AG SQ+VWWIMENRREYFDR+
Sbjct: 300 KVLEDRADLSFKTAMKADLVIAGSAVCASWIEQYIAHFTAGSSQIVWWIMENRREYFDRS 359

Query: 356 KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTP 415
           KLV++RVK+L+FLSESQ+KQWLTWC+EE ++L SQPAVVPLSVNDELAFVAG TCSLNTP
Sbjct: 360 KLVINRVKMLIFLSESQSKQWLTWCKEENIRLISQPAVVPLSVNDELAFVAGITCSLNTP 419

Query: 416 TSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475
           + + EKM+EKR LLRDS+RKEMGLTD DML+LSLSSINPGKGQ  L+ES + MIEQEPS 
Sbjct: 420 SFTTEKMQEKRRLLRDSIRKEMGLTDTDMLLLSLSSINPGKGQFFLLESVRSMIEQEPSQ 479

Query: 476 DDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535
           DD +++    +G+ +S+ + +H+   R LLQ  +   +SS+ L +S+ESF +LN P  KN
Sbjct: 480 DDPELKDLAKIGQDQSNFSGKHY--SRALLQNVNHFSVSSSGLRLSNESFIELNGPKSKN 537

Query: 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595
           L+ PSLF SI  +DAVS GSG+ RRKVLS+++G Q+QALK+LIGSVGSKSNKVPYVK +L
Sbjct: 538 LMLPSLFPSISPSDAVSIGSGYKRRKVLSENEGTQEQALKVLIGSVGSKSNKVPYVKGLL 597

Query: 596 EFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655
            FL +HSNLSK++LWTPATTRVASLYSAADVYVINSQG+GETFGRV+IEAMAFG+ VLGT
Sbjct: 598 RFLXRHSNLSKSVLWTPATTRVASLYSAADVYVINSQGMGETFGRVSIEAMAFGLTVLGT 657

Query: 656 DAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERH 715
           DAGGT EIVE NVTGLLHP GH G Q+L++N+R+LLKNPS RE+M   GRKK     ER 
Sbjct: 658 DAGGTXEIVEQNVTGLLHPVGHLGTQILSENIRFLLKNPSAREQMGKRGRKK----VERM 713

Query: 716 SLGRY 720
            L R+
Sbjct: 714 YLKRH 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255574530\|ref\|XP_002528176.1\| glycosyltransferase, putative [Ricinus communis] gi\|223532388\|gb\|EEF34183.1\| glycosyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225442687\|ref\|XP_002284822.1\| PREDICTED: uncharacterized protein LOC100246448 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297743306\|emb\|CBI36173.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224054196\|ref\|XP_002298139.1\| predicted protein [Populus trichocarpa] gi\|222845397\|gb\|EEE82944.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449464260\|ref\|XP_004149847.1\| PREDICTED: uncharacterized protein LOC101207532 [Cucumis sativus] gi\|449496350\|ref\|XP_004160111.1\| PREDICTED: uncharacterized protein LOC101223486 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356555993\|ref\|XP_003546312.1\| PREDICTED: uncharacterized protein LOC100793827 [Glycine max]	Back alignment and taxonomy information

>gi\|356547414\|ref\|XP_003542107.1\| PREDICTED: uncharacterized protein LOC100795000 [Glycine max]	Back alignment and taxonomy information

>gi|15233237|ref|NP_188215.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] gi|334185383|ref|NP_001189906.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] gi|9294599|dbj|BAB02880.1| glycosyl transferases-like protein [Arabidopsis thaliana] gi|20147191|gb|AAM10311.1| AT3g15940/MVC8_7 [Arabidopsis thaliana] gi|22796166|emb|CAD45267.1| putative glycosyltransferase [Arabidopsis thaliana] gi|332642228|gb|AEE75749.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] gi|332642229|gb|AEE75750.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297847636\|ref\|XP_002891699.1\| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata] gi\|297337541\|gb\|EFH67958.1\| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
TAIR\|locus:2093925		697	AT3G15940 [Arabidopsis thalian	0.645	0.668	0.577	2e-197
TAIR\|locus:2018144		670	AT1G52420 [Arabidopsis thalian	0.660	0.711	0.549	2.3e-185
TAIR\|locus:2013089		479	AT1G19710 [Arabidopsis thalian	0.259	0.390	0.361	9.4e-34
TAIR\|locus:2018392		463	AT1G75420 [Arabidopsis thalian	0.259	0.403	0.368	1e-16
TIGR_CMR\|CHY_0668		396	CHY_0668 "glycosyl transferase	0.156	0.285	0.327	2.4e-07
TIGR_CMR\|GSU_2253		371	GSU_2253 "glycosyl transferase	0.134	0.261	0.346	1.6e-05
TIGR_CMR\|CPS_4999		367	CPS_4999 "glycosyl transferase	0.250	0.493	0.28	2.5e-05
TIGR_CMR\|GSU_3023		2401	GSU_3023 "glycosyl transferase	0.106	0.032	0.382	3.3e-05
TIGR_CMR\|BA_1558		381	BA_1558 "glycosyl transferase,	0.180	0.341	0.311	4e-05
UNIPROTKB\|O07147		374	pimA "GDP-mannose-dependent al	0.116	0.224	0.390	9.7e-05

TAIR\|locus:2093925 AT3G15940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1380 (490.8 bits), Expect = 2.0e-197, Sum P(2) = 2.0e-197
 Identities = 277/480 (57%), Positives = 350/480 (72%)

Query:    35 TPKNSPSFRRLNASRTPRREVRSA--SLQWFRSNRXXXXXXXXXXXXXXGFYVQSRWAHG 92
             TP+ SP+ R++++ RTPRRE + +  ++QWFRSNR              GFYVQSRWAH 
Sbjct:    23 TPRGSPTLRKVHSGRTPRREGKGSGGAVQWFRSNRLLYWLLLITLWTYLGFYVQSRWAHD 82

Query:    93 ENND-KFLGFGGKRRNEIVDSNQNKRRDLIANHSDLDINNGT-IKTLGADSKKIDMVLTQ 150
             ++N  +FL FGGK R +++   QNKRRDL+A+ S   + + T I  LG + K++ + L +
Sbjct:    83 DDNKVEFLRFGGKLREDVLHVEQNKRRDLVADESSHAVVDHTNIVHLGVN-KRMHVTLAK 141

Query:   151 RRNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXLD--VESNYMEAQLPEIPMTNASYGLLV 208
             + ++                            +   +E+  ++ Q  E+P  N +YG L 
Sbjct:   142 KEDSTSRRSVSPRRRTRKASRSSRTRIRSTQKVRKVMETKELDEQDQELPNINVTYGKLF 201

Query:   209 GPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATEL 268
             GPFG  EDRILEWSP+KRSGTCDRK DF R VWSR+F+L+FHELSMTGAP+SMMELA+EL
Sbjct:   202 GPFGSLEDRILEWSPQKRSGTCDRKSDFKRLVWSRRFVLLFHELSMTGAPISMMELASEL 261

Query:   269 LSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQ 328
             LSCGATV AVVLS+RGGL+ EL RR+IKV+ED+GE SFKT+MKADLVIAGSAVCA+WIDQ
Sbjct:   262 LSCGATVYAVVLSRRGGLLQELTRRRIKVVEDKGELSFKTAMKADLVIAGSAVCASWIDQ 321

Query:   329 YITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388
             Y+   PAGGSQ+ WW+MENRREYFDRAK VLDRVKLL+FLSE Q+KQWLTWCEE+ +KLR
Sbjct:   322 YMDHHPAGGSQIAWWVMENRREYFDRAKPVLDRVKLLIFLSEVQSKQWLTWCEEDHVKLR 381

Query:   389 SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLS 448
             SQP +VPLSVNDELAFVAG + SLNTPT + E M+EKR  LR+SVR E GLTD+DMLV+S
Sbjct:   382 SQPVIVPLSVNDELAFVAGVSSSLNTPTLTQETMKEKRQKLRESVRTEFGLTDKDMLVMS 441

Query:   449 LSSINPGKGQLLLVESAQLMIEQEPSMDD------SKIRKSRN-VGRKKSSLTSRHHLRG 501
             LSSINPGKGQLLL+ES  L +E+E + +       SKI K+ N + ++K SL++RH LRG
Sbjct:   442 LSSINPGKGQLLLLESVALALEREQTQEQVAKRNQSKIIKNLNGIRKEKISLSARHRLRG 501

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR\|locus:2018144 AT1G52420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2013089 AT1G19710 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018392 AT1G75420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0668 CHY_0668 "glycosyl transferase, group 1 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2253 GSU_2253 "glycosyl transferase, group 1 family protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4999 CPS_4999 "glycosyl transferase, group 1 family protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_3023 GSU_3023 "glycosyl transferase, group 1/2 family protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_1558 BA_1558 "glycosyl transferase, group 1 family protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|O07147 pimA "GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase" [Mycobacterium leprae TN (taxid:272631)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034440001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (714 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		722
cd03801		374	cd03801, GT1_YqgM_like, This family is most closel	1e-26
cd03808		359	cd03808, GT1_cap1E_like, This family is most close	3e-23
pfam00534		158	pfam00534, Glycos_transf_1, Glycosyl transferases	2e-21
cd03798		377	cd03798, GT1_wlbH_like, This family is most closel	3e-21
cd03814		364	cd03814, GT1_like_2, This family is most closely r	3e-21
cd03825		365	cd03825, GT1_wcfI_like, This family is most closel	1e-20
cd03820		348	cd03820, GT1_amsD_like, This family is most closel	2e-20
cd03800		398	cd03800, GT1_Sucrose_synthase, This family is most	2e-19
cd03799		355	cd03799, GT1_amsK_like, This is a family of GT1 gl	2e-19
COG0438		381	COG0438, RfaG, Glycosyltransferase [Cell envelope	8e-18
TIGR03999		374	TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosamin	8e-17
cd03795		357	cd03795, GT1_like_4, This family is most closely r	9e-17
cd04962		371	cd04962, GT1_like_5, This family is most closely r	4e-15
cd03807		365	cd03807, GT1_WbnK_like, This family is most closel	4e-15
cd03817		374	cd03817, GT1_UGDG_like, This family is most closel	5e-15
cd03811		353	cd03811, GT1_WabH_like, This family is most closel	1e-14
cd03819		355	cd03819, GT1_WavL_like, This family is most closel	4e-14
cd03823		359	cd03823, GT1_ExpE7_like, This family is most close	4e-14
TIGR02149		388	TIGR02149, glgA_Coryne, glycogen synthase, Coryneb	1e-13
cd05844		367	cd05844, GT1_like_7, Glycosyltransferases catalyze	6e-13
PLN02871		465	PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoqu	1e-12
TIGR03088		374	TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH	2e-12
cd01635		229	cd01635, Glycosyltransferase_GTB_type, Glycosyltra	5e-12
cd03794		394	cd03794, GT1_wbuB_like, This family is most closel	2e-11
cd03822		366	cd03822, GT1_ecORF704_like, This family is most cl	4e-11
cd03805		392	cd03805, GT1_ALG2_like, This family is most closel	4e-10
TIGR04157		406	TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG	7e-10
cd04951		360	cd04951, GT1_WbdM_like, This family is most closel	2e-09
cd03792		372	cd03792, GT1_Trehalose_phosphorylase, Trehalose ph	2e-09
cd03821		375	cd03821, GT1_Bme6_like, This family is most closel	7e-09
TIGR04063		397	TIGR04063, stp3, PEP-CTERM/exosortase A-associated	7e-09
TIGR03449		405	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate	1e-08
PRK15484		380	PRK15484, PRK15484, lipopolysaccharide 1,2-N-acety	3e-08
cd03802		335	cd03802, GT1_AviGT4_like, This family is most clos	5e-08
cd03809		365	cd03809, GT1_mtfB_like, This family is most closel	2e-07
cd04949		372	cd04949, GT1_gtfA_like, This family is most closel	2e-07
cd04946		407	cd04946, GT1_AmsK_like, This family is most closel	2e-07
cd03818		396	cd03818, GT1_ExpC_like, This family is most closel	8e-07
cd03813		475	cd03813, GT1_like_3, This family is most closely r	1e-06
PRK15179		694	PRK15179, PRK15179, Vi polysaccharide biosynthesis	6e-06
cd03804		351	cd03804, GT1_wbaZ_like, This family is most closel	9e-06
pfam13692		134	pfam13692, Glyco_trans_1_4, Glycosyl transferases	3e-05
pfam13524		92	pfam13524, Glyco_trans_1_2, Glycosyl transferases	5e-05
TIGR02470		784	TIGR02470, sucr_synth, sucrose synthase	8e-05
PLN00142		815	PLN00142, PLN00142, sucrose synthase	1e-04
PRK15427		406	PRK15427, PRK15427, colanic acid biosynthesis glyc	1e-04
TIGR02472		439	TIGR02472, sucr_P_syn_N, sucrose-phosphate synthas	0.002
TIGR04047		373	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, M	0.003

>gnl\|CDD\|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

 Score =  111 bits (280), Expect = 1e-26
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 7/100 (7%)

Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
           + +LY+AADV+V+ S  L E FG V +EAMA G+PV+ +D GG  E+VE   TGLL PPG
Sbjct: 269 LPALYAAADVFVLPS--LYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPG 326

Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHS 716
            P A  LA+ +  LL +P +R R+    R++   +AER S
Sbjct: 327 DPEA--LAEAILRLLDDPELRRRLGEAARER---VAERFS 361

Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. Length = 374

>gnl\|CDD\|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1	Back alignment and domain information

>gnl\|CDD\|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99985 cd03814, GT1_like_2, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99990 cd03820, GT1_amsD_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99972 cd03799, GT1_amsK_like, This is a family of GT1 glycosyltransferases found specifically in certain bacteria	Back alignment and domain information

>gnl\|CDD\|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	Back alignment and domain information

>gnl\|CDD\|99969 cd03795, GT1_like_4, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|100002 cd04962, GT1_like_5, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99989 cd03819, GT1_WavL_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|233748 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family	Back alignment and domain information

>gnl\|CDD\|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>gnl\|CDD\|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	Back alignment and domain information

>gnl\|CDD\|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>gnl\|CDD\|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>gnl\|CDD\|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99992 cd03822, GT1_ecORF704_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99977 cd03805, GT1_ALG2_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales peptide system	Back alignment and domain information

>gnl\|CDD\|100000 cd04951, GT1_WbdM_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli	Back alignment and domain information

>gnl\|CDD\|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose	Back alignment and domain information

>gnl\|CDD\|99991 cd03821, GT1_Bme6_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|234452 TIGR04063, stp3, PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family	Back alignment and domain information

>gnl\|CDD\|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	Back alignment and domain information

>gnl\|CDD\|185381 PRK15484, PRK15484, lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|99975 cd03802, GT1_AviGT4_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99981 cd03809, GT1_mtfB_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99998 cd04949, GT1_gtfA_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding	Back alignment and domain information

>gnl\|CDD\|99997 cd04946, GT1_AmsK_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99988 cd03818, GT1_ExpC_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99984 cd03813, GT1_like_3, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>gnl\|CDD\|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1	Back alignment and domain information

>gnl\|CDD\|222197 pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	Back alignment and domain information

>gnl\|CDD\|233881 TIGR02470, sucr_synth, sucrose synthase	Back alignment and domain information

>gnl\|CDD\|215073 PLN00142, PLN00142, sucrose synthase	Back alignment and domain information

>gnl\|CDD\|185325 PRK15427, PRK15427, colanic acid biosynthesis glycosyltransferase WcaL; Provisional	Back alignment and domain information

>gnl\|CDD\|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative, glycosyltransferase domain	Back alignment and domain information

>gnl\|CDD\|234448 TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		722
KOG0853		495	consensus Glycosyltransferase [Cell wall/membrane/	100.0
TIGR03088		374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	100.0
cd03807		365	GT1_WbnK_like This family is most closely related	100.0
cd04962		371	GT1_like_5 This family is most closely related to	100.0
cd03812		358	GT1_CapH_like This family is most closely related	100.0
cd03819		355	GT1_WavL_like This family is most closely related	100.0
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	100.0
cd03805		392	GT1_ALG2_like This family is most closely related	100.0
PLN02871		465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	100.0
TIGR03449		405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	100.0
TIGR02472		439	sucr_P_syn_N sucrose-phosphate synthase, putative,	100.0
PRK10307		412	putative glycosyl transferase; Provisional	100.0
cd03796		398	GT1_PIG-A_like This family is most closely related	100.0
cd04951		360	GT1_WbdM_like This family is most closely related	100.0
cd03820		348	GT1_amsD_like This family is most closely related	100.0
cd03818		396	GT1_ExpC_like This family is most closely related	100.0
cd03792		372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	100.0
PRK15427		406	colanic acid biosynthesis glycosyltransferase WcaL	100.0
cd03800		398	GT1_Sucrose_synthase This family is most closely r	100.0
PRK15490		578	Vi polysaccharide biosynthesis protein TviE; Provi	100.0
cd03821		375	GT1_Bme6_like This family is most closely related	100.0
PRK15484		380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	100.0
cd03811		353	GT1_WabH_like This family is most closely related	100.0
PRK09922		359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	100.0
cd03795		357	GT1_like_4 This family is most closely related to	99.98
cd03808		359	GT1_cap1E_like This family is most closely related	99.98
TIGR02149		388	glgA_Coryne glycogen synthase, Corynebacterium fam	99.98
cd03814		364	GT1_like_2 This family is most closely related to	99.98
PRK00654		466	glgA glycogen synthase; Provisional	99.98
cd05844		367	GT1_like_7 Glycosyltransferases catalyze the trans	99.98
PLN02316		1036	synthase/transferase	99.97
cd03822		366	GT1_ecORF704_like This family is most closely rela	99.97
cd03825		365	GT1_wcfI_like This family is most closely related	99.97
TIGR02468		1050	sucrsPsyn_pln sucrose phosphate synthase/possible	99.97
TIGR02095		473	glgA glycogen/starch synthases, ADP-glucose type.	99.97
cd03794		394	GT1_wbuB_like This family is most closely related	99.97
cd03817		374	GT1_UGDG_like This family is most closely related	99.97
PRK14099		485	glycogen synthase; Provisional	99.97
cd03802		335	GT1_AviGT4_like This family is most closely relate	99.97
cd03801		374	GT1_YqgM_like This family is most closely related	99.97
cd03799		355	GT1_amsK_like This is a family of GT1 glycosyltran	99.97
cd03791		476	GT1_Glycogen_synthase_DULL1_like This family is mo	99.97
cd03816		415	GT1_ALG1_like This family is most closely related	99.97
cd04955		363	GT1_like_6 This family is most closely related to	99.97
TIGR02470		784	sucr_synth sucrose synthase. This model represents	99.97
PLN02939		977	transferase, transferring glycosyl groups	99.97
cd03823		359	GT1_ExpE7_like This family is most closely related	99.97
cd03809		365	GT1_mtfB_like This family is most closely related	99.97
cd03798		377	GT1_wlbH_like This family is most closely related	99.96
cd03806		419	GT1_ALG11_like This family is most closely related	99.96
PRK10125		405	putative glycosyl transferase; Provisional	99.96
PRK14098		489	glycogen synthase; Provisional	99.96
cd03813		475	GT1_like_3 This family is most closely related to	99.96
PLN00142		815	sucrose synthase	99.96
PLN02949		463	transferase, transferring glycosyl groups	99.95
TIGR03087		397	stp1 sugar transferase, PEP-CTERM/EpsH1 system ass	99.95
PLN02846		462	digalactosyldiacylglycerol synthase	99.95
cd04949		372	GT1_gtfA_like This family is most closely related	99.95
TIGR02918		500	accessory Sec system glycosylation protein GtfA. M	99.95
cd03804		351	GT1_wbaZ_like This family is most closely related	99.95
cd04946		407	GT1_AmsK_like This family is most closely related	99.94
PLN02275		371	transferase, transferring glycosyl groups	99.94
KOG1111		426	consensus N-acetylglucosaminyltransferase complex,	99.93
PLN02501		794	digalactosyldiacylglycerol synthase	99.93
PHA01630		331	putative group 1 glycosyl transferase	99.92
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	99.91
cd03785		350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	99.9
PF00534		172	Glycos_transf_1: Glycosyl transferases group 1; In	99.9
PHA01633		335	putative glycosyl transferase group 1	99.9
PRK05749		425	3-deoxy-D-manno-octulosonic-acid transferase; Revi	99.9
cd03788		460	GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a	99.89
TIGR01133		348	murG undecaprenyldiphospho-muramoylpentapeptide be	99.89
TIGR02400		456	trehalose_OtsA alpha,alpha-trehalose-phosphate syn	99.88
PRK13609		380	diacylglycerol glucosyltransferase; Provisional	99.82
cd03793		590	GT1_Glycogen_synthase_GSY2_like Glycogen synthase,	99.81
PLN03063		797	alpha,alpha-trehalose-phosphate synthase (UDP-form	99.81
cd01635		229	Glycosyltransferase_GTB_type Glycosyltransferases	99.79
PRK14501		726	putative bifunctional trehalose-6-phosphate syntha	99.78
PLN02605		382	monogalactosyldiacylglycerol synthase	99.78
PRK13608		391	diacylglycerol glucosyltransferase; Provisional	99.74
COG0438		381	RfaG Glycosyltransferase [Cell envelope biogenesis	99.73
COG0297		487	GlgA Glycogen synthase [Carbohydrate transport and	99.73
cd04950		373	GT1_like_1 Glycosyltransferases catalyze the trans	99.72
PRK00025		380	lpxB lipid-A-disaccharide synthase; Reviewed	99.7
TIGR02398		487	gluc_glyc_Psyn glucosylglycerol-phosphate synthase	99.67
TIGR00236		365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	99.6
PLN03064		934	alpha,alpha-trehalose-phosphate synthase (UDP-form	99.57
cd03786		363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	99.57
PF13692		135	Glyco_trans_1_4: Glycosyl transferases group 1; PD	99.54
KOG1387		465	consensus Glycosyltransferase [Cell wall/membrane/	99.52
PRK09814		333	beta-1,6-galactofuranosyltransferase; Provisional	99.51
TIGR00215		385	lpxB lipid-A-disaccharide synthase. Lipid-A precur	99.45
TIGR03713		519	acc_sec_asp1 accessory Sec system protein Asp1. Th	99.44
KOG2941		444	consensus Beta-1,4-mannosyltransferase [Posttransl	99.25
PF13524		92	Glyco_trans_1_2: Glycosyl transferases group 1	99.25
TIGR02094		601	more_P_ylases alpha-glucan phosphorylases. This fa	99.15
PF00982		474	Glyco_transf_20: Glycosyltransferase family 20; In	99.03
PRK12446		352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	99.03
TIGR02919		438	accessory Sec system glycosyltransferase GtfB. Mem	98.96
COG0707		357	MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami	98.94
PRK10117		474	trehalose-6-phosphate synthase; Provisional	98.91
PLN02205		854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.86
COG1519		419	KdtA 3-deoxy-D-manno-octulosonic-acid transferase	98.8
cd04299		778	GT1_Glycogen_Phosphorylase_like This family is mos	98.73
TIGR03590		279	PseG pseudaminic acid biosynthesis-associated prot	98.69
PF13439		177	Glyco_transf_4: Glycosyltransferase Family 4; PDB:	98.69
PF05693		633	Glycogen_syn: Glycogen synthase; InterPro: IPR0086	98.66
COG0380		486	OtsA Trehalose-6-phosphate synthase [Carbohydrate	98.65
cd03784		401	GT1_Gtf_like This family includes the Gtfs, a grou	98.54
TIGR03492		396	conserved hypothetical protein. This protein famil	98.37
PF13528		318	Glyco_trans_1_3: Glycosyl transferase family 1	98.37
TIGR03568		365	NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase,	98.28
PF13579		160	Glyco_trans_4_4: Glycosyl transferase 4-like domai	98.09
TIGR01426		392	MGT glycosyltransferase, MGT family. This model de	97.92
PF04007		335	DUF354: Protein of unknown function (DUF354); Inte	97.8
PF02684		373	LpxB: Lipid-A-disaccharide synthetase; InterPro: I	97.76
COG0381		383	WecB UDP-N-acetylglucosamine 2-epimerase [Cell env	97.5
PRK01021		608	lpxB lipid-A-disaccharide synthase; Reviewed	97.45
COG1819		406	Glycosyl transferases, related to UDP-glucuronosyl	97.41
COG0763		381	LpxB Lipid A disaccharide synthetase [Cell envelop	97.33
PF13477		139	Glyco_trans_4_2: Glycosyl transferase 4-like	97.31
PF13844		468	Glyco_transf_41: Glycosyl transferase family 41; P	97.25
COG3980		318	spsG Spore coat polysaccharide biosynthesis protei	97.08
PF04101		167	Glyco_tran_28_C: Glycosyltransferase family 28 C-t	97.06
PF02350		346	Epimerase_2: UDP-N-acetylglucosamine 2-epimerase;	96.95
COG4671		400	Predicted glycosyl transferase [General function p	96.76
COG4641		373	Uncharacterized protein conserved in bacteria [Fun	96.5
PF07429		360	Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc	96.49
PHA03392		507	egt ecdysteroid UDP-glucosyltransferase; Provision	96.42
COG1817		346	Uncharacterized protein conserved in archaea [Func	96.37
KOG3742		692	consensus Glycogen synthase [Carbohydrate transpor	95.81
COG3914		620	Spy Predicted O-linked N-acetylglucosamine transfe	95.63
PRK02797		322	4-alpha-L-fucosyltransferase; Provisional	95.4
PRK14986		815	glycogen phosphorylase; Provisional	95.16
PF04464		369	Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate	95.08
PF09314		185	DUF1972: Domain of unknown function (DUF1972); Int	95.04
COG3660		329	Predicted nucleoside-diphosphate-sugar epimerase [	94.85
PF00343		713	Phosphorylase: Carbohydrate phosphorylase; InterPr	94.7
cd04300		797	GT1_Glycogen_Phosphorylase This is a family of oli	94.66
TIGR00661		321	MJ1255 conserved hypothetical protein. This model	94.45
PF00201		500	UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera	94.28
TIGR02093		794	P_ylase glycogen/starch/alpha-glucan phosphorylase	94.27
PRK14985		798	maltodextrin phosphorylase; Provisional	93.91
PF06258		311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	93.63
COG0058		750	GlgP Glucan phosphorylase [Carbohydrate transport	93.13
KOG1050		732	consensus Trehalose-6-phosphate synthase component	90.0
PLN02448		459	UDP-glycosyltransferase family protein	87.97
PLN02670		472	transferase, transferring glycosyl groups	87.92
PLN02410		451	UDP-glucoronosyl/UDP-glucosyl transferase family p	87.72
PLN02562		448	UDP-glycosyltransferase	87.13
PF03033		139	Glyco_transf_28: Glycosyltransferase family 28 N-t	86.56
PLN03004		451	UDP-glycosyltransferase	86.18
TIGR02195		334	heptsyl_trn_II lipopolysaccharide heptosyltransfer	85.75
PLN02208		442	glycosyltransferase family protein	84.79
PLN02210		456	UDP-glucosyl transferase	84.35
PLN02554		481	UDP-glycosyltransferase family protein	83.99
PLN00414		446	glycosyltransferase family protein	83.32
PLN02764		453	glycosyltransferase family protein	81.97
PRK14089		347	ipid-A-disaccharide synthase; Provisional	81.87
PRK10964		322	ADP-heptose:LPS heptosyl transferase I; Provisiona	81.84
PLN02173		449	UDP-glucosyl transferase family protein	81.35
PLN03007		482	UDP-glucosyltransferase family protein	81.28
PLN02555		480	limonoid glucosyltransferase	80.88

>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

Probab=100.00  E-value=3.3e-40  Score=365.40  Aligned_cols=448  Identities=24%  Similarity=0.235  Sum_probs=368.3

Q ss_pred             CCCCCCcccee-eEeeccchhhcCCCCCCCCceeEEEeccccchhhhhhcccccccccccCCCchhhhhccccEEEEEeC
Q 004942          172 RGKGRGKQKAK-LDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFH  250 (722)
Q Consensus       172 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kkillI~h  250 (722)
                      ....+-.||.. ..++..+..++.|+.|..+.+|+--..++|..|++..+|++..++ .|| .-. ..+++++.++++.|
T Consensus         6 ~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s-~~~-~lg-~~d~G~qV~~l~~h   82 (495)
T KOG0853|consen    6 SSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS-GQD-VLG-LPDTGGQVVYLTSH   82 (495)
T ss_pred             hhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHh-ccc-ccC-CCCCCceEEEEehh
Confidence            34455566664 333344444788999999999999999999999999999999998 777 444 77899999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCCC--ChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchhhHhHH
Q 004942          251 ELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG--LMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWID  327 (722)
Q Consensus       251 els~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g~--l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~~~wi~  327 (722)
                      +.+.+ +|++++.++..|.. ++..|....+.+..+  +.......++.++.+++...++..++.|++|++++.|..|+.
T Consensus        83 ~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~  161 (495)
T KOG0853|consen   83 EDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLL  161 (495)
T ss_pred             hhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHH
Confidence            99999 99999999999876 777777777666553  566677899999999998888888999999999999999999


Q ss_pred             HHHHhccCCCccEEEEEecchhHhHHH--HHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceE
Q 004942          328 QYITRFPAGGSQVVWWIMENRREYFDR--AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFV  405 (722)
Q Consensus       328 ~~i~~~~~g~~~ivw~I~e~r~~yf~~--~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v  405 (722)
                      +++.+ |...+++.||+|+++..++.+  ....+.+...-..-++.+..+|++|+.+.++...+++.+++++++++    
T Consensus       162 ~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~----  236 (495)
T KOG0853|consen  162 KQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDI----  236 (495)
T ss_pred             HHhcC-CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCc----
Confidence            99988 888899999999999999987  33444455555566777778899999999999999999999999986    


Q ss_pred             EeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccc
Q 004942          406 AGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRN  485 (722)
Q Consensus       406 ~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~  485 (722)
                      .+.+.++|...+.+ ++.+++..++..+|...+....++++..+.++.|+||++++++++..+....++           
T Consensus       237 ~~~y~ei~~s~~~~-~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~-----------  304 (495)
T KOG0853|consen  237 TSTYPEIDGSWFTY-GQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPE-----------  304 (495)
T ss_pred             ceeeccccchhccc-cccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCC-----------
Confidence            66667788877766 344455556788888899998899999999999999999999999988665443           


Q ss_pred             cccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEc
Q 004942          486 VGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK  565 (722)
Q Consensus       486 ~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~  565 (722)
                                                                                +...+.||.+++..        
T Consensus       305 ----------------------------------------------------------~~~~~~hl~~~g~~--------  318 (495)
T KOG0853|consen  305 ----------------------------------------------------------PSISSEHLVVAGSR--------  318 (495)
T ss_pred             ----------------------------------------------------------CCCCceEEEEecCC--------
Confidence                                                                      11223344444432        


Q ss_pred             CCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC-CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHH
Q 004942          566 SDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIE  644 (722)
Q Consensus       566 G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L-~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLE  644 (722)
                                   +..+..++...|++++.+++.+. ++ .+.|.|+..+++...|+.+||+.+..++.-.|+||+|+||
T Consensus       319 -------------G~d~~~sen~~~~~el~~lie~~-~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IE  384 (495)
T KOG0853|consen  319 -------------GYDERDSENVEYLKELLSLIEEY-DLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIE  384 (495)
T ss_pred             -------------CccccchhhHHHHHHHHHHHHHh-CccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHH
Confidence                         13344567889999999988766 66 5778887888888888888887666666557999999999


Q ss_pred             HHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHH
Q 004942          645 AMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRY  720 (722)
Q Consensus       645 AMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y  720 (722)
                      |||||+|||+|++||+.|||.++.+|++++++..++..+|+++.++.+||++|.+|+++|++++++ |+|....++.
T Consensus       385 AMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri  461 (495)
T KOG0853|consen  385 AMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERI  461 (495)
T ss_pred             HHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999999999999966545579999999999999999999999999988 8887776664

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	Back alignment and domain information

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	Back alignment and domain information

>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain	Back alignment and domain information

>PRK10307 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli	Back alignment and domain information

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose	Back alignment and domain information

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional	Back alignment and domain information

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional	Back alignment and domain information

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional	Back alignment and domain information

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family	Back alignment and domain information

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK00654 glgA glycogen synthase; Provisional	Back alignment and domain information

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant	Back alignment and domain information

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK14099 glycogen synthase; Provisional	Back alignment and domain information

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria	Back alignment and domain information

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02470 sucr_synth sucrose synthase	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK10125 putative glycosyl transferase; Provisional	Back alignment and domain information

>PRK14098 glycogen synthase; Provisional	Back alignment and domain information

>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN00142 sucrose synthase	Back alignment and domain information

>PLN02949 transferase, transferring glycosyl groups	Back alignment and domain information

>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>PLN02846 digalactosyldiacylglycerol synthase	Back alignment and domain information

>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding	Back alignment and domain information

>TIGR02918 accessory Sec system glycosylation protein GtfA	Back alignment and domain information

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02275 transferase, transferring glycosyl groups	Back alignment and domain information

>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]	Back alignment and domain information

>PLN02501 digalactosyldiacylglycerol synthase	Back alignment and domain information

>PHA01630 putative group 1 glycosyl transferase	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis	Back alignment and domain information

>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PHA01633 putative glycosyl transferase group 1	Back alignment and domain information

>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	Back alignment and domain information

>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor	Back alignment and domain information

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Back alignment and domain information

>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]	Back alignment and domain information

>PRK13609 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis	Back alignment and domain information

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional	Back alignment and domain information

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional	Back alignment and domain information

>PLN02605 monogalactosyldiacylglycerol synthase	Back alignment and domain information

>PRK13608 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase	Back alignment and domain information

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase	Back alignment and domain information

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional	Back alignment and domain information

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)	Back alignment and domain information

>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A	Back alignment and domain information

>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional	Back alignment and domain information

>TIGR00215 lpxB lipid-A-disaccharide synthase	Back alignment and domain information

>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1	Back alignment and domain information

>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1	Back alignment and domain information

>TIGR02094 more_P_ylases alpha-glucan phosphorylases	Back alignment and domain information

>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	Back alignment and domain information

>TIGR02919 accessory Sec system glycosyltransferase GtfB	Back alignment and domain information

>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10117 trehalose-6-phosphate synthase; Provisional	Back alignment and domain information

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]	Back alignment and domain information

>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences	Back alignment and domain information

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG	Back alignment and domain information

>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A	Back alignment and domain information

>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3	Back alignment and domain information

>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin	Back alignment and domain information

>TIGR03492 conserved hypothetical protein	Back alignment and domain information

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1	Back alignment and domain information

>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing	Back alignment and domain information

>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A	Back alignment and domain information

>TIGR01426 MGT glycosyltransferase, MGT family	Back alignment and domain information

>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length	Back alignment and domain information

>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like	Back alignment and domain information

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A	Back alignment and domain information

>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5	Back alignment and domain information

>COG4671 Predicted glycosyl transferase [General function prediction only]	Back alignment and domain information

>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long)	Back alignment and domain information

>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional	Back alignment and domain information

>COG1817 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK02797 4-alpha-L-fucosyltransferase; Provisional	Back alignment and domain information

>PRK14986 glycogen phosphorylase; Provisional	Back alignment and domain information

>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria	Back alignment and domain information

>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases	Back alignment and domain information

>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases	Back alignment and domain information

>TIGR00661 MJ1255 conserved hypothetical protein	Back alignment and domain information

>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule	Back alignment and domain information

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases	Back alignment and domain information

>PRK14985 maltodextrin phosphorylase; Provisional	Back alignment and domain information

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins	Back alignment and domain information

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02448 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN02670 transferase, transferring glycosyl groups	Back alignment and domain information

>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN02562 UDP-glycosyltransferase	Back alignment and domain information

>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PLN03004 UDP-glycosyltransferase	Back alignment and domain information

>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II	Back alignment and domain information

>PLN02208 glycosyltransferase family protein	Back alignment and domain information

>PLN02210 UDP-glucosyl transferase	Back alignment and domain information

>PLN02554 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN00414 glycosyltransferase family protein	Back alignment and domain information

>PLN02764 glycosyltransferase family protein	Back alignment and domain information

>PRK14089 ipid-A-disaccharide synthase; Provisional	Back alignment and domain information

>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional	Back alignment and domain information

>PLN02173 UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN03007 UDP-glucosyltransferase family protein	Back alignment and domain information

>PLN02555 limonoid glucosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		722
2jjm_A		394	Crystal Structure Of A Family Gt4 Glycosyltransfera		1e-06
3mbo_A		414	Crystal Structure Of The Glycosyltransferase Babsha		1e-06
3c4q_A		426	Structure Of The Retaining Glycosyltransferase Msha		5e-04
3c48_A		438	Structure Of The Retaining Glycosyltransferase Msha		6e-04

>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. Length = 394

Back alignment and structure

Iteration: 1

Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 L ++ ++ +L+ VA L + +D+ ++ S+ E+FG V +EAMA GVP +GT Sbjct: 259 LVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRV 316 Query: 658 GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 GG E+++H TG L G +A LLK+ + M R+ Sbjct: 317 GGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARE 363

PyMOL of 2jjm

>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate Length = 414

Back alignment and structure

>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp Length = 426

Back alignment and structure

>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. Length = 438

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		722
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	2e-28
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	3e-27
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	2e-25
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	7e-25
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	3e-24
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	9e-23
3qhp_A		166	Type 1 capsular polysaccharide biosynthesis prote	7e-21
2r60_A		499	Glycosyl transferase, group 1; rossmann-fold; 1.80	1e-20
2f9f_A		177	First mannosyl transferase (WBAZ-1); alpha-beta pr	7e-20
3s28_A		816	Sucrose synthase 1; glycosyltransferase, sucrose m	5e-19
2x0d_A		413	WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge	1e-18
3oy2_A		413	Glycosyltransferase B736L; rossmann fold, GDP-mann	3e-15
2iuy_A		342	Avigt4, glycosyltransferase; antibiotics, family G	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3nb0_A		725	Glycogen [starch] synthase isoform 2; glycogen syn	2e-04

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394	Back alignment and structure

 Score =  117 bits (294), Expect = 2e-28
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 592 KEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP 651
              +  L ++ ++   +L+      VA L + +D+ ++ S    E+FG V +EAMA GVP
Sbjct: 253 FCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLS--EKESFGLVLLEAMACGVP 310

Query: 652 VLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707
            +GT  GG  E+++H  TG L   G      +A     LLK+  +   M    R+ 
Sbjct: 311 CIGTRVGGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARES 364

PyMOL of 2jjm

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394	Back alignment and structure

>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Length = 166	Back alignment and structure

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499	Back alignment and structure

>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Length = 177	Back alignment and structure

>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816	Back alignment and structure

>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Length = 413	Back alignment and structure

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Length = 413	Back alignment and structure

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Length = 342	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		722
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	100.0
3fro_A		439	GLGA glycogen synthase; glycosyltransferase family	100.0
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	100.0
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	100.0
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	100.0
2r60_A		499	Glycosyl transferase, group 1; rossmann-fold; 1.80	100.0
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	100.0
1rzu_A		485	Glycogen synthase 1; glycosyl-transferase, GT-B fo	100.0
2qzs_A		485	Glycogen synthase; glycosyl-transferase, GT-B fold	100.0
3oy2_A		413	Glycosyltransferase B736L; rossmann fold, GDP-mann	100.0
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	100.0
2iuy_A		342	Avigt4, glycosyltransferase; antibiotics, family G	99.98
3vue_A		536	GBSS-I, granule-bound starch synthase 1, chloropla	99.97
3s28_A		816	Sucrose synthase 1; glycosyltransferase, sucrose m	99.97
2x0d_A		413	WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge	99.96
1f0k_A		364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	99.95
2bfw_A		200	GLGA glycogen synthase; glycosyltransferase family	99.95
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	99.94
1vgv_A		384	UDP-N-acetylglucosamine 2-epimerase; structural ge	99.92
3beo_A		375	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a	99.92
3qhp_A		166	Type 1 capsular polysaccharide biosynthesis prote	99.92
1uqt_A		482	Alpha, alpha-trehalose-phosphate synthase; glycosy	99.91
2xci_A		374	KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci	99.89
2hy7_A		406	Glucuronosyltransferase GUMK; glycosyltransferases	99.89
2f9f_A		177	First mannosyl transferase (WBAZ-1); alpha-beta pr	99.87
3t5t_A		496	Putative glycosyltransferase; GTB fold, pseudoglyc	99.86
3nb0_A		725	Glycogen [starch] synthase isoform 2; glycogen syn	99.86
1v4v_A		376	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t	99.85
3otg_A		412	CALG1; calicheamicin, TDP, structural genomics, PS	99.76
3s2u_A		365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	99.74
3dzc_A		396	UDP-N-acetylglucosamine 2-epimerase; structural ge	99.7
2iyf_A		430	OLED, oleandomycin glycosyltransferase; antibiotic	99.69
4fzr_A		398	SSFS6; structural genomics, PSI-biology, protein s	99.68
3ot5_A		403	UDP-N-acetylglucosamine 2-epimerase; structural ge	99.61
3tsa_A		391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	99.61
3ia7_A		402	CALG4; glycosysltransferase, calicheamicin, enediy	99.57
3oti_A		398	CALG3; calicheamicin, TDP, structural genomics, PS	99.55
3rsc_A		415	CALG2; TDP, enediyne, structural genomics, PSI-2,	99.49
3rhz_A		339	GTF3, nucleotide sugar synthetase-like protein; gl	99.49
2p6p_A		384	Glycosyl transferase; X-RAY-diffraction,urdamycina	99.46
2yjn_A		441	ERYCIII, glycosyltransferase; transferase, cytochr	99.28
4amg_A		400	Snogd; transferase, polyketide biosynthesis, GT1 f	99.18
4hwg_A		385	UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc	99.17
2iya_A		424	OLEI, oleandomycin glycosyltransferase; carbohydra	99.13
1iir_A		415	Glycosyltransferase GTFB; rossmann fold; 1.80A {Am	99.03
2o6l_A		170	UDP-glucuronosyltransferase 2B7; drug metabolism,	98.94
3h4t_A		404	Glycosyltransferase GTFA, glycosyltransferase; van	98.93
1rrv_A		416	Glycosyltransferase GTFD; GT-B, glycosyltransferas	98.79
3q3e_A		631	HMW1C-like glycosyltransferase; N-glycosylation; 2	98.67
2c4m_A		796	Glycogen phosphorylase; allosteric control, phosph	98.63
2gj4_A		824	Glycogen phosphorylase, muscle form; transferase;	98.54
1l5w_A		796	Maltodextrin phosphorylase; enzymatic catalysis, s	98.43
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.83
2c1x_A		456	UDP-glucose flavonoid 3-O glycosyltransferase; WIN	96.77
3hbm_A		282	UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je	96.68
1ygp_A		879	Yeast glycogen phosphorylase; phosphorylated form,	96.21
3hbf_A		454	Flavonoid 3-O-glucosyltransferase; glycosyltransfe	95.95
1psw_A		348	ADP-heptose LPS heptosyltransferase II; structural	95.67
2pq6_A		482	UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl	94.85
2acv_A		463	Triterpene UDP-glucosyl transferase UGT71G1; glyco	94.32
2vch_A		480	Hydroquinone glucosyltransferase; glycosyltransfer	90.64
3tov_A		349	Glycosyl transferase family 9; structural genomics	89.86
2jzc_A		224	UDP-N-acetylglucosamine transferase subunit ALG13;	88.42
2gt1_A		326	Lipopolysaccharide heptosyltransferase-1; GT-B fol	87.72
2bw0_A		329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	81.34

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*	Back alignment and structure

Probab=100.00  E-value=7.9e-37  Score=317.07  Aligned_cols=341  Identities=19%  Similarity=0.266  Sum_probs=271.1

Q ss_pred             ccccEEEEEeCCCC--CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCCcEEEEcCCcc------------
Q 004942          240 VWSRKFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP------------  304 (722)
Q Consensus       240 ~~~kkillI~hels--~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~gI~Vl~~~~~~------------  304 (722)
                      |+++||+++++.+.  .||++..+.+|+++|  .||+|++++....+.....+ ...+++++..+...            
T Consensus         2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   79 (394)
T 3okp_A            2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHAMA   79 (394)
T ss_dssp             --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHHHH
T ss_pred             CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHHHH
Confidence            45579999999775  899999999999999  69999999966543322333 47889999877642            


Q ss_pred             chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHh------HHHHHhhhccccEEEEecHHhHHHHhh
Q 004942          305 SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY------FDRAKLVLDRVKLLVFLSESQTKQWLT  378 (722)
Q Consensus       305 ~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~y------f~~~k~~l~rvk~li~lS~~~~~~~~~  378 (722)
                      ++.++.+||+||+++.....++......  .+.+++++++|.....+      ....+..+.+++.++++|+...+....
T Consensus        80 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~  157 (394)
T 3okp_A           80 EIIREREIDNVWFGAAAPLALMAGTAKQ--AGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKS  157 (394)
T ss_dssp             HHHHHTTCSEEEESSCTTGGGGHHHHHH--TTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCcchHHHHHHHHHh--cCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHH
Confidence            3444789999999876544444333222  24566887777432111      111234456689999999987443111


Q ss_pred             HHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004942          379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ  458 (722)
Q Consensus       379 ~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~  458 (722)
                      .       .+  +       .   ..+.+||||+|.+.|.+....     .+..+|+++|++++.++|+++|++.+.||+
T Consensus       158 ~-------~~--~-------~---~~~~vi~ngv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~  213 (394)
T 3okp_A          158 A-------FG--S-------H---PTFEHLPSGVDVKRFTPATPE-----DKSATRKKLGFTDTTPVIACNSRLVPRKGQ  213 (394)
T ss_dssp             H-------HC--S-------S---SEEEECCCCBCTTTSCCCCHH-----HHHHHHHHTTCCTTCCEEEEESCSCGGGCH
T ss_pred             h-------cC--C-------C---CCeEEecCCcCHHHcCCCCch-----hhHHHHHhcCCCcCceEEEEEeccccccCH
Confidence            1       11  1       1   135899999999999874332     237789999999888999999999999999


Q ss_pred             HHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCC
Q 004942          459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS  538 (722)
Q Consensus       459 ~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (722)
                      +.+++|++.+.++.++                                                                
T Consensus       214 ~~li~a~~~l~~~~~~----------------------------------------------------------------  229 (394)
T 3okp_A          214 DSLIKAMPQVIAARPD----------------------------------------------------------------  229 (394)
T ss_dssp             HHHHHHHHHHHHHSTT----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhCCC----------------------------------------------------------------
Confidence            9999999999887665                                                                


Q ss_pred             CCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hh
Q 004942          539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TR  616 (722)
Q Consensus       539 ~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~d  616 (722)
                                           ++|+++|+|+..+.++.++.                       ++.++|.|+|.+  ++
T Consensus       230 ---------------------~~l~i~G~g~~~~~l~~~~~-----------------------~~~~~v~~~g~~~~~~  265 (394)
T 3okp_A          230 ---------------------AQLLIVGSGRYESTLRRLAT-----------------------DVSQNVKFLGRLEYQD  265 (394)
T ss_dssp             ---------------------CEEEEECCCTTHHHHHHHTG-----------------------GGGGGEEEEESCCHHH
T ss_pred             ---------------------eEEEEEcCchHHHHHHHHHh-----------------------cccCeEEEcCCCCHHH
Confidence                                 56889999998888887762                       566899999988  89


Q ss_pred             HHHHHHHcCEEEEcCCCCC-------CCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942          617 VASLYSAADVYVINSQGLG-------ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY  689 (722)
Q Consensus       617 v~~lysaADv~V~pS~~l~-------EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~  689 (722)
                      +.++|+.||++|+||.  .       |+||++++||||||+|||+++.||..|++.++ +|++++++|+  ++|+++|..
T Consensus       266 ~~~~~~~ad~~v~ps~--~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~--~~l~~~i~~  340 (394)
T 3okp_A          266 MINTLAAADIFAMPAR--TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDV--DKLSELLIE  340 (394)
T ss_dssp             HHHHHHHCSEEEECCC--CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCH--HHHHHHHHH
T ss_pred             HHHHHHhCCEEEecCc--cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCH--HHHHHHHHH
Confidence            9999999999999997  6       99999999999999999999999999999999 9999999998  999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942          690 LLKNPSVRERMAMEGRKKSNG-LAERHSLGRYC  721 (722)
Q Consensus       690 LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~  721 (722)
                      +++|++.+++|++++++.+++ |+|+..+++|.
T Consensus       341 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  373 (394)
T 3okp_A          341 LLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLT  373 (394)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999976 99999999885

PyMOL of 3okp

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*	Back alignment and structure

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*	Back alignment and structure

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*	Back alignment and structure

>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A	Back alignment and structure

>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A	Back alignment and structure

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*	Back alignment and structure

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*	Back alignment and structure

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*	Back alignment and structure

>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*	Back alignment and structure

>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*	Back alignment and structure

>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*	Back alignment and structure

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*	Back alignment and structure

>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*	Back alignment and structure

>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A	Back alignment and structure

>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}	Back alignment and structure

>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*	Back alignment and structure

>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*	Back alignment and structure

>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*	Back alignment and structure

>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8	Back alignment and structure

>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*	Back alignment and structure

>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*	Back alignment and structure

>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3	Back alignment and structure

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*	Back alignment and structure

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}	Back alignment and structure

>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}	Back alignment and structure

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*	Back alignment and structure

>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}	Back alignment and structure

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*	Back alignment and structure

>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}	Back alignment and structure

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*	Back alignment and structure

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*	Back alignment and structure

>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*	Back alignment and structure

>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}	Back alignment and structure

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}	Back alignment and structure

>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*	Back alignment and structure

>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}	Back alignment and structure

>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}	Back alignment and structure

>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5	Back alignment and structure

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}	Back alignment and structure

>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*	Back alignment and structure

>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5	Back alignment and structure

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A	Back alignment and structure

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}	Back alignment and structure

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...	Back alignment and structure

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*	Back alignment and structure

>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*	Back alignment and structure

>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*	Back alignment and structure

>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7	Back alignment and structure

>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10	Back alignment and structure

>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*	Back alignment and structure

>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*	Back alignment and structure

>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}	Back alignment and structure

>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A	Back alignment and structure

>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*	Back alignment and structure

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		722
d1rzua_		477	c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte	1e-14
d2bisa1		437	c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro	4e-12
d2iw1a1		370	c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt	4e-10
d1uqta_		456	c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA	1e-07

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 16/131 (12%)

Query: 589 PYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF 648
             ++  L   +   +    +           + +  D  +I S+   E  G   + A+ +
Sbjct: 331 VALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRF--EPCGLTQLYALRY 388

Query: 649 GVPVLGTDAGGTKEIV---------EHNVTGLLHPPGHPGAQVLAQNLRYLLK---NPSV 696
           G   +    GG  + V             TG+   P       L Q +R  ++   +P +
Sbjct: 389 GCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDG--LKQAIRRTVRYYHDPKL 446

Query: 697 RERMAMEGRKK 707
             +M   G K 
Sbjct: 447 WTQMQKLGMKS 457

PyMOL of d1rzua_

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437	Back information, alignment and structure

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370	Back information, alignment and structure

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Length = 456	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		722
d2iw1a1		370	Lipopolysaccharide core biosynthesis protein RfaG	100.0
d1rzua_		477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	100.0
d2bisa1		437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.97
d2bfwa1		196	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.92
d2f9fa1		166	First mannosyl transferase WbaZ {Archaeoglobus ful	99.84
d1uqta_		456	Trehalose-6-phosphate synthase, OtsA {Escherichia	99.83
d1f0ka_		351	Peptidoglycan biosynthesis glycosyltransferase Mur	99.0
d1pn3a_		391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	98.96
d1rrva_		401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	98.89
d1iira_		401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	98.72
d1v4va_		373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	97.89
d1l5wa_		796	Maltodextrin phosphorylase (MALP) {Escherichia col	97.29
d2acva1		461	Triterpene UDP-glucosyl transferase UGT71G1 {Medic	97.24
d2gj4a1		824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	97.24
d2pq6a1		473	(Iso)flavonoid glycosyltransferase {Medicago trunc	95.66
d2c1xa1		450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	95.23
d1f6da_		376	UDP-N-acetylglucosamine 2-epimerase {Escherichia c	95.06
d2vcha1		471	Hydroquinone glucosyltransferase {Thale cress (Ara	95.01
d1ygpa_		876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	94.92
d1pswa_		348	ADP-heptose LPS heptosyltransferase II {Escherichi	90.51
d1p3da1		96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.39
d1j6ua1		89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.15
d1o6ca_		377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	88.22

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-35  Score=295.79  Aligned_cols=333  Identities=18%  Similarity=0.231  Sum_probs=231.3

Q ss_pred             EEEe-CCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------------chhhh
Q 004942          246 ILIF-HELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------SFKTS  309 (722)
Q Consensus       246 llI~-hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------------~~~~~  309 (722)
                      .|++ +.+..||++..+++||++|.++||+|+++|....+...     .+++++..+...               .....
T Consensus         3 ~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (370)
T d2iw1a1           3 AFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-----KAFELIQVPVKSHTNHGRNAEYYAWVQNHLKE   77 (370)
T ss_dssp             EEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC-----TTCEEEECCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHHHCCCEEEEEecCCCCCCC-----CceEEEEcCccccccchhhHHHHHHHHHHHHh
Confidence            4444 35678999999999999999999999999966554432     467777665433               12237


Q ss_pred             cCccEEEECCchhh-------HhHH-HHHHhccCCCccEEEEEecchhHh--HHHHHhhhccccEEEEecHHhHHHHhhH
Q 004942          310 MKADLVIAGSAVCA-------TWID-QYITRFPAGGSQVVWWIMENRREY--FDRAKLVLDRVKLLVFLSESQTKQWLTW  379 (722)
Q Consensus       310 ~k~DlVia~Sav~~-------~wi~-~~i~~~~~g~~~ivw~I~e~r~~y--f~~~k~~l~rvk~li~lS~~~~~~~~~~  379 (722)
                      .++|+|+.+.....       .++. ..+.+.. +.   .+.+......+  +.+..........++..++.....   +
T Consensus        78 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  150 (370)
T d2iw1a1          78 HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK-GF---LYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIAD---F  150 (370)
T ss_dssp             SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC-CH---HHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHH---H
T ss_pred             cccceeeecccCchHHHHHHhhcccceeeeeec-Cc---cccccchhchhHHHHHHHHhhccCceEEEecHHHHHH---H
Confidence            78999987642110       0000 0111100 00   00000000111  111111112355666666664332   1


Q ss_pred             HHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHH
Q 004942          380 CEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL  459 (722)
Q Consensus       380 ~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~  459 (722)
                      ..    ..+..+           ..+.+||||+|++.+.+.....    .++..|+.+|++++.++|+++|++.+.||++
T Consensus       151 ~~----~~~~~~-----------~~i~vi~~gv~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~  211 (370)
T d2iw1a1         151 QK----HYQTEP-----------ERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVD  211 (370)
T ss_dssp             HH----HHCCCG-----------GGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHH
T ss_pred             HH----hcCCCc-----------ceEEEEEeecccccccccCchh----hhhhhhhccCCCccceEEEEEeccccccchh
Confidence            11    112111           2358999999987765543321    2477899999999999999999999999999


Q ss_pred             HHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCC
Q 004942          460 LLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSP  539 (722)
Q Consensus       460 ~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (722)
                      .+++|++.+.++.+.                                                                 
T Consensus       212 ~li~a~~~l~~~~~~-----------------------------------------------------------------  226 (370)
T d2iw1a1         212 RSIEALASLPESLRH-----------------------------------------------------------------  226 (370)
T ss_dssp             HHHHHHHTSCHHHHH-----------------------------------------------------------------
T ss_pred             hhccccccccccccc-----------------------------------------------------------------
Confidence            999999998765443                                                                 


Q ss_pred             CcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHH
Q 004942          540 SLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVAS  619 (722)
Q Consensus       540 ~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~  619 (722)
                                          ..++++|.++..+.++.++...                     ++.+++.|+|.++++.+
T Consensus       227 --------------------~~~~ii~g~~~~~~~~~~~~~~---------------------~~~~~v~~~g~~~~~~~  265 (370)
T d2iw1a1         227 --------------------NTLLFVVGQDKPRKFEALAEKL---------------------GVRSNVHFFSGRNDVSE  265 (370)
T ss_dssp             --------------------TEEEEEESSSCCHHHHHHHHHH---------------------TCGGGEEEESCCSCHHH
T ss_pred             --------------------ceeeeccccccccccccccccc---------------------ccccccccccccccccc
Confidence                                1244445454445555555322                     67789999999999999


Q ss_pred             HHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEE-CCCCccHHHHHHHHHHhhcCHHHHH
Q 004942          620 LYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH-PPGHPGAQVLAQNLRYLLKNPSVRE  698 (722)
Q Consensus       620 lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLv-p~~d~~~e~LA~aI~~LL~np~~r~  698 (722)
                      +|++||++|+||.  .|+||++++||||||+|||+|+.||.+|++.++.+|+++ +++|+  ++|+++|.++++||+.++
T Consensus       266 ~~~~adv~v~ps~--~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~~d~--~~la~~i~~ll~d~~~~~  341 (370)
T d2iw1a1         266 LMAAADLLLHPAY--QEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQ--EQLNEVLRKALTQSPLRM  341 (370)
T ss_dssp             HHHHCSEEEECCS--CCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCH--HHHHHHHHHHHHCHHHHH
T ss_pred             ccccccccccccc--cccccceeeecccCCeeEEEeCCCChHHHhcCCCceEEEcCCCCH--HHHHHHHHHHHcCHHHHH
Confidence            9999999999997  899999999999999999999999999999999999766 56787  999999999999999999


Q ss_pred             HHHHHHHHHHHhh---cHHHHHHH
Q 004942          699 RMAMEGRKKSNGL---AERHSLGR  719 (722)
Q Consensus       699 ~mg~~grk~ve~~---~~~~~~~~  719 (722)
                      +|+++|++.++.|   ++.+.+.+
T Consensus       342 ~~~~~ar~~~~~~~~~~~~~~~~~  365 (370)
T d2iw1a1         342 AWAENARHYADTQDLYSLPEKAAD  365 (370)
T ss_dssp             HHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHH
Confidence            9999999999875   44444443

PyMOL of d2iw1a1

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}	Back information, alignment and structure

>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure