Citrus Sinensis ID: 004952
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P17 | 727 | Probable acyl-activating | yes | no | 0.995 | 0.988 | 0.697 | 0.0 | |
| F4KBF3 | 721 | Probable acyl-activating | no | no | 0.970 | 0.972 | 0.501 | 0.0 | |
| A1U2S9 | 649 | Acetyl-coenzyme A synthet | yes | no | 0.771 | 0.858 | 0.260 | 8e-40 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.786 | 0.869 | 0.260 | 1e-39 | |
| A8FUF1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.786 | 0.873 | 0.258 | 8e-39 | |
| Q54Z60 | 674 | Acetyl-coenzyme A synthet | yes | no | 0.814 | 0.872 | 0.260 | 9e-39 | |
| A9KY56 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.789 | 0.876 | 0.248 | 4e-38 | |
| A6WM52 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.789 | 0.876 | 0.248 | 8e-38 | |
| A3D3E8 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.789 | 0.876 | 0.248 | 8e-38 | |
| Q8Z1R0 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.721 | 0.799 | 0.271 | 9e-38 |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/730 (69%), Positives = 601/730 (82%), Gaps = 11/730 (1%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIK 713
VLK+GF Q ++LKM FS+ IQ LNPLFKV VPEFPRTAS+KLLRRVLRDQIK
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRVLRDQIK 717
Query: 714 HE-LSVRSRI 722
E LS+RSRI
Sbjct: 718 QELLSLRSRI 727
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/722 (50%), Positives = 475/722 (65%), Gaps = 21/722 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
Y +V+ A AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKPAGAYT 352
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 353 NILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASL 412
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F ST
Sbjct: 413 INGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGST 472
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L IL
Sbjct: 473 GEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFIL 532
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +R
Sbjct: 533 DEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFER 592
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 593 TSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIA 652
Query: 660 VVLKKGFTSQPD--KLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQI 712
VV K S PD LK F+ IQ KLNPLFKV +P PRTA+NK++RRVLR Q+
Sbjct: 653 VVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQL 712
Query: 713 KH 714
Sbjct: 713 TQ 714
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 164/630 (26%), Positives = 268/630 (42%), Gaps = 73/630 (11%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + + +VE P +W K I + F + D + S W VLN +
Sbjct: 22 SQYEEMYRQSVEDPNTFWGEHGKRIDWIKPFTKVKNSTYDYNNLSIK---WFEDGVLNAS 78
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDA 235
CL H + + AI++ D D S +TY+EL E+ AN L D KGD
Sbjct: 79 ANCL--DRHLEQRGDQTAIIFEGD--DPSVSRNVTYRELYEETCKFANVLKDQGVKKGDV 134
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM V + LA G + + F+ +A R+ K++ + T D LRGGR
Sbjct: 135 VTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRFVITADEGLRGGR 194
Query: 296 KFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDFL--SSVDYHPRP 345
PL V A K IV+ GND +P E +DL ++D + +S + P P
Sbjct: 195 AIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDLMKNASAECQPEP 253
Query: 346 -NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 403
N P++ +L++SG+TG PK + T + + ++ D GDVY
Sbjct: 254 MNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYVFDYHDGDVYWCT 305
Query: 404 TNLGWVMG-PVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ GWV G IL+ NGA L++G P G+ V V +L T P+ ++A
Sbjct: 306 ADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVNILYTAPTAIRAL 365
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517
+ +C++G ++ S GE ++ + W WY+ +I + S I +
Sbjct: 366 MAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVIGN------SKCPIVDT 413
Query: 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-------------GEVGLFPLYLG 564
Q + G + A + +P+ QP + G + + + G
Sbjct: 414 WWQTETGGILISPLPGAVDLKPGSATLPFFGVQPALVDNEGNILEGKTEGNLVILDSWPG 473
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
R + DHE YKGM GD +R GY + GR DD +N+ G + +
Sbjct: 474 QM-RTIYGDHERFVQTYFSTYKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 530
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
E+E D+ + AA+ P + + ++V L +G D+LK + ++ +
Sbjct: 531 AEVESALVAHDK--VAEAAVVGYPHDIKGQGIYVYVTLVQG-EEPSDELKKELVQWVRKE 587
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ P+ + P P+T S K++RR+LR
Sbjct: 588 IGPIASPDVIQWAPGLPKTRSGKIMRRILR 617
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Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 167/641 (26%), Positives = 276/641 (43%), Gaps = 73/641 (11%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG- 165
P++ D T ++Q+ +V +P+ +W + I + P + +T H
Sbjct: 11 PEVAATTLTDEATYKAMYQQ-SVINPDGFWREQAQRIDWI---KPFTKVKQTSFDDHHVD 66
Query: 166 -TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + +AI+W D D S +TY+EL EQV AN
Sbjct: 67 IKWFADGTLNVSSNCL--DRHLEERGDQLAIIWEGD--DPSEHRNITYRELHEQVCKFAN 122
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
AL +GD + I MPM AV+ LA G + + F+ +A R+ K+K
Sbjct: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
Query: 284 IFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336
+ T D +RGGR+ PL + V ++ K IV G D+ + +D+ ++D +
Sbjct: 183 VITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAWH-QHRDIWYEDLM 241
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLK 395
H P + + IL++SG+TG+PK + T + A + D +
Sbjct: 242 KVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYR 296
Query: 396 VGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLG 450
G+VY ++GWV G I++ NGAT L++G P + R K V V +L
Sbjct: 297 PGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILY 355
Query: 451 TVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGG 506
T P+ ++A +EG D + +R S GE N + W I+++
Sbjct: 356 TAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEPINPEAWNWYYKTVGKERCPIVDTWWQ 415
Query: 507 TELSSAYIQ----------GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556
TE I GS +P FG G +I D G +
Sbjct: 416 TETGGILISPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI----------DGAAEGNL 464
Query: 557 GLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
+ + G S R L DH+ + YF+ ++GM GD +R GY + GR DD
Sbjct: 465 VILDSWPGQS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGARRDEDGYYWITGRVDD 518
Query: 614 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
+N+ G + + EIE A + E A + V P + + ++V L G + ++L
Sbjct: 519 VLNVSGHRMGTAEIESAM-VAHSKVAEAAVVGV-PHDIKGQGIYVYVTLNAGIEAS-EQL 575
Query: 674 KMIFSKAIQSKLNPL-----FKVVPEFPRTASNKLLRRVLR 709
++ ++ ++ P+ + P P+T S K++RR+LR
Sbjct: 576 RLELKNWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 616
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Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 162/627 (25%), Positives = 270/627 (43%), Gaps = 59/627 (9%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECC 179
+++Q+ ++ +PE +W + I + P + +T H + W LN + C
Sbjct: 26 KMYQE-SIVNPEGFWREHGQRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASANC 81
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
L H K+ + VAI+W D D +TY EL V ANAL + +GD + +
Sbjct: 82 L--DRHLEKDSDKVAIIWEGD--DAKDQRTITYGELHSDVCKFANALRSQGVRRGDIVTV 137
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM A ++ LA G V + F+ IA+R+ K+K I T D +RGGR P
Sbjct: 138 YMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGVRGGRIIP 197
Query: 299 LYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
L + + A K IVL G DV + +D+ W+ + + H P
Sbjct: 198 LKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCIPEEMG-- 254
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 410
+ + +L++SG+TG PK + T + A ++ D K G+VY ++GW+
Sbjct: 255 ---AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCTADVGWIT 311
Query: 411 G-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNC 464
G +++ NGAT+ +++G P G+ V V +L T P+L++A
Sbjct: 312 GHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRALMAEGKEQ 371
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQ 522
D + +R S GE ++ + W WYN +I E C + G +L
Sbjct: 372 FADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHCPIVDTWWQTETGGILISP 425
Query: 523 AFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575
GA T +A ++D G D G + + + G R + DH+
Sbjct: 426 LPGATDTKPGSATRPFFGVQPALVDNMGNII--DGATEGNLVILDSWPGQM-RTVFGDHD 482
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
++GM GD KR GY + GR DD +N+ G + + E+E A
Sbjct: 483 RFALTYFKTFRGMYFT--GDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VAH 539
Query: 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFK 690
E + E A + P + + +V L KG T + ++L+ K ++ ++ L +
Sbjct: 540 EHVAEAAVVGY-PHDIKGQGIYAYVTLTKG-TIETEELRQELRKWVRKEIGALATPDLIQ 597
Query: 691 VVPEFPRTASNKLLRRVLRDQIKHELS 717
P+T S K++RR LR +E++
Sbjct: 598 WAGGLPKTRSGKIMRRFLRKIAANEVT 624
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Shewanella sediminis (strain HAW-EB3) (taxid: 425104) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q54Z60|ACSA_DICDI Acetyl-coenzyme A synthetase OS=Dictyostelium discoideum GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 168/646 (26%), Positives = 284/646 (43%), Gaps = 58/646 (8%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDY--TTVQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSK---VLGAAPLKAIVLPAIGNDVGIPLREQDLS---WKDFLSSV 339
T D LRGGR PL K V+ L VL + + G P + S W D + +
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVL--VFKNTGRPTITFNPSIDIWAD-EAML 251
Query: 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD 398
D+ P Y PV+ + + IL++SG+TG PK + TQ + A ++ D D
Sbjct: 252 DHRP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSD 308
Query: 399 VYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPS 454
VY ++GW+ G I++ NGAT +++G+PL + ++ VQ +T T P+
Sbjct: 309 VYACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPT 368
Query: 455 LVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELS 510
+++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 369 AIRSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG 428
Query: 511 SAYIQGSLLQPQAFGAFSTATMTAG-------LVILD----ECGVPYPDDQPCVGEVGLF 559
G L+ P G ST +A L +LD E PD C G+
Sbjct: 429 -----GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVL 482
Query: 560 PL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
+ + G + R + H M YKG GD +K GY ++GR DD +N
Sbjct: 483 AISKPWPGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVIN 539
Query: 617 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 676
+ G + + E+E SI AA+ P + ++ F LK+G+ + M+
Sbjct: 540 VSGHRLGTAELESAL--VGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMM 597
Query: 677 FSKAIQSKLNP-----LFKVVPEFPRTASNKLLRRVLRDQIKHELS 717
K +++ + P + + P P+T S K++RR+LR HE S
Sbjct: 598 LKKEVRNVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESS 643
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 156/628 (24%), Positives = 268/628 (42%), Gaps = 58/628 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL +V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHAEVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + ++D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LF 689
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 690 KVVPEFPRTASNKLLRRVLRDQIKHELS 717
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS195) (taxid: 399599) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 156/628 (24%), Positives = 266/628 (42%), Gaps = 58/628 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LF 689
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 690 KVVPEFPRTASNKLLRRVLRDQIKHELS 717
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS185) (taxid: 402882) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 156/628 (24%), Positives = 266/628 (42%), Gaps = 58/628 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LF 689
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 690 KVVPEFPRTASNKLLRRVLRDQIKHELS 717
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 155/570 (27%), Positives = 236/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ IA R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAIAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL GND+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhi (taxid: 90370) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| 225435726 | 727 | PREDICTED: acetyl-coenzyme A synthetase | 1.0 | 0.993 | 0.755 | 0.0 | |
| 380042388 | 727 | acyl-activating enzyme 14 [Cannabis sati | 0.994 | 0.987 | 0.757 | 0.0 | |
| 380042368 | 723 | acyl-activating enzyme 4, partial [Canna | 0.993 | 0.991 | 0.734 | 0.0 | |
| 380042386 | 715 | acyl-activating enzyme 13 [Cannabis sati | 0.979 | 0.988 | 0.717 | 0.0 | |
| 449503439 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 0.993 | 0.691 | 0.0 | |
| 449448834 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 0.993 | 0.691 | 0.0 | |
| 297746452 | 685 | unnamed protein product [Vitis vinifera] | 0.941 | 0.992 | 0.704 | 0.0 | |
| 449503441 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 0.993 | 0.682 | 0.0 | |
| 449448832 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 0.993 | 0.680 | 0.0 | |
| 356525251 | 728 | PREDICTED: acetyl-coenzyme A synthetase- | 0.997 | 0.989 | 0.702 | 0.0 |
| >gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/727 (75%), Positives = 634/727 (87%), Gaps = 5/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF++ILK + ++G D E+WRE+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFERILKAAVGGARGSDPSEVWREVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLH+LV++SVY +WD SI+GPPLYWFPSL +S TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHRLVFHSVYAEWDESIRGPPLYWFPSLYESMHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
+ LFQKF+V++ E YW + LKE+SV+F AP+CILD TDKSKHGGTWLPG+VLNIAECCL
Sbjct: 121 YSLFQKFSVQNLEVYWSMVLKELSVLFHRAPRCILDTTDKSKHGGTWLPGAVLNIAECCL 180
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LP ++ RK DN++A+VWR++ D+S VN +T KELREQVM+VAN LD FSKGDAIAIDM
Sbjct: 181 LPVSYPRKHDNSLAVVWRDEGNDDSPVNRLTLKELREQVMMVANVLDATFSKGDAIAIDM 240
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDFI+RGGRKFPLY
Sbjct: 241 PMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDFIVRGGRKFPLY 300
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS D+ PRPN YSPVY P+DAV N
Sbjct: 301 SRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYSPVYQPIDAVTN 360
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWVMGP IL++SFL
Sbjct: 361 ILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWVMGPTILYASFL 420
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 421 TGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 480
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A+Y IIE CGGTEL+S+YIQGS+LQPQAFG FSTA MT G VILD
Sbjct: 481 ETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFSTAAMTTGFVILD 540
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+D LLNADHEEVYF+GMPMYKGM LRRHGDIIKRT
Sbjct: 541 ENGVPYPDDQPCVGEVGLFPLIMGATDWLLNADHEEVYFKGMPMYKGMHLRRHGDIIKRT 600
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADES+LE+AAIS +P GGPE+LV+FV
Sbjct: 601 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESVLESAAISTAPLNGGPELLVVFV 660
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VLKKG+ +P++LKM FSKAIQ LNPLFKV VPEFPRTASNK+LRRVLRDQIKHE
Sbjct: 661 VLKKGYDCEPNELKMKFSKAIQRNLNPLFKVNFVKIVPEFPRTASNKILRRVLRDQIKHE 720
Query: 716 LSVRSRI 722
LSVRSRI
Sbjct: 721 LSVRSRI 727
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/726 (75%), Positives = 623/726 (85%), Gaps = 8/726 (1%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPWHPHG
Sbjct: 4 KSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPWHPHG 63
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 64 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 123
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLNIAECCLL
Sbjct: 124 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNIAECCLL 183
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 184 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 243
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 244 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 303
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 304 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 361
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 362 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 421
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 422 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 481
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 482 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 541
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+GMP+YKGM LRRHGDIIKRTV
Sbjct: 542 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKGMPLYKGMRLRRHGDIIKRTV 601
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 602 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 661
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHEL 716
LK G+ S+ + L+ FSKAIQS LNPLFKV VPEFPRTASNKLLRRVLRDQIKHEL
Sbjct: 662 LKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKLLRRVLRDQIKHEL 721
Query: 717 SVRSRI 722
S SRI
Sbjct: 722 SAHSRI 727
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/726 (73%), Positives = 607/726 (83%), Gaps = 9/726 (1%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+ LKPWHPHG
Sbjct: 1 NSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRALKPWHPHG 60
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 61 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 120
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLN+AECCLL
Sbjct: 121 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNVAECCLL 180
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 181 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 240
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 241 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 300
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 301 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 358
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 359 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 418
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 419 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 478
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 479 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 538
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+ Y C +RTV
Sbjct: 539 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKEC-HYTKECASETWRYYQRTV 597
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 598 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 657
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHEL 716
LK G+ S+ + L+ FSKAIQS LNPLFKV VPEFPRTASNKLLRRVLRDQIKHEL
Sbjct: 658 LKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKLLRRVLRDQIKHEL 717
Query: 717 SVRSRI 722
S SRI
Sbjct: 718 SAHSRI 723
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/725 (71%), Positives = 604/725 (83%), Gaps = 18/725 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGV+DL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPW
Sbjct: 4 KSISEVGVDDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPW---- 59
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
SVY WD S KGPP YWFPSL SK TNLG +E HGP LLG YKDPITS+
Sbjct: 60 -------SVYAHWDVSSKGPPPYWFPSLYHSKDTNLGRLMEKHGPSLLGPLYKDPITSYS 112
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
LFQKF+VEHPE YW IALKE+SV F+E PKCILD++DKSKHGG+WLPG+VLNIAECCLLP
Sbjct: 113 LFQKFSVEHPEVYWSIALKELSVSFQEEPKCILDKSDKSKHGGSWLPGAVLNIAECCLLP 172
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
+++ RK+D+++AIVWR++ D+S+VNL+T K+LREQV+ VA +LD MFSKGDAIA+DMPM
Sbjct: 173 TSYPRKDDDSLAIVWRDEGSDDSSVNLITLKQLREQVISVAKSLDAMFSKGDAIAMDMPM 232
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
T AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+
Sbjct: 233 TANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQDFILRGGRKFPLYSR 292
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV R YSP Y PVD+++NIL
Sbjct: 293 VVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--YSPCYQPVDSLINIL 350
Query: 363 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
FSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW +GP ILF+ FL+G
Sbjct: 351 FSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGWALGPFILFTCFLSG 410
Query: 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
A LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GLDWTKI+SFASTGET
Sbjct: 411 AVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGLDWTKIKSFASTGET 470
Query: 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
SNVDDDLWLSS+A+Y +IE CGGTEL+S+YIQGSLLQPQAFGAF+TATMT VI+DE
Sbjct: 471 SNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEH 530
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PYPDDQ C GEVGL PLYLGASDRLLNADHEEVYF+GMP+YKGM LRRHGDII RTVG
Sbjct: 531 GNPYPDDQACTGEVGLIPLYLGASDRLLNADHEEVYFKGMPLYKGMRLRRHGDIINRTVG 590
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
GY IVQGRADDTMNLGGIKTSS EIE VCD+AD+SILETAA+SVSP GGGPE LV+FVVL
Sbjct: 591 GYFIVQGRADDTMNLGGIKTSSFEIEHVCDRADDSILETAAVSVSPIGGGPEQLVMFVVL 650
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHELS 717
K G+ ++ + L+ FSKAIQS LNPLFKV V EFPRT SNKLLRRVLRDQ+ E S
Sbjct: 651 KNGYDAEAENLRTKFSKAIQSNLNPLFKVTAVKIVHEFPRTMSNKLLRRVLRDQLNREFS 710
Query: 718 VRSRI 722
++S+I
Sbjct: 711 IQSKI 715
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503439|ref|XP_004162003.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/727 (69%), Positives = 600/727 (82%), Gaps = 7/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH L+YYSVY +W+ S GPP YWFPS++QSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHHLLYYSVYANWNISSNGPPPYWFPSINQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSN--VRWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQLS IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQLSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGHGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYFVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VL+K + P +LK+ FSKAIQ LNPLFKV VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 716 LSVRSRI 722
L++RS++
Sbjct: 719 LALRSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448834|ref|XP_004142170.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/727 (69%), Positives = 601/727 (82%), Gaps = 7/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSNV--RWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGYGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VL+K + P +LK+ FSKAIQ LNPLFKV VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 716 LSVRSRI 722
L++RS++
Sbjct: 719 LALRSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746452|emb|CBI16508.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/727 (70%), Positives = 590/727 (81%), Gaps = 47/727 (6%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF +ILK + ++G D E+W E+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFKRILKAAVGGARGSDPSEVWCEVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLHQLV++SVY +WD S +GPPLYWFPSL +SK TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHQLVFHSVYAEWDESTRGPPLYWFPSLYESKHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
LFQKF+V++PE YW + LKE+S
Sbjct: 121 HSLFQKFSVQNPEVYWSMVLKELS------------------------------------ 144
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+K DN++A+VWR+ D+S VN MT KELREQVMLVANALD F+KGDAIAIDM
Sbjct: 145 ------KKHDNSLAVVWRDKGNDDSPVNQMTLKELREQVMLVANALDATFTKGDAIAIDM 198
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EI TRLRVSKAKGIFTQDFI+R GRKFPLY
Sbjct: 199 PMTVYAVIIYLAIVLAGFVVVSIADSFAAKEITTRLRVSKAKGIFTQDFIVRRGRKFPLY 258
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K I+LPAIG DV + LREQDLSWKDFLS D+ PRPNYYSPVY P+DAV N
Sbjct: 259 SRVVEAAPHKVILLPAIGKDVNVQLREQDLSWKDFLSRADHLPRPNYYSPVYQPIDAVTN 318
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR A+ WA +++VGDV CWPTNLGW+MGP I+++SFL
Sbjct: 319 ILFSSGTTGDPKAIPWTQVSPIRSAADAWAQSNIQVGDVLCWPTNLGWMMGPFIIYASFL 378
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVT+LGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 379 TGAALALYHGSPLDRGFGKFVQDAGVTILGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 438
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A Y IIE CGGTEL+S+YIQGS+ QPQAFGAFS+ MT G VILD
Sbjct: 439 ETSNVDDDLWLSSRAHYKPIIECCGGTELASSYIQGSMFQPQAFGAFSSTAMTTGFVILD 498
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+DRLLNADHEEVYF+GMP+YKGM LR+HGDIIKRT
Sbjct: 499 ENGVPYPDDQPCVGEVGLFPLIMGATDRLLNADHEEVYFKGMPIYKGMHLRKHGDIIKRT 558
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADESILE+AAIS +P GGPE+LV+FV
Sbjct: 559 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESILESAAISTAPLNGGPEMLVVFV 618
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VLKKG+ +PD+LKM FSKAIQ LNPLFKV VPEFPRTASNK+LRRVLRDQIKHE
Sbjct: 619 VLKKGYNCEPDELKMKFSKAIQRNLNPLFKVSFVKIVPEFPRTASNKILRRVLRDQIKHE 678
Query: 716 LSVRSRI 722
LSV SRI
Sbjct: 679 LSVWSRI 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503441|ref|XP_004162004.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/727 (68%), Positives = 607/727 (83%), Gaps = 7/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GLKL EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLKLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VL++G+ P +LK+ FSKAIQS LNPLFKV VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 716 LSVRSRI 722
++++S++
Sbjct: 719 IALQSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448832|ref|XP_004142169.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/727 (68%), Positives = 606/727 (83%), Gaps = 7/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIKHE 715
VL++G+ P +LK+ FSKAIQS LNPLFKV VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 716 LSVRSRI 722
++++S++
Sbjct: 719 IALQSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525251|ref|XP_003531240.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/730 (70%), Positives = 600/730 (82%), Gaps = 10/730 (1%)
Query: 1 MGKNIREVGVEDLMKVG-LKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWH 59
M K++RE+GV+DL+ G L L EA E +L ++S S+ IW ++V R++LKP
Sbjct: 1 MEKSVRELGVQDLVNAGGLTLAEANELYHVLTDILSQSQ--SPSHIWHQIVTRRLLKPSF 58
Query: 60 PHGLHQLVYYSVYND-WDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPI 118
PH LHQL+YYSVY+ + + P YWFPS++QSK TNLG +E H PKLLG +YKDPI
Sbjct: 59 PHSLHQLLYYSVYHSAFHSQHASLPHYWFPSIEQSKRTNLGRLMETHAPKLLGASYKDPI 118
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILD-RTDKSKHGGTWLPGSVLNIAE 177
TSF LF KF+V+HP+ YW + LKE+SV F E PKCILD +D SKHGGTWLPGSVLNIA+
Sbjct: 119 TSFHLFHKFSVQHPQVYWSLILKELSVSFVEPPKCILDTSSDPSKHGGTWLPGSVLNIAD 178
Query: 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIA 237
CCL P+ + K D+T+A+VWR++ D+S VN MT K+LR QVMLVANA+D FSKGDAIA
Sbjct: 179 CCLQPTPYPHKTDDTLAVVWRDEGFDDSEVNGMTLKQLRHQVMLVANAIDATFSKGDAIA 238
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
IDM MTV AVIIYLAI+LAG VVVSIADSFA +EIATRLRVSKAKGIFTQDFI RGGRKF
Sbjct: 239 IDMQMTVNAVIIYLAIVLAGCVVVSIADSFAPKEIATRLRVSKAKGIFTQDFISRGGRKF 298
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
PLYS+V+ AA K IVLP IG+D+G+ LR+ D+SWK FLSS HPR ++YSP+ +D
Sbjct: 299 PLYSRVIEAAACKVIVLPVIGDDLGVQLRDCDISWKVFLSSSRQHPRSHHYSPIIQSIDT 358
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWTQLS IR A+ WA ID++ GDVYCWPTNLGWVMGP +++S
Sbjct: 359 VTNILFSSGTTGEPKAIPWTQLSPIRSAADAWAFIDIQPGDVYCWPTNLGWVMGPTLIYS 418
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
FL+GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGLDWTKI+ F
Sbjct: 419 CFLSGATLALYHGSPLGHGFGKFVQDAGVTILGTVPSLVKTWKSTQCMEGLDWTKIKIFC 478
Query: 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV 537
STGETSNVDDDLWLSSK++Y IIE CGGTEL+S+YI GS LQPQAFGAFSTA+MT GLV
Sbjct: 479 STGETSNVDDDLWLSSKSYYKPIIECCGGTELASSYIIGSPLQPQAFGAFSTASMTTGLV 538
Query: 538 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597
ILDE GVPYP+D CVGEVGLFP+Y+GA+DRLLNAD+EEVYF+GMP+YKG LRRHGDII
Sbjct: 539 ILDENGVPYPEDVACVGEVGLFPIYMGATDRLLNADNEEVYFKGMPIYKGKVLRRHGDII 598
Query: 598 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657
KRTVGG+ +VQGRADDTMN+GGIKTSSVEIERVCD+ADE ILETAAISV+PA GGPE LV
Sbjct: 599 KRTVGGHFVVQGRADDTMNIGGIKTSSVEIERVCDRADEGILETAAISVAPANGGPEQLV 658
Query: 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQI 712
IF VLKKG+ S + LK FSKAIQS LNPLFKV VP+FPRTASNKLLRRVLRDQ+
Sbjct: 659 IFAVLKKGYNSNAETLKRKFSKAIQSNLNPLFKVSLVKIVPDFPRTASNKLLRRVLRDQM 718
Query: 713 KHELSVRSRI 722
K ELS++SR+
Sbjct: 719 KRELSIQSRL 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.995 | 0.988 | 0.697 | 1.4e-279 | |
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.966 | 0.968 | 0.506 | 9.4e-185 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.818 | 0.914 | 0.279 | 1.1e-48 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.800 | 0.891 | 0.257 | 9.1e-36 | |
| ZFIN|ZDB-GENE-050320-139 | 693 | acss1 "acyl-CoA synthetase sho | 0.818 | 0.852 | 0.257 | 3e-35 | |
| MGI|MGI:1915988 | 682 | Acss1 "acyl-CoA synthetase sho | 0.768 | 0.813 | 0.264 | 3.6e-35 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.785 | 0.872 | 0.252 | 6.1e-35 | |
| UNIPROTKB|F1SAS2 | 672 | ACSS1 "Uncharacterized protein | 0.800 | 0.860 | 0.270 | 2.7e-34 | |
| DICTYBASE|DDB_G0277815 | 674 | acsA "acetyl-CoA synthetase" [ | 0.777 | 0.832 | 0.253 | 2.8e-34 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.724 | 0.802 | 0.265 | 3.9e-34 |
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2687 (950.9 bits), Expect = 1.4e-279, P = 1.4e-279
Identities = 509/730 (69%), Positives = 601/730 (82%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQIK 713
VLK+GF Q ++LKM FS+ IQ LNPLFKV VPEFPRTAS+KLLRRVLRDQIK
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRVLRDQIK 717
Query: 714 HEL-SVRSRI 722
EL S+RSRI
Sbjct: 718 QELLSLRSRI 727
|
|
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1792 (635.9 bits), Expect = 9.4e-185, P = 9.4e-185
Identities = 365/721 (50%), Positives = 478/721 (66%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358
Y +V+ A APL AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEKPAGAY 351
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 352 TNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYAS 411
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F S
Sbjct: 412 LINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGS 471
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI 538
TGE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L I
Sbjct: 472 TGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFI 531
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 598
LDE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +
Sbjct: 532 LDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFE 591
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
RT GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 592 RTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVI 651
Query: 659 FVVLKKGFTSQPDK--LKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQ 711
VV K S PD LK F+ IQ KLNPLFKV +P PRTA+NK++RRVLR Q
Sbjct: 652 AVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQ 711
Query: 712 I 712
+
Sbjct: 712 L 712
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 180/643 (27%), Positives = 297/643 (46%)
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISV 145
WFP+ + + T L + K LG Y+D + F ++E +W A K +
Sbjct: 6 WFPTEEYKEKTRLYGWM-----KSLG--YED----YETFYNKSIEETAWFWGEAEKVVGY 54
Query: 146 VFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205
+ + +LD + + W G N+ E L + +D T + +
Sbjct: 55 QWMKPYTEVLDLQNGTPFA-QWYNGGTCNVVESVL---SRWLADDETRTQPALQYEGENG 110
Query: 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
TY+EL V AN L KGD + I MPM V+ LA++ G ++ I
Sbjct: 111 TSKSFTYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIF 170
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGN 319
FA+ + TR++ + +K I T D R G+ L +V A P K +++ GN
Sbjct: 171 SGFASDAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGN 230
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379
D P D SW S+++ +P ++ + D ++ ++++SGTTG+PK T
Sbjct: 231 DF-TP-HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHA 282
Query: 380 S-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LE 434
++ + +++K GD W T++GW+MGP +LF S +NGAT+ +Y+G P +
Sbjct: 283 GFPLKAAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKAD 342
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492
R + + V +T LG P+L++A + + + FASTGE N D +WL
Sbjct: 343 RLW-ETVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLF 401
Query: 493 SKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
+ I GGTE+S L++P A +F+ + V+LD+ G P D+
Sbjct: 402 ETVGKSNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDE- 460
Query: 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
VGE+ L ++G + D E ++ + HGD + YII GR
Sbjct: 461 --VGELCLEKPWVGMTKSFWE-DDERYVNTYWSRFENKWV--HGDWVVYDGEQYIIT-GR 514
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG--FTS 668
+DDT+N+ G + E E + + ++ ++E AAI V G EV FVVL+ FT
Sbjct: 515 SDDTLNIAGKRIGPAEYESILVKHND-VIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTG 572
Query: 669 QPDK-LKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709
+ K L + + I L P VV + P+T ++K++RRV++
Sbjct: 573 ELKKELMSLVNSHIGKALCPKDIHVVEDLPKTRNSKVMRRVIK 615
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 9.1e-36, P = 9.1e-36
Identities = 161/626 (25%), Positives = 261/626 (41%)
Query: 108 KLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTW 167
K + D T +++K ++E P+ +W KE ++ P + + D W
Sbjct: 13 KAKAHTHIDAATYDAMYKK-SIEQPDEFWGEQAKEFIDWYK--PWDSVSKVDLKNSEINW 69
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWR-EDRCDESAVNLMTYKELREQVMLVANAL 226
G LN++ C+ H + N AI++ +D D+S V TY+EL + V AN L
Sbjct: 70 FSGGKLNVSYNCI--DRHLATKANDTAIIFEGDDPNDDSKV---TYQELHDHVCRFANLL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD + I MPM LA G + + F+ I R+ + K +
Sbjct: 125 KERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
T D LRGG++ PL S V A I P + + + + D++W D + ++Y
Sbjct: 185 TADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAV 239
Query: 346 NYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
S + P +DA + +L++SG+TG PK + T I A ++ D K G+VY
Sbjct: 240 AKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVY 299
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLV 456
+ GW+ G I + NGAT +++G P G+F Q V V T P+ +
Sbjct: 300 WCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAI 359
Query: 457 KAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSA 512
+A + + + D + +R + GE N + W WY ++ +C +
Sbjct: 360 RALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVVGKSNCPIVDTWWQ 413
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-GE-VGLFPLYLGASDRL- 569
G +L GA AG + D + GE GL + +L
Sbjct: 414 TETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGLLVMTASWPGQLR 473
Query: 570 -LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
+ DH Y + Y G GD KR GY + GR DD +N+ G + + EIE
Sbjct: 474 TVYGDHNRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 531
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ E A + G V +V L G ++ D+L + + + +L
Sbjct: 532 SAL-VLHPAVAEAAVVGYPHEIKGQGVYC-YVTLM-GNATESDELNVELREFVAKELGRF 588
Query: 689 FKV-----VPEFPRTASNKLLRRVLR 709
K P P+T S K++RR+LR
Sbjct: 589 AKPDYIQWSPGLPKTRSGKIMRRILR 614
|
|
| ZFIN|ZDB-GENE-050320-139 acss1 "acyl-CoA synthetase short-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 166/645 (25%), Positives = 297/645 (46%)
Query: 89 SLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFR 148
SL +S ++ L H L GR Y D L++ +V+ PE +W KE + +
Sbjct: 40 SLSRSSISAAQLDLSSH---LSGRNYAD------LYE-LSVKDPENFWGSIAKE-RLAWT 88
Query: 149 EAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVN 208
+ + D D S W G LN++ CL H + + VA++W +D +
Sbjct: 89 KPFDQVSD-CDISSGKINWFLGGQLNVSVNCL--DVHVANDPSRVALIWEKD--EPGTEE 143
Query: 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267
+TY+EL E +AN L + +G+ +AI MP++ AV LA G V + F
Sbjct: 144 RITYRELLEMTCRLANTLKSHGVQRGERVAIYMPVSPMAVAAMLACARIGAVHTVVFAGF 203
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---KVLGAAPLKAIVLPAIGNDVGIP 324
++ +A R++ ++ K + T + +RGGR F L S K + + P V A + +P
Sbjct: 204 SSEALAGRIQDAQCKFVITCNQGVRGGRVFDLKSTVDKAVKSCPSVRHVFVAKRTNNSVP 263
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 384
+ + D+ ++ ++ P P+ + + ++ +L++SG+TG+PK I TQ +
Sbjct: 264 MGKLDIPLEEVMAGQSSECAPE---PMES--EEMLFMLYTSGSTGKPKGIVHTQAGYLLY 318
Query: 385 TAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF-- 440
+ ++ D GDV+ ++GW+ G +++ NGAT L++ +P+ + G++
Sbjct: 319 ASLTHQYVFDYTPGDVFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNPGRYWE 378
Query: 441 -VQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
VQ + P+ ++ + ++ D + +++ AS GE N + W +
Sbjct: 379 TVQRLRINQFYGAPTAIRLLLKYEESWVKKYDRSSLKTLASVGEPINHEAWDWFHNVVGD 438
Query: 498 NA--IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLV--ILDECGVPYPDDQPC 552
++++ TE I +P A + A G+ +L E G +
Sbjct: 439 GRCPLVDTWWQTETGGVCIAPLPAEPGAEIRPAMAMRPFFGIKPELLGEKGQIITGND-V 497
Query: 553 VGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 609
G + + + G + R + DH+ + YF+ P Y+G GD RT GY + G
Sbjct: 498 NGALCISQPWPGMA-RTIFGDHQRFVDAYFK--P-YQGQYFT--GDGAYRTEDGYYQITG 551
Query: 610 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ 669
R DD +N+ G + + EIE D+ + + ETA I + G EV FVVLK+
Sbjct: 552 RMDDVINISGHRLGTAEIEDALDEHPD-VPETAVIGIPHEIKG-EVPFAFVVLKESAAEN 609
Query: 670 P----DKLK-MIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
++L+ ++ SK + + F VV P+T S K++RR+LR
Sbjct: 610 QQAVVNELRHLVASKIAKYAVPDHFLVVKRLPKTRSGKIMRRILR 654
|
|
| MGI|MGI:1915988 Acss1 "acyl-CoA synthetase short-chain family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 3.6e-35, P = 3.6e-35
Identities = 161/608 (26%), Positives = 272/608 (44%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ P A+W ++ ++V+ + D ++ G W G LN++ CL H +K
Sbjct: 60 QEPAAFWGPLARD-TLVWDTPYHTVWDCDFRTGKIG-WFLGGQLNVSVNCL--DQHVQKS 115
Query: 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248
T+A++W D + V + TY+EL E +AN L +GD +AI MP++ AV
Sbjct: 116 PETIALIWERDE-PGTEVRI-TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVA 173
Query: 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA- 307
LA G + + F+A +A R+ +K K + T + LRGGR L K++ A
Sbjct: 174 AMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVVEL-KKIVDEAV 232
Query: 308 ---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P VL A D +P+ D+ + ++ P +P + ++ +L++
Sbjct: 233 KSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAK----EAP-VCTPESMSSEDMLFMLYT 287
Query: 365 SGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNG 422
SG+TG PK + TQ + A + D + GDV+ ++GW+ G +++ NG
Sbjct: 288 SGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYQPGDVFGCVADIGWITGHSYVVYGPLCNG 347
Query: 423 ATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFA 477
AT L++ +P+ G++ VQ + P+ V+ ++ D + +R+
Sbjct: 348 ATTVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLG 407
Query: 478 STGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA- 534
S GE N + WL ++++ TE I +P GA M
Sbjct: 408 SVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGGICIAP---RPSEDGAEILPGMAMR 464
Query: 535 ---GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYK 586
G+V ++DE G + G + + + G + R + DH+ + YFR P Y
Sbjct: 465 PFFGIVPVLMDEKGNVL-EGGDVSGALCISQAWPGMA-RTIYGDHQRFVDAYFRAYPGYY 522
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE-SILETAAIS 645
GD RT GGY + GR DD +N+ G + + EIE AD ++ ETA I
Sbjct: 523 FT-----GDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIEDA--MADHPAVPETAVIG 575
Query: 646 VSPAGGGPEVLVIFVVLKKGFTSQP---DKLKM-IFSKAIQSKLNPLFKVVPEFPRTASN 701
P E F+VLK + + ++LK+ + +K + + VV P+T S
Sbjct: 576 Y-PHDIKGEAAFAFIVLKDNISDENMVVNELKLSVATKIAKYAVPDQILVVKRLPKTRSG 634
Query: 702 KLLRRVLR 709
K++RR+LR
Sbjct: 635 KVMRRLLR 642
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 6.1e-35, P = 6.1e-35
Identities = 158/626 (25%), Positives = 270/626 (43%)
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECCL 180
++Q+ ++ +PE +W K I + P + +T H + W LN + CL
Sbjct: 27 MYQE-SIVNPEGFWREHGKRIDWI---KPYTKIKKTTFDDHNLSINWFYDGTLNASANCL 82
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
H + VAI+W D +E +TY EL QV ANAL + +GD + I
Sbjct: 83 --DRHLAAHSDRVAIIWEGDNANEQ--RKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR PL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 300 YSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352
+ A P K IVL G + + +D+ W + + H
Sbjct: 199 KRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCAVEEMG-AE 256
Query: 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG 411
+P+ +L++SG+TG PK + T + + ++ D K G++Y ++GW+ G
Sbjct: 257 DPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITG 312
Query: 412 -PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTNCL 465
+++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 313 HSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHF 372
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQA 523
+ + + +R S GE N + W WY+ +I E C + G +L
Sbjct: 373 DKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHCPIVDTWWQTETGGILITPL 426
Query: 524 FGAFSTATMTA-----GL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576
GA T +A G+ ++D G + G + L + G R + DHE
Sbjct: 427 PGATDTKPGSATRPFFGVQPALVDNMGNIL--EGATEGNLVLLDSWPGQM-RTVYGDHER 483
Query: 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 636
++GM GD +R GY + GR DD +N+ G + + E+E + E
Sbjct: 484 FVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VSHE 540
Query: 637 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN----P-LFKV 691
+ E A + P + + +V L +G T + ++L+ + ++ ++ P L +
Sbjct: 541 LVAEAAVVGY-PHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGALATPDLIQW 598
Query: 692 VPEFPRTASNKLLRRVLRDQIKHELS 717
P+T S K++RR LR +E++
Sbjct: 599 ATGLPKTRSGKIMRRFLRKIAANEVT 624
|
|
| UNIPROTKB|F1SAS2 ACSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 2.7e-34, P = 2.7e-34
Identities = 171/631 (27%), Positives = 278/631 (44%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P+L A P ++ P A+W K++ +V+ + D +S G
Sbjct: 28 PRLWSSAPAAPPGFYQERIALAAREPAAFWGPLAKDV-LVWDTPYHTVSDCDFRSGKIG- 85
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W G LN++ CL H +K +VA++W D +AV + TY+EL E +AN L
Sbjct: 86 WFLGGQLNVSVNCL--DQHVQKSPESVALIWERDE-PGTAVRI-TYRELLETTCRLANTL 141
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+GD +AI MP++ AV LA G V I F+A +A R+ +K K +
Sbjct: 142 KRHGVCRGDRVAIYMPVSPMAVAAMLACARIGAVHTVIFAGFSAGSLAGRINDAKCKVLI 201
Query: 286 TQDFILRGGRKFPLYSKVLGAAPL-KAI--VLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342
T + LRGGR L V A L +I VL A D +P+ D+ + ++ +
Sbjct: 202 TFNQGLRGGRVVELKRIVDEAVKLCPSIQHVLVAHRTDNKVPMGNLDIPLEQEMAKEE-- 259
Query: 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 401
P +P + + +L++SG+TG+PK + TQ + A + D + GD++
Sbjct: 260 --P-VCAPESMGSEDTLFLLYTSGSTGKPKGLVHTQAGYLLYAALTHRLVFDYRPGDIFG 316
Query: 402 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVK 457
++GW+ G +++ NGAT L++ +P+ G++ VQ + P+ +
Sbjct: 317 CMADIGWITGHSYVVYGPLCNGATSVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAFR 376
Query: 458 AWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAY 513
+ + ++ D + +R+ S GE N + WL ++++ TE
Sbjct: 377 LLLKYSDSWVKKYDRSSLRTLGSVGEPINHEAWEWLHQVVGDGRCTLVDTWWQTETGGIC 436
Query: 514 IQGSLLQPQAFGAFSTATMTA----GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASD 567
I +P GA M G+V ++DE G + G + L + G +
Sbjct: 437 ISP---RPSEEGANILPCMAMRPLFGIVPVLMDEKGKVL-EGGDVSGALCLSQAWPGMA- 491
Query: 568 RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
R + DH+ + YF+ P Y GD RT GY + GR DD +N+ G + +
Sbjct: 492 RTIYGDHQRFIDAYFKAFPGYYFT-----GDGAYRTEEGYYQITGRMDDVINISGHRLGT 546
Query: 625 VEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD----KLKMIFSK 679
EIE AD ++ ETA I P E F+VLK G T D +L+ + +
Sbjct: 547 AEIEDA--MADHPAVPETAVIGY-PHDIKGEAAFAFIVLKDG-TGDVDVVVKELRSVVAD 602
Query: 680 AIQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709
I P VV P+T S K++RR+LR
Sbjct: 603 KIAKYAVPDQVLVVKRLPKTRSGKVMRRLLR 633
|
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| DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 154/608 (25%), Positives = 264/608 (43%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDYTT--VQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDY 341
T D LRGGR PL K+ K + + + G P + S W D + +D+
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDH 253
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
P Y PV+ + + IL++SG+TG PK + TQ + A ++ D DVY
Sbjct: 254 RP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVY 310
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLV 456
++GW+ G I++ NGAT +++G+PL + + + VQ +T T P+ +
Sbjct: 311 ACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAI 370
Query: 457 KAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSA 512
++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 371 RSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-- 428
Query: 513 YIQGSLLQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y--PDDQPCVGEVGLFPL 561
G L+ P G ST +A G L +LD + G Y PD C G+ +
Sbjct: 429 ---GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAI 484
Query: 562 YLG--ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
R + H M YKG GD +K GY ++GR DD +N+ G
Sbjct: 485 SKPWPGIARSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVSG 542
Query: 620 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 679
+ + E+E SI AA+ P + ++ F LK+G+ + M+ K
Sbjct: 543 HRLGTAELESALVGC--SICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKK 600
Query: 680 AIQSKLNP 687
+++ + P
Sbjct: 601 EVRNVIGP 608
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| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 3.9e-34, P = 3.9e-34
Identities = 151/568 (26%), Positives = 236/568 (41%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++YKEL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYKELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A P +VL G + +DL W D +
Sbjct: 185 TSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQ 243
Query: 339 V-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKV 396
D H N D + IL++SG+TG+PK + T + A + ++ D
Sbjct: 244 ASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHP 297
Query: 397 GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTV 452
GD+Y ++GWV G +L+ GAT +++G P + V V +L T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTA 357
Query: 453 PSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTE 508
P+ ++A +EG D + +R S GE N + W K ++++ TE
Sbjct: 358 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTE 417
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEVGLFPLYLGAS 566
+ ++ L A S G+ ++D G P + G + + + G +
Sbjct: 418 -TGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--EGATEGSLVITDSWPGQA 474
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
R L DHE +K M GD +R GY + GR DD +N+ G + + E
Sbjct: 475 -RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 686
IE A I E A + + P + + +V L G P+ + ++ ++
Sbjct: 532 IESAL-VAHPKIAEAAVVGI-PHNIKGQAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIG 588
Query: 687 PL-----FKVVPEFPRTASNKLLRRVLR 709
PL P+T S K++RR+LR
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILR 616
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84P17 | AEE18_ARATH | 6, ., 2, ., 1, ., - | 0.6972 | 0.9958 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
| 4th Layer | 6.2.1.16 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024773001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (727 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 722 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-74 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-70 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-59 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 2e-56 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 8e-50 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-48 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-46 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-46 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-44 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 5e-38 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 9e-38 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 1e-33 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 4e-29 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 4e-28 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 3e-24 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-23 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-21 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 6e-21 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 4e-20 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 9e-20 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-19 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 7e-18 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 9e-18 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-17 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 9e-17 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 1e-16 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-16 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-16 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-16 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-16 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-15 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-15 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 2e-15 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 7e-15 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 9e-15 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-14 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-14 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-14 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-13 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-13 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 5e-13 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-13 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-13 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-13 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-12 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-11 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-11 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 4e-11 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 7e-11 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 6e-10 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-10 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 2e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 4e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-09 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-08 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 5e-08 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 6e-08 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 9e-08 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-07 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-07 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-07 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-07 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 5e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 7e-07 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-07 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 9e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-06 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-06 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-06 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 6e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-06 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-05 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-05 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-05 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 2e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-05 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-05 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-05 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 3e-05 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-05 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 5e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 8e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-04 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 3e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-04 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-04 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 4e-04 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 5e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-04 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.001 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.001 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.002 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 0.003 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.003 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.003 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 0.004 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.004 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1242 bits (3216), Expect = 0.0
Identities = 450/730 (61%), Positives = 539/730 (73%), Gaps = 13/730 (1%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
GK++ E+ V DL GL EEAE+F K L+ +++ + G IWR +++ +L P HP
Sbjct: 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRA-GASPPSIWRR-ISQSLLTPSHP 61
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
LHQL+YYS Y +WD+ GPP WFPS + +KLTNLG LE G +LLG YKDPI+S
Sbjct: 62 FALHQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISS 121
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F FQ+F+VE+PE YW I L E+S+VF P+CILD +D+S GG WLPG+VLN+AECCL
Sbjct: 122 FSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCL 181
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
P + D+++AI+WR++ D+ VN MT ELR QV VANALD + F KGDAIAID
Sbjct: 182 TPKPSKT--DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V AVIIYLAIILAG VVVSIADSFA EIATRL++SKAK IFTQD I+RGG+ PL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
YS+V+ A KAIVLPA G V + LRE D+SW DFL+ + RP+ Y V PV+A
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQL+ +R A+ WAH+D++ GD+ CWPTNLGW+MGP ++++S
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLDW+ IR F ST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE S+VDD LWL S+A Y IIE CGGTEL ++ GSLLQPQAF AFST M L IL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
D+ G PYPDD PC GE+ LFPL GAS LLNADH +VYF+GMP++ G LRRHGDI +R
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GGY GRADDTMNLGGIK SSVEIERVC+ ADES+LETAAI V P GGGPE LVI
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA 659
Query: 660 VVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLRRVLRDQI 712
VLK G ++LK IF+ AIQ KLNPLFKV VP FPRTASNK++RRVLR Q+
Sbjct: 660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719
Query: 713 KHELSVRSRI 722
ELS RS++
Sbjct: 720 AQELS-RSKL 728
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 830 bits (2145), Expect = 0.0
Identities = 344/499 (68%), Positives = 400/499 (80%), Gaps = 16/499 (3%)
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 357
YSKV+ AAP KAIVLPA G V +PLREQDLSW DFL ++ N YSPVY PV++
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475
+FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T +EGLDW+K+R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
FASTGE S VDD LWLSS + +Y +IE CGGTEL+S YI +LLQPQA GAFSTA++
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 592
V+L++ GVPYPDDQPCVGEV L P LGASDRLLNADH++VY++GMPMY KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
HGDI+KRT GGY VQGRADDTMNLGGIKTSSVEIER CD+A I ETAA+ V+P GG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420
Query: 653 PEVLVIFV---VLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKL 703
PE+LVIF+ KKGF P+ L+ F +AIQ+ LNPLFKV VPE PR ASNKL
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480
Query: 704 LRRVLRDQIKHELSVRSRI 722
LRRVLRDQ+K ELS RS++
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499
|
Length = 499 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 3e-74
Identities = 148/573 (25%), Positives = 231/573 (40%), Gaps = 83/573 (14%)
Query: 166 TWLPGSVLNIAECCLLPSNHRRKE---DNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
W G LN+A L R E + AI++ + +TY +LR +V +
Sbjct: 1 KWFEGGTLNLALNAL----DRHLEADRPDDTAIIFDGEDGLFRE---LTYGDLRREVARL 53
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
ANAL D KGD +AI MP + AVI LA G + ++ +A +A R+
Sbjct: 54 ANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGP 113
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
K + D R G++ L +V L + + +
Sbjct: 114 KVLIADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASE 161
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 398
+ P D + +L++SGTTG+PK I + L R TA+ H DL GD
Sbjct: 162 K-----FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGD 214
Query: 399 VYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSL 455
+ ++ GW+ G +FS +GAT LY G P + ++ VT+ GT P+
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274
Query: 456 VKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSS 511
++ E D + +R S GE N + W +Y+A I++ G TE
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGM 329
Query: 512 AYIQG--SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-------GLFPLY 562
+I G + + + +D+ G P P P VGE+ G+ Y
Sbjct: 330 GFIAGRPPVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGELVVRLPWPGMALTY 382
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
+R A Y GD +R GY + GR+DD + + G +
Sbjct: 383 WNDPERYKEAYFGRWYR-------------TGDWAERDEDGYFWLHGRSDDVIKVSGKRI 429
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+EIE V A ++ E A + V P G ++++ FVVL G P++L + +
Sbjct: 430 GPLEIESVL-LAHPAVAEAAVVGV-PDPGKGQIVLAFVVLAAGVE--PNELAEEIRRHVA 485
Query: 683 SKLNPLFK-----VVPEFPRTASNKLLRRVLRD 710
+ P V E P+TAS K+ RR+LR
Sbjct: 486 RNIGPHAIPRKIRFVDELPKTASGKIQRRLLRK 518
|
Length = 528 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 1e-70
Identities = 149/530 (28%), Positives = 228/530 (43%), Gaps = 94/530 (17%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261
++ +V TY EL +V +A+ L + KGD + I MPM AV+ LAI G + V
Sbjct: 1 EDGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAV 60
Query: 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321
I F +ATRL+ ++AK + T D LR G++
Sbjct: 61 PIFSGFGPDAVATRLQDAEAKVLITADGFLRRGKR------------------------- 95
Query: 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 381
+ L++ I+++SGTTG+PK T
Sbjct: 96 -VDLKDDPAM-----------------------------IIYTSGTTGKPKGTVHTHAGF 125
Query: 382 -IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSF 437
++ + DLK GD W T++GW+MGP ++ L GAT+ LY+G+ P
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL 185
Query: 438 GKFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK- 494
+ V+ VT LG P+L++A R +EG D + +R STGE + + LWL +
Sbjct: 186 WRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERV 245
Query: 495 -AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
II GGTE+S + ++P +F+ + ++DE G P V
Sbjct: 246 GGGRAPIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEV 302
Query: 554 GE-------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
GE G+ + +R + E Y+ P G+ HGD GY
Sbjct: 303 GELVVRAPWPGMTRGFWRDPER-----YLETYWSRFP---GVW--VHGDWALVDEDGYWY 352
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKG 665
+ GR+DDT+ + G + EIE V + + E AAI V P G E +V FVVLK G
Sbjct: 353 ILGRSDDTIKVAGKRVGPAEIESVLNSHPA-VAEAAAIGVPDPVKG--EAIVCFVVLKPG 409
Query: 666 FTSQPDKLKMIFSKAIQSKLNPLFK-----VVPEFPRTASNKLLRRVLRD 710
T L+ + + L F+ V + P+T + K++RRV+R
Sbjct: 410 VT-PSAALEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRA 458
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-59
Identities = 166/625 (26%), Positives = 263/625 (42%), Gaps = 81/625 (12%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + +++VE A+WE V+ + +LD G W PG+ LN A
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIMP--GARWFPGARLNYA 61
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
E L R +++ AI + + +++ ELR QV +A AL + GD
Sbjct: 62 ENLL-----RHADNDPAAIYAAGE---DGERREISWAELRSQVARLAAALRDLGVKPGDR 113
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+A +P AVI LA G + S + F + R + K +F D + G+
Sbjct: 114 VAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGK 173
Query: 296 KFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ K+ L+A+V+ + P + + S P + +
Sbjct: 174 EHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL 233
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407
P D + IL+SSGTTG PK I L ++ E H DL+ GD + T G
Sbjct: 234 --PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
W+M L S L+GATL LY GSPL + G+T+ GT + A
Sbjct: 289 WMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 465 --LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
D + +R+ STG E S+V D+WL+S + GGT++
Sbjct: 348 EPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGC 398
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---------PLY- 562
++ G+ P G + + DE + +P +GEVG PLY
Sbjct: 399 FVGGNPTLPVYRGEIQCRGLGMAVEAFDE------EGKPVIGEVGELVCTKPFPSMPLYF 452
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
D + + + YF + G+ RHGD IK T G +I+ GR+D T+N GG++
Sbjct: 453 WNDPD---GSRYRDAYFD---TFPGVW--RHGDWIKITPHGGVIIYGRSDATLNPGGVRI 504
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+ EI RV ++ E + ++ + G E + +FV L++G T +K I AI+
Sbjct: 505 GTAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVKRI-RSAIR 561
Query: 683 SKLNPLF---KV--VPEFPRTASNK 702
+ L+P ++ VP+ P T S K
Sbjct: 562 AALSPRHVPAEIIAVPDIPYTLSGK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 2e-56
Identities = 189/686 (27%), Positives = 280/686 (40%), Gaps = 122/686 (17%)
Query: 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIAL 140
G PL W PS ++ + + + L + +++VE EA+W+
Sbjct: 2 GDPL-WTPSAERIAASRMTAFIR-----WLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 141 KEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIV-WRE 199
V+ +L + G W PG+ LN AE L R + D+ AI+ E
Sbjct: 56 DFFGVIGSTPYTVVLA--GRRMPGARWFPGARLNYAENLL-----RHRRDDRPAIIFRGE 108
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D +++ ELR QV +A AL + GD +A +P V+ LA G
Sbjct: 109 DGPRRE----LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIV 313
+ S + F + + R + K + D GG+ F +KV A P +V
Sbjct: 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+P +G L W+DFL+ + PV P D + IL+SSGTTG PK
Sbjct: 225 VPYLGPAAAAAALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKC 280
Query: 374 IP-------WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
I L + H DL GD + W T GW+M L S L GATL
Sbjct: 281 IVHGHGGILLEHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLV 333
Query: 427 LYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRS 475
LY GSP + + GVTV GT + A C E D + +R+
Sbjct: 334 LYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRT 387
Query: 476 FASTGE----------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 525
STG +V D+WL+S I GGT++ S ++ G+ L P G
Sbjct: 388 IGSTGSPLPPEGFDWVYEHVKADVWLAS-------I--SGGTDICSCFVGGNPLLPVYRG 438
Query: 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVG-L--------FPLYL-----GASDRLLN 571
+ + DE G +P VGEVG L PL G+ R +
Sbjct: 439 EIQCRGLGMAVEAWDEDG------RPVVGEVGELVCTKPFPSMPLGFWNDPDGS--RYRD 490
Query: 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
A YF + G + RHGD I+ T G +++ GR+D T+N GG++ + EI R
Sbjct: 491 A-----YFD---TFPG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV 540
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF-- 689
+ E +L++ I G + +FVVL +G T I I++ L+P
Sbjct: 541 EALPE-VLDSLVIGQEWPDGDVRM-PLFVVLAEGVTLDDALRARI-RTTIRTNLSPRHVP 597
Query: 690 -KV--VPEFPRTASNKLL----RRVL 708
K+ VP+ PRT S K + +++L
Sbjct: 598 DKIIAVPDIPRTLSGKKVELPVKKLL 623
|
Length = 655 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 8e-50
Identities = 131/537 (24%), Positives = 201/537 (37%), Gaps = 76/537 (14%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL + +A AL + GD +AI +P + +I +LA + AG V V +
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+A L + AK + T L V A P+ +VL D +P+ +
Sbjct: 99 PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 386
L P P+ + +P D +L++SGTTG PK + T + + A
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 444
L DV L + G V L + L G TL L P + ++
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Query: 445 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503
VTVL VP+ ++ + + + +R S G + + AI+E
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP----------DDQPCV 553
G TE S + L G P P +
Sbjct: 324 YGLTETS--------------PVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369
Query: 554 GEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
GEVG + Y + A E+ + R GD+ GY+
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT------------GDLGYVDEDGYL 417
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
+ GR D + GG EIE V + + E A + V G E +V VVLK G
Sbjct: 418 YIVGRLKDLIISGGENIYPEEIEAVLAEHPA-VAEAAVVGVPDERWG-ERVVAVVVLKPG 475
Query: 666 FTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRRVLRDQIKHEL 716
++ ++ ++ +L L+KV V E PRTAS K+ RR LR++ + E
Sbjct: 476 GDAELTAEELR--AFLRKRL-ALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEP 529
|
Length = 534 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 174/656 (26%), Positives = 284/656 (43%), Gaps = 108/656 (16%)
Query: 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK-CILDRTDKSKHGGTWLPGSVLNIA 176
+ ++ + ++E P+ +W +E+ F+ K K W G LN++
Sbjct: 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYK----WFVGGELNVS 59
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
C+ H + VAI+W D + V +TY+EL +V AN L ++ KGD
Sbjct: 60 YNCV--DRHLEARPDKVAIIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+AI MPM A I LA G + + F+A +A R+ + AK + T D LRGG+
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 296 KFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + V L P+ +V+ GN V + +D+ W D ++ Y
Sbjct: 176 VIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----SAYCE 229
Query: 350 PVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DLKVGD 398
P P+D+ + IL++SG+TG+PK + + T G +A + D+K GD
Sbjct: 230 P--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDIKDGD 279
Query: 399 VYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 453
++ W T ++GW+ G I++ NGAT +++G+P G+F ++ VT+ T P
Sbjct: 280 IF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP 338
Query: 454 SLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507
+ ++A G +W K +R S GE N + W+ WY ++ G
Sbjct: 339 TAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN--PEAWM----WYYKVV---GKE 385
Query: 508 E--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGE 555
+ + Q G ++ GA T +A L ++DE G + GE
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG----NPVEGPGE 441
Query: 556 VGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
G YL R + DHE + YF + G GD +R GYI
Sbjct: 442 GG----YLVIKQPWPGMLRTIYGDHERFVDTYF---SPFPGYYFT--GDGARRDKDGYIW 492
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF 666
+ GR DD +N+ G + + EIE + ++ E A + + G + + FV LK G+
Sbjct: 493 ITGRVDDVINVSGHRLGTAEIESAL-VSHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDGY 550
Query: 667 TSQPD---KLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHELSV 718
+ +L+ K I P + VP P+T S K++RR+LR E +
Sbjct: 551 EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEEEI 606
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 2e-46
Identities = 166/617 (26%), Positives = 255/617 (41%), Gaps = 60/617 (9%)
Query: 124 FQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPS 183
+++V+ + +W+ + V F ++D D++ G W PG+ LN AE
Sbjct: 40 LHRWSVDELDTFWKAVWEWFDVRFSTPCARVVD--DRTMPGAQWFPGARLNYAE------ 91
Query: 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242
N R A+++ D E A +T+ ELR QV +A AL + GD ++ +P
Sbjct: 92 NLLRAAGTEPALLYV-DETHEPAP--VTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+AV+ LA G + S + F AR + R + + K +FT D G++ K
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 303 VL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--P 354
V L+A+V P +G P + L +DF ++ V+ P
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE------LVFEQLP 262
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ILFSSGTTG PK I + + ++ E H DL GD + T GW+M
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN- 321
Query: 414 ILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468
L S GATL LY GSP + G T+ GT V A R
Sbjct: 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381
Query: 469 DWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D + ++ ASTG D W+ + W +I GGT++ S + + P
Sbjct: 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCFAGANPTLPVHI 438
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN----ADHEEVYFR 580
G + + D G P + VGE+ R N + + + YF
Sbjct: 439 GEIQAPGLGTAVQSWDPEGKPVTGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD 495
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
P + RHGD I T G I++ GR+D T+N G++ S EI ++ DE + E
Sbjct: 496 TYPG-----VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRE 549
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEF 695
+ I GG +V+FV L G T L I + I++ L+P VP
Sbjct: 550 SLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRI-KRTIRAGLSPRHVPDEIIEVPGI 607
Query: 696 PRTASNKLLRRVLRDQI 712
P T + K + ++ +
Sbjct: 608 PHTLTGKRVEVAVKRVL 624
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 3e-46
Identities = 104/434 (23%), Positives = 163/434 (37%), Gaps = 48/434 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY+EL E+ +A AL + GD +AI +P + V+ LA++ AG V + S A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
+A L S+AK + T D L K+L ++L I +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
+S + P P D + I+++SGTTG+PK + T + + A
Sbjct: 112 DDELLAGASAEPPAPPV--DP-----DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164
Query: 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 448
L GD L + +F L G TL L L+ ++ VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
L VP+L++ + D + +R S GE + L + ++ G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEV----- 556
+ G + G + +LDE G P P VGE+
Sbjct: 285 TTVVATA------NLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPG--EVGELCIRGP 336
Query: 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
G+ YL + E + G + R GD+ + GY+ + GR DD +
Sbjct: 337 GVARGYLNDPEL-----TAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKDDQVK 386
Query: 617 LGGIKTSSVEIERV 630
+ G + EIE V
Sbjct: 387 IRGERIEPGEIEAV 400
|
Length = 412 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-44
Identities = 184/660 (27%), Positives = 279/660 (42%), Gaps = 140/660 (21%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL---LP 182
K ++E PE +W +E+ F+ K +LD + W G LN + CL L
Sbjct: 2 KESIEDPEEFWAEQAEELDW-FKPWDK-VLD--WSNPPFAKWFVGGKLNASYNCLDRHLK 57
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMP 241
+ N VAI+W + DES +TY+EL +V AN L ++ KGD +AI MP
Sbjct: 58 AGRG----NKVAIIWEGEPGDESRT--ITYRELYREVCRFANVLKSLGVKKGDRVAIYMP 111
Query: 242 MTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
M I LA ++ AG F+A +A R+ +K+K + T D R
Sbjct: 112 MIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSKLLITADGGYR 162
Query: 293 GGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 346
GG+ PL V L P K IV+ G +V P+ E +D+ W D ++
Sbjct: 163 GGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLMAKA-----SP 215
Query: 347 YYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH------IDLK 395
Y P P+DA + IL++SG+TG+PK + T L +A D+
Sbjct: 216 YCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAATTFKYVFDIH 265
Query: 396 VGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLG 450
DVY W T ++GW+ G I++ NGAT +Y+G+P G++ V+ VT+
Sbjct: 266 PDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFY 324
Query: 451 TVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII--E 502
T P+ ++ G +W K +R S GE N + W+ WY +I E
Sbjct: 325 TAPTAIRMLMR----FGDEWPKKHDLSSLRLLGSVGEPINPE--AWM----WYYEVIGKE 374
Query: 503 SCGGTELSSAYIQ----GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQP 551
C + + Q G ++ P GA +A I+DE G
Sbjct: 375 RC---PIVDTWWQTETGGHMITPLP-GATPLKPGSATRPFPGVEPAIVDEEGNEVEG--- 427
Query: 552 CVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G G YL R + DHE + YF + G GD +R
Sbjct: 428 --GVEG----YLVIKRPWPGMLRTIYGDHERYVKTYFS---KFPGYYFT--GDGARRDED 476
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIER--VCDQADESILETAAISVSPAGGGPEVLVIFV 660
GY + GR DD +N+ G + + E+E V + ++ E A + G E + FV
Sbjct: 477 GYYWILGRVDDVINVSGHRLGTAEVESALV---SHPAVAEAAVVGKPDEVKG-EAIYAFV 532
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFK-----VVPEFPRTASNKLLRRVLRDQIKHE 715
LK G D+L+ K ++ ++ P+ VP P+T S K++RR+LR E
Sbjct: 533 TLKDGVEP-SDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILRKIAAGE 591
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-38
Identities = 166/629 (26%), Positives = 272/629 (43%), Gaps = 82/629 (13%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ PEA+W I + + + +LD ++ W G LN+ + R E
Sbjct: 1 KEPEAFWAEQANLID--WYKPWEKVLDNSNPPFT--RWFVGGRLNLCYNAV----DRHIE 52
Query: 190 D---NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
D + +A+++ D TY EL ++V +A L + KGD + I MPM
Sbjct: 53 DGRGDQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPE 110
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
AVI LA G + + FA++E+A+R+ +K K I T F + GR P Y +L
Sbjct: 111 AVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLD 169
Query: 306 AA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
A P K ++L V PL+ +DL W + ++ V PV++
Sbjct: 170 KALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD------CV--PVES 219
Query: 358 V--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLG 407
+ IL++SGTTG+PK + +R A W+ +I +K GDV+ +++G
Sbjct: 220 TDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVG 272
Query: 408 WVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR-- 460
WV+G I++ L+GAT LY+G P+ ++ + +++ GV L T P+ ++A R
Sbjct: 273 WVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQ 332
Query: 461 --NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI---Q 515
+ ++ D + +R+ GE + W+ K +I+ TE
Sbjct: 333 DPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE-KTLGVPVIDHWWQTETGWPITANCV 391
Query: 516 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADH 574
G L P G+ + +LDE G +G + + PL G L D
Sbjct: 392 GLELLPIKPGSPGKPVPGYDVQVLDETGEELGPG--ELGNIVIKLPLPPGCLLTLWG-DD 448
Query: 575 E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E ++Y P Y GD + GY+ V GR DD +N+ G + S+ E+E
Sbjct: 449 ERFKKLYLNKFPGY-----YDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESV 503
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL--F 689
+ E A + V G +V + VVLK D+L+ ++ ++ P+ F
Sbjct: 504 -LKHPDVAECAVVGVRDELKG-QVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAF 561
Query: 690 K---VVPEFPRTASNKLLRRVLRDQIKHE 715
+ V P+T S K+LRR LR E
Sbjct: 562 RNVVFVKRLPKTRSGKILRRTLRKIADGE 590
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 9e-38
Identities = 98/364 (26%), Positives = 144/364 (39%), Gaps = 54/364 (14%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419
IL++SGTTG+PK + + + + I L GDV L V+G L +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L G T+ LY+G P SF + ++ VTVL VP+L A G D + +R S
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124
Query: 480 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
GE L + I+E G TE S + + G T
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171
Query: 535 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
G + E V + +P GEVG + Y A E+ ++R
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYR---- 227
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ GY+ + GR+ D + +GG E+E V Q ++ E A +
Sbjct: 228 --------TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQH-PAVAEAAVV 278
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRT 698
V P E +V FVVL+ G + ++L KA + +KV V E P+T
Sbjct: 279 GV-PDEDRGERIVAFVVLRPGADALAEEL-----KAHLRERLAPYKVPRVIEFVDELPKT 332
Query: 699 ASNK 702
AS K
Sbjct: 333 ASGK 336
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 1e-33
Identities = 190/692 (27%), Positives = 278/692 (40%), Gaps = 173/692 (25%)
Query: 112 RAYKDPITSFRLFQKFTVEHPEAYW-EIALKEIS------VVFREAPKCILDRTDKSKHG 164
A D L+Q+ +VE PE +W E A K + V I
Sbjct: 11 NALIDMEQYKALYQE-SVEDPEGFWAEQA-KRLDWFKPFDTVLDWNAPFI---------- 58
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + VAI+W D +S +TY+EL +V AN
Sbjct: 59 -KWFEDGELNVSYNCL--DRHLKTRGDKVAIIWEGDDPGDSRK--ITYRELHREVCRFAN 113
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIAT 274
AL ++ KGD +AI MPM A + LA ++ G F+A +A
Sbjct: 114 ALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALAD 164
Query: 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-Q 328
R+ + AK + T D +RGG+ PL + V L P K IV+ G DV E +
Sbjct: 165 RIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGR 222
Query: 329 DLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W + ++ D P P+DA + IL++SG+TG+PK + T T
Sbjct: 223 DLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------T 267
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---S 431
G +A + D K GDVY W T ++GWV G I++ NGAT +++G
Sbjct: 268 G-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325
Query: 432 PLERSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFAS------TGE 481
P F + + VT+ T P +L+K EG + K +S GE
Sbjct: 326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMK--------EGDEHPKKYDLSSLRLLGSVGE 377
Query: 482 TSNVDDDLWLSSKAWYNAII--ESC-----------GGTELSSAYIQGSLLQPQAFGAFS 528
N + W WY ++ E C GG ++ P GA
Sbjct: 378 PIN--PEAWE----WYYKVVGGERCPIVDTWWQTETGGIMITPL--------P---GATP 420
Query: 529 TATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE 575
+A ++DE G P GE G L D R + DHE
Sbjct: 421 LKPGSATRPLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKDPWPGMMRTIYGDHE 471
Query: 576 ---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER--V 630
+ YF +KGM GD +R GY + GR DD +N+ G + + EIE V
Sbjct: 472 RFVKTYF---STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526
Query: 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNP 687
A + E A + G + + FV LK G + +L+ K I P
Sbjct: 527 ---AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKP 582
Query: 688 -LFKVVPEFPRTASNKLLRRVLRDQIKHELSV 718
+ + P P+T S K++RR+LR + E +
Sbjct: 583 DVIQFAPGLPKTRSGKIMRRILRKIAEGEEIL 614
|
Length = 637 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-29
Identities = 154/627 (24%), Positives = 261/627 (41%), Gaps = 66/627 (10%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECC 179
+ F + ++E PEA+W + I ++ P+ ILD + W G N+ C
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRID--WQTPPQRILD--YSNPPFARWFAGGRTNL--CH 55
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
H + +A+V + +TY++L +V + A+AL + +GD + I
Sbjct: 56 NALDRHLDERGEQLALVTVSSETGQERT--LTYRQLHREVNVFASALRALGVGRGDRVLI 113
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM AV LA G + + FA+ +A R+ + K I + D +RGG+ P
Sbjct: 114 YMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIP 173
Query: 299 LYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 355
Y +L AA +A P + D G+ P+R + +D VDY + PV
Sbjct: 174 -YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQHEDAQVPV 226
Query: 356 DAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
+ + + IL++SGTTG+PK + ++ WA ++ G V +++GWV
Sbjct: 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV 286
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKAWR--NTN 463
+G I+++ L GA LY+G P G V+ GV + + P+ ++ + +
Sbjct: 287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLLQ 520
L D + + GE + W++ +I++ TE A + G L+
Sbjct: 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITD-GLGKPVIDNYWQTETGWPVLAIMPGLDLK 405
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHE 575
P G+ L +LDE +PC E G+ PL G + D
Sbjct: 406 PVKLGSPGLPMYGYHLRVLDEA-----TGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDAR 460
Query: 576 EV--YFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
+ Y+ P+Y D R GY + GR DD +N+ G + + EIE
Sbjct: 461 FLKTYWSHFKRPLYSSF------DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV 514
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNP 687
+ S+ E A + V G +V V+F +LK+ ++ + +L
Sbjct: 515 -SSHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572
Query: 688 LFK-----VVPEFPRTASNKLLRRVLR 709
+ + V P+T S KLLRR ++
Sbjct: 573 VARPARVYFVAALPKTRSGKLLRRSIQ 599
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 4e-28
Identities = 170/652 (26%), Positives = 256/652 (39%), Gaps = 111/652 (17%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVF------REAPKCI--LDRTDKSKHGGTWLPGSV 172
+ K +V+ P +W +I+ F C LD K W G
Sbjct: 32 YMEMYKRSVDDPAGFWS----DIASQFYWKQKWEGDEVCSENLDVR-KGPISIEWFKGGK 86
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI CL N + +AI W + + +TY EL ++V +AN L +
Sbjct: 87 TNICYNCL-DRNVEAGNGDKIAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVK 143
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGDA+ I +PM + I LA G V + F+A +A R+ K K + T + +
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 329
RG K + LK IV A+ G VGI L RE +D
Sbjct: 204 RG-------PKTI---NLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 384
+ W+D + PNY P V+ V + +L++SG+TG+PK + T +
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303
Query: 385 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 439
TA + + D K DVY + GW+ G + + LNGAT+ +++G+P G+
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363
Query: 440 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSN----------VDD 487
V VT+ T P+LV++ + +R S GE N V D
Sbjct: 364 IVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD 423
Query: 488 DLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 544
S W+ GG T L A+ PQ G+ + VI+DE G
Sbjct: 424 SRCPISDTWWQT---ETGGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGK 473
Query: 545 PYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+ C G + + + GA R L DH E YF+ Y GD R
Sbjct: 474 EI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTYFKPFAGY-----YFSGDGCSRDK 525
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GY + GR DD +N+ G + + E+E + E A + + G + FV
Sbjct: 526 DGYYWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCAEAAVVGIEHEVKGQGIYA-FVT 583
Query: 662 LKKGFTSQPD---KLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709
L +G + L + I + P P P+T S K++RR+LR
Sbjct: 584 LVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 635
|
Length = 666 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 146/587 (24%), Positives = 223/587 (37%), Gaps = 123/587 (20%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LP + A RR D A V+ + R +TY EL +V A AL
Sbjct: 7 LPELLARAA---------RRFGDKE-AYVFGDQR--------LTYAELNARVRRAAAALA 48
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ KGD +AI P + VI L + AG VVV + + A E A L AK +F
Sbjct: 49 ALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108
Query: 287 QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
L + P L+ +V+ D P E+ ++ DFL++ D P
Sbjct: 109 LGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----P 156
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD------ 398
+P +P D V +ILF+SGTTG PK T + A WA L GD
Sbjct: 157 AERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAAN 214
Query: 399 ----VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V+ + + + + GAT L L P + F + ++ +TVL P
Sbjct: 215 PFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPP 263
Query: 454 SLVKAWRNTNCLEGLDWTKIRSFASTGETS-------NVDDDLWLSSKAWYNAIIESCGG 506
++ + D + +R A TG S + +L + ++ G
Sbjct: 264 TMYNSLLQHPDRSAEDLSSLR-LAVTGAASMPVALLERFESELGVDI------VLTGYGL 316
Query: 507 TELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPLYLG 564
+E S L + A + T AG I++E G P VGEVG
Sbjct: 317 SEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVP-----VGEVG------- 364
Query: 565 ASDRLLNADHEEVYFRG---------MPMYKGMCLRRHG-----DIIKRTVGGYIIVQGR 610
E+ RG P + G D+ + GY+ + R
Sbjct: 365 -----------ELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDR 413
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
D +GG E+E V + ++ E A I V G EV +VVLK G
Sbjct: 414 KKDMFIVGGFNVYPAEVEEVLYEHP-AVAEAAVIGVPDERLG-EVGKAYVVLKPGAELTE 471
Query: 671 DKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRRVLRDQ 711
++L + + + +K +KV + E P+ A+ K+L+R LR++
Sbjct: 472 EEL-IAYCREHLAK----YKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 4e-23
Identities = 125/543 (23%), Positives = 189/543 (34%), Gaps = 142/543 (26%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E A L KGD +A+ +P + I Y I+ AG VVV + +
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK +
Sbjct: 85 PRELEHQLNDSGAKVLIV------------------------------------------ 102
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 386
+S++D L+S P PV D + + ++ GTTG PK T L +
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157
Query: 387 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
W + D ++ N + GAT L + +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207
Query: 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496
K ++ T+ VP+L A N + D++ +R S G V+ ++ +
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE-----VAERF 262
Query: 497 ---YNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVP 545
A ++E G TE S L + G + GL I+D+ G
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPG-------SIGLPLPGTEVKIVDDEGNE 315
Query: 546 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLR----R 592
P GEVG E+ RG M Y L R
Sbjct: 316 LPP-----GEVG------------------ELVVRGPQVMKGYWNRPEETAEVLTDGWLR 352
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
GDI GY + R D + +GG EIE V + ++LE A + V P
Sbjct: 353 TGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL-YSHPAVLEAAVVGV-PDPYR 410
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRR 706
E + FVVLK+G + ++L + F + +L +KV E P++A K+LRR
Sbjct: 411 GEAVKAFVVLKEGASLTEEEL-IAFCR---ERLAA-YKVPRQVEFRDELPKSAVGKILRR 465
Query: 707 VLR 709
LR
Sbjct: 466 ELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-21
Identities = 112/526 (21%), Positives = 188/526 (35%), Gaps = 80/526 (15%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ +L ++ + +A L + +GD +A+ P ++ ++L + AG +V + S+
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 323
E+A +L++SK K IF KV AA + IVL + + V
Sbjct: 71 PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
+D L +P+ + D +L+SSGTTG PK + LS
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170
Query: 384 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437
A + DV G +S L GAT+ + E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229
Query: 438 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
K ++ VT L VP + A + ++ D + +R S + + L +
Sbjct: 230 LKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPN 289
Query: 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLV--ILDECGVPYPDDQPCVG 554
I + G TE A + L P S + + I+DE G
Sbjct: 290 TTIKQGYGMTETGPA----TTLTPPGDEKPGSVGRLVPNVEAKIVDEDG----GKSLGPN 341
Query: 555 EVGLFPLYLGASDRLLNADHEEVYFRG---MPMY-------KGMCLR----RHGDIIKRT 600
E G E+ +G M Y K GDI
Sbjct: 342 ERG------------------ELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G + R + + G + E+E V + + + + A I + G E+ +V
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPK-VADAAVIGIPDEVAG-ELPRAYV 441
Query: 661 VLKKGFTSQPDKLKMIFSKAIQS--KLNPLFKVVPEFPRTASNKLL 704
VLK G ++K +K + +L V E P++ S K+L
Sbjct: 442 VLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 6e-21
Identities = 115/537 (21%), Positives = 179/537 (33%), Gaps = 137/537 (25%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL + +A AL + GD +A +P V++YLA G V+ I +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ LR ++A+ + +P
Sbjct: 62 ERELGFILRQARAR----------------------------VLFVPD------------ 81
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
++ F DY P D V +L++SGTTGEPK + T L+ +R
Sbjct: 82 --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 386 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 438
E L DV P+ L + G FL G L L G+ +
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175
Query: 439 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ +++ GVT + G D +R F G V +L
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP--VPREL--------- 224
Query: 499 AIIESC---GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------- 547
G ++ AY G P G P P
Sbjct: 225 --ARRAAEALGAKVVRAY--GMTEVPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVD 277
Query: 548 -DDQP----CVGEV-----GLFPLYLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGD 595
D GE+ LF LG D N + ++ +FR GD
Sbjct: 278 DDGNDVPPGEEGELQVRGPQLF---LGYLDPPDNTEAFTDDGWFRT------------GD 322
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655
+ + GY+ + GR D + GG S+ EIE + + ++ E A +++ G E
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHP-AVAEVAVVAMPDERLG-ER 380
Query: 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK--LNPLFKVVPEFPRTASNKLLRRVLRD 710
+ VV G + +L + +K +VV PRT S K+ + LR+
Sbjct: 381 VCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-20
Identities = 121/553 (21%), Positives = 178/553 (32%), Gaps = 164/553 (29%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL V +A L + GD + + +P VI+Y A+ G + V +
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A EI R S+AK D
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
+ F DY + + V S GTTG PK IP T L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171
Query: 386 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 442
AE +D G VY + + L + L G T+ L+ SP ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502
VT VP+L+ W + D + +R
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV------------------------ 262
Query: 503 SCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV------------------- 537
GG LS + G LQ Q FG M GLV
Sbjct: 263 --GGAPLSPELARRVEERLGCPLQ-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRP 313
Query: 538 --------ILDECGVPYPDDQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRG 581
I+D+ G P P GEVG Y A + A ++ ++R
Sbjct: 314 ISPADEIRIVDDQGEPVPP-----GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368
Query: 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641
GD+++ GY V GR D +N GG K S EIE + ++ +
Sbjct: 369 ------------GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHP-AVADA 415
Query: 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS------KLNPLFKVVPEF 695
A + + G E + FVV + G +L+ ++ KL +VV
Sbjct: 416 AVVGMPDEVLG-ERICAFVVPRGGAAPTLAELR----AFLREQGLAKFKLPDRLEVVDSL 470
Query: 696 PRTASNKLLRRVL 708
P T K+ ++ L
Sbjct: 471 PLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 9e-20
Identities = 155/660 (23%), Positives = 261/660 (39%), Gaps = 130/660 (19%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK--SKHGGTWLPGSVLNIA 176
S+ F + +++ PEA+W + I ++ +LD ++ ++ W G N+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNPPFAR----WFVGGRTNLC 55
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
+ H K +A++ DE T+++L ++V +A L ++ +GD
Sbjct: 56 HNAV--DRHLAKRPEQLALIAVSTETDEERT--YTFRQLHDEVNRMAAMLRSLGVQRGDR 111
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM A LA G + + FA+ +A R+ +K I + D RGG+
Sbjct: 112 VLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGK 171
Query: 296 KFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK---DFL 336
P Y +L A A P G DV LR Q L + ++L
Sbjct: 172 VVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA------ 390
S + P+Y IL++SGTTG+PK + R T G+A
Sbjct: 231 ESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVALATS 265
Query: 391 --HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQD 443
I K G+ + +++GWV+G I+++ L G +Y+G P G + V+
Sbjct: 266 MDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEK 325
Query: 444 AGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE-----TSN---------VDD 487
V + + P+ ++ + + L D + +R+ GE T++ V D
Sbjct: 326 YKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVID 385
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ W + W I+ G E +P G+ + +L+E
Sbjct: 386 NYWQTETGW--PILAIARGVE----------DRPTRLGSPGVPMYGYNVKLLNEV----- 428
Query: 548 DDQPC-VGEVGLF----PLYLGASDRLLNADHEEV--YFR--GMPMYKGMCLRRHGDIIK 598
+PC E G+ PL G + D V Y+ G +Y D
Sbjct: 429 TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF------DWGI 482
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
R GY + GR DD +N+ G + + EIE + ++ E A + V A G +V V
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG-QVAVA 540
Query: 659 FVVLKKGFTSQPDKLKMIFSKAI----QSKLNPLFK-----VVPEFPRTASNKLLRRVLR 709
FVV K + + ++ K I S+L + + V P+T S KLLRR ++
Sbjct: 541 FVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQ 600
|
Length = 629 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 4e-19
Identities = 127/580 (21%), Positives = 216/580 (37%), Gaps = 106/580 (18%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
L I + + RK + A+ + R TY EL E+V +ANAL +
Sbjct: 6 LTIGR---ILRHGARKHPDKEAVYFDGRR--------TTYAELDERVNRLANALRALGVK 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 290
KGD +A+ + + Y A+ G V+ I EIA L ++ + + +F+
Sbjct: 55 KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114
Query: 291 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + +L P V+ G+ PL + +++ L++ + P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 403
+ DA +L++SGTTG PK + + L W + L DVY +
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219
Query: 404 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ G P + + + GA + + L ++ VT VP++ +
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPTIWQML 269
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSL 518
+D++ +R G + + L K + +++ G TE S +
Sbjct: 270 LKAPRAYFVDFSSLRLVIYGG--AALPPALLREFKEKFGIDLVQGYGMTETSPV-VSVLP 326
Query: 519 LQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV---------GLFPLY 562
+ Q G ++ +AG I+D+ G P D VGE+ G Y
Sbjct: 327 PEDQLPGQWTKRR-SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQG----Y 381
Query: 563 LG---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
A+ ++ L GD+ GY+ + R D + GG
Sbjct: 382 WNRPEATAETIDGGW---------------LHT-GDVGYIDEDGYLYITDRIKDVIISGG 425
Query: 620 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 679
E+E ++ E A I V G + VVLK G T +L+
Sbjct: 426 ENIYPRELEDALY-GHPAVAEVAVIGVPDEKWGERPVA-VVVLKPGATLDAKELR----A 479
Query: 680 AIQSKLNPLFKV------VPEFPRTASNKLLRRVLRDQIK 713
++ +L FK+ V E PRT+ K+L+RVLR+Q
Sbjct: 480 FLRGRLAK-FKLPKRIAFVDELPRTSVGKILKRVLREQYA 518
|
Length = 521 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 7e-18
Identities = 82/384 (21%), Positives = 139/384 (36%), Gaps = 75/384 (19%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 415
++++SG+TG+PK + T +I C + LG G +L
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149
Query: 416 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
F++ L G TL + R +F+ VTV PSL+ +
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207
Query: 465 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 521
+R+ GE D W + N G TE +++ + + +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257
Query: 522 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 574
G T +LD PD +P V G VG L +G A L +
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305
Query: 575 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E + G + R GD+++ G + GR DD + + G + EIE V
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVL 365
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP---- 687
++ + + GG + LV F+ + +P + + ++ + P
Sbjct: 366 RALPGVVVAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV 423
Query: 688 --LFKVVPEFPRTASNKLLRRVLR 709
++ + E P TAS K+ R+ LR
Sbjct: 424 PSVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 9e-18
Identities = 112/441 (25%), Positives = 171/441 (38%), Gaps = 74/441 (16%)
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
L+ +L A L A+V+PA L DL +D S P+ D
Sbjct: 37 ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85
Query: 358 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 413
+ + F+SGTTG PK + T +S T W I L+ GD++ ++ GW
Sbjct: 86 PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142
Query: 414 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 470
F+ + GAT+ + R + ++ GVT P+ WR L D
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198
Query: 471 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
++R S GE N + + KAW I + G TE ++A I S Q G+
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 580
+V+LD+ G P GE+ GL Y+G ++ A Y
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
R GD R GY+ GRADD + S E+E +LE
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA-------LLE 352
Query: 641 TAAISVSPAGGGPE-----VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV---- 691
A++ + P+ V ++VLK G+ + +F+ ++ +L P +K
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAH-VRERLAP-YKRIRRI 410
Query: 692 --VPEFPRTASNKLLRRVLRD 710
V E P+T S K+ R LR
Sbjct: 411 EFVGELPKTISGKIRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-17
Identities = 123/530 (23%), Positives = 192/530 (36%), Gaps = 86/530 (16%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL+E+V NAL + + + + + + T + I G V V I
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 327
+ L S+A+ + + + + L P L+ IV+ G
Sbjct: 92 DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
LS+ +++ S D + L+SSG+TG PK + + TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191
Query: 388 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 444
+A L + DV L + G L+ GAT L P + ++
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 503
TV VP+L A D + +R S GE + ++ K + I++
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 561
G TE+ ++ +P A ++ G + ++DE G D GE+G
Sbjct: 310 IGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYEVKLVDEDGEEVAD-----GEIG---- 357
Query: 562 YLGASDRLLNADHEEVYFRG---MPMY-----------KGMCLRRHGDIIKRTVGGYIIV 607
E++ RG Y G R GD R GY
Sbjct: 358 --------------ELWVRGDSSAAGYWNRREKTRETFVGEWTRT-GDKYYRDEDGYYWY 402
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
GR+DD + + GI S E+E ++LE A + G FVVLK G+
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGA-EDEDGLTKPKAFVVLKDGYQ 460
Query: 668 SQPDKLKMI--FSKAIQSKLNPLFK------VVPEFPRTASNKLLRRVLR 709
P+ + F K KL P +K V E P+TA+ K+ R LR
Sbjct: 461 PSPELETELKDFVK---DKLAP-YKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 9e-17
Identities = 88/373 (23%), Positives = 145/373 (38%), Gaps = 40/373 (10%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 410
D + +++SGTTG PK +P + A +A+ IDL+ DV+ W + GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142
Query: 411 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
G + G T +G + ++ GVT P+ +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 470 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 527
K+R +S GE N + W + I + G TE L + G+
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261
Query: 528 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 584
+ +LD+ G P D GE G + + +S L +F G P
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308
Query: 585 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+ GD+++R GY GRADD + G + ++E ++ E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNP-LFKVVPEFP 696
A + V G E++ FVVLK+G+ + +L++ K + + P + VP P
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALP 426
Query: 697 RTASNKLLRRVLR 709
+T S K+ R +LR
Sbjct: 427 KTPSGKIQRFLLR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 89/449 (19%), Positives = 145/449 (32%), Gaps = 81/449 (18%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY+EL E+ +A L GD +A+ + + V+ LA++ AG V + ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L + A+ + T A A ++ + + L
Sbjct: 61 AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + P Y ++++SG+TG PK + T S + A
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 444
L D +L + +F + L GATL + ER +
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAII 501
VTVL PSL+ L + S GE L+ +
Sbjct: 212 PVTVLNLTPSLLAL------LAAALPPALASLRLVILGGE--------ALTPAL-VDRWR 256
Query: 502 ESCGGTELSSAY------IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPD 548
G L + Y + + A + + G L +LD+ P P
Sbjct: 257 ARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPV 316
Query: 549 DQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+G G+ YL L A G +Y R GD+++
Sbjct: 317 GVVGELYIGGPGVARGYLN--RPELTAERFVPDPFAGGDGARLY------RTGDLVRYLP 368
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR DD + + G + EIE
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAA 397
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 120/558 (21%), Positives = 193/558 (34%), Gaps = 129/558 (23%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
+A+V+ + +TY EL E+ +A L GD +A+ + + V+ L
Sbjct: 4 IALVYGDRS--------LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + ++ A +A L S A+ + T +
Sbjct: 56 AILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE----------------------- 92
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 369
L + + L ++ P VDA + ++++SG+TG
Sbjct: 93 ------------SLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTG 140
Query: 370 EPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428
PK + +R + I L D + + L + ++ + LNG L L
Sbjct: 141 RPKGVAVPHRGVVRLVRNTNY--IALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLI 198
Query: 429 QGSPLERS--FGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSN 484
L + + + GVTVL +L + L GL R G+ +
Sbjct: 199 DKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEALAGL-----RQLLVGGDVLS 253
Query: 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAG-------- 535
A ++ +C G L + Y G P FST +T
Sbjct: 254 P---------AHVRRVLAACPGLRLINGY--G----PTENTTFSTCHVITRLDEAADSIP 298
Query: 536 ---------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYF 579
+ ILDE G P P P VG GL YL + L A +
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPE--LTAERFVPDP--FG 354
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639
G +Y R GD+ + G I GR D + + G + EIE+ Q +
Sbjct: 355 PGERLY------RTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPG--V 406
Query: 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP---------LFK 690
AA+ V G + LV +VV + + +++ L F
Sbjct: 407 REAAVLVREDAAGDKRLVAYVVARGALDAA----------ELRAHLAERLPAYMVPAAFV 456
Query: 691 VVPEFPRTASNKLLRRVL 708
V+ E P TA+ K+ RR L
Sbjct: 457 VLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 91/376 (24%), Positives = 141/376 (37%), Gaps = 52/376 (13%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 411
D + L++SGTTG+PK + + AE +A + L+ GD + + +G
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 412 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 470
+LF F GA+ L G P E + TVL VP+L +A + +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 529
+R S GE + L I++ G TE+ +I P A +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262
Query: 530 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 582
G ++DE G P G++ L P Y ++ +
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
R GD R G+ QGRADD + + G S +E+E + ++ E A
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE-HPAVAEAA 366
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFK------VVP 693
++V P G L FVV + G Q + + + L +K +
Sbjct: 367 VVAV-PDEDGLVRLKAFVVPRPGEAIQQ-----LLERDLHRFLRERLAPYKCPRQIEFLD 420
Query: 694 EFPRTASNKLLRRVLR 709
PRTA+ KL R LR
Sbjct: 421 TLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 129/566 (22%), Positives = 207/566 (36%), Gaps = 120/566 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
H + N +AI + +TYK+ E V VAN L+ SK IAI +
Sbjct: 8 KKHASLQPNKIAIKENDRV--------LTYKDWFESVCKVANWLNEKESKNKTIAILLEN 59
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+ + ++ +AG+ V + + E+ RL +S A I T+ + L
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLN---------- 109
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
L I D WK + Y P Y+P+ N +A +
Sbjct: 110 -----DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAPIENVQNAPFYMG 149
Query: 363 FSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS- 418
F+SG+TG+PKA Q S S C D + + V+ L S
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS--VLIAGTLVHSL 197
Query: 419 FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKAWRNTNCL------ 465
FL GA LY G L R F ++ ++V+ TVP+++++ N +
Sbjct: 198 FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIENKMK 257
Query: 466 ---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLL 519
G W + + N+ + +K + E G +ELS + + S
Sbjct: 258 IISSGAKWEAE----AKEKIKNI----FPYAKLY-----EFYGASELSFVTALVDEESER 304
Query: 520 QPQAFG-AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+P + G F V + C + Q GE+G +Y+ + + V
Sbjct: 305 RPNSVGRPFHN-------VQVRICNEAGEEVQK--GEIGT--VYVKSPQFFMGYIIGGVL 353
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
R + M +R G + G+I + GR + + GGI EIE V + +
Sbjct: 354 ARELNADGWMTVRDVGYEDEE---GFIYIVGREKNMILFGGINIFPEEIESVLHEHPA-V 409
Query: 639 LETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------ 691
E I V G V +I K T Q +LK +L+ FK+
Sbjct: 410 DEIVVIGVPDSYWGEKPVAII----KGSATKQ--QLK----SFCLQRLSS-FKIPKEWHF 458
Query: 692 VPEFPRTASNKLLRRVLRDQIKHELS 717
V E P T S K+ R + I+++
Sbjct: 459 VDEIPYTNSGKIARMEAKSWIENQEK 484
|
Length = 487 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 114/545 (20%), Positives = 203/545 (37%), Gaps = 109/545 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+TY++L + ++ + + +G+ I I +P +V + LA++LAG V V + +
Sbjct: 8 LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 327
+ + + + K + T R F L L+ +V+ G + LR
Sbjct: 68 EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114
Query: 328 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 379
+ +S D FL++ P + D ILF+SG+ G PK + + L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 430
++I A A IDL DV ++G + LF +F L L +Y
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219
Query: 431 SPLE-RSFGKFVQDAGVTVLGTVPSLVKAW-RNTNCLEGLDWTKIRSFASTGETSNVDDD 488
+PL+ + + ++D T+L P+ ++ + RN + D++ +R G + +
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRGYARNAH---PEDFSSLR-LVVAG-AEKLPEA 274
Query: 489 LWLSSKAWYN----AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGLVI-- 538
+ + I+E G TE S P + +T T G +
Sbjct: 275 T---RELFEEKFGIRILEGYGATECS----------PVI--SVNTPMGNKPGTVGRPLPG 319
Query: 539 LDECGVPYPDDQPC-VGEVGL--------FPLYLGASDR--LLNADHEEVYFRGMPMYKG 587
++ V + +GE GL YL ++ + + Y
Sbjct: 320 IEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWY--------- 370
Query: 588 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
GDI K G++ + GR +GG S +E + + AA+ V
Sbjct: 371 ----DTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--VPEFPRTASNKLLR 705
G E +V+ + P++L I +A L K+ V E P S K
Sbjct: 427 DEKKG-EKIVLLTTTEDL---DPEELNAILREAGLPNLAVPRKILHVDEIPLLGSGKTDY 482
Query: 706 RVLRD 710
R L+
Sbjct: 483 RGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-16
Identities = 92/339 (27%), Positives = 143/339 (42%), Gaps = 57/339 (16%)
Query: 166 TWLPGSVLNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
+WL +NIA + + K VA+ + D S TYKEL+E
Sbjct: 35 SWLETGKVNIAYEAIDRHADGGRKDK----VALRYL----DASRKEKYTYKELKELSNKF 86
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
AN L + KGD + I MP L + G +V + ++F + RL S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K + T +L K P LK ++L +G DV +D
Sbjct: 147 KVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LD 185
Query: 341 YHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHID 393
++ S ++ D IL ++SG+TG+PK + + ++ G + +D
Sbjct: 186 FNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LD 242
Query: 394 LKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVL 449
L DVY W T + GWV G +F+ +LNGAT + G SP ER + ++D VTV
Sbjct: 243 LHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVW 299
Query: 450 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 484
T P+ L+ A + ++ D + +R S GE N
Sbjct: 300 YTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336
|
Length = 570 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 95/381 (24%), Positives = 149/381 (39%), Gaps = 48/381 (12%)
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408
V + D + + F+SGTTG PK + T T W +DL+ D++ + GW
Sbjct: 77 VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133
Query: 409 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
G LF+ +L GA + +Y G ER+ ++ GVT P+ + + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191
Query: 466 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D++ +R S GE N + D W A I + G TE + +
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 575
G+ + I+D+ G P + G++ GLF YL + +
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
E RG Y GD + GY GRADD + G + E+E +
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-----F 689
+ E A + P G EV+ FVVL G+ ++L + ++ + P
Sbjct: 354 A-VAEAAVVGSPDPVRG--EVVKAFVVLAPGYQP-SEELAKELQEHVKKRTAPYKYPREI 409
Query: 690 KVVPEFPRTASNKLLRRVLRD 710
+ V E P+T S K+ R LR
Sbjct: 410 EFVEELPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 89/392 (22%), Positives = 136/392 (34%), Gaps = 99/392 (25%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 412
IL++SGTTG PK + T + + L+ DV P
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138
Query: 413 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTV---LGTVPSLV-----KAWRNTN 463
++++ L GATL L S F V+ G TV LG + +++ +
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH 196
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIESCGGTELSSAYIQGSLL 519
L + + +W A+ ++E G TE I
Sbjct: 197 PL-----RFVFGAP-------LPAAIW---PAFEERFGVKLVEGYGMTETGVPIIAP--G 239
Query: 520 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV--------GLFPLYLG 564
P G + G I+DE G P + GE+ +F Y G
Sbjct: 240 DPAPPG-------SCGRPRPGVEVRIVDEDGREVPPGEV--GELVVRPRRPWAMFKGYYG 290
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
+ A +R H GD +R G++ R D + G S
Sbjct: 291 MPEATAKA------WRN--------GWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENIS 336
Query: 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683
S E+E A ++ E A ++V G EV VVL+ G T P+ L + F +
Sbjct: 337 SYEVEAAI-LAHPAVAEAAVVAVPSELGEDEVKA-VVVLRPGETLDPEAL-LEFCRD--- 390
Query: 684 KLNPLFKV------VPEFPRTASNKLLRRVLR 709
+L P F V V E P+T + K+ + LR
Sbjct: 391 RL-PYFMVPRYIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 119/532 (22%), Positives = 206/532 (38%), Gaps = 77/532 (14%)
Query: 211 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+++EL AN L +GD +A+ +P ++ +A I G V +
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A++I RL+ SKAK I T D + A + +I + L
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 383
+ S +L ++ S + V I F+SGTTG PK + S +
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 441
G +DL D+ ++ GW+ + LFS ++ GA + ++ + + + +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTL 262
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-- 499
+T + P++ + + L + +R + GE N + + W
Sbjct: 263 SKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTG 316
Query: 500 --IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555
+ E G TE L A +G ++P G+ A+ + I+D+ G P G+
Sbjct: 317 LDLYEGYGQTETGLICANFKGMKIKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GD 371
Query: 556 VG----------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
+G LF Y+ ++ + Y G D GY
Sbjct: 372 IGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITG-------------DRGIMDEDGYF 418
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
GRADD +N G + E+E + +++E+A +S SP EV+ FVVL
Sbjct: 419 WFVGRADDVINSSGYRIGPFEVESALIE-HPAVVESAVVS-SPDPIRGEVVKAFVVLAPQ 476
Query: 666 FTSQ-PDKLKMIFSKAIQSKLNPL-----FKVVPEFPRTASNKLLRRVLRDQ 711
F S P++L + ++S P + V E P+T + K+ R LRD+
Sbjct: 477 FLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 7e-15
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL V +A L KGD + + P ++ +++LA++ AG VV+ A+
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91
Query: 269 -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327
EIA +++ S AK T L K+ A ++L + +
Sbjct: 92 TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 384
+ + + P V D + +SSGTTG K + T ++++
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 440
G + DV + + G + L L G+ + KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241
Query: 441 ---VQDAGVTVLGTVPSLVKA 458
++ VT L VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-15
Identities = 85/363 (23%), Positives = 131/363 (36%), Gaps = 33/363 (9%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
I+++SG+TGEPK + + + +++L D + G L ++F
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
G TL L R K + +T VP+ + L D+ +R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 537
L L + G TE S Y+ L +P + G A L
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183
Query: 538 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 588
++DE D C GEVG Y + E R P+ +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS- 647
L GD+++ GY+ GR DD + G + S EIE V + E A I V
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL-VAEAAVIGVPD 289
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRR 706
P G + +V VV G + +L K + + + P V P+ A+ K+ R
Sbjct: 290 PLLG--QAIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRS 347
Query: 707 VLR 709
LR
Sbjct: 348 ALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 89/374 (23%), Positives = 149/374 (39%), Gaps = 53/374 (14%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 411
D V I F+SGTTG PK I + + L+ DV+ L + +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 470
++LF + + L Q +P K +Q+ T+L T P+ A+R ++ D
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 524
+ +R S GET + +W + WY II+ G TE+ +I + +P A
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G A I+D+ G P GE G + R L+ + ++ Y R
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GDI ++ GY R+DD + G ++ E+E + E A I
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT-HPDVAECAVI 419
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNPL-----FKVVPEF 695
V P +++ +VL+ G ++ +L ++ +Q + + P V
Sbjct: 420 GV-PDEERGQIVCAHIVLRDG--TKATEL---LAERLQDFVKAVIAPYKYPREINFVDAL 473
Query: 696 PRTASNKLLRRVLR 709
P+T + K+ R LR
Sbjct: 474 PKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 95/384 (24%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 418
+ F+SGTTG+PK + + + A +DL+ DVY W T + GWV G + +
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 476
LNG TL + +G + +++ VTV T P+ ++ D + +R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 477 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 524
AS GE N + +W W+ AI I + G + GS+ +P
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 577
A + D Q VGE+ L F YLG +R
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637
F Y GD+ R GY GRADD + G E+E
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESA------- 361
Query: 638 ILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVV 692
++E A++ + G P E++ FV L+ GF ++L+ + +L V
Sbjct: 362 LMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP-SEELRRELLTFARQRLGA--AVA 418
Query: 693 P-------EFPRTASNKLLRRVLR 709
P P+T S K++RR+L+
Sbjct: 419 PREIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 4e-14
Identities = 119/542 (21%), Positives = 216/542 (39%), Gaps = 71/542 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ++V AN L + KGD +AI +P +AVI Y +LAG +VV +
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK I D + FP + V A ++ +++ I + + P +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160
Query: 329 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 370
+L + + + V + ++ V V+ V + ++ GTTG
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220
Query: 371 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427
PK + T + + T G W + + +V V G ++ S + G + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280
Query: 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
++ F + ++ VT+ P++ A N+ L+ D + IR+ S V+
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV 339
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ ++E G TE S L + + G+ GVP+P
Sbjct: 340 QEKFETVTG-GKLVEGYGLTESSPVTHSNFLWEKRVPGSI---------------GVPWP 383
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR-------------RHG 594
D + + + L + L + E+ +G + KG + G
Sbjct: 384 DTEAMI-------MSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTG 436
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654
D+ G+ V+ R D + G E+E V + ++ + E I V G E
Sbjct: 437 DVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK-VQEVVTIGVPDPYRG-E 494
Query: 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNKLLRRVLRDQIK 713
+ FVVLK+G ++L K + + K+ +++ E P+T K+LRRVL ++ K
Sbjct: 495 TVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEK 554
Query: 714 HE 715
+
Sbjct: 555 RK 556
|
Length = 563 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 121/519 (23%), Positives = 202/519 (38%), Gaps = 60/519 (11%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL QV + AL + + + + + M V I +L I AG V V++
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 327
A + A L S+A+ +F +L P+ LG +P L+ V+ E
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVG-----RPEAGE 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
L+ + L++ + P D L+SSG+TG PK + T S+ TAE
Sbjct: 140 VQLA--ELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAE 191
Query: 388 GWAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+A + ++ DV L + +G + F + GAT L P + ++
Sbjct: 192 LYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRR 250
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIE 502
T+ VP+L A L D ++R S GE + ++ +A + I++
Sbjct: 251 HQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVD 308
Query: 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFP 560
G TE+ ++ P ++ G L ++ + G GE G
Sbjct: 309 GIGSTEMLHIFLSN---LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAA-----GEPGELL 360
Query: 561 LYLGASDRLL--NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ +S + N F+G R GD R G GR DD + +
Sbjct: 361 ISGPSSATMYWNNRAKTRDTFQGE-------WTRSGDKYVRNDDGSYTYAGRTDDMLKVS 413
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGG--GPEVLVIFVVLKKGFTSQPDKLKMI 676
GI S EIE ++LE A + V G P+ F+VL+ G L+
Sbjct: 414 GIYVSPFEIESAL-IQHPAVLEAAVVGVEDEDGLIKPKA---FIVLRPGQDI-DTALETE 468
Query: 677 FSKAIQSKLNPL-----FKVVPEFPRTASNKLLRRVLRD 710
+ ++ +L P V + P+TA+ K+ R LR+
Sbjct: 469 LKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 104/402 (25%), Positives = 142/402 (35%), Gaps = 104/402 (25%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 410
D I ++SGTTG PK T + + A L GD P L G V+
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 462
G + +S GATL L + KF ++ +T L VP++ A
Sbjct: 61 G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104
Query: 463 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 515
LE D+ K +R+ S G + V +L + + I G TE S Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161
Query: 516 GSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNAD 573
S P + T G + E + PD GEVG
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG---------------- 200
Query: 574 HEEVYFRGMPMYKG---------------MCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
E+ RG + KG L GD+ GY+ + GR D + G
Sbjct: 201 --EICVRGYSVMKGYYNDPEATAEAIDADGWLHT-GDLGYMDEDGYLRIVGRIKDMIIRG 257
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 673
G EIE + E A + V P EV+ FVVLK G T ++L
Sbjct: 258 GENIYPAEIEEALLTHPA-VAEAAVVGV------PDERLGEVVAAFVVLKPGATLTEEEL 310
Query: 674 KMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRRVLR 709
+ +L FKV V E PRTAS K+ + LR
Sbjct: 311 I----AFCRGRLAR-FKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 5e-13
Identities = 96/387 (24%), Positives = 143/387 (36%), Gaps = 78/387 (20%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
D IL++SGTTG PK + T + + A +DL GDVY L + P L
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51
Query: 416 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 467
+ + L AL G L F ++ VT VP++ +
Sbjct: 52 YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111
Query: 468 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 524
D + +R + + +L + W+ + + G TE +LL P+ +
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166
Query: 525 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
G+ + I+DE G P GEVG E+ RG
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
M Y LR GD+ GY+ + R D + GG E+E
Sbjct: 204 AVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263
Query: 630 VCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
V ++ + A I V G E +V VVL+ G T ++L F + +L
Sbjct: 264 VLLA-HPAVADVAVIGVPDEEWG--EAVVAVVVLRPGATLDAEELIA-FCRE---RLAG- 315
Query: 689 FKV------VPEFPRTASNKLLRRVLR 709
+KV V E PR AS K+L+R LR
Sbjct: 316 YKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 49/373 (13%)
Query: 361 ILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
++++SGTTG PK +P +L + + GDV+ P + W+
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELY--------FEL-APRPGDVFWTPADWAWI 143
Query: 410 MGPV-ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + G + Y+ ER+F ++ GVT P+ +K R
Sbjct: 144 GGLLDVLLPALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526
++R+ AS GE+ + W + + E G TE + + L P G+
Sbjct: 203 ARYDLRLRAVASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGS 261
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGM 582
+ ++D+ G P P GEVG + L N + F G
Sbjct: 262 MGKPVPGHEVAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
+ GD+ +R GY+ +GRADD + G + EIE C ++LE A
Sbjct: 317 WL-------LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEE-CLLKHPAVLEAA 368
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEFPR 697
+ V G E++ FVVL +G D+L + ++S+L + V E P
Sbjct: 369 VVGVPDPERG-EIVKAFVVLAEGVEP-SDELATELQELVKSRLAAHEYPREIEFVDELPM 426
Query: 698 TASNKLLRRVLRD 710
T + K+ RR LR
Sbjct: 427 TTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 6e-13
Identities = 102/500 (20%), Positives = 179/500 (35%), Gaps = 89/500 (17%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVR 245
+ + VA++++E +TY+EL E+V +A+ L GD +AI
Sbjct: 27 KDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPE 82
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD------FILRGGRKFPL 299
I LAI+ G V V I + ++A L S++K IF ++ + +
Sbjct: 83 WAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKV 142
Query: 300 YSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354
++ ++ V + D GI L D S R P
Sbjct: 143 VDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SAGLEGRIAPPKP---- 190
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVY-CW-PTNLGWVMG 411
D + I+++SGTTG PK + T + + A + + GD + P L +
Sbjct: 191 -DDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLP--LAHIFE 247
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL------------VKAW 459
L G L++ P R+ + +++ TV+ VP + KA
Sbjct: 248 RAFEGGLALYGGVTVLFKEDP--RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAP 305
Query: 460 RNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 518
L + + L ++ + + I ++ GG + A G+
Sbjct: 306 AVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGG-RIRYALSGGAP 364
Query: 519 LQPQAFGAFSTA-----------TMTAGLVILDECGVPYPDDQPCVGEVG-LFPLYLGAS 566
L P+ F + T T+ +V ++ P D+ +G VG P G
Sbjct: 365 LSPEL-LHFFRSLGIPILEGYGLTETSAVVSVN------PPDRFVLGTVGKPLP---GIE 414
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLR--------------RHGDIIKRTVGGYIIVQGRAD 612
++ AD E+ RG + KG R GD+ + GY+++ GR
Sbjct: 415 VKI--ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKK 472
Query: 613 DTMNL-GGIKTSSVEIERVC 631
+ + L G + IE
Sbjct: 473 ELIKLSNGKNIAPEPIESKL 492
|
Length = 613 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 107/451 (23%), Positives = 171/451 (37%), Gaps = 90/451 (19%)
Query: 304 LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 355
L A+ L A++ A +G+D R F++S D P P
Sbjct: 81 LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
+ V ILF+SGT+G+PK + ++ +++ TA N G V+G V
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175
Query: 416 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 454
SSFL G ++ + G +R+ G+ G+T VP
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235
Query: 455 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 512
+ +A+R + + + + G +D L W + I G +S A
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290
Query: 513 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 563
+ +++ +A GA T T ++D+ G P P GE+ L P Y
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
A + +FR GDI +R G+ V R D GG
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395
Query: 624 SVEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI- 681
EIE V AD I E A + ++ A G EV + +V G ++++ S +
Sbjct: 396 PAEIEAVL--ADHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLA 452
Query: 682 QSKLNPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ K+ ++V PRTAS KL + LRD +
Sbjct: 453 KYKVPKHLRLVDALPRTASGKLQKARLRDAL 483
|
Length = 488 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 90/387 (23%), Positives = 140/387 (36%), Gaps = 75/387 (19%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV-YCWPTNLGWVMG 411
D IL +SGTTG PK +P T L+S R A+ L D VM
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK---LTPSDRCLN-------VMP 51
Query: 412 P-------VILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 461
V L ++ L G ++ P + S KF + VT VP++ +
Sbjct: 52 LFHIHGLIVSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLK 107
Query: 462 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI------ 514
T G ++R F + L K + ++E+ G TE +
Sbjct: 108 TAKPNPGKPPPRLR-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP 166
Query: 515 ----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 565
GS+ +P + ILD+ G P P Q GE+ + YL
Sbjct: 167 LVRKPGSVGRPAG----------VEVAILDDDGRPLPPGQ--EGEIVIRGPNVTAGYLNN 214
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+ A + +FR GD+ GY+ + GR + +N GG K S
Sbjct: 215 PEANREAFRDG-WFRT------------GDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS- 683
E+E V + + E V G E + VVL+ ++L+ K + +
Sbjct: 262 EVEEVLLRHPA-VAEAVVFGVPDELYG--EEVAAAVVLRADSKVTIEELRDFARKRLAAF 318
Query: 684 KLNPLFKVVPEFPRTASNKLLRRVLRD 710
K+ V P+ A+ K+ RR L +
Sbjct: 319 KVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-11
Identities = 121/573 (21%), Positives = 188/573 (32%), Gaps = 178/573 (31%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVR 245
K + A+V D +TY EL+E+ +A L + GD +A+ +
Sbjct: 2 AKHPDRPALVVGGDT--------LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPD 53
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
A LA + AG V + S A R+ K+L
Sbjct: 54 AYAAILACLKAGAAYVPLDPSQPA----ERIA------------------------KILE 85
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
AA A+V P Y ILF+S
Sbjct: 86 AAGPAALV---------------------------ADPDDLAY------------ILFTS 106
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------- 414
G+TG+PK + + S + W D + + G V
Sbjct: 107 GSTGKPKGVQISHANLASFL-----DWMVEDFDLTE------------GDVFSNQAPFSF 149
Query: 415 ------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
LF + +GATL + PL +F+++ G+TV +VPS +
Sbjct: 150 DLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWVSVPSFASLLLLSRE 207
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSA--YIQGS 517
L +R+F GE +KA II G TE + A + +
Sbjct: 208 LNPESLPSLRTFLFCGEVLPKKL-----AKALRRRFPNARIINLYGPTEATVAVTAYEVT 262
Query: 518 LLQPQAFG------AFSTATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDR 568
+ILDE G P P + + + P YL ++
Sbjct: 263 PEPLSRNEPLPIGYPKPGLR----ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEK 318
Query: 569 LLNADHEEVYFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
+ +F+ G Y R GD++ G ++ GR D + L G + +E
Sbjct: 319 -----TAKAFFQDEGQRWY------RTGDLVYLEDDGLLVYLGRKDFQIKLHGYR---IE 364
Query: 627 IERVCDQADESIL------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 680
+E + E+ L E A + P G LV FVV K+G LK K
Sbjct: 365 LEEI-----EAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALD-TKALK----KE 414
Query: 681 IQSKLNP-----LFKVVPEFPRTASNKLLRRVL 708
++ +L P F + P A+ K+ R+ L
Sbjct: 415 LKKRLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 3e-11
Identities = 94/451 (20%), Positives = 151/451 (33%), Gaps = 70/451 (15%)
Query: 199 EDRCDESAVNL----MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAI 253
D A+ +TY EL + +A L G+ +AI ++ V+ LA+
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAV 297
Query: 254 ILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313
+ AG V + + A +A L S+ + TQ
Sbjct: 298 LKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA------------------------- 332
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+DVG+P D + + + P DA+ I+++SG+TG+PK
Sbjct: 333 -HLRVDDVGLPGLALDDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKG 383
Query: 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQ 429
+ + + A L D +L + +F + L GA L L Q
Sbjct: 384 VRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQ 443
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
P + ++ G+TVL VP L++ ++R S GE +
Sbjct: 444 VDPAA--LLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLAL 501
Query: 488 DLWLSSKAWYNAIIESCGG-----TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
L A + + G + S I L G T L ILD+
Sbjct: 502 VQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQ---LYILDQ- 557
Query: 543 GVPYPDDQPC--VGEVGLFPLYLGASDRLLNADH-EEVYFRGMPMYKGMCLRRHGDIIKR 599
P GE+ + L L A L D E + +Y R GD+ +
Sbjct: 558 ---GLRPLPLGVPGELYIAGLGL-ALGYLNRPDLTAERFIAL-RLY------RTGDLARP 606
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR D + + G + EIE
Sbjct: 607 LADGALEYLGRKDSQVKIRGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 90/377 (23%), Positives = 140/377 (37%), Gaps = 44/377 (11%)
Query: 356 DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ++++SG+TG+PK AI L++ C + L D + + +G
Sbjct: 656 DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713
Query: 414 ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
LF + +GATL L + +F + D GVTVL VPS ++A + +
Sbjct: 714 ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 530
R+ GE VD + + +I G TE + L + + FG
Sbjct: 772 PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831
Query: 531 TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 584
A GL ILD P P VGE LY+G A F P
Sbjct: 832 QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884
Query: 585 -YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643
G L R GD+ + G I GR D + + G + EIE A + E
Sbjct: 885 GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE-ARLLAQPGVREAVV 943
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEF-------- 695
++ G LV ++V ++++L +V+P++
Sbjct: 944 LAQPGDAG--LQLVAYLVPAAVADGAE---HQATRDELKAQLR---QVLPDYMVPAHLLL 995
Query: 696 ----PRTASNKLLRRVL 708
P T + KL R+ L
Sbjct: 996 LDSLPLTPNGKLDRKAL 1012
|
Length = 3956 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 117/527 (22%), Positives = 195/527 (37%), Gaps = 63/527 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY + +V +ANAL+++ GD +A T R + +Y A+ G V+ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 328
+IA + ++ K IF D L PL + P +KA+V+ + L
Sbjct: 87 EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 383
++++ L P Y P + A + ++SGTTG PK + ++ S +
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+ L D + V + +++ + GA L L S +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501
VTV VP++ N G D + +R G L K +I
Sbjct: 252 EKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSAL----PRSLIEKLEERGVEVI 307
Query: 502 ESCGGTELS----SAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQ 550
+ G TE S + ++ L+ G I+D+ G P D
Sbjct: 308 HAWGMTETSPLGTVSRLKPHLVDLPEEEKLE-LRAKQGRPVPGVELRIVDDEGNELPWDG 366
Query: 551 PCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
VGE+ + Y + + E R R GD+ GYI
Sbjct: 367 KTVGELVVRGPWVTGSYYK------DPEKTEELTRDGWF-------RTGDVAVIDEDGYI 413
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK 664
+ RA D + GG SSVE+E ++ E A + V G E + VVLK
Sbjct: 414 QITDRAKDVIKSGGEWISSVELENALMAH-PAVAEAAVVGVPHEKWG--ERPLAVVVLKP 470
Query: 665 GFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRD 710
G ++L +K + P V E P+T+ K ++ LR+
Sbjct: 471 GAKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 7e-11
Identities = 85/392 (21%), Positives = 133/392 (33%), Gaps = 88/392 (22%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 415
++++SG+TG PK + + A L GD + W +
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152
Query: 416 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
F L+GATL L P + +++ +TVL VPSL++A + L
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 525
+R GE E G L +AY + + +
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258
Query: 526 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 575
++ G + +LDE P P P +G G+ YL + L A+
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315
Query: 576 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD-------TMNLGGIK 621
F G +Y R GD+ + G + GRADD + LG
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG--- 363
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 681
EIE A + E A + G G + LV +VV G +L+ +
Sbjct: 364 ----EIEAAL-LAHPGVRE-AVVVAREDGAGEKRLVAYVVPAAGAELDAAELR----AFL 413
Query: 682 QSKLNP-----LFKVVPEFPRTASNKLLRRVL 708
+L F V+ P T + K+ R+ L
Sbjct: 414 AERLPDYMVPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
A+V+ + R TY+E ++ +A+AL + KGD +A+ P T + +
Sbjct: 21 TAVVYGDRR--------YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHF 72
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLK 310
+ +AG V+V + A +IA L S+AK +F Q+F L + L K
Sbjct: 73 GVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTK 125
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTT 368
I+ I ++ ++D L+ D P P D +++ ++SGTT
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTT 179
Query: 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402
G PK + +T + + VY W
Sbjct: 180 GNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 134/570 (23%), Positives = 199/570 (34%), Gaps = 138/570 (24%)
Query: 211 TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY L +AN L GD +A +P IIYLA + G V V + S+
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 270 REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
E+ L +AK F D IL + P +++G L PA
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 376
LS ++ Y P+ + D + +LF+SGT G PK +
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207
Query: 377 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433
T L+S R YC NL W V + + L AT L+
Sbjct: 208 THNNILASER---------------AYCARLNLTW--QDVFMMPAPLGHATGFLH----- 245
Query: 434 ERSFGKFVQDAGVT---VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
GVT ++G L+ + CL L+ + R G T + D L
Sbjct: 246 -----------GVTAPFLIGARSVLLDIFTPDACLALLE--QQRCTCMLGATPFIYDLLN 292
Query: 491 LSSKAWYNAIIES-----CGGTELSSAYIQ-----GSLLQPQAFGAFSTATMTAGLVILD 540
L K + + + CGGT + + G L +G ST + +V LD
Sbjct: 293 LLEKQPAD--LSALRFFLCGGTTIPKKVARECQQRGIKLL-SVYG--STESSPHAVVNLD 347
Query: 541 EC--------GVPYP-------DDQ----PCVGEVG--------LFPLYLGASDRLLNAD 573
+ G D+ P G G +F YL + A
Sbjct: 348 DPLSRFMHTDGYAAAGVEIKVVDEARKTLPP-GCEGEEASRGPNVFMGYLDEPELTARAL 406
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
EE ++ Y GD+ + GYI + GR D + GG SS E+E + Q
Sbjct: 407 DEEGWY-----YS-------GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQ 454
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP--DKLKMIFSKAIQSKLNP-LFK 690
I + +++ G E +VVLK S + + K + P
Sbjct: 455 H-PKIHDACVVAMPDERLG-ERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIV 512
Query: 691 VVPEFPRTASNKLLRRVLRDQIKHELSVRS 720
V+ + PRTAS K+ + +LR I L+
Sbjct: 513 VIDKLPRTASGKIQKFLLRKDIMRRLTQDV 542
|
Length = 547 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 120/515 (23%), Positives = 181/515 (35%), Gaps = 64/515 (12%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY ELR +V VA L +A+ P +V AVI LA+ G V +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + I RG + + V+ A V+ AI G +R
Sbjct: 89 PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSS---IR 383
L L P P P + ++SGTTG PK IP S
Sbjct: 127 ALGDLVGLG-EPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGAVIPQRAAESRVLFM 184
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFV 441
T G H +V L V+G V++ + L+G + + + P + K +
Sbjct: 185 STQAGLRHGR---HNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADAL--KLI 239
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
+ VT L P+ + A L + G T D L ++ +
Sbjct: 240 EQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKV 298
Query: 502 ESCGGTE-LSSAYI----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556
G TE ++S Y+ G+ ++P G FS + DE + + V
Sbjct: 299 NIYGTTEAMNSLYMRDPRTGTEMRP---GFFSEVRIVRIGGSPDEALPNGEEGELVVAAA 355
Query: 557 -GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 615
F YL + Y R D+ G + + GR DD +
Sbjct: 356 DATFTGYLNQPQATAEKLQDGWY-------------RTSDVAVVDPSGTVRILGRVDDMI 402
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
GG E+ERV +A + E I + G + + VV ++G T D L
Sbjct: 403 ISGGENIHPSEVERVLGRA-PGVTEVVVIGLPDERWG-QSVTACVVPREGETLSADALDT 460
Query: 676 --IFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVL 708
S+ K + + E P+ A NK+LRR L
Sbjct: 461 FCRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-10
Identities = 127/578 (21%), Positives = 199/578 (34%), Gaps = 124/578 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241
++H + + +A++ E R ++Y EL ++ +A L + GD + + +P
Sbjct: 35 TDHAARYPDRIAVIDGERR--------LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP 86
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
I + A++ G V S A E+ +A + G P
Sbjct: 87 NVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFAR 145
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+++ P V+ + + P + HP + V
Sbjct: 146 ELVAKHPTLRHVI--VAGEAEHPSVLEAAL---------CHPAGLFTPAPPADAGEVAFF 194
Query: 362 LFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVY--CWPTNLGWVMGPVILF 416
S GTTG PK IP T S+R +AE VY P + +
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNFPLSSPGAL 251
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
FL G T+ L E F ++ GVTV VP L
Sbjct: 252 GVFLAGGTVVLAPDPSPELCF-PLIERHGVTVTALVPPLAS------------------- 291
Query: 477 ASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYIQ------GSLLQPQAFG 525
LWL + W A + S GG LS+ + G LQ Q FG
Sbjct: 292 ------------LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQ-QVFG 338
Query: 526 AFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFPLYLGASDRLL--- 570
M GLV I+ G P PDD+ V + P+ G LL
Sbjct: 339 ------MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRG 392
Query: 571 --------NAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
A H F Y R GD+++R GY++V+GR D +N GG K
Sbjct: 393 PYTIRGYYRAPEHNARAFDADGFY------RSGDLVRRDPDGYLVVEGRVKDQINRGGEK 446
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLV-----IFVVLKKGFTSQPDKLKMI 676
++ E+E +L A+ + P+ L+ F+V+K+ +L+
Sbjct: 447 IAAEEVE-------NLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAA-QLRRF 498
Query: 677 FSKA--IQSKLNPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ KL + V P TA K+ ++ LR ++
Sbjct: 499 LRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRL 536
|
Length = 542 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 111/523 (21%), Positives = 176/523 (33%), Gaps = 112/523 (21%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+++L + +A AL G +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E +L + + T L K A L I E
Sbjct: 61 NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
LS +D + ++F+SGTTG+PKA+P T + +A G
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143
Query: 390 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD---A 444
+L + W +L + G ILF + GATL + F + ++
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK------FNQLLEMIANE 196
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-AIIES 503
VT + VP+ + + EG +R G + Y I S
Sbjct: 197 RVTHISLVPTQLNRLLD----EGGHNENLRKILLGGSAIPAP---LIEEAQQYGLPIYLS 249
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--------DDQPCVGE 555
G TE S T L + G P D++ GE
Sbjct: 250 YGMTETCSQ---------------VTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGE 294
Query: 556 V-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
+ L YL + L A ++ +F GDI + G++ V GR
Sbjct: 295 IMVKGANLMKGYLYQGE-LTPAFEQQGWFNT------------GDIGELDGEGFLYVLGR 341
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
DD + GG EIE V Q ++ A + P +V V ++V S
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHPG--IQEAVVVPKPDAEWGQVPVAYIV----SESDI 395
Query: 671 DKLKMIFSKAIQSKLNPL-----FKVVPEFPRTASNKLLRRVL 708
+ K+I + KL F+ + E P AS K+LR L
Sbjct: 396 SQAKLIAY--LTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 125/564 (22%), Positives = 220/564 (39%), Gaps = 104/564 (18%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 259
+TY +L E+V + L + SK D + I M T+ +I L+ ++ GY
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 315
V S+ D I +L ++ GI + I F + A L V+
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203
Query: 316 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 363
ND+ IP LSW D + + + + +Y Y PV++ + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261
Query: 364 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
+SGTTG KA+ + + W + I+ + V +++GWV L+ S G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321
Query: 423 ATLALYQG-----SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
T +++G +E ++ VT T+P ++ T+ + T IR
Sbjct: 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR--- 374
Query: 478 STGETSNVDDDLWLSSKAWYNAI---IES---------CGGTELSSAYIQGSLLQPQAFG 525
S + SN+ ++W + +I IE+ G TE+ Y+ +G
Sbjct: 375 SKYDLSNL-KEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYC-------YG 426
Query: 526 AFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+ G+ IL E G ++ +GEV F L + S ++E +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKF 483
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
+ + G GD+ + GY + R+DD + + G K IE SI
Sbjct: 484 KQLFSKFPGY--YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE-------TSI 534
Query: 639 L------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLF 689
L E +I + V + +VLK+ ++Q +KLK + I + L
Sbjct: 535 LKHPLVLECCSIGIYDPDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLA 593
Query: 690 K-----VVPEFPRTASNKLLRRVL 708
+V + P+T + K+ R+++
Sbjct: 594 VLRKIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 133/613 (21%), Positives = 223/613 (36%), Gaps = 130/613 (21%)
Query: 156 DRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKEL 215
R S G W ++ + + C+ D T R A TY+EL
Sbjct: 10 PRRAASIAAGHWHDRTINDDLDACV-----ASCPDKTAVTAVRLGT---GAPRRFTYREL 61
Query: 216 REQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274
V VA L + +GD ++ +P ++YLA G V+ + F RE++
Sbjct: 62 AALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF 121
Query: 275 RLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWK 333
L+ +++K + + F R F + P LPA+ + V + + S++
Sbjct: 122 MLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFE 171
Query: 334 DFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAE 387
L + + P+ + + D V ++++SGTTGEPK + T +++I AE
Sbjct: 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231
Query: 388 GWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKF 440
+ L DV + + G PV+L GAT A+ Q +
Sbjct: 232 ---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAEL 281
Query: 441 VQDAGVT-VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499
++ GVT + + P L R G + +R+F
Sbjct: 282 IRTEGVTFTMASTPFLTDLTRAVK-ESGRPVSSLRTFL---------------------- 318
Query: 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA------GLVIL-------------D 540
C G A I G+L++ +A A ++A G V L D
Sbjct: 319 ----CAG-----APIPGALVE-RARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTD 368
Query: 541 ECGVPY-------PDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
C +P D P G++G F YL LN + +F
Sbjct: 369 GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGWFDT--- 423
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ + GYI + GR+ D + GG VEIE + + + AI
Sbjct: 424 ---------GDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA--IAQVAI 472
Query: 645 SVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLF-KVVPEFPRTASNK 702
P E FVV + G + + ++ + ++ + + P V PRT S K
Sbjct: 473 VAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGK 532
Query: 703 LLRRVLRDQIKHE 715
+ + LR+ ++ E
Sbjct: 533 IQKFRLREMLRGE 545
|
Length = 547 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 49/205 (23%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTV 244
R+ + A+V+ + TY EL V VA AL D KGD +A +
Sbjct: 21 ARRYPDKTALVFGDRS--------WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+++LA AG V V + E+A L S A+ + P L
Sbjct: 73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAAL 126
Query: 305 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P+ ++L + + RE W DF V D + IL++
Sbjct: 127 ALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEPDVELADDDLAQILYT 179
Query: 365 SGTTGEPK-------AIPWTQLSSI 382
SGT PK A+ +S I
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCI 204
|
Length = 523 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 4e-09
Identities = 117/546 (21%), Positives = 192/546 (35%), Gaps = 118/546 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 265
+TY EL EQ +A L + GD +A+ + R + LA+ AG V I
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131
Query: 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325
F+ ++A K + D ++ +L A P L A G +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180
Query: 326 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 380
+ + + P+P + ++ +SGTTG PK P + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231
Query: 381 SIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
+ A + + + G+ P GW + + G+T+ L R
Sbjct: 232 PLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL----GSTVV------LRRR 281
Query: 437 FG-----KFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDL 489
F + + T L VP ++ + L D + ++ +G S + +L
Sbjct: 282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSG--SALSPEL 339
Query: 490 WLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDE 541
+ + ++ + G TE++ A I P+ + A T G + ILDE
Sbjct: 340 ATRALEAFGPVLYNLYGSTEVAFATIAT----PE---DLAEAPGTVGRPPKGVTVKILDE 392
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR-GMPMYKGMCLRRHGDIIKR- 599
G P G VG ++ G P +G R II
Sbjct: 393 NGNEVP-----RGVVG------------------RIFVGNGFPF-EGYTDGRDKQIIDGL 428
Query: 600 ----TVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650
VG G + V GR DD + GG E+E + + ++E A I V
Sbjct: 429 LSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPD-VVEAAVIGVDDEE 487
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLL 704
G + L FVV G D +K ++ L +KV + E PR + K+L
Sbjct: 488 FG-QRLRAFVVKAPGAALDEDAIK----DYVRDNLAR-YKVPRDVVFLDELPRNPTGKVL 541
Query: 705 RRVLRD 710
+R LR+
Sbjct: 542 KRELRE 547
|
Length = 549 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 5e-09
Identities = 134/709 (18%), Positives = 225/709 (31%), Gaps = 99/709 (13%)
Query: 26 FDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLY 85
F +L QV + G A + + L+P H ++ +YN L
Sbjct: 2903 FRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLS-HSPLFQVMYNHQSGERAAAQL- 2960
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR----LFQKFTVEHPEAYWEIALK 141
P L G A + + + S LF TVE +W+ L+
Sbjct: 2961 --PGLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLR 3018
Query: 142 EISVVFREAPKCI-----LDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKED------ 190
+ + + LD ++ + W + E + HR E+
Sbjct: 3019 GMV---ENPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGV----HRLFEEQVERTP 3071
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ VA+ + E R ++Y EL + +A+ L D + + + ++ V+
Sbjct: 3072 DAVALAFGEQR--------LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVG 3123
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LAI+ AG V + + +A L S A+ + +Q + + PL V
Sbjct: 3124 LLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLPLAQGV------ 3172
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
Q L + P + + ++++SG+TG
Sbjct: 3173 ------------------QVLDLDRGDENYAEANPAIRTMP-----ENLAYVIYTSGSTG 3209
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+PK + + L VGD T + + LF ++GA + L
Sbjct: 3210 KPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-A 3268
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL-DWTKIRSFASTGETSNVD-D 487
G R V+ + + + + E T ++ GE D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQ 3328
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLVILDECGVPY 546
+ YN G TE + ++ ILD P
Sbjct: 3329 QQVFAGLPLYNLY----GPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPV 3384
Query: 547 PDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
P VG +G LYLG A F P G L R GD+ +
Sbjct: 3385 P-----VGALG--ELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G I GR D + + G + EIE + E ++V LV +VV
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIELGEIE-ARLLEHPWVREAVVLAVD-----GRQLVAYVVP 3491
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNP---LFKVVPEFPRTASNKLLRRVL 708
+ + LK ++ + P LF + P T + KL R+ L
Sbjct: 3492 EDEAGDLREALKAHLKASLPEYMVPAHLLF--LERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 132/561 (23%), Positives = 199/561 (35%), Gaps = 97/561 (17%)
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D D TY EL V AN L ++ GD +A +P AG
Sbjct: 51 DPLDRPET--WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG- 107
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVL 314
+ I +IA LR + AK + T L ++ KV L A P L+ +V
Sbjct: 108 IANPINPLLEPEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 315 PAIGNDVGIPLREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+ + P R + DF + + P +S D V + G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 367 TTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422
TTG PK T + + A W + L GD L V V + G
Sbjct: 224 TTGMPKLAQHTHGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280
Query: 423 ATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
A + L Y+G + +F K V+ + L VP++ A +G D + +R +A
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLR-YA 338
Query: 478 STGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA----FSTA 530
G V ++ I+E G TE + + G+
Sbjct: 339 LCGAAPLPVEVFRRFEAATGV---RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 531 TMTAGLVILDECGVPYPDDQPCVGEVGL--------FPLYLGASDRLLNADHEEVYFRGM 582
+ VILD+ G Y D V EVG+ F Y L A H
Sbjct: 396 RVRV--VILDDAG-RYLRDCA-VDEVGVLCIAGPNVFSGY-------LEAAHN------- 437
Query: 583 PMYKGMCLRRH----GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
KG+ L GD+ + GY + GRA D + GG IE E++
Sbjct: 438 ---KGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIE-------EAL 487
Query: 639 LETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLK-----MIFSKAIQSKLNPL 688
L A++++ A G P E+ V +V LK G ++ +L I +A K
Sbjct: 488 LRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPK---H 544
Query: 689 FKVVPEFPRTASNKLLRRVLR 709
+++ P+TA K+ + LR
Sbjct: 545 VRILDALPKTAVGKIFKPALR 565
|
Length = 632 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 4e-08
Identities = 129/594 (21%), Positives = 212/594 (35%), Gaps = 92/594 (15%)
Query: 151 PKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLM 210
+ R SK G W ++ + + + D +R+ AV
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAV-----ANCPDKPALTAYRDG---HGAVRRF 54
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL +V +A L + +GD ++ +P +YLA G V+ + F
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI----- 323
RE++ L + +K +F + RG + ++ P L+ +V+ D
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---L 379
P R+ L+ PRP SP D V ++++SGTTGEPK + T
Sbjct: 174 TPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439
S+I AE ++L GDV + P+ + F+ G + L
Sbjct: 222 SNIHPYAE---RLELGGGDVILMAS-------PMAHQTGFMYGLMMPL------------ 259
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR-SFASTGETSNVDDDLWLSSKAWYN 498
+L L W E + T + + AST +++ + S +
Sbjct: 260 --------ILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPS 311
Query: 499 AIIESCGGTELSSAYIQGS-----LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
C G + ++ + L A+G +T D +P
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371
Query: 554 G-EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH------------GDIIKRT 600
G EV + +L + + RG + G R H GD+ +
Sbjct: 372 GVEVKVID---ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQD 428
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
GYI + GR+ D + GG VEIE + Q + AI P E V
Sbjct: 429 AEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ--HPAVAQVAIVAYPDERLGERACAVV 486
Query: 661 VLKKGFTSQPDKLKMI-FSKAIQSKLNPL---FKVVPEFPRTASNKLLRRVLRD 710
V K G T D M+ F KA + L + +VV P T + K+ + LR+
Sbjct: 487 VPKPGCTL--DFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 93/406 (22%), Positives = 137/406 (33%), Gaps = 109/406 (26%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 402
D V S G+TG PK IP T S+R + E CW
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227
Query: 403 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
P + + F G + L F ++ VTV VP V
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 514
LW+ + + A + S GG + S+A
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315
Query: 515 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 556
+ G LQ Q FG M GLV I G P PDD+ V +
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368
Query: 557 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
P+ G + LL +H F Y GD+++ T GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
I+V GRA D +N GG K ++ EIE + A ++ + A +S+ G E F+V++
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIENLL-LAHPAVHDAALVSMPDELLG-EKSCAFIVVRD 480
Query: 665 GFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNKLLRRVLR 709
+ + + + KL + V P TA K+ ++ LR
Sbjct: 481 PALKAAQLRRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 128/572 (22%), Positives = 205/572 (35%), Gaps = 131/572 (22%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY EL +QV A L + GD +AI +P + ++ + A++ G VVV +
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 320
A E+ A+ D + P ++ PL+ IV +P +
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 321 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 360
+ +P+ R + W+ + + HPRP A+
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDV------AL-- 223
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG----WVMGPVILF 416
IL++SGTTG+PK T + A+G A W LG V+ + +F
Sbjct: 224 ILYTSGTTGKPKGAQLTHRNLFANAAQGKA-----------WVPGLGDGPERVLAALPMF 272
Query: 417 SSF---LNGATLALYQGSPLERSFGKF----VQDA----GVTVLGTVPSLVKAWRNTNCL 465
++ L TLA+ G L + DA T L VP L +
Sbjct: 273 HAYGLTLCL-TLAVSIGGELVL-LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE 330
Query: 466 EGLDWTKIR---SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522
G+D + +R S A S V+ LW ++E G TE S P
Sbjct: 331 RGVDLSGVRNAFSGAMALPVSTVE--LWEKLTGGL--LVEGYGLTETS----------PI 376
Query: 523 AFGAFSTATMTAGLVILDECGVPYPD-------------DQPCVGEVG--------LFPL 561
G + G V GVP+PD P GE G +F
Sbjct: 377 IVGNPMSDDRRPGYV-----GVPFPDTEVRIVDPEDPDETMP-DGEEGELLVRGPQVFKG 430
Query: 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
Y + + + + R GD++ G+I + R + + GG
Sbjct: 431 YWNRPEETAKSFLDGWF-------------RTGDVVVMEEDGFIRIVDRIKELIITGGFN 477
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 681
E+E V + + + A + + P G E +V VVL+ G P+ L+ + +
Sbjct: 478 VYPAEVEEVLREHP-GVEDAAVVGL-PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHL 535
Query: 682 QS-KLNPLFKVVPEFPRTASNKLLRRVLRDQI 712
K+ F V E PR K+ RR +R+++
Sbjct: 536 TRYKVPRRFYHVDELPRDQLGKVRRREVREEL 567
|
Length = 573 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 127/570 (22%), Positives = 218/570 (38%), Gaps = 108/570 (18%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+E + +A++W +D +E + T+ +L++ AN + KGD + +T++
Sbjct: 28 DEEPDKLALIWCDDDGEEK---IFTFGDLKDYSNKAANFFKALGIGKGDTVM----LTLK 80
Query: 246 AVIIYLAIILA----GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
+ +LA G + + A++I R+ + K I + G P +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH- 134
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDA 357
+ AAP + VG P+ E W DF ++ RP D
Sbjct: 135 -IDEAAPECGSPTLLV--LVGDPVPE---GWIDFDKEIENASPDFERPT--GNDATCNDD 186
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGW---VMGP 412
++ + F+SGTTG PK + + TA+ W ++K G ++ + GW V G
Sbjct: 187 ILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQ--NVKEGGLHLTVADTGWGKAVWGK 244
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDA--------GVTVLGTVPS----LVKAWR 460
L+ ++ GA + +Y + KF GVT P+ L+K
Sbjct: 245 --LYGQWIAGAAVFVY-------DYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKE-- 293
Query: 461 NTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
L D + +R + GE N + + + ++E G TE + +
Sbjct: 294 ---DLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI--KLMEGFGQTETTLTIATFPWM 348
Query: 520 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGE-------------VGLFPLYLGA 565
+P+ G+ + + I+D PD + C VGE +GLF Y
Sbjct: 349 EPKP-GSMGKPSPGYDIDIID------PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRD 401
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+R H+ Y GD GY+ GRADD + G +
Sbjct: 402 PERTAEVWHDGYYHT-------------GDTAWMDEDGYLWFVGRADDLIKSSGYRIGPF 448
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAI 681
E+E Q ++LE A V P G +V+ +VL KG+ + +L+ K
Sbjct: 449 EVESALIQ-HPAVLECAVTGVPDPIRG--QVVKATIVLTKGYEPSEELKKELQDHVKKVT 505
Query: 682 QSKLNP-LFKVVPEFPRTASNKLLRRVLRD 710
P + + V E P+T S K+ R +R+
Sbjct: 506 APYKYPRIIEFVDELPKTISGKIRRVEIRE 535
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 114/513 (22%), Positives = 180/513 (35%), Gaps = 77/513 (15%)
Query: 233 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M V+ LA A VVV + + E R + + A+ + D
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126
Query: 293 GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 351
R P PL V G G D P P +P
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 406
P DA+ I+F+ GTTG PK +PWT SS+R G+ L D V P
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228
Query: 407 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + GA L +G +F ++ G T VP++ + E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288
Query: 467 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
IRS ++ T ET+ + + ++ + G TE A Q +
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339
Query: 520 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 575
Q + G ++ GLV + + D P G VG
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381
Query: 576 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
EV+ RG + +G R GD+ + G + ++GR + +N GG K
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
S +E V +++E A V G V + V + + + ++ +
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAA 500
Query: 683 SKLNPLFKVVPEFPRTASNKLLRRVLRDQIKHE 715
++ F+ P TA L RR + +Q H
Sbjct: 501 FEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533
|
Length = 534 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 609 GRADDTMNLGGIKTSSVEIERVCDQADESILE---TAAISVSPAGGGPEVLVIFVVLKKG 665
GR D + + G+ + EIE +Q +E TAA +V AG G + L +F V +
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVP--GVEPSFTAACAVRDAGSGTDELAVFFVPRYD 505
Query: 666 FTSQPDKLKMIFSKAIQSK------LNPLFKVVP----EFPRTASNKLLRRVLRDQ 711
+ L +AI++ + P + V+P +FP+T+ K+ R LR +
Sbjct: 506 LDDRLAAL----LRAIRTHVARKIGIAPAY-VIPLAKEDFPKTSLGKIQRAQLRKR 556
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 106/534 (19%), Positives = 193/534 (36%), Gaps = 95/534 (17%)
Query: 209 LMTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
MTYK+L E V VA L + KG+ IAI ++ +++ AI + V +
Sbjct: 27 EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIR 86
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
E+ +L+ S +F + + + + + V I
Sbjct: 87 LTENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI--------- 127
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
L ++ N+ A I ++SGTTG+PK TQ +
Sbjct: 128 -----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDA 444
IDL + D L + +G + LF+ + G + + + ++ ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKH 237
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
VTV+ VP++ +A N + E + +R F + G
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPE------------------- 278
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG---LFPL 561
EL +I L Q FG T T ++ +E D + VG +G LF
Sbjct: 279 ---ELMREFIDRGFLFGQGFGM--TETSPTVFMLSEE------DARRKVGSIGKPVLFCD 327
Query: 562 YLGASDRLLNADHE--------EVYFRGMPMYKGMCLRRH-------------GDIIKRT 600
Y L++ + E+ RG + K R GD+ +
Sbjct: 328 Y-----ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G++ + GR + + GG +E+E+V ++ + E A + G E+ + F+
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLS-DVYEVAVVGRQHVKWG-EIPIAFI 440
Query: 661 VLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLRDQIK 713
V K + D ++ + K+ + E P+ A+ K+ + L +Q+K
Sbjct: 441 VKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494
|
Length = 496 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ R GY GR D M + G + IER+ + + E A +V G
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPD-ATEVAVYAVPDPVVGD 444
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEFPRTASNKLLRRVL 708
+V+ +VL G PD + Q L P +V E PRTA+ K+L+R L
Sbjct: 445 QVMAA-LVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501
Query: 709 RDQ 711
+
Sbjct: 502 SAE 504
|
Length = 529 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E A L GD +A+ +P + I++ I+ G V V ++ F
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 322
E++ L + A+ + D + P+ +V L+ + VLPA
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170
Query: 323 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 375
+PL R D L ++ P P +DA+ + ++ GTTG PK
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228
Query: 376 WTQ 378
TQ
Sbjct: 229 HTQ 231
|
Length = 567 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ GYI V R D + GG +S E+E ++ E A I + P
Sbjct: 400 GDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT-HPAVAEVAVIGL------P 452
Query: 654 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNK 702
E + VV K G T D+L + +A +L FKV V E PR S K
Sbjct: 453 DPKWIEAVTAVVVPKAGATVTEDEL-IAHCRA---RLAG-FKVPKRVIFVDELPRNPSGK 507
Query: 703 LLRRVLRDQIKH 714
+L+R LR++
Sbjct: 508 ILKRELRERYAG 519
|
Length = 523 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 7e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ EL E+V +A L + GD +AI VI LAI+ AG V V I + +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+A L S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 592 RHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 649
+ GD+ GY + GR DD + GG K S++EIE + E A I V P
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL-EHPGVAEVAVIGVPDPD 375
Query: 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-----FKVVPEFPRTASNKLL 704
G E +V VV + G +L+ + KL P VV E PR A K+
Sbjct: 376 WG--EAVVAVVVPEAGAALTLAELR----AWAREKLAPYKIPKRVIVVDELPRNAMGKVQ 429
Query: 705 R 705
+
Sbjct: 430 K 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+V+ +A+ L + ++G+ +AI + + V LAG V V I
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 323
A ++A L + + T L L + ++ P A
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
SW L+ D P PV + A IL++SG+TG PK + + ++
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189
Query: 384 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
A+ A ++ + D L + G L ++F GAT+ L+ L R K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 480
G+T L VP L W L LDW + +R ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 109/516 (21%), Positives = 176/516 (34%), Gaps = 108/516 (20%)
Query: 185 HRRKED------NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IA 237
H+ ED VA+V+ E +TY EL + +A+ L + + +
Sbjct: 1577 HQLIEDQAAATPEAVALVFGEQE--------LTYGELNRRANRLAHRLIALGVGPEVLVG 1628
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I + ++ V+ LAI+ AG V + + +A + S + + TQ + +
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---RL 1685
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VD 356
PL L+++VL +Q+ W ++ + N P N
Sbjct: 1686 PL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLAPQ 1718
Query: 357 AVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405
+ ++++SG+TG PK + TQ + A+ DV W
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-- 1776
Query: 406 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW--- 459
LF +NGA L + R + +Q VT L VPS+++
Sbjct: 1777 ---------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE--LSSAYI 514
+ + +R GE V+ WL + G TE + +
Sbjct: 1827 DEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTETAVDVTHW 1879
Query: 515 QGSLLQPQAFGAFSTATMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA 572
+ + A ILD P P GE LYLG L
Sbjct: 1880 TCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVP--IGVAGE-----LYLGG-VGLARG 1931
Query: 573 DHEEV-----YFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
F P G L R GD+ + G I GR D + + G + E
Sbjct: 1932 YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991
Query: 627 IE-RVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
IE R+ +Q + E I+ A G + LV +VV
Sbjct: 1992 IEARLREQGG--VREAVVIAQDGANG--KQLVAYVV 2023
|
Length = 3956 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ VA L + +GD + + +P V+ +L G V + +
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S AK I TQ K+ G A + + I + L
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 329 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
+L+ D L V+ P D VV + +SSGTTG PK + T + A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209
Query: 387 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+ +D DV Y + +L GA + +
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257
Query: 430 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474
G+ LE +Q VT+ VP +V A + +E D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301
|
Length = 537 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 86/382 (22%), Positives = 149/382 (39%), Gaps = 66/382 (17%)
Query: 356 DAVVNILFSSGTTGEPK--AIP---------WTQLSSIRCTAEGWAHI--------DLKV 396
D + ++++SG+TG PK AI W +AE A + DL V
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAV---FSAEELAGVLAATSICFDLSV 161
Query: 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV 456
+++ P + G G V+L + L A L + E VT++ TVPS
Sbjct: 162 FEIFV-PLSTG---GRVVLADNAL--ALPDLP--AKAE-----------VTLINTVPSAA 202
Query: 457 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 516
+ + L + +R+ GE + L + + G +E + Y
Sbjct: 203 RELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE-DTTYSTY 257
Query: 517 SLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLN 571
+ ++P A S AG +LD P P P +G G+ YLG + L
Sbjct: 258 AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPE--LT 315
Query: 572 AD----HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
A+ + G +Y R GD+++R G + GR DD + + G + EI
Sbjct: 316 AERFLPNPFAGSPGERLY------RTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEI 369
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687
E ++ + E +++ A G + LV ++V G + L+ + + + + P
Sbjct: 370 EA-ALRSIPGVAEAVVVAIGDAAGDRQ-LVAYIVADPGAAIDIEDLRARLATRLPAYMVP 427
Query: 688 -LFKVVPEFPRTASNKLLRRVL 708
F + P T + K+ R+ L
Sbjct: 428 SRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R GD+ G++ + R D + GG +S E+ERV + E + E A I V
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPE-VAEAAVIGVHDDRW 434
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNKLLRRVLRD 710
G + + VVL G T + L + + S K+ KV E PR S K+L+RVLRD
Sbjct: 435 GERITAV-VVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRD 493
Query: 711 QI 712
++
Sbjct: 494 EL 495
|
Length = 497 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E +A L + +KG +AI MP ++ + A++ AGYVVV++ +
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323
RE+ +L+ S A+ I ++F +VL +K +V+ ++G+ +G
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157
|
Length = 557 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G++ + RADDT +GG+ E+ER+ + + ++ E A ++V + G + V
Sbjct: 379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDE-AVAEAAVVAVRESTGASTLQAFLVAT 437
Query: 663 KKGFTSQP---DKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLRDQ 711
D + + ++ K+ F VV PRT + KL+R LR Q
Sbjct: 438 SGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQ 489
|
Length = 705 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 61/288 (21%), Positives = 97/288 (33%), Gaps = 83/288 (28%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ A++ +TY EL + +A AL + GD +A+ MP ++
Sbjct: 2 DATAVIDGAGT--------LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVA 53
Query: 250 YLAIILAGYVVVSI-ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 308
L I+LAG V I D A R A L + A+ + T
Sbjct: 54 VLGILLAGAAYVPIDPDQPAER-RAAILARAGARAVLTDP------------------GL 94
Query: 309 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368
+ P + D + P D + ++F+SG+T
Sbjct: 95 AQPEEAPDLLVVA-------DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGST 138
Query: 369 GEPKAIPWTQ---LSSIRCTAEGWA-------------HIDLKVGDVYCWPTNLGWVMGP 412
GEPK + T +++I + H DL V D++
Sbjct: 139 GEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFG----------- 187
Query: 413 VILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLV 456
S+ GA L L R + + VQ GVTV +VP+L+
Sbjct: 188 --ALSA---GAALVL--PDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+EL E+ +A L KGD + + M + + VI Y AI+ A VVV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 269 AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 317
E+A + S A+ I + L KV G L+ IV LPA
Sbjct: 97 EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146
Query: 318 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
PL+ ++WK+ L++ P P+ P D + + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200
Query: 367 TTGEPKAIPWTQLSSIRCTAEGWAH 391
TTG PK T ++ A G
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224
|
Length = 546 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 86/383 (22%), Positives = 132/383 (34%), Gaps = 79/383 (20%)
Query: 366 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421
GTTG PK + + + A W L GDV L V G ++ +
Sbjct: 12 GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 422 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
GAT+ L ++ + +F K V+ VT+L VP+++ A L D + +R +
Sbjct: 69 GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126
Query: 477 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 533
A TG V + ++E G TE + S
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168
Query: 534 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 570
G G+ P + C GEVG +FP YL +
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225
Query: 571 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
NA E+ + GD+ + GY+ + GRA D + GG IE
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIE 273
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK--LN 686
++ AA+ A G E+ V +V LK G T +L I + +
Sbjct: 274 EAL-LRHPAVALAAAVGRPDAYAG-ELPVAYVQLKPGATVTEGELLAFVKARIPERAAVP 331
Query: 687 PLFKVVPEFPRTASNKLLRRVLR 709
++ P TA K+ + LR
Sbjct: 332 KAIYIIDALPLTAVGKIFKPRLR 354
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 92/384 (23%), Positives = 133/384 (34%), Gaps = 51/384 (13%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV-Y-CWPT--NLGWVM 410
VD I ++SGTTG PKA + +R A LK DV Y C P + +
Sbjct: 81 VDPAFYI-YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTV 139
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFG--KF---VQDAGVTVLGTVPSLVKAWRNTNCL 465
G S+ GA+LAL R F +F V+ G T V L + N
Sbjct: 140 GWS---SALAAGASLAL------RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEK 190
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQA 523
+R G D+W K + I+E G TE + +I P A
Sbjct: 191 PDDRDHPLRKIIGNGLR----PDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNK-PGA 245
Query: 524 FGAFSTATMTAGLVI---LDECGVPYPDDQPCV----GEVGLFPLYLGASDRLL------ 570
G A V+ ++ + C+ GEVGL LG
Sbjct: 246 VGR---LPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGL---LLGEITDRNPFDGYT 299
Query: 571 -NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
+ E+ R + KG GD+++R GY R DT G S+ E+E
Sbjct: 300 DDEATEKKILRDV-FKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEE 358
Query: 630 VCDQADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
V + + E V P G + + L G P + + + PL
Sbjct: 359 VLAKH-PGVEEANVYGVEVPGTEGRAGMAA-LTLAPGAAFDPQAFAAHLDEQLPAYARPL 416
Query: 689 F-KVVPEFPRTASNKLLRRVLRDQ 711
F +V T + K + LR +
Sbjct: 417 FLRVQAAMETTGTFKYQKTDLRKE 440
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 8e-06
Identities = 115/525 (21%), Positives = 189/525 (36%), Gaps = 81/525 (15%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL + +A+ L +AI + V+ LA++ AG V + ++
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S A + TQ +L PL A V +PL ++
Sbjct: 2089 AERLAYMLEDSGAALLLTQ-------------RHLLERLPLPAGV-------ARLPL-DR 2127
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
D W D+ + P + + ++++SG+TG PK A+ L + C A
Sbjct: 2128 DAEWADYPDT---APAVQLAG------ENLAYVIYTSGSTGLPKGVAVSHGALVA-HCQA 2177
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA 444
G + +L D + + F LNGA + + E+ + + ++
Sbjct: 2178 AGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-MERH 2235
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD-DLW---LSSKAWYNAI 500
GVT+L P ++ +G +R + GE L L +N
Sbjct: 2236 GVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294
Query: 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCV 553
G TE A + L + + A + G ILD
Sbjct: 2295 ----GPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA--PGMA 2345
Query: 554 GEVGLFPLYLGAS-------DR-LLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGY 604
GE LYLG +R L A+ F P G L R GD+ + G
Sbjct: 2346 GE-----LYLGGEGLARGYLNRPGLTAER----FVPDPFSASGERLYRTGDLARYRADGV 2396
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
+ GR D + + G + EIE QA ++ E ++ A G + LV +VV
Sbjct: 2397 VEYLGRIDHQVKIRGFRIELGEIE-ARLQAHPAVREAVVVAQDGASG--KQLVAYVVPDD 2453
Query: 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVVPE-FPRTASNKLLRRVL 708
+L+ + + + + P VV E P + KL R+ L
Sbjct: 2454 AAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498
|
Length = 5163 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD++ GYI V GR D +N GG K ++ EIE + +++ A +S+ G
Sbjct: 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLL-LRHPAVIHAALVSMEDELMG- 471
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAI-QSKLNPLFKVVPEFPRTASNKLLRRVLRDQI 712
E F+V+K+ + + + + I + KL + V P TA K+ ++ LR +
Sbjct: 472 EKSCAFLVVKEPLKA-VQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWL 530
Query: 713 KHELS 717
S
Sbjct: 531 ASRAS 535
|
Length = 536 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 123/543 (22%), Positives = 193/543 (35%), Gaps = 109/543 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSK-GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+E+REQV+ +AN L K GD++A+ +P +V + AI+ AG + + +
Sbjct: 484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 543
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ L ++ + T L P ++ V L A PL+
Sbjct: 544 DDRLKMMLEDARPSLLITTADQL------PRFADVPDLTSLCYNAPLAPQG--AAPLQL- 594
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK-------AIP----WT 377
+P+ Y I+F+SG+TG PK AI W
Sbjct: 595 --------------SQPH--HTAY--------IIFTSGSTGRPKGVMVGQTAIVNRLLWM 630
Query: 378 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY----QGSPL 433
Q H L DV T + + F F+ GA L + PL
Sbjct: 631 Q-----------NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPL 679
Query: 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI---RSFASTGETSNVD-DDL 489
+F + GVT VPS++ A+ + EG + + F S GE D
Sbjct: 680 A--MQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCS-GEALPADLCRE 736
Query: 490 WLSSKAWYNAIIESC-GGTELS---SAYIQGSLLQPQAFGAFSTATM-------TAGLVI 538
W + A + + G TE + S Y + A +++ GL I
Sbjct: 737 W---QQLTGAPLHNLYGPTEAAVDVSWYPAF----GEELAAVRGSSVPIGYPVWNTGLRI 789
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594
LD P P G G LYL A L D F P G + R G
Sbjct: 790 LDARMRPVP-----PGVAG--DLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG 842
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC----DQADESILETAAISVSPAG 650
D+ + G + GR+DD + + G + EI+R D + G
Sbjct: 843 DVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATG 902
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEFPRTASNKLLR 705
G LV ++V + G L+ ++ +L P + + + P +A+ KL R
Sbjct: 903 GDARQLVGYLVSQSGLPLDTSALQ----AQLRERLPPHMVPVVLLQLDQLPLSANGKLDR 958
Query: 706 RVL 708
+ L
Sbjct: 959 KAL 961
|
Length = 1296 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ EL+E+ AN L D +GD +A+ +P + L I G V +
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 270 REIATRLRVSKAKGIFTQD 288
++I RL + A+ I T
Sbjct: 62 KDIRYRLERAGARAIVTSA 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
GYI ++ R+ D + GG SS+E+E V + ++LE A ++ G E FVVL
Sbjct: 415 GYIEIKDRSKDIIISGGENISSIEVEGVLYKHP-AVLEAAVVARPDEKWG-ETPCAFVVL 472
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVVP-----EFPRTASNKLLRRVLRD 710
K G + ++L + + + KL FKV E P+TA+ K+ + VLR+
Sbjct: 473 KPGASVTEEEL-IEYCRE---KL-AHFKVPKTVEFVELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 119/516 (23%), Positives = 197/516 (38%), Gaps = 69/516 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+ Y EL + +A+AL + + M ++ V+ LAI+ AG V + +
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S + + +Q + GRK PL AA ++ + L
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHL---GRKLPL------AAGVQVLDLDRPA---------- 637
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
+W + S + N + Y ++++SG+TG+PK LS+ C
Sbjct: 638 --AWLEGYSEENPGTELNPENLAY--------VIYTSGSTGKPKGAGNRHRALSNRLC-- 685
Query: 387 EGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ-- 442
W L VGD T + + F ++GA L + R K V+
Sbjct: 686 --WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVV-AAPGDHRDPAKLVELI 742
Query: 443 -DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
GV L VPS+++A+ + T +R +GE D + +K +
Sbjct: 743 NREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY 800
Query: 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEV--- 556
G TE + + ++ + + A L ILD P P +GE+
Sbjct: 801 NLYGPTEAAIDVTHWTCVE-EGGDSVPIGRPIANLACYILDANLEPVP--VGVLGELYLA 857
Query: 557 --GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614
GL Y G L A+ F P G + R GD+ + G I GR D
Sbjct: 858 GRGLARGYHGRPG--LTAER----FVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQ 911
Query: 615 MNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
+ L G++ EIE R+ + + E A ++V + LV +VVL+ + L
Sbjct: 912 VKLRGLRIELGEIEARLLEH--PWVREAAVLAV-----DGKQLVGYVVLESEGGDWREAL 964
Query: 674 KMIFSKAIQSKLNPLFKVVPE-FPRTASNKLLRRVL 708
K + ++ + P + E P T + KL R+ L
Sbjct: 965 KAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 50/173 (28%), Positives = 69/173 (39%), Gaps = 31/173 (17%)
Query: 563 LGASDRLLNADH---EEVYFRGMPMYKG-----------MCLRRHG-----DIIKRTVGG 603
A LLNAD E V G ++G M RHG D+ R G
Sbjct: 338 FDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM---RHGMYWSGDLAYRDADG 394
Query: 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663
+I GR D M + G S+ IER+ +I A +V G +V+ +VL+
Sbjct: 395 WIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGDQVMAA-LVLR 452
Query: 664 KGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEFPRTASNKLLRRVLRDQ 711
G T PD A Q L ++ + P TA+NK+L+R L Q
Sbjct: 453 DGATFDPDAFAAFL--AAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQ 503
|
Length = 540 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 81/399 (20%), Positives = 122/399 (30%), Gaps = 98/399 (24%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD---VYCWPTNLGWVMGP 412
D V I ++SGTTG PK T ++ TA A D + P L V G
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTH-RTVLATAAASAAWSGLTPDSVLLAFLP--LFHVAG- 139
Query: 413 VILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
+Y G+ L + + ++ VT + ++V
Sbjct: 140 ------MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRF 193
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ-----GSLLQ 520
D + ++ GG L A + LL
Sbjct: 194 ADYDLSSLKVVG--------------------------GGGAALPPAVAERLKALTGLLY 227
Query: 521 PQAFGAFSTA---TMTAGL-VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE- 575
+ +G T G+P V + + L E
Sbjct: 228 EEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDP--------ETGEELPPGEEG 279
Query: 576 EVYFRGMPMYKGM---------CLR--------RHGDIIKRTVGGYIIVQGRADDTMNLG 618
E+ RG ++KG R GD+ GY R +N+
Sbjct: 280 EIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 678
G K E+E + Q ++LE I G EV+ FVVLK PD +
Sbjct: 340 GYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRRG-EVVKAFVVLK------PDYRGKVTE 391
Query: 679 KAIQS---------KLNPLFKVVPEFPRTASNKLLRRVL 708
+ I K + + V E P+TAS K+L R+L
Sbjct: 392 EDIIEWCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFV 660
G +++ GRA D + + G +IERV +Q + L AA V E +VIFV
Sbjct: 381 NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFV 440
Query: 661 VLKK---GFTSQPDKLKMIFSKAIQSKLNPLFKVVP--EFPRTASNKLLRRVLRDQIK 713
++ FT K+K +K + ++ V+P P+T S K+ R L Q
Sbjct: 441 EYRQSLDDFTPLALKIKRHVNKKMGLNID---HVIPVRSIPKTTSGKIQRYKLAQQFL 495
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T+++L + V +A L + GD + I P ++ A G ++V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 311
A E+ L S + + D + ++ + P L+
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
+V A G + + + +S R D +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216
Query: 372 KA 373
K
Sbjct: 217 KG 218
|
Length = 558 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 536 LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNAD---HEEVYFRGMPMYKGMC 589
+ +LDE P P P +G G+ YLG + L A+ + G +Y
Sbjct: 269 VYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPE--LTAERFVPDPFDDPGGRLY---- 322
Query: 590 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649
R GD+++ G + GRADD + + G + EIE + A + V
Sbjct: 323 --RTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VADAVVVVREE 378
Query: 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP------LFKVVPEFPRTASNKL 703
G G + LV +VV K G + L+ A+++ L P F + E P T + K+
Sbjct: 379 GPGDQRLVAYVVPKAGAAPDAEALR----AALRATL-PAYMVPAAFVQLDELPLTPNGKV 433
Query: 704 LRRVL 708
R+ L
Sbjct: 434 DRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G++ V R D + GG EIE V + + E + V G +V V FVV
Sbjct: 374 GFLYVLDRRSDLIISGGENIYPAEIEEVL-LSHPGVAEAGVVGVPDDKWG-QVPVAFVVK 431
Query: 663 KKGFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNKLLRRVLRDQIK 713
T ++L+ + + K+ F V E PR AS KLLR L+ ++
Sbjct: 432 SGEVTE--EELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVE 481
|
Length = 483 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 40/190 (21%)
Query: 538 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC-------- 589
++DE PD +P GE+ LL AD + G Y GM
Sbjct: 356 VVDEHDQELPDGEP--GEL------------LLRADEPFAFATG---YFGMPEKTVEAWR 398
Query: 590 -LRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
L H GD + R G+ R D + G SS E+E+V + ++ A V
Sbjct: 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL-LSHPAVAAAAVFPVP 457
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASN 701
G EV+ VVL+ G +P L + + +L F V V P+T +
Sbjct: 458 SELGEDEVMAA-VVLRDGTALEPVAL----VRHCEPRL-AYFAVPRYVEFVAALPKTENG 511
Query: 702 KLLRRVLRDQ 711
K+ + VLR+Q
Sbjct: 512 KVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G + V GR D+ + GG +E+E+ + + E A I V G + L FVVL
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYG-QRLAAFVVL 487
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710
K G ++ P+ LK + + P V+ E PR A+ K+LRR L+
Sbjct: 488 KPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536
|
Length = 537 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T++EL ++V +A AL GD + I M V LA + G + V +
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + A + T+ + P+ + V PL + V+ A G +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
L ++D L+ +PV P D+ I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 30/132 (22%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAG-- 650
GD GY QGR DD IKTS ERV ES L E A V+ AG
Sbjct: 437 GDSAYMDEDGYFWFQGRVDDV-----IKTSG---ERVGPFEVESKLMEHPA--VAEAGVI 486
Query: 651 GGP-----EVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVVP---EF----PR 697
G P E++ FV L+ G+ +P ++LK ++ L P EF P+
Sbjct: 487 GKPDPVRGEIIKAFVALRPGY--EPSEELKEEIRGFVKKGLGA--HAAPREIEFKDKLPK 542
Query: 698 TASNKLLRRVLR 709
T S K++RRVL+
Sbjct: 543 TRSGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)
Query: 210 MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
+TY EL + +N L +GD +AI + +Y A +G I
Sbjct: 12 VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324
A EIA + S AK + +++ P +L + V
Sbjct: 68 WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 374
++ + ++ P P+ ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
D S ++Y EL+ V +A L + +GD + + +P +V +I+LA++ G +V
Sbjct: 60 DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
++ S + EI R+ FT P + L + I +P +
Sbjct: 120 TTMNPSSSLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDF 169
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
+ D+ P+P + D V I++SSGTTG K + T
Sbjct: 170 DSKRIEFPKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219
|
Length = 560 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 266
+TY E + V +A AL D G + I ++ ++ LA + AG VS A S
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 318
+ + A +L+ + K + +F Q +++ L A L V
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191
Query: 319 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
I DL+ ++V D V LF+SG+TG PKA+ T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241
Query: 378 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 429
Q + + E P +L W MG F+ L G TL +
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Query: 430 GSPLERSFGKFVQ---DAGVTVLGTVP 453
G PL F + ++ + TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 129/546 (23%), Positives = 195/546 (35%), Gaps = 101/546 (18%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYL 251
+A+VW D Y EL Q +A+ L D +AI + + ++ L
Sbjct: 1148 IALVWDGGSLD--------YAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + + A +A L S + + TQ S +L
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ-------------SHLLER----- 1241
Query: 312 IVLPAIGNDVGIPLREQDL-SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
LP I L L SW + H D + ++++SG+TG+
Sbjct: 1242 --LPQAEGVSAIALDSLHLDSWPSQAPGLHLHG------------DNLAYVIYTSGSTGQ 1287
Query: 371 PKAIPWTQLSSIRCTAE--GW--AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
PK + T AE W A L DV + + + F + G L
Sbjct: 1288 PKGVGNTH----AALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLV 1343
Query: 427 LYQGSPLE----RSFGKFVQDAGVTVLGTVPSLVKAW----RNTNCLEGLDWTKIRSFAS 478
L P E + + VQ GVT L VP L++ + C T +R S
Sbjct: 1344 L--AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAAAC------TSLRRLFS 1395
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAF-GAFSTAT 531
GE L + N +++ +L + Y I + Q QA G S
Sbjct: 1396 GGEA--------LPA-ELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIG 1446
Query: 532 MTAGLV---ILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM- 584
G V +LD P C+G GL YLG L A+ F P+
Sbjct: 1447 RPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPA--LTAER----FVPDPLG 1500
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILETAA 643
G L R GD + G + GR D + L G + EI+ R+ Q + AA
Sbjct: 1501 EDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPG---VAQAA 1557
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNK 702
+ V G + LV + + G ++ ++LK + + + P + + P S K
Sbjct: 1558 VLVREGAAGAQ-LVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGK 1616
Query: 703 LLRRVL 708
L RR L
Sbjct: 1617 LDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ ++ +Q +A AL ++ GD IAI +I LAI +AG+V V + + A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 326
I L S AK +F K+ +KA V LP I L+
Sbjct: 68 ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
+ W D L++ P P+ P + + I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 691 VVPEFPRTASNKLLRRVLRDQIKHE 715
V E P+T S K+LRR+LR E
Sbjct: 9 FVDELPKTRSGKILRRLLRAIALGE 33
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
VA+V + R +TY EL E+ +A+ L GD + I + V L
Sbjct: 20 VALVCGDRR--------LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF-PLYSKVLGAAP-L 309
A V V++ + E+ L S A + + R+F P ++VL P L
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYE-------REFAPRVAEVLPRLPKL 124
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP--VYNPVDAVVNILFSSGT 367
+ +V + + G L + ++D L++ SP +Y +L++ GT
Sbjct: 125 RTLV--VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY--------LLYTGGT 174
Query: 368 TGEPKAIPWTQ 378
TG PK + W Q
Sbjct: 175 TGMPKGVMWRQ 185
|
Length = 533 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
+ GDI GY+ + R D + + G E+E V A +L+ AAI V
Sbjct: 436 KTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL-AALPGVLQCAAIGVPDEKS 494
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS--KLNPLFKVVPEFPRTASNKLLRRVLR 709
G E + +FVV+K G T +++ M +A + K+ + E P T K+LRR LR
Sbjct: 495 G-EAIKVFVVVKPGETLTKEQV-MEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552
Query: 710 DQ 711
D+
Sbjct: 553 DE 554
|
Length = 562 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG- 650
R GD+ G + Q R D++ LGG + EIE A E++ AA V A
Sbjct: 409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIE----HALEALPGVAAAQVVGATR 464
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTAS---N 701
G V V FV+ G + L A + L FKV V FP T S
Sbjct: 465 DGKTVPVAFVIPTDGASPDEAGLM----AACREALAG-FKVPARVQVVEAFPVTESANGA 519
Query: 702 KLLRRVLRDQ 711
K+ + LR+
Sbjct: 520 KIQKHRLREM 529
|
Length = 540 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVV 661
G++ ++ R+ D + GG SSVE+E V + + +LETA +++ P G E FVV
Sbjct: 434 GHVEIKDRSKDIIISGGENISSVEVENVLYKYPK-VLETAVVAMPHPTWG--ETPCAFVV 490
Query: 662 LKKGFTSQPDKLKMIFS------KAIQSKLNPLF----KVV--PEFPRTASNKLLRRVLR 709
L+KG T++ D++ + + + + L P F KVV E P+ + K+L+ LR
Sbjct: 491 LEKGETTKEDRVDKLVTRERDLIEYCRENL-PHFMCPRKVVFLQELPKNGNGKILKPKLR 549
Query: 710 DQIK 713
D K
Sbjct: 550 DIAK 553
|
Length = 579 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 30/131 (22%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS---VSPA- 649
GD+ GY+ V GR DD + GG EIE V +L+ A+ V
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAV-------LLQHPAVEEAAVVGVP 345
Query: 650 ----GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTA 699
G + V FVV + + KL +K +PE PR A
Sbjct: 346 DDEWG---QRPVAFVV-----PNDDPVSVEELQAFLADKLAK-YKRPKRWYPLPELPRNA 396
Query: 700 SNKLLRRVLRD 710
S K+ R LR
Sbjct: 397 SGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYV 259
C + + ++Y ++R+ V+ AL T SK I I MP + A I Y A +L+G +
Sbjct: 38 CWDEQLGKLSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKI 93
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPA 316
V I S RE+ + + T +++ + G P I +
Sbjct: 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEE 147
Query: 317 IGNDVGIPLREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGE 370
+ ++LS+ + S+ + ++ +P D V ILF+SGT
Sbjct: 148 V---------RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKL 197
Query: 371 PKAIPWTQLSSI 382
PK +P T + +
Sbjct: 198 PKGVPLTHANLL 209
|
Length = 539 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL + +A AL GD +A+ P + V++YLAI AG V V + S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 270 REIA 273
E+A
Sbjct: 73 AELA 76
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244
T I E V +Y EL E++ AN ++ KGD +A+ +
Sbjct: 18 DVYGHKTALIF--ESS--GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCP 73
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+ + + G ++V I E A L+ S+A + T P+Y ++
Sbjct: 74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQ 127
Query: 305 --GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
A PL+ I L + D F P Y+P + D IL
Sbjct: 128 QEDATPLRHICLTRVALP-------ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEIL 179
Query: 363 FSSGTTGEPKAI 374
F+SGTT PK +
Sbjct: 180 FTSGTTSRPKGV 191
|
Length = 517 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ K GY+ + GR D + GG E+E D+ ++E+A I V G
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK------VVPEFPRTASNKLLRRV 707
E + VV K G + D+ ++ A++ +L FK V E PR K+ + +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAIL--AALKGRLAR-FKQPKRVFFVDELPRNTMGKVQKNL 494
Query: 708 LRDQIK 713
LR+Q
Sbjct: 495 LREQYA 500
|
Length = 504 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVII 249
+ VA+V+ + +TY+EL E+ +A+ L GD +AI + + V+
Sbjct: 2 DAVAVVFGDQS--------LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVA 53
Query: 250 YLAIILAG--YVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
LA++ AG YV + A A R +A L S AK + T
Sbjct: 54 ILAVLKAGAAYVPLDPAYP-AER-LAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY E+ A AL ++ KG + + +P I+ L I+ AG V +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
EI + + AK I T D Y KV G L IVL E
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 378
++WK+ L + D + + + + FSSGTTG K + T
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206
|
Length = 546 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E E+V +A AL S + I ++ ++ LA + AG Y VS A S
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ +LR + +F D +++ L A + + A+ V
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
+ L++ P + V D + LF+SG+TG PKA+ T
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E QV +A AL + S + I ++ ++ LA + AG VS A S
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ A +LR + +F +D +++ L A L + + A+ G
Sbjct: 86 LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136
Query: 323 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
P L+ P + V D V LF+SG+TG PKA+ T
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186
Query: 379 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 432
++ A+ W + + + W L W G F+ L NG TL + G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243
Query: 433 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 459
+ F + ++ + TV VP K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E+V +A L + GD +A+ + + + A+ G V V I +
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 270 REIATRLRVSKAKGIFT 286
E+A L S A+ I
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 69/303 (22%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLS--SIRCTAEGWA-HIDLKVGDVY-CW-PTNLGWVM 410
D + ++++SGTTG PK + L+ ++ A I L GD + P L V
Sbjct: 88 DDLATLIYTSGTTGNPKGV---MLTHRNLLAQAAALLEVIPLSPGDRVLSFLP--LAHVF 142
Query: 411 GPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
+ + +GA + + SP + + +++ TV VP +
Sbjct: 143 EQRLGEYLPLSSGARVN-FAESP--ETLLEDLREVRPTVFFAVPRV-------------- 185
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
W KI + + V L K + A+ GG L A G+ L P+ F
Sbjct: 186 WEKIYAGIE----AKVAAAGPLKRKLFRWAL----GGGRLRFAVSGGAPLPPEVLEFFR- 236
Query: 530 ATMTAGLVILD-----ECGVPY---PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
G+ IL+ E +G VG G R+ A+ E+ RG
Sbjct: 237 ---ALGIPILEGYGLTETSGVATVNRPGDIRIGTVG--KPLPGVEVRI--AEDGEILVRG 289
Query: 582 MPMYKGMCLR---------------RHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSV 625
+ KG + GDI + G++++ R D + GG +
Sbjct: 290 PNVMKGY-YKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQ 348
Query: 626 EIE 628
IE
Sbjct: 349 PIE 351
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E V +A L + KGD +A+ M + + VI Y AI+ AG VVV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+ L S A+ +
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 47/190 (24%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + + A + ++ +TY +L+E +A +D++ I + M+
Sbjct: 13 QTQPDFPAYDYLGEK--------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPE 64
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---K 302
+ +L + AG+ + + S A I + V+K I + + PL
Sbjct: 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE-------ELPLEILGIP 117
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ LK I D ++ D NYY I+
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKGDD----------------NYY------------II 149
Query: 363 FSSGTTGEPK 372
F+SGTTG+PK
Sbjct: 150 FTSGTTGKPK 159
|
Length = 503 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R GDI GY+ + R + + G + + ++E V E I++ A +V
Sbjct: 433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE-IIDAAVTAVPDKEC 491
Query: 652 GPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKV-----VPEFPRTASNKLLR 705
G E+ V FVV ++G T SQ + + ++ P KV V P++ + K+LR
Sbjct: 492 G-EIPVAFVVRRQGSTLSQEAVINYV-----AKQVAPYKKVRKVVFVQSIPKSPAGKILR 545
Query: 706 RVLRDQIKHELSVRSRI 722
R L+ + SV SR+
Sbjct: 546 RELKRSLT--NSVSSRL 560
|
Length = 560 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
L A+ + +K D +++ P T ++ A+ +AG V+ I A IA LR +K
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 281 AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 336
K +F R F PL +VL +L + +++ +P + E D +
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 337 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
+DY P P+ + ++ D +++ ++SGTT +PK + + + T
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 388 ---GWAHIDLKVGDVYCW 402
GW ++ VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232
|
Length = 579 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++ EL ++ A L + GD +A+ M A + G V + F
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 326
EIA L S A+ + +L G P VL + P + A + +
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+ W+ +L+ + Y P PV +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170
|
Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.9 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.86 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.7 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.52 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.37 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 98.92 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.91 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.25 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.77 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.47 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.42 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.1 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 91.66 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-101 Score=888.93 Aligned_cols=717 Identities=62% Similarity=1.054 Sum_probs=606.5
Q ss_pred CCCcccccChhHHHHcCCChhHHHHHHHHHHHHHhhccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccC
Q 004952 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK 80 (722)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (722)
|||.+++|+++||+++|+..+++++|.+.|+++...+++ +-..++-.. ..+.|+|..+.+++|+|++.++-++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (728)
T PLN03052 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGA-SPPSIWRRI-SQSLLTPSHPFALHQLMYYSCYKNWDSDTL 81 (728)
T ss_pred ccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-CchHHHHHH-HHHhcCCCCCccHHHHhhhhcccCCCcccc
Confidence 799999999999999999999999999999999977653 566777777 889999999999999999999999988877
Q ss_pred CCCCccCCCccccccccHHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCC
Q 004952 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK 160 (722)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 160 (722)
++.+.|.|.+....++++..+++..+.......|...+.+|+.|+++++++++.||..+++.+.+.|.+++.++++..+.
T Consensus 82 ~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~ 161 (728)
T PLN03052 82 GPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDE 161 (728)
T ss_pred CCCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCC
Confidence 78889999988888889988888764443334477777899999999999999999999999988999999999875333
Q ss_pred CCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 004952 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (722)
Q Consensus 161 ~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~ 239 (722)
..+..+||.++.+|++++|++++. +++||++|+++.+++.+++..+++||+||+++++++|++|++. +++||+|+++
T Consensus 162 ~~~~~~wf~g~~ln~~~~~l~~~~--~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~ 239 (728)
T PLN03052 162 SNPGGQWLPGAVLNVAECCLTPKP--SKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239 (728)
T ss_pred CCCCCEECCCCEeEHHHHHHHHHh--ccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 456679999999999999998864 4689999999987632233456899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCC
Q 004952 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (722)
Q Consensus 240 ~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (722)
++|++++++++|||+++|++++|++|+++.+++.+++++++++++|+++...++++.++....+.+.....++++.....
T Consensus 240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~ 319 (728)
T PLN03052 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGK 319 (728)
T ss_pred eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999998887888888777776655555666654321
Q ss_pred CCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCE
Q 004952 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (722)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~ 399 (722)
........+..+|++++.............+...++++++||+|||||||+||||+++|++++..+......++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~ 399 (728)
T PLN03052 320 SVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDI 399 (728)
T ss_pred ccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcE
Confidence 11111122356688876543210001112223346799999999999999999999999998877766666788999999
Q ss_pred EEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEee
Q 004952 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (722)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~ 479 (722)
++++++++|+++.+.++.+|++|++++++++.++++.+++++++++||++.++|++++.|.+.......++++||.+++|
T Consensus 400 ~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~ 479 (728)
T PLN03052 400 VCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479 (728)
T ss_pred EEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence 99999999999998899999999999999877777889999999999999999999999988765566789999999999
Q ss_pred cCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe
Q 004952 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (722)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (722)
||+++++...|+...++..+++|.||+||++++++......+...+++|+|++|++++|+|++|+++|.|++++|||++.
T Consensus 480 Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~ 559 (728)
T PLN03052 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALF 559 (728)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEe
Confidence 99999999888877665568999999999987655554444556688999999999999999999999987557999998
Q ss_pred cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcc
Q 004952 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (722)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (722)
+.+++...++++++.+..||..+|..+|++||+|||++++++||+++|+||+||+||++|+||++.|||++|+..||+|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~ 639 (728)
T PLN03052 560 PLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVL 639 (728)
T ss_pred CCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcc
Confidence 88777766677777778899888888888999999999999999999999999999999999999999999854799999
Q ss_pred eeEEEeecCCCCCceEEEEEEEec--CCCCCCHHHHHHHHHHHH----HhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 640 ETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAI----QSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 640 ~~~vv~~~~~~~g~~~l~a~vv~~--~~~~~~~~~l~~~l~~~l----~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
||+|++++++..|++++++||+++ ++...+.++|++++++.+ +.+++|. ++++++||+|+|||++|+.|++++
T Consensus 640 eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~ 719 (728)
T PLN03052 640 ETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719 (728)
T ss_pred eEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHH
Confidence 999999999866558999999998 555556677777765554 5567774 558999999999999999999998
Q ss_pred hhhhhhcccC
Q 004952 713 KHELSVRSRI 722 (722)
Q Consensus 713 ~~~~~~~~~~ 722 (722)
.+... +|||
T Consensus 720 ~~~~~-~~~~ 728 (728)
T PLN03052 720 AQELS-RSKL 728 (728)
T ss_pred Hhhhh-ccCC
Confidence 77765 7775
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-85 Score=703.17 Aligned_cols=510 Identities=27% Similarity=0.422 Sum_probs=434.2
Q ss_pred CcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCC
Q 004952 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT 243 (722)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s 243 (722)
+||.++.+|.+++|++++... ..+|++|+++.++. ++. +++||+||.++++++|+.|++. + +||||+++||++
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~-~~~~~~aii~~~e~--~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~ 75 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEA-DRPDDTAIIFDGED--GLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNS 75 (528)
T ss_pred CCcCCceeechhhhhhhhhhc-cCCCceEEEEEcCC--CCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCC
Confidence 599999999999999997522 34899999999773 222 7999999999999999999975 7 999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCC
Q 004952 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (722)
Q Consensus 244 ~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (722)
++++++||||+|+||+++|+.+.++++.+++++++++++++|++++..++++.++....+.+.... ++++....
T Consensus 76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~----- 149 (528)
T COG0365 76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG----- 149 (528)
T ss_pred HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc-----
Confidence 999999999999999999999999999999999999999999999999999988887777766555 44443221
Q ss_pred CCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEE
Q 004952 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCW 402 (722)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~ 402 (722)
.+|.++.+..+. ..+....+++|++|++|||||||+||||+|+|++++.... .....+.+.++|++++
T Consensus 150 ------~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~ 218 (528)
T COG0365 150 ------LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN 218 (528)
T ss_pred ------ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence 677887766543 3344457899999999999999999999999998755554 4445688889999999
Q ss_pred ecCccccchhHH-HHHHhhcCCEEEEecCCCC--hhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEee
Q 004952 403 PTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (722)
Q Consensus 403 ~~~~~~~~~~~~-~~~~L~~G~~lv~~~~~~~--~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~ 479 (722)
.++++|.++.+. +|++|++|+|++++++.++ +..++++|++++||+++++|+.+++|.+......+++++||.+.++
T Consensus 219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 999999999965 8999999999999987665 7899999999999999999999999999876677899999999999
Q ss_pred cCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe
Q 004952 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (722)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (722)
||+|+++.++|+.+.++ ++|.+.||+||+++++....+ +...++.|+|+||+++.|+|++|+++|+|+ |+|++.
T Consensus 299 GEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~ 372 (528)
T COG0365 299 GEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVR 372 (528)
T ss_pred CCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEe
Confidence 99999999999998874 999999999999976666555 445566699999999999999999999997 899995
Q ss_pred cccCCCcccccc-ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCc
Q 004952 560 PLYLGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (722)
Q Consensus 560 ~~y~~~~~~~~~-~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V 638 (722)
....+....|++ ++.+.+.|-. . ||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|+ +||+|
T Consensus 373 ~~~p~~~~~~w~d~er~~~~y~~------~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~-~hP~V 444 (528)
T COG0365 373 LPWPGMALTYWNDPERYKEAYFG------R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL-AHPAV 444 (528)
T ss_pred CCCchhhhhhhCCHHHHHHHHhh------c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHH-hCcce
Confidence 433333333333 3344333321 1 8999999999999999999999999999999999999999996 99999
Q ss_pred ceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHH----HhhcCCCe-eecCCCCCCCCchhhHHHHHHHHh
Q 004952 639 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI----QSKLNPLF-KVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 639 ~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l----~~~~~p~~-~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
.||+||+.+|+..| +.++|||++++|...+ +|++.|++++ ..+..|+. .++++||||.||||.|+.|++.+.
T Consensus 445 aEaAvVg~pd~~kg-~~v~afVvL~~g~~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 445 AEAAVVGVPDPGKG-QIVLAFVVLAAGVEPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred eeeEEEeccCCCCC-cEEEEEEEecCCCChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 99999999999999 8999999999987655 5555554444 44667744 499999999999999999999887
Q ss_pred h
Q 004952 714 H 714 (722)
Q Consensus 714 ~ 714 (722)
+
T Consensus 522 ~ 522 (528)
T COG0365 522 K 522 (528)
T ss_pred h
Confidence 4
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-85 Score=874.14 Aligned_cols=638 Identities=19% Similarity=0.203 Sum_probs=519.5
Q ss_pred ChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC-----CCccC--CCc
Q 004952 19 KLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLYWF--PSL 90 (722)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~ 90 (722)
..++..+|.+.|+++++. +.+++||++||++ |++.|+++|..+..|+ ||+||++++..... ..... ...
T Consensus 1412 ~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~-i~~~l~~~r~~~~~pL--Fq~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1488 (3956)
T PRK12467 1412 EVDGQASFQQLLQQVKQAALEAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMFNHQRDDHQAQAQLPGLSVESLSWE 1488 (3956)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHHhcccccCCCCCc--eeEEEEeecccccccccCCCceeEeeecC
Confidence 345667788888888777 6666999999999 9999999988888888 99999987643221 11111 112
Q ss_pred cccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCCc
Q 004952 91 DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTW 167 (722)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~w 167 (722)
...++|||++.+.+.++.+...+ |+. ++|++.++++|.++|.++|+++...++.+..++ ++..+.......|
T Consensus 1489 ~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~~~~~~~~ 1563 (3956)
T PRK12467 1489 SQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAERRQILEGW 1563 (3956)
T ss_pred CcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHhhhhHHhh
Confidence 34678899988877777787788 998 999999999999999999999998888877764 4544444445567
Q ss_pred CCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004952 168 LPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (722)
Q Consensus 168 ~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~ 244 (722)
+.+........+++. ..+++++||++|+++.++ .+||+||+++++++|++|++. +++|++|+++++||+
T Consensus 1564 ~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~ 1635 (3956)
T PRK12467 1564 NATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSL 1635 (3956)
T ss_pred cCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCH
Confidence 765443332333433 245689999999999877 999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCC
Q 004952 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (722)
Q Consensus 245 ~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (722)
++++++|||+|+|++|+|+||.+|.+|+.+++++++++++|++....... + .......+.+...
T Consensus 1636 ~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~~~------- 1699 (3956)
T PRK12467 1636 EMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL---P------LPDGLRSLVLDQE------- 1699 (3956)
T ss_pred HHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhC---c------cccCCcEEEeccc-------
Confidence 99999999999999999999999999999999999999999987532111 0 0001112222110
Q ss_pred CCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEec
Q 004952 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (722)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~ 404 (722)
.+..... ....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++++
T Consensus 1700 --------~~~~~~~-----~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~ 1766 (3956)
T PRK12467 1700 --------DDWLEGY-----SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFT 1766 (3956)
T ss_pred --------cchhccC-----CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEec
Confidence 0000111 111222345679999999999999999999999999999999988899999999999999
Q ss_pred CccccchhHHHHHHhhcCCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCC
Q 004952 405 NLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (722)
Q Consensus 405 ~~~~~~~~~~~~~~L~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~ 482 (722)
|++||++++++|.+|++|+++++.+.. .++..+++.|++++||++.++|++++.|..... ...++++||.+++|||+
T Consensus 1767 ~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~ 1845 (3956)
T PRK12467 1767 SFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEA 1845 (3956)
T ss_pred CccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEcccc
Confidence 999999999999999999999998743 467899999999999999999999999987422 23457899999999999
Q ss_pred CCcchHHHHHhhccCCcccccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
++++..+.|.+.+++.+++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|++ |||+|
T Consensus 1846 l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~--GEl~i 1923 (3956)
T PRK12467 1846 LEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA--GELYL 1923 (3956)
T ss_pred CCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc--eEEEe
Confidence 9999999888887778899999999999765543321 11234689999999999999999999999995 99998
Q ss_pred -----ecccCCCccccccccccccceeccccC-CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 559 -----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 559 -----~~~y~~~~~~~~~~~~t~~~f~~~p~~-~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
+.||++ +++.|+++|..+|+. +|.|||||||+|+|++||.|+|+||+|||||++|+||+|+|||++|.
T Consensus 1924 ~G~~v~~GYl~------~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~ 1997 (3956)
T PRK12467 1924 GGVGLARGYLN------RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLR 1997 (3956)
T ss_pred ccccccccccC------ChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHH
Confidence 456666 667899999999985 47899999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCC--------CHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchh
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--------QPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKL 703 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~--------~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKv 703 (722)
+||+|.+|+|++.+ ..++ ++++|||++.++... ..++++++|+++||.||+| .++.+++||+|+||||
T Consensus 1998 -~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKi 2074 (3956)
T PRK12467 1998 -EQGGVREAVVIAQD-GANG-KQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKL 2074 (3956)
T ss_pred -hCCCcceEEEEEec-CCCC-cEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCc
Confidence 99999999999986 3344 799999998754321 2468999999999999999 5669999999999999
Q ss_pred hHHHHHHHHh
Q 004952 704 LRRVLRDQIK 713 (722)
Q Consensus 704 dR~~L~~~~~ 713 (722)
||++|++...
T Consensus 2075 dr~~L~~~~~ 2084 (3956)
T PRK12467 2075 DRKALPAPDA 2084 (3956)
T ss_pred chhhCCCCcc
Confidence 9999987543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=864.38 Aligned_cols=632 Identities=16% Similarity=0.156 Sum_probs=510.2
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC--------CCCccCC
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--------PPLYWFP 88 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 88 (722)
+..++..+|.++|+++++. +.+++||++||++ |++.++..+ .+ + |++++++++.... ..+...+
T Consensus 2935 ~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~-~~---l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3007 (3956)
T PRK12467 2935 ASPRAEQTVSDWLQQVQAQNLALREFEHTPLAD-IQRWAGQGG-EA---L--FDSILVFENYPISEALKQGAPSGLRFGA 3007 (3956)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHhhccCC-CC---C--cceEEEeecCCchhhhhccCCCCceeec
Confidence 3455677888888888777 6666999999999 999987432 33 4 5666666553211 1111111
Q ss_pred C-ccccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCC
Q 004952 89 S-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (722)
Q Consensus 89 ~-~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (722)
. .....+|+|++.+.. ++.+...+ |+. ++|++.+++++.++|.++|+++...++.+...+ +...+.....
T Consensus 3008 ~~~~~~~~~~l~l~~~~-~~~~~~~~~y~~-----~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~~~~ 3081 (3956)
T PRK12467 3008 VSSREQTNYPLTLAVGL-GDTLELEFSYDR-----QHFDAAAIERLAESFDRLLQAMLNNPAARLGELPTLAAHERRQVL 3081 (3956)
T ss_pred ccccccccCceEEEecc-CcceeEEEEech-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHHHHH
Confidence 1 123467888887654 44666666 888 999999999999999999999988888776654 3333333334
Q ss_pred CCcCCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcC
Q 004952 165 GTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (722)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~ 241 (722)
..|+..........+++. ..+++++||++|+++.+. ++||+||+++++++|++|++. +++|++|+|+++
T Consensus 3082 ~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~ 3153 (3956)
T PRK12467 3082 HAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVE 3153 (3956)
T ss_pred HhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeC
Confidence 578765444333334433 246689999999999887 999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCC
Q 004952 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321 (722)
Q Consensus 242 ~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (722)
||+++++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... + .......+.+..
T Consensus 3154 ~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~---~------~~~~~~~~~~~~----- 3219 (3956)
T PRK12467 3154 RSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQL---P------APAGDTALTLDR----- 3219 (3956)
T ss_pred CCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhc---c------cccCCceeeecc-----
Confidence 99999999999999999999999999999999999999999999987542110 0 000111111110
Q ss_pred CCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEE
Q 004952 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (722)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l 401 (722)
..... .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|+++
T Consensus 3220 -------------~~~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l 3282 (3956)
T PRK12467 3220 -------------LDLNG----YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVL 3282 (3956)
T ss_pred -------------hhhcc----cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEE
Confidence 00000 0111222345689999999999999999999999999999999998999999999999
Q ss_pred EecCccccchhHHHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 402 WPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
+++|++|+.+++++|.+|+.|++++++++ ..++..+++.|++++||++.++|++++.|++.. ...++++||.+++||
T Consensus 3283 ~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~gG 3360 (3956)
T PRK12467 3283 LFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFGG 3360 (3956)
T ss_pred EecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEec
Confidence 99999999999999999999999999883 257889999999999999999999999998753 234578999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcCC----cCccccccccCCCceEEEECCCCCcCCCCCCccceE
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel 556 (722)
|++++++.+++.+.+++++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|++ |||
T Consensus 3361 e~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~--GEL 3438 (3956)
T PRK12467 3361 EAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVA--GEL 3438 (3956)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCC--ceE
Confidence 9999999998888777888999999999987655432211 1234689999999999999999999999996 999
Q ss_pred EE-----ecccCCCccccccccccccceecccc-CCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHH
Q 004952 557 GL-----FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630 (722)
Q Consensus 557 ~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~ 630 (722)
+| +.||++ +++.|+++|..+|+ .+|.|||||||+|+|++||+|+|+||+|+|||++|+||+|+|||++
T Consensus 3439 ~i~G~~v~~GY~~------~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~ 3512 (3956)
T PRK12467 3439 YIGGVGLARGYHQ------RPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEAR 3512 (3956)
T ss_pred EEcchhhhhhccC------CcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHH
Confidence 98 456666 67799999999998 6789999999999999999999999999999999999999999999
Q ss_pred HhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHH
Q 004952 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 631 l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~ 709 (722)
|. +||+|.+|+|++..+. .+ ++++|||++..+.....++++++|+++||.||+| .++.+++||+|+||||||++|+
T Consensus 3513 l~-~~p~V~~a~v~~~~~~-~~-~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~ 3589 (3956)
T PRK12467 3513 LL-QHPSVREAVVLARDGA-GG-KQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALP 3589 (3956)
T ss_pred Hh-hCcccceEEEEEecCC-CC-cEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcC
Confidence 95 9999999999987543 45 7999999988755566789999999999999999 5669999999999999999998
Q ss_pred HHHhh
Q 004952 710 DQIKH 714 (722)
Q Consensus 710 ~~~~~ 714 (722)
+....
T Consensus 3590 ~~~~~ 3594 (3956)
T PRK12467 3590 DPDAK 3594 (3956)
T ss_pred CCCcc
Confidence 76443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=712.61 Aligned_cols=579 Identities=20% Similarity=0.261 Sum_probs=458.6
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
.+|+-++++++++++.||..+.+.+ ..|.+++.++++. .....+||.++.+|.++++++++.....+||++|+++.
T Consensus 8 ~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~---~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~ 83 (647)
T PTZ00237 8 FDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSG---DEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIYE 83 (647)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCC---CCCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEEE
Confidence 5678899999999999999999987 6999999999864 22347999999999999999886522237999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
.+. .+..+++||+||.++++++|+.|++. |++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 84 ~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 161 (647)
T PTZ00237 84 CPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIE 161 (647)
T ss_pred cCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 441 12246899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhhcC------CCcEEEEcCCCCC--C------CCCCCCCCCCHHHHhcccCCCC
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGND--V------GIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+++++++|+++...+.++.++....+.+.. ..+++++...... . .....+....|++++.......
T Consensus 162 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (647)
T PTZ00237 162 TITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENN 241 (647)
T ss_pred hcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhcccc
Confidence 999999999876655555544443332221 1233333211100 0 0001113355777654321100
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChH-HHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
...........+++++||+|||||||+||||+++|++ +.+........+....++++++.++++|..+...++.+|+.|
T Consensus 242 ~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G 321 (647)
T PTZ00237 242 QSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321 (647)
T ss_pred CCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCC
Confidence 1111223445789999999999999999999999998 444333334456778899999999999998777789999999
Q ss_pred CEEEEecCCC-C----hhhHHHHHHHhCCcEEechhHHHHHHHhcCC-----CCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 423 ATLALYQGSP-L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 423 ~~lv~~~~~~-~----~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-----~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
++++++++.. . +..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++.
T Consensus 322 ~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~ 401 (647)
T PTZ00237 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIE 401 (647)
T ss_pred cEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHH
Confidence 9999987632 2 4679999999999999999999999987532 1345789999999999999999999998
Q ss_pred hhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEec----ccCCCccc
Q 004952 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFP----LYLGASDR 568 (722)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~----~y~~~~~~ 568 (722)
+.+ +++++|.||+||++++++..........+++|+|++|++++|+|++|+++|.|+. |||++.. +++. .+
T Consensus 402 ~~~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~~~--gy 476 (647)
T PTZ00237 402 NKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSFAT--TF 476 (647)
T ss_pred Hhc-CCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchhhC--ce
Confidence 776 5899999999999865543332222334789999999999999999999999985 9999952 2221 12
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+.+++.+.++|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||.|.+|+|+++++
T Consensus 477 ~~~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavvg~~~ 550 (647)
T PTZ00237 477 YKNDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSIGIYD 550 (647)
T ss_pred eCCHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEEeeEc
Confidence 234556666775432 3 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCC---CCCH----HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 649 AGGGPEVLVIFVVLKKGF---TSQP----DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~---~~~~----~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+..| +.++|||+++++. ..+. ++|+++++++|+.+++|+ ++++++||+|+||||+|+.|++++.++
T Consensus 551 ~~~g-~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 551 PDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred CCCC-CEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC
Confidence 9888 8999999998532 2333 456778888899999995 559999999999999999999998654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-82 Score=858.57 Aligned_cols=624 Identities=19% Similarity=0.215 Sum_probs=513.5
Q ss_pred ChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC----CCccC--CCcc
Q 004952 19 KLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYWF--PSLD 91 (722)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~ 91 (722)
..++..+|.+.|+++.+. ..+++||++||++ |++.++++++.+.+|+ ||++|++++..... ...+. ....
T Consensus 2896 ~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 (5163)
T PRK12316 2896 QVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMYNHQSGERAAAQLPGLHIESFAWDG 2972 (5163)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhccccccCCCCc--eeEEEeeeccccccccCCCceeEeeeccC
Confidence 445667888888888877 5666999999999 9999999988888888 89999887643221 11111 1123
Q ss_pred ccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCCcC
Q 004952 92 QSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTWL 168 (722)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~w~ 168 (722)
...++||.+.+.+.++++...+ |+. ++|++.+++++.++|.++|+++...++.+...+ ++..+.......|+
T Consensus 2973 ~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~~~~~~~~ 3047 (5163)
T PRK12316 2973 AATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMVENPQRSVDELAMLDAEERGQLLEAWN 3047 (5163)
T ss_pred CccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHHHHHHHhC
Confidence 4567899888877777787787 988 999999999999999999999988887776654 33333223334576
Q ss_pred CCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 004952 169 PGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (722)
Q Consensus 169 ~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~ 245 (722)
..........+++. ..+++++|+++|+.+.++ .+||+||+++++++|++|++. +++|++|+|++++|++
T Consensus 3048 ~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~ 3119 (5163)
T PRK12316 3048 ATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLE 3119 (5163)
T ss_pred CCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHH
Confidence 55433333334443 346689999999999887 999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCC
Q 004952 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325 (722)
Q Consensus 246 ~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (722)
+++++|||+|+|++|||+||++|.+|+.+++++++++++++++.. .++ ......++.+....
T Consensus 3120 ~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~-----~~~------~~~~~~~~~~~~~~------- 3181 (5163)
T PRK12316 3120 MVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLP------LAQGVQVLDLDRGD------- 3181 (5163)
T ss_pred HHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc-----cCC------ccCCccEEEecccc-------
Confidence 999999999999999999999999999999999999999998642 000 00011122221100
Q ss_pred CCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecC
Q 004952 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (722)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~ 405 (722)
.. .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|+++++++
T Consensus 3182 -----------~~-----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~ 3245 (5163)
T PRK12316 3182 -----------EN-----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTT 3245 (5163)
T ss_pred -----------cc-----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecC
Confidence 00 00112223456799999999999999999999999999999999989999999999999999
Q ss_pred ccccchhHHHHHHhhcCCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCC
Q 004952 406 LGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS 483 (722)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l 483 (722)
++||.+++++|.+|++|+++++.+.. .++..+.+.++++++|++.++|++++.+.+.. ....+++||.+++|||++
T Consensus 3246 ~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~~~gGe~l 3323 (5163)
T PRK12316 3246 FSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRIVCGGEAL 3323 (5163)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEEEEccccC
Confidence 99999999999999999999998643 36778999999999999999999999998653 233468999999999999
Q ss_pred CcchHHHHHhhccCCcccccccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE----
Q 004952 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL---- 558 (722)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v---- 558 (722)
++++.++|.. +.+++|.||+||++++++..... ......+||+|++|++++|+|++++++|+|++ |||+|
T Consensus 3324 ~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~ 3398 (5163)
T PRK12316 3324 PADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GELYLGGEG 3398 (5163)
T ss_pred CHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ceEEecccc
Confidence 9999888872 56899999999999876554432 22345799999999999999999999999995 99998
Q ss_pred -ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCC
Q 004952 559 -FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637 (722)
Q Consensus 559 -~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~ 637 (722)
+.||++ +++.|+++|..+|+.+|.|||||||+|||++||.|+|+||+|+|||++|+||+|+|||++|. +||+
T Consensus 3399 v~~GY~~------~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~-~~~~ 3471 (5163)
T PRK12316 3399 LARGYHN------RPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLL-EHPW 3471 (5163)
T ss_pred cchhcCC------ChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHH-hCCC
Confidence 456666 67799999999999889999999999999999999999999999999999999999999995 9999
Q ss_pred cceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHH
Q 004952 638 ILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 638 V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
|.+|+|++.. + ++++|||++..+.....++++++|+++||.||+| .++.+++||+|+|||+||++|++.
T Consensus 3472 V~~a~v~~~~----~-~~l~a~vv~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L~~~ 3541 (5163)
T PRK12316 3472 VREAVVLAVD----G-RQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRP 3541 (5163)
T ss_pred cceEEEEEcc----C-CeEEEEEEcCCcCcccHHHHHHHHHhhCCcccCcceeeeHhhcCCCCCcchhHHhcCCC
Confidence 9999998875 3 7899999987655555688999999999999999 566999999999999999999764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-82 Score=855.65 Aligned_cols=634 Identities=20% Similarity=0.210 Sum_probs=517.2
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC-------CCCc--cC
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG-------PPLY--WF 87 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~ 87 (722)
+...+..+|.+.++++.+. ..+++||++||++ +++.|++.+..+..|+ ||+++++++.... .... ..
T Consensus 346 ~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (5163)
T PRK12316 346 SVFDGRTRVATLLAGVKDTVLGAQAHQDLPFER-LVEALKVERSLSHSPL--FQVMYNHQPLVADIEALDTVAGLEFGQL 422 (5163)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhCCCCCCCCCCc--EEEEEEeecccccccccccCCCceEEee
Confidence 3445566788888888877 5566999999999 9999999988888888 9999998753211 1111 11
Q ss_pred CCccccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCC
Q 004952 88 PSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (722)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (722)
+......++||.+.+.+.++++...+ |+. ++|++++++++.++|.++|+++...++.+..++ +...+.....
T Consensus 423 ~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~~~~~ 497 (5163)
T PRK12316 423 EWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAEERGQLV 497 (5163)
T ss_pred ccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHH
Confidence 22234568898888877778888888 988 999999999999999999999988888877664 3333222223
Q ss_pred CCcCCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcC
Q 004952 165 GTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (722)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~ 241 (722)
..|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|+.|++. +++|++|+|+++
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~ 569 (5163)
T PRK12316 498 EGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVLVGVAME 569 (5163)
T ss_pred HHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 345543322111223332 235689999999998777 999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCC
Q 004952 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321 (722)
Q Consensus 242 ~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (722)
|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++|++....... + .......+.+...
T Consensus 570 ~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~~~---- 636 (5163)
T PRK12316 570 RSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL---P------LAAGVQVLDLDRP---- 636 (5163)
T ss_pred CCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC---C------cccCceEEEecCc----
Confidence 99999999999999999999999999999999999999999999987532110 0 0001111222100
Q ss_pred CCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEE
Q 004952 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (722)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l 401 (722)
....... ....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++++++
T Consensus 637 -----------~~~~~~~-----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l 700 (5163)
T PRK12316 637 -----------AAWLEGY-----SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVL 700 (5163)
T ss_pred -----------chhhccC-----CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 0000000 011122345679999999999999999999999999999999999999999999999
Q ss_pred EecCccccchhHHHHHHhhcCCEEEEecC--CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEee
Q 004952 402 WPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (722)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~ 479 (722)
+++|++|+++++++|.+|++|+++++++. ..++..+++.|++++||++.++|++++.|++... ..++++||.+++|
T Consensus 701 ~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~g 778 (5163)
T PRK12316 701 QKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCS 778 (5163)
T ss_pred eeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEe
Confidence 99999999999999999999999999864 3578899999999999999999999999987532 3357899999999
Q ss_pred cCCCCcchHHHHHhhccCCcccccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
||++++++.+++...+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|+. |||+|
T Consensus 779 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~i 856 (5163)
T PRK12316 779 GEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL--GELYL 856 (5163)
T ss_pred eccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc--eEEEe
Confidence 999999999998888888899999999999864433322 223345689999999999999999999999995 99998
Q ss_pred -----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 559 -----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
+.||++ +++.|++.|..+|+.+|.|||+|||+|++++||.|+|+||+|||||++|+||+|+|||++|.
T Consensus 857 ~G~~v~~GYl~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~- 929 (5163)
T PRK12316 857 AGRGLARGYHG------RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLL- 929 (5163)
T ss_pred cccccChhhCC------ChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHH-
Confidence 356665 67789999999998888999999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
+||+|.+|+|++.+ + +.++|||++.++.....++++++++++||.||+| .++++++||+|+||||||++|++..
T Consensus 930 ~~p~V~~a~V~~~~----~-~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316 930 EHPWVREAAVLAVD----G-KQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred hCCCcceEEEEEcC----C-CeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCcc
Confidence 99999999999986 4 7899999998766667789999999999999999 4669999999999999999998754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-79 Score=703.19 Aligned_cols=572 Identities=23% Similarity=0.363 Sum_probs=458.4
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEec
Q 004952 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (722)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (722)
+|+.+++++++++..||..+++. +.|.+++.++++.. ..+..+||.++.+|.++++++++. +++|+++|+++.+
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 75 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYS--NPPFARWFAGGRTNLCHNALDRHL--DERGEQLALVTVS 75 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCC--CCCcCccCCCCEeeHHHHHHHHHh--CcCCCCeEEEEEc
Confidence 46888999999999999999997 57999999987542 235679999999999999998764 6789999999854
Q ss_pred CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHh
Q 004952 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (722)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~ 278 (722)
. +.+..+++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++
T Consensus 76 ~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 153 (628)
T TIGR02316 76 S--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDD 153 (628)
T ss_pred C--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHh
Confidence 2 122345899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeccchhcCCccccchHHHhh---c---CCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCcc
Q 004952 279 SKAKGIFTQDFILRGGRKFPLYSKVLG---A---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (722)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (722)
++++++|+++...++++.++....+.+ . ....++++...... ..........|.++...... ...+...
T Consensus 154 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 228 (628)
T TIGR02316 154 ATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP-MRLIPGRDVDYAALRTQHED----AQVPVEW 228 (628)
T ss_pred cCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC-cCcccCccccHHHHhhcccc----CCCCcee
Confidence 999999999877666666555443322 1 12334444321111 00111123456665543211 1122233
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHH-HHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~ 430 (722)
..+++++||+|||||||.||||+++|++++. ........++++++|++++.++++|+.+. +.++.+|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 5679999999999999999999999999753 44455566889999999999999999986 678899999999999875
Q ss_pred C---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 431 ~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
. .++..++++|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++...+ +.+++|.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEeccc
Confidence 3 367789999999999999999999999987643 2355789999999999999999998887765 578999999
Q ss_pred ccccccccccCCc---CCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEe-c---ccCCCcccccccccccc
Q 004952 506 GTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-P---LYLGASDRLLNADHEEV 577 (722)
Q Consensus 506 ~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~-~---~y~~~~~~~~~~~~t~~ 577 (722)
+||++..++.... ..+...+++|+|++|++++|+|+ +|+++|.|+. |||++. | +|+.+ ++.+++.+.+
T Consensus 388 ~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~~--~~~~~~~~~~ 463 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLST--VWGDDARFLK 463 (628)
T ss_pred ccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCcccccc--ccCChHHHHH
Confidence 9999854433222 12334578899999999999997 7999999985 999994 3 33331 1223332222
Q ss_pred -ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 578 -YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 578 -~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
+|... +++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 464 ~~~~~~----~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~ 537 (628)
T TIGR02316 464 TYWSHF----KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVA 537 (628)
T ss_pred hhhhcC----CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEE
Confidence 22211 2459999999999999999999999999999999999999999995 9999999999999999888 899
Q ss_pred EEEEEecCCCCC--------CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 657 VIFVVLKKGFTS--------QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 657 ~a~vv~~~~~~~--------~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++||+++++... ..++|+++++++|+.|++|. ++++++||+|+|||++|+.|++++.+.
T Consensus 538 ~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~ 605 (628)
T TIGR02316 538 VVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR 605 (628)
T ss_pred EEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC
Confidence 999998875432 23679999999999999995 559999999999999999999987654
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-81 Score=785.94 Aligned_cols=654 Identities=16% Similarity=0.133 Sum_probs=493.6
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCCCCccCCCccccccc
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLT 96 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (722)
+..++..+|.++++++.+. ..+++||++||++ |++.+++.++...+|.+ |+++|..+...... .+ ....++
T Consensus 86 ~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~~~~~~p~l-f~~~~~~~~~~~~~--~~----~~~~~~ 157 (1389)
T TIGR03443 86 LNITPELSFLQLYAKVSEEEKEGASDIGVPFDE-LSEHIQAAKKLERTPPL-FRLAFQDAPDNQQT--TY----STGSTT 157 (1389)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccCCCCCCcc-EEEEeecCCccccc--cc----ccCCcc
Confidence 3456677888888888877 6666999999999 99999988766666522 56544432211110 11 344678
Q ss_pred cHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCC-----CCCcC
Q 004952 97 NLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH-----GGTWL 168 (722)
Q Consensus 97 ~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~-----~~~w~ 168 (722)
||.+.+.+.++++...+ |+. ++|++.+++++.++|..+|+++...++.+..++ +...+.... ...|.
T Consensus 158 dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 232 (1389)
T TIGR03443 158 DLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDPTKDLDWS 232 (1389)
T ss_pred ceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhccccccCcC
Confidence 88888877777888888 988 999999999999999999999988888877654 222221111 11232
Q ss_pred CCCccchhhhcccCcccCCCCCCceEEEEecCCC-CCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH
Q 004952 169 PGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA 246 (722)
Q Consensus 169 ~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~ 246 (722)
.. .......+. .+++++||++|+++..... .....+++||+||+++++++|++|++. +++||+|+|+++|++++
T Consensus 233 ~~--~~~l~~~~~--~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~ 308 (1389)
T TIGR03443 233 GF--RGAIHDIFA--DNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDL 308 (1389)
T ss_pred cc--cCcHHHHHH--HHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHH
Confidence 11 011122233 3457899999998642210 011234899999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC-----CCcEEEEcCCCCCC
Q 004952 247 VIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDV 321 (722)
Q Consensus 247 vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 321 (722)
++++|||+|+|++|+|+||.+|.+++.+++++++++++++..... ............. ....+.+......
T Consensus 309 i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 384 (1389)
T TIGR03443 309 VVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAG---TLDQLVRDYIDKELELRTEIPALALQDDGSL- 384 (1389)
T ss_pred HHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEecccc---ccchhhhhhhhcccccccccceEEecccccc-
Confidence 999999999999999999999999999999999999999876421 0001111111000 0001111100000
Q ss_pred CCCCCCCCCC--HHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCE
Q 004952 322 GIPLREQDLS--WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (722)
Q Consensus 322 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~ 399 (722)
..+... ..+....... ...........++++|||+|||||||.||||+++|+++++.+.+....+++.++|+
T Consensus 385 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 458 (1389)
T TIGR03443 385 ----VGGSLEGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDK 458 (1389)
T ss_pred ----cccccccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 000000 0011100000 00001122346799999999999999999999999999999988888899999999
Q ss_pred EEEecCccccchhHHHHHHhhcCCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEE
Q 004952 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477 (722)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~ 477 (722)
++++++++|+.+++++|.+|+.|+++++++.. .++..+.+.|++++||++.++|++++.|.... ...+++||.++
T Consensus 459 ~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~ 535 (1389)
T TIGR03443 459 FTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAF 535 (1389)
T ss_pred EEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEE
Confidence 99999999999999999999999999998643 25678999999999999999999999987543 23478999999
Q ss_pred eecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCC----------cCccccccccCCCceEEEECCC--CCc
Q 004952 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDEC--GVP 545 (722)
Q Consensus 478 ~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~--~~~ 545 (722)
+|||++++....++....++++++|.||+||++++++...... .....++|+|+++++++|+|++ +++
T Consensus 536 ~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~ 615 (1389)
T TIGR03443 536 FVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQT 615 (1389)
T ss_pred EecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCc
Confidence 9999999998888877777889999999999986554322110 1124689999999999999964 578
Q ss_pred CCCCCCccceEEE-----ecccCCCccccccccccccceeccccC----------------------CCceecccCceEE
Q 004952 546 YPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY----------------------KGMCLRRHGDIIK 598 (722)
Q Consensus 546 ~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~----------------------~g~r~yrTGDl~~ 598 (722)
+|.|++ |||+| +.||++ +++.|+++|..+|+. ++.+||+|||+|+
T Consensus 616 ~~~G~~--GEL~i~G~~v~~GY~~------~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~ 687 (1389)
T TIGR03443 616 CGVGEV--GEIYVRAGGLAEGYLG------LPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGR 687 (1389)
T ss_pred CCCCCc--eEEEecccccchhcCC------ChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCcee
Confidence 999995 99998 356665 667888899766531 3468999999999
Q ss_pred EecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC-CC---------
Q 004952 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TS--------- 668 (722)
Q Consensus 599 ~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~-~~--------- 668 (722)
+++||+|+|+||.|||||++|+||+|+|||++|. +||.|.+++|++.++...+ +.+++|+++..+. ..
T Consensus 688 ~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~~~~~~~~~~~~~~~ 765 (1389)
T TIGR03443 688 YLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQDKSDELEEFKSEVDD 765 (1389)
T ss_pred EcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccCcccccccccccccc
Confidence 9999999999999999999999999999999995 9999999999998887666 8999999986321 10
Q ss_pred ----------------CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHH
Q 004952 669 ----------------QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 669 ----------------~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
..++++++|+++||.||+|. ++.+++||+|+||||||++|++.
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~ 825 (1389)
T TIGR03443 766 EESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFP 825 (1389)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCC
Confidence 13578999999999999994 66999999999999999999754
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-79 Score=704.22 Aligned_cols=578 Identities=23% Similarity=0.334 Sum_probs=458.1
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCe--eeccCCCC---CCCCCCcCCCCccchhhhcccCcccCCCCCCce
Q 004952 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK--CILDRTDK---SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (722)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~---~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (722)
.+|+.++++++++++.||..+.+.+ .|..++. ++++.... ..+..+||.++.+|.++++++++. .+.+|+++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l~~~~-~~~~~~~~ 106 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNV-EAGNGDKI 106 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHHHHhh-ccCCCCCE
Confidence 4678899999999999999999984 5777763 56532111 123579999999999999998864 12489999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 004952 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (722)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l 272 (722)
|+++.+. +.+..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++
T Consensus 107 Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l 184 (666)
T PLN02654 107 AIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184 (666)
T ss_pred EEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Confidence 9998543 122345899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---------CcEEEEcCCCCC--CCCC-CCCCCCCHHHHhcccC
Q 004952 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---------LKAIVLPAIGND--VGIP-LREQDLSWKDFLSSVD 340 (722)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 340 (722)
.+++++++++++|+++...++++.++....+..... ..++........ .... .......|+++.....
T Consensus 185 ~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (666)
T PLN02654 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP 264 (666)
T ss_pred HHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC
Confidence 999999999999999887766666554433322111 011111111000 0000 0112234555543211
Q ss_pred CCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHH-HHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHH
Q 004952 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (722)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (722)
...+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.++++|.++. +.++++
T Consensus 265 -----~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 265 -----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred -----CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 11223345779999999999999999999999999764 34445567889999999999999999987 567899
Q ss_pred hhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHh
Q 004952 419 FLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (722)
Q Consensus 419 L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 493 (722)
|+.|++++++++. +++..++++|++++||++.++|++++.|.+... ....++++||.++++||+++++..+|+.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999753 367899999999999999999999999988653 24457899999999999999999999988
Q ss_pred hccC--CcccccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccc
Q 004952 494 KAWY--NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 570 (722)
Q Consensus 494 ~~~~--~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~ 570 (722)
.++. +++.+.||+||+++..+...+ ..+..++++|+|++|++++|+|++|++++.|+. |||++..++.+.+..|+
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~--Gel~v~~~~p~~~~gy~ 497 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS--GYLCVKKSWPGAFRTLY 497 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCc--eEEEEcCCCchhhhhhc
Confidence 8753 689999999999875544333 224566889999999999999999999998874 99999543222222233
Q ss_pred -cccccccc-eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 571 -NADHEEVY-FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 571 -~~~~t~~~-f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.+... |... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 498 ~~~~~~~~~~~~~~---~g--~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d 571 (666)
T PLN02654 498 GDHERYETTYFKPF---AG--YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEH 571 (666)
T ss_pred CChHHHHHhhhhcC---CC--EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 34444433 3321 23 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+..| +.+++||+++++...+. ++|+++++++|+.+++|. ++++++||+|+|||++|+.|++++.++
T Consensus 572 ~~~g-e~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~ 641 (666)
T PLN02654 572 EVKG-QGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 641 (666)
T ss_pred CCCC-eEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence 8888 89999999998765543 378888899999999995 558999999999999999999998764
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=843.43 Aligned_cols=627 Identities=16% Similarity=0.160 Sum_probs=496.9
Q ss_pred HHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC-------CCccCC-Cccccc
Q 004952 24 EEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------PLYWFP-SLDQSK 94 (722)
Q Consensus 24 ~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~ 94 (722)
.++.++|+++++. ++.++||++||++ +++..+..+..++|+ +++++++..... ...... ......
T Consensus 3566 ~t~~~~L~~v~~~~~~~~~~q~~~l~~-i~~~~~~~~~~~LF~-----t~~v~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 3639 (4334)
T PRK05691 3566 CSVRQWLQGLLDSNMELREYEYLPLVA-IQECSELPKGQPLFD-----SLFVFENAPVEVSVLDRAQSLNASSDSGRTHT 3639 (4334)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCHHH-HHHHhcCCCCCCCcc-----EEEEeecCCcchhhhccccccccccccccccc
Confidence 4666666666665 6666999999999 998887666555554 445554432111 011001 112345
Q ss_pred cccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCCcCCCC
Q 004952 95 LTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTWLPGS 171 (722)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~w~~~~ 171 (722)
+++|++.+.. ++.+...+ |++ ++|++.+++++.++|.++|+++...++.+...+ +...+.......|+...
T Consensus 3640 ~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3713 (4334)
T PRK05691 3640 NFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPLLGEQERDFLLDGCNRSE 3713 (4334)
T ss_pred CCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCCCCHHHHHHHHHhhCCcc
Confidence 6677665433 33455566 887 999999999999999999999988887776664 33333333445677654
Q ss_pred ccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHH
Q 004952 172 VLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248 (722)
Q Consensus 172 ~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv 248 (722)
.......+++. ..|++++||++|+++.+. ++||+||+++++++|++|++. |++|++|+|++++|+++++
T Consensus 3714 ~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v 3785 (4334)
T PRK05691 3714 RDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLG 3785 (4334)
T ss_pred CCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 44444445544 356789999999999888 999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---CcEEEEcCCCCCCCCCC
Q 004952 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPL 325 (722)
Q Consensus 249 ~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 325 (722)
++|||+|+|++||||||++|.+|+.+|+++++++++|+++..... ...+..... ...+++
T Consensus 3786 ~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~----------- 3848 (4334)
T PRK05691 3786 MIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQ------ARALLDELGCANRPRLLV----------- 3848 (4334)
T ss_pred HHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccch------hhhhhcccccccccceee-----------
Confidence 999999999999999999999999999999999999998754211 111111110 011111
Q ss_pred CCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecC
Q 004952 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (722)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~ 405 (722)
+++..... .+...+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|+++++++
T Consensus 3849 ------~~~~~~~~----~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s 3918 (4334)
T PRK05691 3849 ------WEEVQAGE----VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTAS 3918 (4334)
T ss_pred ------eccccccc----ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecC
Confidence 01110000 01112223456899999999999999999999999999999999888999999999999999
Q ss_pred ccccchhHHHHHHhhcCCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCC
Q 004952 406 LGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS 483 (722)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l 483 (722)
++||.+++++|.+|+.|+++++++.. .++..+++.+++++||++.++|++++.++... ...+++||.+++|||++
T Consensus 3919 ~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l 3995 (4334)
T PRK05691 3919 QSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAM 3995 (4334)
T ss_pred CchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcC
Confidence 99999999999999999999998753 36788999999999999999999999987653 23478999999999999
Q ss_pred CcchHHHHHhhccCCcccccccccccccccccCCcC---CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE--
Q 004952 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-- 558 (722)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-- 558 (722)
++++.+.|.+..++++++|.||+|||++.++..... ......++|+|++|++++|+|++++++|.|.. |||+|
T Consensus 3996 ~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~--GEL~i~G 4073 (4334)
T PRK05691 3996 PPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAV--GELCVAG 4073 (4334)
T ss_pred CHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCc--eEEEEec
Confidence 999999888888889999999999999765443221 12234689999999999999999999999995 99998
Q ss_pred ---ecccCCCccccccccccccceecccc-CCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhcc
Q 004952 559 ---FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634 (722)
Q Consensus 559 ---~~~y~~~~~~~~~~~~t~~~f~~~p~-~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~ 634 (722)
+.||++ +++.|+++|..+|+ .+|.|||||||+|||++||+|+|+||+|+|||++|+||+++|||++|. .
T Consensus 4074 ~~v~~GY~~------~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~-~ 4146 (4334)
T PRK05691 4074 TGVGRGYVG------DPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLH-E 4146 (4334)
T ss_pred ccccccccC------CcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHH-h
Confidence 456666 67799999999997 468899999999999999999999999999999999999999999995 9
Q ss_pred CCCcceeEEEeecCCCCCceEEEEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 635 ~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+|+|.+|+|+...+ ..+ +.++||++...+... ..++++.+|+++||+||+|. ++.+++||+|+||||||++|++
T Consensus 4147 ~~~v~~a~v~~~~~-~~~-~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~ 4224 (4334)
T PRK05691 4147 QAEVREAAVAVQEG-VNG-KHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA 4224 (4334)
T ss_pred CCCccEEEEEEecC-CCC-cEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCC
Confidence 99999998876543 345 789999998764322 23679999999999999994 5689999999999999999987
Q ss_pred H
Q 004952 711 Q 711 (722)
Q Consensus 711 ~ 711 (722)
+
T Consensus 4225 ~ 4225 (4334)
T PRK05691 4225 L 4225 (4334)
T ss_pred C
Confidence 5
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-81 Score=780.22 Aligned_cols=629 Identities=19% Similarity=0.188 Sum_probs=487.8
Q ss_pred hhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC---CCCccCC-Cccccc
Q 004952 20 LEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG---PPLYWFP-SLDQSK 94 (722)
Q Consensus 20 ~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~ 94 (722)
..+..+|.++++++.+. ..+++||++||++ |++.++..+ ...++ |+++++++..... ....... ......
T Consensus 303 ~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1296)
T PRK10252 303 IAAQETLPELATRLAAQLKKMRRHQRYDAEQ-IVRDSGRAA--GDEPL--FGPVLNIKVFDYQLDFPGVQAQTHTLATGP 377 (1296)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCcc--CCCCc--eeEEEEeeecccccCcCCccceeeecCCCc
Confidence 34556777777777777 6666999999999 999997543 22334 5555655432211 1110000 001112
Q ss_pred cccHHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCCcCCC
Q 004952 95 LTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTWLPG 170 (722)
Q Consensus 95 ~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~w~~~ 170 (722)
.+|+++.+. ..++.+...+ |+. ++|++.+++++.++|..+|+++...++.+...+ +...+... ...|+..
T Consensus 378 ~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~-~~~~~~~ 451 (1296)
T PRK10252 378 VNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQ-LAQVNAT 451 (1296)
T ss_pred cCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHH-HHHhcCC
Confidence 346666554 2334566666 888 999999999999999999999987777766553 22221111 2334433
Q ss_pred CccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHH
Q 004952 171 SVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAV 247 (722)
Q Consensus 171 ~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~v 247 (722)
...... .++.. ..+++++||++|+++.+. .+||+||+++++++|++|.+. +++||+|+|+++++++++
T Consensus 452 ~~~~~~-~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i 522 (1296)
T PRK10252 452 AVEIPE-TTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLT 522 (1296)
T ss_pred CCCCCc-CCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 222111 11211 234578999999998877 999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCC
Q 004952 248 IIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327 (722)
Q Consensus 248 v~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (722)
+++|||+++|++|+|+||++|.+++.+++++++++++++++........ .+. ..++
T Consensus 523 ~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----------~~~-~~~~------------- 578 (1296)
T PRK10252 523 LALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----------VPD-LTSL------------- 578 (1296)
T ss_pred HHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----------CCC-ceee-------------
Confidence 9999999999999999999999999999999999999998753211100 000 0000
Q ss_pred CCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCcc
Q 004952 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407 (722)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (722)
.+........ ..+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++
T Consensus 579 ---~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 649 (1296)
T PRK10252 579 ---CYNAPLAPQG------AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCS 649 (1296)
T ss_pred ---eccccccccc------CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcc
Confidence 0000000000 0111223578999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhcCCEEEEecC--CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC--CCCccceeEEEeecCCC
Q 004952 408 WVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETS 483 (722)
Q Consensus 408 ~~~~~~~~~~~L~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~~Ge~l 483 (722)
|+.+++++|.+|++|+++++.+. ..++..++++|++++||++.++|++++.+++..... ...+++||.+++|||++
T Consensus 650 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 729 (1296)
T PRK10252 650 FDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEAL 729 (1296)
T ss_pred hhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCC
Confidence 99999999999999999999864 347788999999999999999999999988753222 23468999999999999
Q ss_pred CcchHHHHHhhccCCcccccccccccccccccCCcCC------cCccccccccCCCceEEEECCCCCcCCCCCCccceEE
Q 004952 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (722)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~ 557 (722)
++++.+.+.+.+ +++++|.||+||++++++...... .....++|+|++|++++|+|++++++|.|+. |||+
T Consensus 730 ~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~--Gel~ 806 (1296)
T PRK10252 730 PADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVA--GDLY 806 (1296)
T ss_pred CHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCc--eEEE
Confidence 999988887654 678999999999987554433221 2334689999999999999999999999996 9999
Q ss_pred E-----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 558 v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
| +.||++ +++.|+++|..+|+.+|.+||+|||+|++++||+++|+||+|+|||++|+||+|+|||++|.
T Consensus 807 i~g~~~~~GY~~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~ 880 (1296)
T PRK10252 807 LTGIQLAQGYLG------RPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQ 880 (1296)
T ss_pred ecccccchhhCC------CcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHH
Confidence 8 356665 66789999999998889999999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeec----CCCCC-ceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHH
Q 004952 633 QADESILETAAISVS----PAGGG-PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRR 706 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~----~~~~g-~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~ 706 (722)
.||+|.+|+|+... +...| ...+++||++..+...+.++|+++++++||.||+| .++.+++||+|+||||||+
T Consensus 881 -~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~ 959 (1296)
T PRK10252 881 -ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRK 959 (1296)
T ss_pred -hCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHH
Confidence 99999999887652 11122 24799999988766667789999999999999999 4668999999999999999
Q ss_pred HHHHH
Q 004952 707 VLRDQ 711 (722)
Q Consensus 707 ~L~~~ 711 (722)
+|++.
T Consensus 960 ~L~~~ 964 (1296)
T PRK10252 960 ALPLP 964 (1296)
T ss_pred hcCCC
Confidence 99764
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=701.70 Aligned_cols=602 Identities=27% Similarity=0.413 Sum_probs=475.5
Q ss_pred CccCCCccccccccHHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCC
Q 004952 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (722)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (722)
+.|.|.+.....+++.-+....+.. ++..+.+|+.+++++++++..||..+++...+.|..++..+++.. ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~ 76 (655)
T PRK03584 4 PLWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGR--RMP 76 (655)
T ss_pred CCCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCC--CCC
Confidence 3676666555667777665443321 333345778999999999999999999887778999999887642 234
Q ss_pred CCCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 004952 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (722)
Q Consensus 164 ~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~ 242 (722)
..+||.++.+|++++++++ .+|+++|+++.++. +..+++||+||.++++++|+.|++. +++||+|+++++|
T Consensus 77 ~~~wf~~~~~n~~~~~~~~-----~~~~~~Al~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n 148 (655)
T PRK03584 77 GARWFPGARLNYAENLLRH-----RRDDRPAIIFRGED---GPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPN 148 (655)
T ss_pred CCeeCCCCEeeHHHHhhcc-----CCCCCeEEEEECCC---CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 5799999999999999863 46999999987642 3346899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHh---hcCCC--cEEEEcCC
Q 004952 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAAPL--KAIVLPAI 317 (722)
Q Consensus 243 s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~ 317 (722)
++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...++++.++....+. ...+. .++++...
T Consensus 149 ~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (655)
T PRK03584 149 IPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYL 228 (655)
T ss_pred CHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecC
Confidence 99999999999999999999999999999999999999999999987766666555444432 22222 33444322
Q ss_pred CCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHH-HHHHHhhhhcCCCC
Q 004952 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKV 396 (722)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~-~~~~~~~~~~~~~~ 396 (722)
..............|++++..... .........+++++||+|||||||.||||+++|++++ +.+......+++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 304 (655)
T PRK03584 229 GPAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGP 304 (655)
T ss_pred CCcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCC
Confidence 111111112234567777652211 1122334567999999999999999999999999875 44555566788999
Q ss_pred CCEEEEecCccccchhHHHHHHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCcc
Q 004952 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWT 471 (722)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~ 471 (722)
+|+++++++++|+++.+ ++++|+.|++++++++. .++..++++|+++++|++.++|++++.|.+... ....+++
T Consensus 305 ~d~~~~~~~~~~~~~~~-~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~ 383 (655)
T PRK03584 305 GDRFFWYTTCGWMMWNW-LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLS 383 (655)
T ss_pred CCEEEEcCCchHHhHHH-HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChh
Confidence 99999999999986543 67899999999998753 367899999999999999999999999987532 2346789
Q ss_pred ceeEEEeecCCCCcchHHHHHhhcc-CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCC
Q 004952 472 KIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (722)
Q Consensus 472 ~Lr~i~~~Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (722)
+||.+++|||++++++.+++.+.++ +.++++.||+||++..+.......+...+++|.|++|++++|+|++|+++ .|+
T Consensus 384 sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~ 462 (655)
T PRK03584 384 ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGE 462 (655)
T ss_pred heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCC
Confidence 9999999999999999999988763 57899999999987654443333445668899999999999999999999 677
Q ss_pred CccceEEEecccCCCcccccc-cccc---ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHH
Q 004952 551 PCVGEVGLFPLYLGASDRLLN-ADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (722)
Q Consensus 551 ~giGel~v~~~y~~~~~~~~~-~~~t---~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (722)
. |||+|...+.+...+|++ ++.+ ..+|... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.|
T Consensus 463 ~--GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~---~g--~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~E 535 (655)
T PRK03584 463 V--GELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF---PG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAE 535 (655)
T ss_pred c--eEEEEccCCCCCcceeeCCCccchHHHhhhccC---CC--EeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHH
Confidence 4 999995422222222333 2222 1233322 23 8999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCch
Q 004952 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNK 702 (722)
Q Consensus 627 IE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GK 702 (722)
||++|. +||+|.+|+|++++++..+ +.+++||+++++...+. ++|+++++++|+.+++|. ++++++||+|+|||
T Consensus 536 IE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK 613 (655)
T PRK03584 536 IYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGK 613 (655)
T ss_pred HHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCcc
Confidence 999995 9999999999999998777 99999999988655443 578999999999999995 55999999999999
Q ss_pred hhHHHHHHHHhhh
Q 004952 703 LLRRVLRDQIKHE 715 (722)
Q Consensus 703 vdR~~L~~~~~~~ 715 (722)
|+|+.|++++.+.
T Consensus 614 i~r~~lr~~~~~~ 626 (655)
T PRK03584 614 KVELPVKKLLHGR 626 (655)
T ss_pred chHHHHHHHHcCC
Confidence 9999999987654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=699.71 Aligned_cols=576 Identities=26% Similarity=0.419 Sum_probs=464.9
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
.+|+.++++++++++.||..+.+. ...|.+++.++++.. ..+..+||.++.+|++++++++++ +.+||++|+++.
T Consensus 5 ~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 79 (625)
T TIGR02188 5 EQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWS--FPPFYKWFVGGELNVSYNCVDRHL--EARPDKVAIIWE 79 (625)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCC--CCCCCeeCCCCEEEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467889999999999999999987 457999999987643 234689999999999999998765 679999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
++ +.+..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 80 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~ 157 (625)
T TIGR02188 80 GD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRIN 157 (625)
T ss_pred cC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHH
Confidence 54 123456899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhh---cCC---CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCc
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (722)
+++++++|+++...++++.++....+.+ ..+ ..++++......... .......|+++...... ...+.
T Consensus 158 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~ 231 (625)
T TIGR02188 158 DAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPW-VEGRDVWWHDLMAKASA-----YCEPE 231 (625)
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCc-cccccccHHHHHhhcCC-----CCCce
Confidence 9999999999887766665554443332 222 123333222111000 11123456666544221 12233
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEec
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~ 429 (722)
...+++++||+|||||||.||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|++|+++++++
T Consensus 232 ~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~ 311 (625)
T TIGR02188 232 PMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFE 311 (625)
T ss_pred ecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEEC
Confidence 45779999999999999999999999999765433 34445788999999999999999886 56889999999999987
Q ss_pred CC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhcc--CCcccc
Q 004952 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIE 502 (722)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~--~~~l~n 502 (722)
+. .++..++++|+++++|++.++|++++.|.+.... ...++++||.+++|||++++++.+++.+.++ +++++|
T Consensus 312 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~ 391 (625)
T TIGR02188 312 GTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVD 391 (625)
T ss_pred CCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEe
Confidence 53 3678999999999999999999999999876432 3456899999999999999999999988765 378999
Q ss_pred cccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCC-CCCCccceEEEecccCCCcccccc-ccccccce
Q 004952 503 SCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLFPLYLGASDRLLN-ADHEEVYF 579 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p-~G~~giGel~v~~~y~~~~~~~~~-~~~t~~~f 579 (722)
.||+||+++.++..... .+...+++|+|++|++++|+|++|++++ .|+. |||++...+.+....|++ ++.+...|
T Consensus 392 ~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~--GeL~v~~p~p~~~~gy~~~~~~~~~~~ 469 (625)
T TIGR02188 392 TWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG--GYLVIKQPWPGMLRTIYGDHERFVDTY 469 (625)
T ss_pred cccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCe--EEEEEccCCCcccccccCChHHHHHHH
Confidence 99999998765443222 2345678999999999999999999999 8885 999995433222223333 33333322
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
.. ..+| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+++|
T Consensus 470 ~~--~~~g--~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~~a~ 543 (625)
T TIGR02188 470 FS--PFPG--YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAIYAF 543 (625)
T ss_pred hc--cCCC--EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEE
Confidence 11 1123 9999999999999999999999999999999999999999995 9999999999999998888 999999
Q ss_pred EEecCCCCCC---HHHHHHHHHHHHHhhcCCCe-eecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 660 VVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLF-KVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 660 vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~-~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
|+++++...+ .++|+++++++|+.+++|.. +++++||+|+|||++|+.|++++.++
T Consensus 544 vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 544 VTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 9998875544 26799999999999999954 58999999999999999999998765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-78 Score=696.18 Aligned_cols=603 Identities=26% Similarity=0.379 Sum_probs=474.0
Q ss_pred CCCccCCCccccccccHHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCC
Q 004952 82 PPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKS 161 (722)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 161 (722)
++..|.|........++..+.+..+.. |...+.+|+.+++++++++..||..+++...+.|..++.++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~-- 75 (652)
T TIGR01217 3 PQPLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT-- 75 (652)
T ss_pred CCCCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC--
Confidence 345787776666667776665444322 3334467899999999999999999999877899999999986522
Q ss_pred CCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEc
Q 004952 162 KHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDM 240 (722)
Q Consensus 162 ~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~ 240 (722)
.+..+||.++.+|+++++++. +++++|+++.++. +..+++||+||.++++++|+.|++. +++||+|++++
T Consensus 76 ~~~~~wf~~~~~n~~~~~~~~------~~~~~a~~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~ 146 (652)
T TIGR01217 76 MPGAQWFPGARLNYAENLLRA------AGTEPALLYVDET---HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYL 146 (652)
T ss_pred CCCCEECCCCeeeHHHHHhcc------CCCCeEEEEECCC---CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 345789999999999999873 3689999987652 3456899999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhh---cCC--CcEEEEc
Q 004952 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP--LKAIVLP 315 (722)
Q Consensus 241 ~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~ 315 (722)
+|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...++++.++....+.+ ..+ ..++++.
T Consensus 147 ~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (652)
T TIGR01217 147 PNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIP 226 (652)
T ss_pred CCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEe
Confidence 99999999999999999999999999999999999999999999999887777666655444432 233 2234443
Q ss_pred CCCCCC-CCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHH-HHHHHhhhhcC
Q 004952 316 AIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHID 393 (722)
Q Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~-~~~~~~~~~~~ 393 (722)
...... ......+...|+++...... .........+++++||+|||||||.||||+++|++++ +........++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~ 302 (652)
T TIGR01217 227 YLGPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCD 302 (652)
T ss_pred CCCCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccC
Confidence 211100 00001234567777654211 1112234567999999999999999999999999964 44445555688
Q ss_pred CCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCC
Q 004952 394 LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468 (722)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~ 468 (722)
++++|+++++++++|+++.+ ++.+|+.|++++++++. +++..+++++++++||++.++|++++.+..... ....
T Consensus 303 ~~~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~ 381 (652)
T TIGR01217 303 LGPGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381 (652)
T ss_pred CCCCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccC
Confidence 99999999999999986544 56899999999999753 356789999999999999999998888866421 2346
Q ss_pred CccceeEEEeecCCCCcchHHHHHhhcc-CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCC
Q 004952 469 DWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547 (722)
Q Consensus 469 ~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p 547 (722)
++++||.+++|||+++++..+++.+.++ +..+.+.||+||+++++.......+...+++|.|.+|++++|+|++|++++
T Consensus 382 ~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~ 461 (652)
T TIGR01217 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT 461 (652)
T ss_pred ChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC
Confidence 7899999999999999999999887664 356789999999865444333334445678999999999999999999995
Q ss_pred CCCCccceEEEecccCCCcccccc-ccccc---cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeec
Q 004952 548 DDQPCVGEVGLFPLYLGASDRLLN-ADHEE---VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623 (722)
Q Consensus 548 ~G~~giGel~v~~~y~~~~~~~~~-~~~t~---~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~ 623 (722)
|+. |||++...+.+.+..|++ ++.+. .+|... ..||+|||+|++|+||+|+|+||+||+||++|+||+
T Consensus 462 -g~~--GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~-----~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~ 533 (652)
T TIGR01217 462 -GEV--GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY-----PGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMG 533 (652)
T ss_pred -CCc--cEEEEecCCCccccceeCCCccchhHHhhhcCC-----CCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcC
Confidence 774 999995432222223333 33222 333321 228999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhcCCC-eeecCCCCCCC
Q 004952 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPL-FKVVPEFPRTA 699 (722)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~ 699 (722)
|.|||++|. +||+|.+|+|++++++..| +.++|||+++++...+. ++|+++++++|+.+++|. ++++++||+|+
T Consensus 534 p~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~ 611 (652)
T TIGR01217 534 SAEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTL 611 (652)
T ss_pred HHHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCC
Confidence 999999995 9999999999999998888 99999999988765543 578999999999999995 55899999999
Q ss_pred CchhhHHHHHHHHhhh
Q 004952 700 SNKLLRRVLRDQIKHE 715 (722)
Q Consensus 700 ~GKvdR~~L~~~~~~~ 715 (722)
||||+|+.|++++.+.
T Consensus 612 sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 612 TGKRVEVAVKRVLQGT 627 (652)
T ss_pred CccChHHHHHHHHcCC
Confidence 9999999999987544
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=690.62 Aligned_cols=574 Identities=27% Similarity=0.397 Sum_probs=457.9
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
.+|..+.+++++++..||..+.+. ..|.+++.++++. ..+..+||.++..|.++++++++. +++||++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 89 (637)
T PRK00174 17 EQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHL--KTRGDKVAIIWE 89 (637)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 456888899999999999999877 4688888888764 345789999999999999998765 678999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
++. ++..+++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 90 ~~~--~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 167 (637)
T PRK00174 90 GDD--PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRII 167 (637)
T ss_pred CCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHH
Confidence 541 12345899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhh---cCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCcc
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (722)
+++++++|+++...+.++.++....+.. ..+. .++++......... .......|+++...... ..+...
T Consensus 168 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~ 241 (637)
T PRK00174 168 DAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGASD-----ECEPEP 241 (637)
T ss_pred hcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcCC-----CCCccc
Confidence 9999999998876555554444433322 2221 23333221111100 01123456666543221 122334
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~ 430 (722)
..+++++||+|||||||.||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|++|++++++++
T Consensus 242 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 321 (637)
T PRK00174 242 MDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEG 321 (637)
T ss_pred cCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECC
Confidence 5678999999999999999999999999865443 34445788999999999999999887 578899999999999875
Q ss_pred C---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhcc--CCccccc
Q 004952 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIES 503 (722)
Q Consensus 431 ~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~--~~~l~n~ 503 (722)
. .++..+++.|++++||++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.++ .++++|.
T Consensus 322 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~ 401 (637)
T PRK00174 322 VPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDT 401 (637)
T ss_pred CCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEec
Confidence 3 3678899999999999999999999999876432 3456889999999999999999998887764 3789999
Q ss_pred ccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccc-cccccccceec
Q 004952 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEEVYFRG 581 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~-~~~~t~~~f~~ 581 (722)
||+||++..++..... .....+++|+|++|++++|+|++|+++|.|+. |||++...+.+....|+ +++.+.+.|-
T Consensus 402 YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~gy~~~~~~~~~~~~- 478 (637)
T PRK00174 402 WWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMRTIYGDHERFVKTYF- 478 (637)
T ss_pred ccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccccccCCHHHHHHhhh-
Confidence 9999998755433221 23345789999999999999999999999985 99999532111112222 3333332221
Q ss_pred cccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEE
Q 004952 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661 (722)
Q Consensus 582 ~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv 661 (722)
....+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++||+
T Consensus 479 ---~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a~vv 553 (637)
T PRK00174 479 ---STFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYAFVT 553 (637)
T ss_pred ---cCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEE
Confidence 112239999999999999999999999999999999999999999995 9999999999999998888 89999999
Q ss_pred ecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 662 LKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 662 ~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+.++...+ .++|+++++++|+.+++|. ++++++||+|+|||++|++|++++.+.
T Consensus 554 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 554 LKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred ECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 98865544 4689999999999999995 558999999999999999999987655
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=829.66 Aligned_cols=639 Identities=15% Similarity=0.161 Sum_probs=506.5
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC-----CCCc--cCCC
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG-----PPLY--WFPS 89 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~ 89 (722)
+..++..+|.++++++++. ..+++||++||++ |++.|++++....+|+ ||+++++++.... .... ....
T Consensus 2025 v~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2101 (4334)
T PRK05691 2025 CQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDH-LVEALQPPRSAAYNPL--FQVMCNVQRWEFQQSRQLAGMTVEYLVN 2101 (4334)
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccccCCCCc--eEEEEEeeccccccccCCCCceeEeecc
Confidence 3445667788888888877 6666999999999 9999999988888888 8898888753211 1111 1122
Q ss_pred ccccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCC
Q 004952 90 LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGT 166 (722)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~ 166 (722)
....++|||.+.+.+.++.+...+ |+. ++|++++++++.++|.++|+++...++.+...+ +...+.......
T Consensus 2102 ~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 2176 (4334)
T PRK05691 2102 DARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQQQLLDS 2176 (4334)
T ss_pred cCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHHHHHHHH
Confidence 234578898888777777777777 988 999999999999999999999987777766553 333222222223
Q ss_pred cCCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004952 167 WLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (722)
Q Consensus 167 w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s 243 (722)
|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+++++||
T Consensus 2177 ~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~~~s 2248 (4334)
T PRK05691 2177 LAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVRVGLALERS 2248 (4334)
T ss_pred hCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Confidence 3333222222233433 245689999999999877 999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCC
Q 004952 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (722)
Q Consensus 244 ~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (722)
+++++++|||+|+|++|||+||.+|.+++.+++++++++++|++.........++ . ....+.+...
T Consensus 2249 ~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~------~--~~~~~~~~~~------ 2314 (4334)
T PRK05691 2249 LEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELP------A--GVARWCLEDD------ 2314 (4334)
T ss_pred HHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcccc------c--cceeEEeccc------
Confidence 9999999999999999999999999999999999999999999875321110000 0 0001111000
Q ss_pred CCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEe
Q 004952 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403 (722)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~ 403 (722)
... ..... .........++++|||+|||||||+||||+++|+++++.+.+....++++++|+++++
T Consensus 2315 --------~~~-~~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~ 2380 (4334)
T PRK05691 2315 --------AAA-LAAYS-----DAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHF 2380 (4334)
T ss_pred --------hhh-hhcCC-----CCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcccEEEEe
Confidence 000 00000 0111122357899999999999999999999999999999988889999999999999
Q ss_pred cCccccchhHHHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCC
Q 004952 404 TNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (722)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~ 482 (722)
++++|+.+++++|.+|++|+++++.+. ..++..+.++|++++||++.++|++++.|.+.... .....+||.+++|||+
T Consensus 2381 ~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr~i~~gGe~ 2459 (4334)
T PRK05691 2381 YSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVRMCITGGEA 2459 (4334)
T ss_pred cCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCceEEEEcccc
Confidence 999999999999999999999999764 34778999999999999999999999999875422 2345689999999999
Q ss_pred CCcchHHHHHhhccCCcccccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
+++++.+++...++...++|.||+||++++.+..... ......++|+|++++.++|+|++++++|.|++ |||+|
T Consensus 2460 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~--GEL~i 2537 (4334)
T PRK05691 2460 LTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGAT--GELYV 2537 (4334)
T ss_pred CCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCc--eEEEe
Confidence 9999999998887777899999999998654332211 11233579999999999999999999999996 99998
Q ss_pred -----ecccCCCccccccccccccceeccccC-CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 559 -----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 559 -----~~~y~~~~~~~~~~~~t~~~f~~~p~~-~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
+.||++ +++.|+++|..+|+. .|.|||+|||+|++++||+++|+||+|+|||++|+||+|+|||++|.
T Consensus 2538 ~G~~v~~GY~~------~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~ 2611 (4334)
T PRK05691 2538 GGAGLAQGYHD------RPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLL 2611 (4334)
T ss_pred cccccCccccC------ChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHH
Confidence 456665 667899999999875 47789999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCC------CCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGF------TSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLR 705 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~------~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR 705 (722)
+||+|.+|+|++..++ .+ +.+++|++..... ....++++++|+++||.||+| .++.+++||+|+|||+||
T Consensus 2612 -~~p~V~~a~V~~~~~~-~~-~~lva~vv~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~v~~lP~t~~GKidr 2688 (4334)
T PRK05691 2612 -EHPAVREAVVLALDTP-SG-KQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLDR 2688 (4334)
T ss_pred -hCCCcceEEEEEeeCC-CC-cEEEEEEEecccccccccccccHHHHHHHHHhhCccccCChhheeecccCCCCCCcccH
Confidence 9999999999988543 44 7899999875321 223478999999999999999 566999999999999999
Q ss_pred HHHHHHH
Q 004952 706 RVLRDQI 712 (722)
Q Consensus 706 ~~L~~~~ 712 (722)
++|++..
T Consensus 2689 ~~L~~~~ 2695 (4334)
T PRK05691 2689 RALPAPD 2695 (4334)
T ss_pred HhhcCcc
Confidence 9998653
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-77 Score=687.40 Aligned_cols=573 Identities=21% Similarity=0.319 Sum_probs=456.9
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
.+|+.+++++++++..||..+++. ..|.+++.++++.. ..+..+||.++.+|.++++++++. +.+|+++|+++.
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~A~~~~ 75 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYS--NPPFARWFVGGRTNLCHNAVDRHL--AKRPEQLALIAV 75 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCC--CCCcCccCCCcEeeHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467889999999999999999996 47999999987642 235578999999999999998765 678999999985
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
+. +.+..+.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 76 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 76 ST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred cC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 42 112345899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhh---cC---CCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCc
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (722)
+++++++|+++...++++.++....+.+ .. ...++++....... .........+.++...... ...+..
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 228 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG----ARVPVE 228 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC----CCCCce
Confidence 9999999998876666666554443322 11 22344443211100 0111223456665443221 111222
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHH-HHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEec
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~ 429 (722)
...+++++|++|||||||.||||+++|++++... ......+++.++|++++.++++|..+. +.++.+|+.|+++++++
T Consensus 229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 308 (629)
T PRK10524 229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE 308 (629)
T ss_pred eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence 3467899999999999999999999999975433 334456788999999999999999886 67889999999999987
Q ss_pred CC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+|+.+.+ +++++|.|
T Consensus 309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y 387 (629)
T PRK10524 309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNY 387 (629)
T ss_pred CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEecc
Confidence 53 357789999999999999999999999987543 2345689999999999999999999888765 57899999
Q ss_pred cccccccccccCCc---CCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEec----ccCCCccccccccccc
Q 004952 505 GGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFP----LYLGASDRLLNADHEE 576 (722)
Q Consensus 505 G~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~----~y~~~~~~~~~~~~t~ 576 (722)
|+||++..++.... ..+...+++|+|++|++++|+|+ +|+++|.|+. |||++.. +++.+ ++.+++.+.
T Consensus 388 G~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~~--~~~~~~~~~ 463 (629)
T PRK10524 388 WQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQT--VWGDDDRFV 463 (629)
T ss_pred ccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcCC--ccCChHHHH
Confidence 99999843332221 12344578999999999999998 9999999985 9999943 34331 222333222
Q ss_pred -cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 577 -VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 577 -~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
.+|... +.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.
T Consensus 464 ~~~~~~~----~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~~ 537 (629)
T PRK10524 464 KTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-QV 537 (629)
T ss_pred HhhhccC----CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-eE
Confidence 233211 3359999999999999999999999999999999999999999995 9999999999999998887 89
Q ss_pred EEEEEEecCCCCCC--------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 656 LVIFVVLKKGFTSQ--------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 656 l~a~vv~~~~~~~~--------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+++||+++++...+ .++|+++++++|+.++.|. ++++++||+|+|||++|+.|++++.++
T Consensus 538 ~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 606 (629)
T PRK10524 538 AVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR 606 (629)
T ss_pred EEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 99999998754322 3678999999999999995 558999999999999999999987654
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-77 Score=640.22 Aligned_cols=583 Identities=32% Similarity=0.459 Sum_probs=483.6
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCce
Q 004952 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (722)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (722)
|.....+|..|++.++++++.||...++.+....... .............+|+.+...|.+++|++++.... .++.+
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~-~~~~~ 82 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWP--RCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEK-GGDKV 82 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCcc--ccccccccCCCCccccccchhhhhHhhhhhhhhhc-CCCCc
Confidence 5556678899999999999999999999864333332 22222234456789999999999999999976445 79999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 004952 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (722)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l 272 (722)
|+++.+..+ +....+||.||.+++.++|..|... +++||+|++++|+.+++++++|||.++|++.+++...+++..+
T Consensus 83 a~~~~~~~~--~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l 160 (626)
T KOG1175|consen 83 AIIFEGNEG--GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKEL 160 (626)
T ss_pred EEEEEecCC--CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHH
Confidence 999986643 3334499999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCcc
Q 004952 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (722)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (722)
..+++++++++|+|.+...++++.++......+................-......+..|.+.+..... ..++..
T Consensus 161 ~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~ 235 (626)
T KOG1175|consen 161 LDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVP 235 (626)
T ss_pred HHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCcee
Confidence 999999999999999999999999888777766543322111110000001111235667777665543 334778
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChH-HHHHHHHhhhhcCCCCCCEEEEecCccccchhHH-HHHHhhcCCEEEEecC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG 430 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~lv~~~~ 430 (722)
.+.+|+.+|+|||||||.|||+.+++.+ ++..+......++++++|++.+++.++|+.+.+. .+++|++|+|++++++
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 8899999999999999999999999987 4666666777899999999999999999999955 6789999999999987
Q ss_pred CC-ChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccccc
Q 004952 431 SP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (722)
Q Consensus 431 ~~-~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (722)
.+ ++..+++.+.+++||++++.|++++.|...... ..+++++||++.++||++.++..+|+.+.+...+|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 76 888999999999999999999999988776443 344457899999999999999999999887655799999999
Q ss_pred ccccccccCCcCC-cCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccC-CCccccccc-c-ccccceeccc
Q 004952 508 ELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNA-D-HEEVYFRGMP 583 (722)
Q Consensus 508 E~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~-~~~~~~~~~-~-~t~~~f~~~p 583 (722)
|+|..++...... +..++++|.|.+++.+.|+|++|++++.+. |.|+|++.+..+ +.+..++++ + ....||.++|
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 9998887777766 889999999999999999999999999875 569999977666 555555544 3 3455666555
Q ss_pred cCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEec
Q 004952 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~ 663 (722)
. +|.|||.+++|+||+++++||.||+||++|+|+++.|||++|. +||.|.|++||+.+++..| +.++|||+++
T Consensus 475 g-----~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~ 547 (626)
T KOG1175|consen 475 G-----YYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFVVLK 547 (626)
T ss_pred c-----eEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEEEEc
Confidence 2 8999999999999999999999999999999999999999995 9999999999999999988 9999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCC----ee-ecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 664 KGFTSQPDKLKMIFSKAIQSKLNPL----FK-VVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 664 ~~~~~~~~~l~~~l~~~l~~~~~p~----~~-~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++. .+.++|++.|+++++..+.|. .+ +++.||+|.|||+.||+|++.+.++
T Consensus 548 ~g~-~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 548 SGS-HDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred CCC-CChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 984 445777777777766655553 33 8999999999999999999998876
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-75 Score=635.22 Aligned_cols=496 Identities=27% Similarity=0.298 Sum_probs=419.8
Q ss_pred CCCCc-eEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh---cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 188 KEDNT-VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 188 ~~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~---v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
..+++ +++++.... .+.+||+|+..++.++|.+|.++ +++||+|++++||+++++.++|||+.+|+++.|+
T Consensus 28 ~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~ 102 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL 102 (537)
T ss_pred ccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence 34444 777776620 13999999999999999999975 7889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCC-HHHHhcccCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYH 342 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (722)
+|.+.+.++.+.+++++++++|++.... +...........+++++................. +.++......
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP- 175 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC-
Confidence 9999999999999999999999998543 3343444444455555544311111111111111 3332222211
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
.. ......+|++.++|||||||.||||++||++++...........+...++.++..|+.|..|++.++.++++|
T Consensus 176 ----~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~ 250 (537)
T KOG1176|consen 176 ----DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG 250 (537)
T ss_pred ----cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence 11 3455679999999999999999999999999988877666667777899999999999999998888877777
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
++.++....++++.+++.|++|+||+++++|.++..|++.+.....+++++|.+.+||.+++++..+.+.++++...+.+
T Consensus 251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q 330 (537)
T KOG1176|consen 251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ 330 (537)
T ss_pred CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEE
Confidence 77777776779999999999999999999999999999987677789999999999999999999999999998789999
Q ss_pred cccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCcccccccccccc
Q 004952 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (722)
.||+||+++..+.+.......++++|+++++.+..|.++.|+.+|+++. ||||+ ..||++ |++.|++
T Consensus 331 ~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkGY~~------NpeaT~~ 402 (537)
T KOG1176|consen 331 GYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKGYLK------NPEATKE 402 (537)
T ss_pred eeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchhhcC------ChHHHHh
Confidence 9999999976555544333578999999999999999999999999996 99999 356655 7788988
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|..+ .||+|||+|++|+||+|++.+|++|+||.+|+.|+|.|||++|+ .||.|.||+|++++|+..| +.++
T Consensus 403 ~~~~~------GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~ 474 (537)
T KOG1176|consen 403 AFDDD------GWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPA 474 (537)
T ss_pred hcccC------CccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-Ccce
Confidence 88854 29999999999999999999999999999999999999999996 9999999999999999999 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
||||.++|...++++++++++++|+.|+.| ..+++++||+|+||||.|+.|++.+.+..
T Consensus 475 A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~ 534 (537)
T KOG1176|consen 475 AFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG 534 (537)
T ss_pred EEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence 999999988999999999999999999999 56699999999999999999999987753
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-73 Score=571.44 Aligned_cols=503 Identities=20% Similarity=0.239 Sum_probs=424.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
+++.||+.|+++..++ .++||+|+.+.+.++|+.|.+. +++||||++..||+.+|+.++|||.++|.+.++++
T Consensus 60 t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~N 133 (596)
T KOG1177|consen 60 TERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLN 133 (596)
T ss_pred hhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccC
Confidence 4688999999987764 2799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc----------------CCCcEEEEcCCCCCCCCCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----------------APLKAIVLPAIGNDVGIPLREQ 328 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 328 (722)
|+|+.+++++.|+..+++++|+...+. .-...+.+.+. ++....++-..+.. .-.+
T Consensus 134 P~Yq~~elr~~L~k~~~k~l~~p~~~k----~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~----~~~G 205 (596)
T KOG1177|consen 134 PAYQSEELRYVLKKVGCKALFAPPQFK----TQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH----PLPG 205 (596)
T ss_pred cccccHHHHHHHhhcCeEEEEccchhh----hchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC----cCCC
Confidence 999999999999999999999986431 11122222221 12222222222111 1246
Q ss_pred CCCHHHHhcccCCCCC-CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCcc
Q 004952 329 DLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407 (722)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (722)
...++|++...+.... ....-.....|||++.|.|||||||.|||+.+||-|++|+......++++...+|++...|+.
T Consensus 206 a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~ 285 (596)
T KOG1177|consen 206 AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLY 285 (596)
T ss_pred ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchH
Confidence 6778888776654111 111122345689999999999999999999999999999999999999999999999999999
Q ss_pred ccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcc
Q 004952 408 WVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (722)
Q Consensus 408 ~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~ 486 (722)
|.++. ..++.+|+.|+|+|++...+++...++.|.++++|+++.+|+|+..|++.......+++++|.++.||+++|++
T Consensus 286 H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~e 365 (596)
T KOG1177|consen 286 HCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPE 365 (596)
T ss_pred HHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHH
Confidence 99995 77889999999999999899999999999999999999999999999999888899999999999999999999
Q ss_pred hHHHHHhhccCCcccccccccccccccccCCcCC--cCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----e
Q 004952 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----F 559 (722)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~ 559 (722)
+.+.+.....-..+...||.||++...+.....+ .....++|..+++.+..|+|.+|.++|.|++ |||++ .
T Consensus 366 Llk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tM 443 (596)
T KOG1177|consen 366 LLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIRGYSTM 443 (596)
T ss_pred HHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEEechhh
Confidence 9988877543234788999999996544443322 2344689999999999999999999999997 99998 3
Q ss_pred cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcc
Q 004952 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (722)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (722)
.+||+ +++.|.+... .+|||+|||+|++|++|+++++||.+|+|+.+|.+|+|.|||+.|. +||.|.
T Consensus 444 l~Ywg------~~~kT~eti~------~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~hp~V~ 510 (596)
T KOG1177|consen 444 LGYWG------EEEKTKETIG------NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KHPLVK 510 (596)
T ss_pred eeecC------Ccccchhhcc------cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hCCCee
Confidence 45665 3344443332 4679999999999999999999999999999999999999999996 999999
Q ss_pred eeEEEeecCCCCCceEEEEEEEecCCCC--CCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 640 ETAAISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 640 ~~~vv~~~~~~~g~~~l~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++.||+++|+..| +.+||+|-++.+.. .+.++|+++++.+|..+.+|+ ++++++||+|.+|||.|-.++++++.++
T Consensus 511 ~a~VVGV~D~R~G-E~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l 589 (596)
T KOG1177|consen 511 EAHVVGVPDERLG-EEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL 589 (596)
T ss_pred eEEEEccCCCccc-ceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence 9999999999999 99999999998754 578999999999999999995 5599999999999999999999999876
Q ss_pred hh
Q 004952 717 SV 718 (722)
Q Consensus 717 ~~ 718 (722)
.-
T Consensus 590 ~l 591 (596)
T KOG1177|consen 590 GL 591 (596)
T ss_pred ce
Confidence 54
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-71 Score=625.55 Aligned_cols=482 Identities=21% Similarity=0.226 Sum_probs=398.7
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+. ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 58 AARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred HHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 3478999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
++.++.+++.+++++++++++|+++.... ....+.........++...... .....+...++++......
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 199 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDD--EPSGSTDETLDDLIAGSST-- 199 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCcc--ccCCcCcccHHHHhcCCCC--
Confidence 99999999999999999999999875421 1111111111111111111000 0111244567777654322
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
...+..++++++++|||||||.||||+++|+++.+.+......+++.++++++...|++|..++..++.++..|+
T Consensus 200 -----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~ 274 (549)
T PRK07788 200 -----APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGS 274 (549)
T ss_pred -----CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCC
Confidence 111234578899999999999999999999999988887777888999999999999999999887888999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
++++.. ..++..+++.+++++||++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.+ +++++
T Consensus 275 ~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~ 352 (549)
T PRK07788 275 TVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLY 352 (549)
T ss_pred EEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-Cccce
Confidence 999874 56888999999999999999999999999887543 455688999999999999999999988776 46899
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEec-----ccCCCccccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFP-----LYLGASDRLLNADHEE 576 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~-----~y~~~~~~~~~~~~t~ 576 (722)
|.||+||++.++...........+++|+|+++++++|+|++++++|.|+. |||++.. ||++. +. .
T Consensus 353 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~~------~~-~- 422 (549)
T PRK07788 353 NLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFEGYTDG------RD-K- 422 (549)
T ss_pred eccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCccccccCC------Cc-c-
Confidence 99999999865443332223345789999999999999999999999985 9999943 44432 11 1
Q ss_pred cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 577 ~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
..+ ..||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. +||+|.+|+|++.+++..| +.+
T Consensus 423 ~~~--------~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~ 492 (549)
T PRK07788 423 QII--------DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG-QRL 492 (549)
T ss_pred ccc--------CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-cEE
Confidence 111 239999999999999999999999999999999999999999995 9999999999999998877 899
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHH
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
++||+++++...+.++++++++++|+.|++|. ++++++||+|+|||++|++|+++
T Consensus 493 ~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 493 RAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999988777788999999999999999995 55899999999999999999863
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-70 Score=615.86 Aligned_cols=490 Identities=26% Similarity=0.291 Sum_probs=406.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+++.+..+ ++||+||+++++++|++|++. |++||+|+|+++|++++++++|||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln 94 (534)
T COG0318 21 ARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLN 94 (534)
T ss_pred HHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecC
Confidence 36899999999988721 399999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCC-CCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD-LSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 343 (722)
|.+...++.+++++++++++++++... +....+....+....+....... ... ..+.+.......
T Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 160 (534)
T COG0318 95 PRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDAD------DRLPITLEALAAEGPG-- 160 (534)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEeccccc------ccccccHHHHhhccCC--
Confidence 999999999999999999999997421 22222222222211222111100 000 245555332221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC--CCCCCEEEEecCccccchhHH-HHHHhh
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFL 420 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~-~~~~L~ 420 (722)
.........++|+|+++|||||||.||||++||+|++.+.......++ +++.|+++...|++|++|+.. ++.+++
T Consensus 161 --~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~ 238 (534)
T COG0318 161 --PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLL 238 (534)
T ss_pred --cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHH
Confidence 111111267899999999999999999999999999988888878888 899999999999999999965 455599
Q ss_pred cCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccc-eeEEEeecCCCCcchHHHHHhhccCC
Q 004952 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 421 ~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~-Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
.|+++++.++ .+++..++..+.++++|++.++|+++..|+........++++ ||.+++||+++++++.+.+.++++..
T Consensus 239 ~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 318 (534)
T COG0318 239 GGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPI 318 (534)
T ss_pred cCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCC
Confidence 9999999875 578889999999999999999999999999987766666665 99999999999999999999888766
Q ss_pred cccccccccccccccccCCcCC-cCccccccccCCCceEEEECCCCC-cCCCCCCccceEEE-----ecccCCCcccccc
Q 004952 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV-PYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~-~~p~G~~giGel~v-----~~~y~~~~~~~~~ 571 (722)
++++.||+||++..++...... ....+.+|+|+|+++++|+|+++. ++| |+ +|||++ ..||++ +
T Consensus 319 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~--vGei~irgp~v~~GY~~------~ 389 (534)
T COG0318 319 AILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GE--VGEIWVRGPNVMKGYWN------R 389 (534)
T ss_pred ceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CC--ceEEEEECchhhhhhcC------C
Confidence 8999999999997665555444 235567799999999999997664 666 77 599999 345555 4
Q ss_pred ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 572 ~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
++.|++.|.. .+||+|||+|++|+||+++|+||.+|+||++|++|+|.|||+++. +||.|.+|+|++++|+..
T Consensus 390 pe~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvpd~~~ 462 (534)
T COG0318 390 PEATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVPDERW 462 (534)
T ss_pred hHHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCCCCcc
Confidence 5677766653 239999999999999999999999999999999999999999995 999999999999999999
Q ss_pred CceEEEEEEEecCC--CCCCHHHHHHHHHHHHHhhcCCCee-ecCCCCCCCCchhhHHHHHHHHhh
Q 004952 652 GPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFK-VVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 652 g~~~l~a~vv~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~-~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
| ++++|+|+++++ ...+.++|+++|+++++.|.+|+.+ ++++||+|++||++|+.|++.+..
T Consensus 463 G-e~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 463 G-ERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred C-ceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 8 999999999986 3447899999999999999999655 889999999999999999998877
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-70 Score=609.90 Aligned_cols=483 Identities=70% Similarity=1.147 Sum_probs=369.7
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCC
Q 004952 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (722)
Q Consensus 240 ~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (722)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..+....+........+++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 68999999999999999999999999999999999999999999999864322222223333332222223333321111
Q ss_pred CCCCCCCCCCCCHHHHhcccCCC--CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCC
Q 004952 320 DVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (722)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~ 397 (722)
...........+|.+++...... .......+....++++++|+|||||||.||||++||++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00000011234566665321110 0000111122356899999999999999999999999987766555566788999
Q ss_pred CEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeE
Q 004952 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475 (722)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~ 475 (722)
|++++.+|++|+.+.+.++.+|+.|+++++.+...++..+++.|+++++|++.++|++++.|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765677889999999999999999999999987542 33457899999
Q ss_pred EEeecCCCCcchHHHHHhhcc-CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccc
Q 004952 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (722)
Q Consensus 476 i~~~Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giG 554 (722)
+++|||+++++..+++.+..+ +++++|.||+||++..++......+...+++|+|.++++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999998887766322 3689999999998754333222223445789999999999999999999999852259
Q ss_pred eEEEecccCCCccccccccccccceeccccC--CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 555 el~v~~~y~~~~~~~~~~~~t~~~f~~~p~~--~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
||++..++++.+.+|++++.++.+|.++|+. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999766554444555655555555555543 56779999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEE---EecCCC-CCCHHHHHHHHHHH----HHhhcCC-CeeecCCCCCCCCchh
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFV---VLKKGF-TSQPDKLKMIFSKA----IQSKLNP-LFKVVPEFPRTASNKL 703 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~v---v~~~~~-~~~~~~l~~~l~~~----l~~~~~p-~~~~v~~lP~t~~GKv 703 (722)
+.||+|.+|+|++++++..|.+.++||| +++++. ..+.++|+++|+++ |+.++.| .+.++++||+|+||||
T Consensus 401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi 480 (499)
T PLN03051 401 RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480 (499)
T ss_pred hcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccH
Confidence 2399999999999999887756799999 777664 35667888777665 4444444 5668999999999999
Q ss_pred hHHHHHHHHhhhhhhcccC
Q 004952 704 LRRVLRDQIKHELSVRSRI 722 (722)
Q Consensus 704 dR~~L~~~~~~~~~~~~~~ 722 (722)
+|++|++.+.+.+..++||
T Consensus 481 ~r~~L~~~~~~~~~~~~~~ 499 (499)
T PLN03051 481 LRRVLRDQLKKELSGRSKL 499 (499)
T ss_pred HHHHHHHHHHHhhccccCC
Confidence 9999999999999888875
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=616.11 Aligned_cols=508 Identities=23% Similarity=0.327 Sum_probs=419.9
Q ss_pred CcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004952 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (722)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~ 244 (722)
.|+.+...|.+++++++++ +..+|+++|+++.+.. ..+++||+||.++++++|++|.+. +++||+|+++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHA-DGGRKDKVALRYLDAS----RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP 109 (570)
T ss_pred ccCCCCceeHHHHHHHHhh-ccCCCCceEEEEECCC----CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 6888889999998888754 1357999999986531 234899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCC
Q 004952 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG 322 (722)
Q Consensus 245 ~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 322 (722)
++++++|||+++|++++|+++.++.+++.+++++++++++++++........ ...+. ..+++....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---- 177 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDV---- 177 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCc----
Confidence 9999999999999999999999999999999999999999998754321110 01111 222222111
Q ss_pred CCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEE
Q 004952 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (722)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~ 402 (722)
....+..++.+++..... ........+++++|++|||||||.||||+++|+++++.+......+++.++|++++
T Consensus 178 -~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~ 251 (570)
T PRK04319 178 -EEGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC 251 (570)
T ss_pred -CCCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe
Confidence 011234566666544322 12223446789999999999999999999999999888877777788999999999
Q ss_pred ecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEee
Q 004952 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAST 479 (722)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~ 479 (722)
..+++|.++. +.++.++..|+++++.+...++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|
T Consensus 252 ~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSV 331 (570)
T ss_pred cCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEc
Confidence 9999999886 6789999999999998777788999999999999999999999999987542 234568899999999
Q ss_pred cCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe
Q 004952 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (722)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (722)
|+++++++.+++.+.+ +.++++.||+||++..+...........+++|+|+++++++|+|++++++|.|+. |||++.
T Consensus 332 G~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~ 408 (570)
T PRK04319 332 GEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIK 408 (570)
T ss_pred ccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEc
Confidence 9999999999888765 5789999999999865443333333456789999999999999999999999985 999995
Q ss_pred c-------ccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 560 P-------LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 560 ~-------~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
. ||++ +++.++++|.+ | ||+|||+|++++||+++++||+||+||++|++|+|.|||++|.
T Consensus 409 ~~~~~~~~GY~~------~~~~~~~~~~~-----g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~ 475 (570)
T PRK04319 409 KGWPSMMRGIWN------NPEKYESYFAG-----D--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM 475 (570)
T ss_pred CCCChHHhHhcC------CHHHhhhhhcC-----C--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh
Confidence 3 4554 45566666651 2 9999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L 708 (722)
+||+|.+++|++.+++..| +.+++|+++.++...+. ++|+++++++|+.|+.|. ++++++||+|++||++|++|
T Consensus 476 -~~~~V~~~~v~g~~~~~~g-~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L 553 (570)
T PRK04319 476 -EHPAVAEAGVIGKPDPVRG-EIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVL 553 (570)
T ss_pred -hCCCeeecceecccCcCCc-eEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHH
Confidence 9999999999999998888 89999999887654332 588999999999999995 55899999999999999999
Q ss_pred HHHHhh
Q 004952 709 RDQIKH 714 (722)
Q Consensus 709 ~~~~~~ 714 (722)
+++..+
T Consensus 554 ~~~~~~ 559 (570)
T PRK04319 554 KAWELG 559 (570)
T ss_pred HHHHhC
Confidence 998654
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=612.17 Aligned_cols=486 Identities=18% Similarity=0.177 Sum_probs=384.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
.++++|+++|+.+.+.+ ++||+||.++++++|++|.+. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~--~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 28 LCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY--PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc--cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 34789999999876532 899999999999999999875 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc---CCCcEEEEcCCCCCCCCCCCCCCCCHHHHhccc--
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV-- 339 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 339 (722)
|.++.+++.+++++++++++|+++.... .+...... .+...+.+.... ....+.+.....
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~ 163 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEYPFSLIYMEEVR---------KELSFWEKCRIGIY 163 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccccccEEEEehhh---------hhccHHHhhhhhhh
Confidence 9999999999999999999999875421 11111110 112222221100 001111111000
Q ss_pred ---CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHH
Q 004952 340 ---DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (722)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (722)
...............++++++|+|||||||.||||+++|+++.....+....++++++|+++++.|+.|.+++ ..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 0000000011123567999999999999999999999999998888777777889999999999999999887 457
Q ss_pred HHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhc
Q 004952 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (722)
Q Consensus 416 ~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~ 495 (722)
+.++..|+++++.....++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+
T Consensus 244 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 244 LFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHC
Confidence 88999999999876556888999999999999999999999999876554556789999999999999999999998888
Q ss_pred cCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEE-----ecccCCCcccc
Q 004952 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (722)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (722)
++++++|.||+||++.+++...........++|+|++|++++|+|+ .++++|.|+. |||+| ..||++.
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~~---- 397 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSGYLGE---- 397 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCcccccccCC----
Confidence 7889999999999986555443333334568999999999999995 5889999985 99998 3466653
Q ss_pred ccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce------eEE
Q 004952 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE------TAA 643 (722)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~------~~v 643 (722)
++.+ .|.. .++.+||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|. +||+|.+ ++|
T Consensus 398 --~~~~--~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~~~v 469 (539)
T PRK06334 398 --DFGQ--GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGPLVV 469 (539)
T ss_pred --cccc--ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCceEE
Confidence 3322 2221 124569999999999999999999999999999999999999999995 9999998 677
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++.+++ . ..+++|++.. .+.++++++|+++ ++.||.|. +.++++||+|+||||||++|++++...
T Consensus 470 ~~~~~~--~-~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 470 CGLPGE--K-VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSL 536 (539)
T ss_pred EcCCCC--c-eEEEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHh
Confidence 777642 1 4566676642 3457899999986 78899995 558999999999999999999986654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=616.46 Aligned_cols=510 Identities=21% Similarity=0.214 Sum_probs=401.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++..........+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++| +++|++
T Consensus 35 a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~ 113 (632)
T PRK07529 35 AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPIN 113 (632)
T ss_pred HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCC
Confidence 37899999999753322222345999999999999999999999 9999999999999999999999999999 569999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc--EEEEcCCCCCCCC-C---------CCCCCCCH
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGI-P---------LREQDLSW 332 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~---------~~~~~~~~ 332 (722)
|.++++++.+++++++++++|+++.... ....+.........+.. ++.+......... . ...+...+
T Consensus 114 ~~~~~~~i~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (632)
T PRK07529 114 PLLEPEQIAELLRAAGAKVLVTLGPFPG-TDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192 (632)
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCCC-chHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCH
Confidence 9999999999999999999999864310 00111111122222222 2222211100000 0 11234456
Q ss_pred HHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh
Q 004952 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (722)
.+.+..... ..........++++++++|||||||.||||+++|+++++........+++.+++++++..|++|..+.
T Consensus 193 ~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 269 (632)
T PRK07529 193 DAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNAL 269 (632)
T ss_pred HHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHH
Confidence 665544322 11112223467999999999999999999999999998887777777888999999999999998887
Q ss_pred -HHHHHHhhcCCEEEEecCC-C-C---hhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcc
Q 004952 413 -VILFSSFLNGATLALYQGS-P-L---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (722)
Q Consensus 413 -~~~~~~L~~G~~lv~~~~~-~-~---~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~ 486 (722)
..++.+|..|+++++.+.. . + ...++++|+++++|++.++|+++..|++... ...++++||.+++||++++++
T Consensus 270 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~ 348 (632)
T PRK07529 270 LVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVE 348 (632)
T ss_pred HHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHH
Confidence 4688999999999997632 1 2 2478899999999999999999999987653 334689999999999999999
Q ss_pred hHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEE--ECCCC---CcCCCCCCccceEEEe-c
Q 004952 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI--LDECG---VPYPDDQPCVGEVGLF-P 560 (722)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v--ld~~~---~~~p~G~~giGel~v~-~ 560 (722)
+.+++.+.+ +++++|.||+||+++++...........+++|+|++++.++| +|++| +++|.|+. |||+|. +
T Consensus 349 l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~--Gel~v~gp 425 (632)
T PRK07529 349 VFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV--GVLCIAGP 425 (632)
T ss_pred HHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc--eEEEEECC
Confidence 999888765 689999999999987655443333446689999999999888 47777 88999985 999993 3
Q ss_pred ccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce
Q 004952 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640 (722)
Q Consensus 561 ~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~ 640 (722)
+.+.+ |++++.+...|. +.+||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. +||+|.+
T Consensus 426 ~v~~G---Y~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~-~~p~V~~ 495 (632)
T PRK07529 426 NVFSG---YLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL-RHPAVAL 495 (632)
T ss_pred Ccccc---ccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCeeE
Confidence 32221 334444444443 2349999999999999999999999999999999999999999995 9999999
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 641 ~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
|+|++.+++..| +.+++||++.++...+.+++++++++++++ +++|. ++++++||+|++|||+|++|++.+...
T Consensus 496 a~vvg~~d~~~g-e~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~ 571 (632)
T PRK07529 496 AAAVGRPDAHAG-ELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRR 571 (632)
T ss_pred EEEEeccCCCCC-ceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHH
Confidence 999999998887 899999999988777889999999999975 78995 558999999999999999999876543
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=629.13 Aligned_cols=461 Identities=19% Similarity=0.216 Sum_probs=382.4
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 004952 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (722)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~ 266 (722)
.+||++|+++ +. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|.
T Consensus 18 ~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~ 88 (705)
T PRK06060 18 GWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88 (705)
T ss_pred cCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence 4799999985 34 799999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCC
Q 004952 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (722)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (722)
++.+++.+++++++++++|+++........ .. .....++...... ..
T Consensus 89 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------~~------------------~~~~~~~~~~~~~---~~ 135 (705)
T PRK06060 89 LHRDDHALAARNTEPALVVTSDALRDRFQP------------SR------------------VAEAAELMSEAAR---VA 135 (705)
T ss_pred CCHHHHHHHHhcCCCcEEEEchHHhhhhcc------------cc------------------cchhhhhhhhccc---cC
Confidence 999999999999999999998743211000 00 0001111111000 00
Q ss_pred CCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh-hhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCE
Q 004952 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (722)
Q Consensus 347 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (722)
........+++++|++|||||||.||||+++|+++.+.+.+.. ..+++.+++++++..++.|+.++ ..++.+|+.|++
T Consensus 136 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 0011234568999999999999999999999999988776553 45788999999999999999887 568899999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+...++..+..+++++++|+++++|+++..|++... ..++++||.+++|||++++++.+++.+.+++++++|.|
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 9998766677788899999999999999999999987542 33578999999999999999999998888778999999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccce
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYF 579 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f 579 (722)
|+||++.++.... ......+++|+|+++++++|+|++|+++|.|+. |||+|. .||++.++ .+ +
T Consensus 294 G~tE~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~GY~~~~~------~~---~ 361 (705)
T PRK06060 294 GSTEVGQTFVSNR-VDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKGYWNRPD------SP---V 361 (705)
T ss_pred eccccCceEEecc-CCCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhhhhCCCc------cc---c
Confidence 9999986543322 222345789999999999999999999999995 999993 46766432 21 1
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
.+.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+++|++.++...+ +.+++|
T Consensus 362 ------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~~~a~ 433 (705)
T PRK06060 362 ------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-STLQAF 433 (705)
T ss_pred ------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-eeEEEE
Confidence 13459999999999999999999999999999999999999999995 9999999999999988776 899999
Q ss_pred EEecCCCCCCH---HHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHH
Q 004952 660 VVLKKGFTSQP---DKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 660 vv~~~~~~~~~---~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
|++.++...+. .+++++|+++||.||+| .++++++||+|+|||+||++|++.+
T Consensus 434 vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 434 LVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred EEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 99876544443 47889999999999999 5669999999999999999999865
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=606.81 Aligned_cols=495 Identities=18% Similarity=0.155 Sum_probs=390.6
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++|+++|+++++. ++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 16 ~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl 87 (563)
T PLN02860 16 LATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPL 87 (563)
T ss_pred HHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeC
Confidence 3478999999998666 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHh-hcCCCcE-EEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPLKA-IVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+|.++.+++.+++++++++++++++... .....+. ...+... +++.................++++......
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
T PLN02860 88 NYRWSFEEAKSAMLLVRPVMLVTDETCS------SWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161 (563)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecccc------hHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence 9999999999999999999999987431 1111111 1112111 111111000000000011111111111000
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
.........++++++++|||||||.||||+++|++++.........+++.++|+++...|++|+.++..++.+|..
T Consensus 162 ----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~ 237 (563)
T PLN02860 162 ----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMV 237 (563)
T ss_pred ----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence 0001122357899999999999999999999999998776666667889999999999999999999888999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.... ....+++||.+++||+++++++.+++.+.+++.+
T Consensus 238 G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 238 GACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred CceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 99999986 46788999999999999999999999999875422 2345789999999999999999999988887889
Q ss_pred ccccccccccccccccCCcCC----------------------cCccccccccCCCceEEEECCCCCcCCCCCCccceEE
Q 004952 500 IIESCGGTELSSAYIQGSLLQ----------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~ 557 (722)
++|.||+||+++.++...... .....++|+|+++++++|+|++ .|+ +|||+
T Consensus 317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~--~Gel~ 389 (563)
T PLN02860 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSR--VGRIL 389 (563)
T ss_pred eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCc--eeEEE
Confidence 999999999976443322111 0112378999999999999976 465 49999
Q ss_pred E-----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 558 v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
+ ..||++ +++.|++.|.. .+||+|||+|++++||+++|+||+||+||++|++|+|.|||++|.
T Consensus 390 v~g~~~~~GY~~------~~~~t~~~~~~------~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 457 (563)
T PLN02860 390 TRGPHVMLGYWG------QNSETASVLSN------DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457 (563)
T ss_pred EecCcccccccC------CccccchhccC------CCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHH
Confidence 8 345555 45566665543 239999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCC--------------CCCHHHHHHHHHH-HHHhhcCCC-eee-cCCC
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------------TSQPDKLKMIFSK-AIQSKLNPL-FKV-VPEF 695 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~--------------~~~~~~l~~~l~~-~l~~~~~p~-~~~-v~~l 695 (722)
.||+|.+|+|++.+++..+ +.++|||+++++. ..+.+++++++++ .|+.|++|. ++. +++|
T Consensus 458 -~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~l 535 (563)
T PLN02860 458 -QHPGVASVVVVGVPDSRLT-EMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPF 535 (563)
T ss_pred -hCCCcceeEEEEEecCcCC-ceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCC
Confidence 9999999999999998877 8999999988652 2456789999998 599999995 444 5789
Q ss_pred CCCCCchhhHHHHHHHHhhhhhhc
Q 004952 696 PRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 696 P~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
|+|++|||+|++|++++.+.+.+-
T Consensus 536 P~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 536 PLTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred CCCcccchhHHHHHHHHHHHHhcc
Confidence 999999999999999998876553
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=595.98 Aligned_cols=480 Identities=19% Similarity=0.187 Sum_probs=391.6
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+. ++||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 52 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 123 (537)
T PRK13382 52 AAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLL 123 (537)
T ss_pred HHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEec
Confidence 4478999999998665 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... +.........+....++..... .....++++......
T Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-- 188 (537)
T PRK13382 124 NTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE-------DHDLTVEVLIAAHAG-- 188 (537)
T ss_pred CcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC-------cccccHHHHhhccCc--
Confidence 9999999999999999999999987432 1112211111111111111000 012344444432211
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
. .....+++.++++|||||||.||||+++|+++..........+.+..+++++...|++|..++..++.++..|+
T Consensus 189 ---~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~ 263 (537)
T PRK13382 189 ---Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC 263 (537)
T ss_pred ---C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCc
Confidence 0 11124688999999999999999999999998887777777788889999999999999999888899999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
++++.+ ..++..+++.|+++++|++.++|++++.|++... ....++++||.+++|||++++++.+.+.+.++ .+++
T Consensus 264 ~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~ 341 (537)
T PRK13382 264 TIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIY 341 (537)
T ss_pred EEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEE
Confidence 998865 5678899999999999999999999999987542 12345678999999999999999988887764 6799
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-cccCCCcccccccccccccee
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFR 580 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~~~~~~t~~~f~ 580 (722)
|.||+||++.+++..........+++|+|++++.++|+|++++++|.|+. |||++. ++.+.+ |. ++.+.. |.
T Consensus 342 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g---Y~-~~~~~~-~~ 414 (537)
T PRK13382 342 NNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFDG---YT-SGSTKD-FH 414 (537)
T ss_pred ecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCcccC---cc-ccchhh-cc
Confidence 99999999865543332223456789999999999999999999999985 999993 333321 22 233332 21
Q ss_pred ccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEE
Q 004952 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (722)
Q Consensus 581 ~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~v 660 (722)
.| ||+|||++++++||+++|+||+||+||++|+||+|.|||+.|. .||+|.+++|++.+++..| +.+++||
T Consensus 415 -----~g--~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~v 485 (537)
T PRK13382 415 -----DG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG-QRLAAFV 485 (537)
T ss_pred -----CC--CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-CEEEEEE
Confidence 12 9999999999999999999999999999999999999999995 9999999999999988777 8999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
++.++...+.++++++++++|+.|++|. ++++++||+|++||++|++|++
T Consensus 486 v~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 486 VLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 9987766777899999999999999995 5588999999999999999864
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-67 Score=593.79 Aligned_cols=495 Identities=20% Similarity=0.235 Sum_probs=400.6
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+.+|+++|+++.+.+ .+..+.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 35 ~~~p~~~A~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 35 ASCPDKTAVTAVRLG--TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred HHCCCceEEEecCCC--ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEecccc
Confidence 578999999986521 12335999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC-
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH- 342 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (722)
.++.+++.+++++++++++++++.+.. .+..+....+....+. .++++... +..++.++.......
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEALLITPAWEQ 181 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHHHhhCCcccc
Confidence 999999999999999999999875310 0000111112122221 12222111 122344443322110
Q ss_pred --CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHh
Q 004952 343 --PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 343 --~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
............++++++++|||||||.||||+++|++++..+......+++.+++++++..|++|..+. +.++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0001111223467899999999999999999999999999888877778899999999999999998876 6688999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
..|+++++.+ ..++..+++.++++++|++.++|+++..|.........++++||.+++||+++++++.+++.+.+ +++
T Consensus 262 ~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 339 (547)
T PRK13295 262 MLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAK 339 (547)
T ss_pred HcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCC
Confidence 9999999876 46788999999999999999999999999887655566789999999999999999999888776 789
Q ss_pred ccccccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccc
Q 004952 500 IIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNAD 573 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~ 573 (722)
++|.||+||++.+.+..... ......++|+|++++.++|+|++++++|.|+. |||+|. .||++ +++
T Consensus 340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~ 411 (547)
T PRK13295 340 IVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQVRGCSNFGGYLK------RPQ 411 (547)
T ss_pred eEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEEEEcCcccccccC------Ccc
Confidence 99999999998654333221 12234688999999999999999999999986 999993 34444 444
Q ss_pred ccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
.|+..+ +| ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+++|++++++..|
T Consensus 412 ~t~~~~------~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~v~~~~v~~~~~~~~g- 481 (547)
T PRK13295 412 LNGTDA------DG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPAIAQVAIVAYPDERLG- 481 (547)
T ss_pred ccccCC------CC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeecCCCC-
Confidence 454331 23 9999999999999999999999999999999999999999995 9999999999999988887
Q ss_pred eEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 654 EVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
++++++|+++++...+.+++++++++ .++.||+| .++++++||+|++||++|++|++++.+
T Consensus 482 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 482 ERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred cEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence 89999999987766677899999997 79999999 455999999999999999999998865
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=596.91 Aligned_cols=490 Identities=19% Similarity=0.221 Sum_probs=395.7
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
+.+|+++|+++...+ .++||+||+++++++|++|++ . +++||+|+++++|++++++++|||+++|++++|++
T Consensus 50 ~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 50 HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcC
Confidence 468999999975431 279999999999999999999 8 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.++++++++++++++.+.. ..+. ......+.+..... .. ........+.++......
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--- 188 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLS-PLGVPVIGVPENYD-FD-SKRIEFPKFYELIKEDFD--- 188 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHH---------HHHH-hcCCcEEecCcccc-cc-cCccCcccHHHHhhcCCc---
Confidence 999999999999999999999987432 1111 11112222211000 00 000122345555443221
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCC-CCCCEEEEecCccccchh-HHHHHH
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDL-KVGDVYCWPTNLGWVMGP-VILFSS 418 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~-~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (722)
..+.....++++++++|||||||.||||+++|+++.+.+..... .+.. ...++++...|+.|..++ ..++.+
T Consensus 189 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 189 --FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred --ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 11223345789999999999999999999999999877654432 2222 356788999999999887 446678
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC-CCCCccceeEEEeecCCCCcchHHHHHhhccC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~ 497 (722)
+..|+++++.+ ..++..++++|+++++|++.++|++++.|.+.... ...++++||.+++||++++++..+++.+.+++
T Consensus 267 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 345 (560)
T PLN02574 267 LSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH 345 (560)
T ss_pred HhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC
Confidence 88999999886 46788999999999999999999999999886532 34568899999999999999999998888878
Q ss_pred CcccccccccccccccccCCc-CCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccccc
Q 004952 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLL 570 (722)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~ 570 (722)
+++++.||+||++.+.+.... ......+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 346 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~GY~~------ 417 (560)
T PLN02574 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMKGYLN------ 417 (560)
T ss_pred CcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhhhhcC------
Confidence 899999999999865433222 2223457899999999999999 78999999995 999993 45554
Q ss_pred cccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCC
Q 004952 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (722)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~ 650 (722)
+++.|++.|.. .+||+|||+|++++||+++++||+||+||++|++|++.|||++|. .||+|.+++|++++++.
T Consensus 418 ~~~~t~~~~~~------~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~~~~~~ 490 (560)
T PLN02574 418 NPKATQSTIDK------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTAVPDKE 490 (560)
T ss_pred ChhHhhhhccC------CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEccccCC
Confidence 55667666643 239999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
.| +.+++||+.+++...+.++++++++++|+.|+.|. +.++++||+|++||++|+.|++.+....
T Consensus 491 ~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~ 556 (560)
T PLN02574 491 CG-EIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSV 556 (560)
T ss_pred CC-cceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcc
Confidence 77 88999999887766777899999999999999995 5589999999999999999999986643
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=592.69 Aligned_cols=495 Identities=21% Similarity=0.227 Sum_probs=396.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+++.++ .+||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 34 a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l 105 (562)
T PRK05677 34 CQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeec
Confidence 367899999998766 89999999999999999997 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCC-CC------------------CCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-DV------------------GIP 324 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------~~~ 324 (722)
+|.++.+++.+++++++++++|+++... +....+......+.+++..... .. ...
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 106 NPLYTAREMEHQFNDSGAKALVCLANMA------HLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred CCCCCHHHHHHHHhccCceEEEEecchh------hhHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 9999999999999999999999976432 1112221111112222211000 00 000
Q ss_pred CCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC--CCC-CCEEE
Q 004952 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKV-GDVYC 401 (722)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~--~~~-~d~~l 401 (722)
..++...+.+.+..... .........++++++++|||||||.||||+++|+++...+......+. +.. .++++
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 180 HLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred CCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 00122334444433221 111223346799999999999999999999999999877655544433 343 36788
Q ss_pred EecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
+..|+.|..+. +.++.++..|++.++.+...++..+++.|+++++|++..+|+++..|.........++++||.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 89999998887 56778888999888877656788899999999999999999999999876544445678999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF- 559 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~- 559 (722)
+++++++.+++.+.+ ++++++.||+||++.++..... .....+++|+|++++.++|+|++++++|.|+. |||++.
T Consensus 336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g 411 (562)
T PRK05677 336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV--GELCVKG 411 (562)
T ss_pred ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCCC--eEEEEec
Confidence 999999988887764 6899999999998865443322 23345789999999999999999999999985 999993
Q ss_pred ----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccC
Q 004952 560 ----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (722)
Q Consensus 560 ----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~ 635 (722)
+||++ +++.|++.|..+ +||+|||+|++++||.+++.||+||+||++|++|+|.|||++|. .|
T Consensus 412 ~~~~~gY~~------~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~-~~ 478 (562)
T PRK05677 412 PQVMKGYWQ------RPEATDEILDSD------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA-AL 478 (562)
T ss_pred CccchhhcC------CchhhhhccCCC------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-hC
Confidence 45555 556777777532 39999999999999999999999999999999999999999995 99
Q ss_pred CCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 636 p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
|+|.+++|++++++..+ +.+++|++++++...+.++++++++++|+.|++|. ++++++||+|+|||++|++|++++..
T Consensus 479 ~~v~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~ 557 (562)
T PRK05677 479 PGVLQCAAIGVPDEKSG-EAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELK 557 (562)
T ss_pred CCccEEEEEeccCccCC-ceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHH
Confidence 99999999999988877 88999999887666778899999999999999994 55899999999999999999987765
Q ss_pred hh
Q 004952 715 EL 716 (722)
Q Consensus 715 ~~ 716 (722)
+.
T Consensus 558 ~~ 559 (562)
T PRK05677 558 KA 559 (562)
T ss_pred hc
Confidence 53
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-68 Score=522.83 Aligned_cols=496 Identities=20% Similarity=0.247 Sum_probs=418.6
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+|+++||++|++++++ .+||+||+++++++|..|++. +++||+|.+.+||..+++++++|.+|+|+++|.-
T Consensus 37 ~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlA 108 (542)
T COG1021 37 HAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108 (542)
T ss_pred HHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhc
Confidence 3479999999999888 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
-|++...+|.+..+.+.++.+|.+... .++..-+....+....+....++...... .....+..+....
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~tlr~v~v~ge~~-------~~~~~~~~~~~~a--- 177 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVIVAGEAE-------HPSVLEAALCHPA--- 177 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCcceEEEEccCCC-------CcchhhhhhhCcc---
Confidence 999999999999999999999998643 34444455555666666633333222211 0111222222221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh--HHHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~L~~ 421 (722)
....+..+.+++++||...+.||||.||-+..+|..+..++......++++..+++++..|..|.+.+ -.+++.+++
T Consensus 178 -~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a 256 (542)
T COG1021 178 -GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256 (542)
T ss_pred -ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeee
Confidence 12233456678899999999999999999999999999988888889999999999999998887766 458999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++|+.+ ++++.....+|++++||+..++|.+...|++..+.+..+++|||.+-+||..+++++.+++...+ +|.+-
T Consensus 257 gG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQ 334 (542)
T COG1021 257 GGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQ 334 (542)
T ss_pred ccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHH
Confidence 99999976 67788889999999999999999999999999888999999999999999999999999887765 78999
Q ss_pred ccccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEEeccc-CCCccccccccccccce
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLFPLY-LGASDRLLNADHEEVYF 579 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~~~y-~~~~~~~~~~~~t~~~f 579 (722)
+.+|+.|.-++++-.......-..+-|+|+ |.-+++|+|++|++|++|++ |+|.....| +. .||..++.++..|
T Consensus 335 QVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTir--GYyrap~HNa~aF 410 (542)
T COG1021 335 QVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIR--GYYRAPEHNARAF 410 (542)
T ss_pred HHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeee--eeccCchhhhhcc
Confidence 999999976655443332223335779998 57799999999999999996 999883333 22 1344666778888
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
..+. +|+|||++++++||+|.+.||.+|||+.+|++|..+|||+.|+ .||.|.+|++|+++|+..| ++.|||
T Consensus 411 ~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-EksCAf 482 (542)
T COG1021 411 DADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-EKSCAF 482 (542)
T ss_pred CcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-cceeEE
Confidence 8765 7999999999999999999999999999999999999999997 9999999999999999999 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHH-HHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 660 VVLKKGFTSQPDKLKMIFSKA-IQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~-l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
|++++. ..+..+|+++|++. |.+|.+| +..++++||+|+-||||||+|++.+...
T Consensus 483 iv~~~~-~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 483 IVVKEP-PLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred EEecCC-CCCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence 999874 47778999999986 7889999 7779999999999999999999987754
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=589.81 Aligned_cols=486 Identities=21% Similarity=0.248 Sum_probs=398.6
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++|+++|+++.+.+ +++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 107 (537)
T PLN02246 34 SEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANP 107 (537)
T ss_pred HhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCC
Confidence 578999999875321 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
.++.+++..++++++++++|+++... +.+...........+.+.... .....+.++......
T Consensus 108 ~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~---- 169 (537)
T PLN02246 108 FYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELTQADEN---- 169 (537)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHhcCCCC----
Confidence 99999999999999999999987432 111122111111222222110 122334444432211
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCCCCCCEEEEecCccccchh-HHHHHHhh
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (722)
..+.....+++++|++|||||||.||||+++|+++++.+.+... .+++.++|+++...|+.|.+++ ..++.++.
T Consensus 170 -~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~ 248 (537)
T PLN02246 170 -ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR 248 (537)
T ss_pred -CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence 12233456799999999999999999999999999877654432 4678999999999999999987 44678899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++++.+
T Consensus 249 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 327 (537)
T PLN02246 249 VGAAILIMP-KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVL 327 (537)
T ss_pred cCCEEEEeC-CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeE
Confidence 999999987 4577899999999999999999999999987665555668899999999999999999999998888889
Q ss_pred cccccccccccccccCCc----CCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccccc
Q 004952 501 IESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLL 570 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~ 570 (722)
++.||+||++.+++.... ......+++|+|+++++++|+| +.++++|.|+. |||++. .||++
T Consensus 328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~------ 399 (537)
T PLN02246 328 GQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKGYLN------ 399 (537)
T ss_pred eccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhccccC------
Confidence 999999999865433211 1123456899999999999999 57999999996 999993 45554
Q ss_pred cccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCC
Q 004952 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (722)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~ 650 (722)
+++.++.+|.. .+||+|||+|++++||+++++||+||+||++|+||+|.|||+.|. .||+|.+++|++.++..
T Consensus 400 ~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~ 472 (537)
T PLN02246 400 DPEATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMKDEV 472 (537)
T ss_pred CchhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEcccCcc
Confidence 44556555532 249999999999999999999999999999999999999999995 99999999999998887
Q ss_pred CCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
.+ +.++++++..++...+.++|+++|+++|+.|+.| +++++++||+|+|||++|++|++++..
T Consensus 473 ~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 473 AG-EVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred CC-ceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 77 8899999988776667789999999999999999 566999999999999999999988653
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=586.36 Aligned_cols=494 Identities=20% Similarity=0.241 Sum_probs=402.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+++.+. ++||+||.++++++|..|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 91 (546)
T PRK08314 20 ARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91 (546)
T ss_pred HHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeec
Confidence 368899999999877 999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCC----CC--------------CCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND----VG--------------IPL 325 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------~~~ 325 (722)
+|.++.+++.+++++++++++++++.... .+...........+++...... .. ...
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 92 NPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred CcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 99999999999999999999999875421 1111111111111111100000 00 000
Q ss_pred CCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecC
Q 004952 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (722)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~ 405 (722)
..+...|++....... .......++++++++|||||||.||||+++|+++++.+......+++.++|++++..|
T Consensus 166 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 239 (546)
T PRK08314 166 PGGVVAWKEALAAGLA------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLP 239 (546)
T ss_pred ccccccHHHHhcccCC------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcC
Confidence 1123445555443211 1223456789999999999999999999999999998888777888999999999999
Q ss_pred ccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCC
Q 004952 406 LGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 484 (722)
Q Consensus 406 ~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~ 484 (722)
+.|..++ +.++.+|.+|+++++.+ ..++..++++++++++|++.++|++++.++........+++++|.+++||++++
T Consensus 240 ~~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 240 LFHVTGMVHSMNAPIYAGATVVLMP-RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred chHHHHHHHHHHHHHHcCCeEEecC-CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 9999987 56789999999999987 357788999999999999999999999998765555567889999999999999
Q ss_pred cchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe----
Q 004952 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF---- 559 (722)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~---- 559 (722)
+++.+++.+.+ +.++++.||+||++......... .....++|+|+++++++|+| ++++++|.|.. |||++.
T Consensus 319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~ 394 (546)
T PRK08314 319 EAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEIVVHGPQV 394 (546)
T ss_pred HHHHHHHHHHc-CCcEEecccccccccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEEEEECCch
Confidence 99999988776 57899999999998654433222 23456899999999999999 46999999985 999993
Q ss_pred -cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCc
Q 004952 560 -PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (722)
Q Consensus 560 -~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V 638 (722)
.||++ +++.+++.|..+ +|.+||+|||+|+++++|.++++||+||+||++|+||+|.|||++|. +||+|
T Consensus 395 ~~gY~~------~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~~v 464 (546)
T PRK08314 395 FKGYWN------RPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHPAI 464 (546)
T ss_pred hccccC------ChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCcch
Confidence 34544 445666666543 35569999999999999999999999999999999999999999995 99999
Q ss_pred ceeEEEeecCCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 639 LETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 639 ~~~~vv~~~~~~~g~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
.+++|++.++...+ +.+++|++++++. ..+.++++++++++|+.|++| .++++++||+|+|||++|+.|++..+..
T Consensus 465 ~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~ 543 (546)
T PRK08314 465 QEACVIATPDPRRG-ETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR 543 (546)
T ss_pred heEEEEeCCCcccC-ceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence 99999999988777 8999999988753 245589999999999999999 5669999999999999999998765543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=601.16 Aligned_cols=506 Identities=17% Similarity=0.123 Sum_probs=380.1
Q ss_pred CCCCCCceEEEEec-CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++||++|+.+.. ..+..+.++.+||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 54 a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 133 (651)
T PLN02736 54 VETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPL 133 (651)
T ss_pred HHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 47899999996421 111123456799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCC----CCCCCCCCHHHHhcc
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGI----PLREQDLSWKDFLSS 338 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 338 (722)
++.++.+++.+++++++++++|++.... +.........+. +.+++......... ........|+++.+.
T Consensus 134 ~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (651)
T PLN02736 134 YDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQ 207 (651)
T ss_pred ecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHh
Confidence 9999999999999999999999987432 222222222322 22222111000000 001123457776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (722)
.... ..+.....++++++|+|||||||.||||++||++++..+.+....+++.++|++++++|++|+++.+.++.+
T Consensus 208 ~~~~----~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 283 (651)
T PLN02736 208 GRSS----PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVM 283 (651)
T ss_pred cccC----CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3220 111223467999999999999999999999999999988888778889999999999999999999888899
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC-----------------------------CCCC-
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----------------------------LEGL- 468 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-----------------------------~~~~- 468 (722)
|..|+++++.+. ++..+++.|+++++|+++++|++++.|.+... ....
T Consensus 284 l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (651)
T PLN02736 284 LHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361 (651)
T ss_pred HHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCch
Confidence 999999998864 56789999999999999999999988754310 0000
Q ss_pred -----------Cc-cceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceE
Q 004952 469 -----------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536 (722)
Q Consensus 469 -----------~l-~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 536 (722)
.+ ++||.+++||+++++++.+++...+ ++++++.||+||+++.++.... .....+++|+|+||+++
T Consensus 362 ~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v 439 (651)
T PLN02736 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEV 439 (651)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCC-CCCCCCccCCccCceEE
Confidence 01 4899999999999999999887665 5789999999999865443332 23456789999999999
Q ss_pred EEECC-CCCcCCCCCCc-cceEEE-ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCC
Q 004952 537 VILDE-CGVPYPDDQPC-VGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613 (722)
Q Consensus 537 ~vld~-~~~~~p~G~~g-iGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd 613 (722)
+|+|. ++.....+.++ .|||++ +++.+. .|+.+++.|++.|..+ +||+|||+|++|+||+|+|+||.||
T Consensus 440 ~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~--GY~~~~~~t~~~~~~d------gw~~TGDlg~~d~dG~l~i~GR~kd 511 (651)
T PLN02736 440 KLVDVPEMNYTSEDQPYPRGEICVRGPIIFK--GYYKDEVQTREVIDED------GWLHTGDIGLWLPGGRLKIIDRKKN 511 (651)
T ss_pred EEEEccccCcccCCCCCCCceEEecCCcccc--ccccCHHHHHhhhccC------CCeeccceEEEcCCCcEEEEEechh
Confidence 99983 32221111111 489988 333222 1223666777777532 3999999999999999999999999
Q ss_pred eeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC--------CCCHHHHHHHHH------
Q 004952 614 TMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------TSQPDKLKMIFS------ 678 (722)
Q Consensus 614 ~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~--------~~~~~~l~~~l~------ 678 (722)
+||+ +|++|+|.|||++|. .||.|.+|+|++. . .+ +.++|+|+++++. ..+..++.++++
T Consensus 512 ~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~--~-~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (651)
T PLN02736 512 IFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD--S-LN-SSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRA 586 (651)
T ss_pred heEcCCCcEechHHHHHHHh-cCCCeeEEEEEec--C-CC-ceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHH
Confidence 9997 699999999999995 9999999999983 2 34 7899999987521 122122322222
Q ss_pred ------------HHHHhhcCC-CeeecCCCC------CCCCchhhHHHHHHHHhhhhhh
Q 004952 679 ------------KAIQSKLNP-LFKVVPEFP------RTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 679 ------------~~l~~~~~p-~~~~v~~lP------~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+.|+.|..| ++.++++.| +|++||++|++|++.+++++++
T Consensus 587 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~ 645 (651)
T PLN02736 587 AVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISD 645 (651)
T ss_pred HHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence 147778888 555788776 7999999999999999888764
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-66 Score=587.30 Aligned_cols=494 Identities=16% Similarity=0.158 Sum_probs=385.0
Q ss_pred CCCCCCceEEEEecCCCC--CCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 186 RRKEDNTVAIVWREDRCD--ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~--~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
++++||++|+++.+.+.. ....+++||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|
T Consensus 16 a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVL 95 (552)
T ss_pred HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEE
Confidence 367899999998654210 11234799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC-C--CcEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
++|.++.+++.+++++++++++|+++... ....+.... . ...+.+... .......+.++....
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIPKAH-------LARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLATLLRDG 161 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEeccHHH-------HHHHHhccCccchhheeccccc-------cccCCccHHHhcccC
Confidence 99999999999999999999999865210 000110000 0 011111100 011122455543221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHh
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (722)
.. .........+++++|++|||||||.||||+++|+++.+.+.+....+++.+++++++..|+.+. ..+
T Consensus 162 ~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~-------~~~ 230 (552)
T PRK09274 162 AA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFAL-------FGP 230 (552)
T ss_pred cc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHh-------hhh
Confidence 11 1122234467899999999999999999999999999988888788899999999888776543 234
Q ss_pred hcCCEEEEecC------CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHh
Q 004952 420 LNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (722)
Q Consensus 420 ~~G~~lv~~~~------~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 493 (722)
..|+++++.+. ..++..+++.|+++++|+++++|++++.|.+.......++++||.+++||+++++++.+++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~ 310 (552)
T PRK09274 231 ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRA 310 (552)
T ss_pred hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHH
Confidence 57889888652 346789999999999999999999999998875545567899999999999999999999988
Q ss_pred hcc-CCcccccccccccccccccCCcC---------CcCccccccccCCCceEEEECC---------CCCcCCCCCCccc
Q 004952 494 KAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILDE---------CGVPYPDDQPCVG 554 (722)
Q Consensus 494 ~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~vld~---------~~~~~p~G~~giG 554 (722)
.++ +++++|.||+||++.++...... ......++|+|+++++++|+|+ +++++|.|+. |
T Consensus 311 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~--G 388 (552)
T PRK09274 311 MLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI--G 388 (552)
T ss_pred HcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCe--e
Confidence 876 47999999999998644332211 1112247899999999999984 5678999985 9
Q ss_pred eEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHH
Q 004952 555 EVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629 (722)
Q Consensus 555 el~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~ 629 (722)
||++. .||++ +++.|...|..++ .|.+||+|||+|++|+||+|+++||.||+||++|++|+|.|||+
T Consensus 389 el~v~g~~~~~GY~~------~~~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 389 EIVVAGPMVTRSYYN------RPEATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred EEEEecCcccccccC------ChHHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 99993 45555 4556665554332 23369999999999999999999999999999999999999999
Q ss_pred HHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc---CC-CeeecCCCCCC--CCchh
Q 004952 630 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL---NP-LFKVVPEFPRT--ASNKL 703 (722)
Q Consensus 630 ~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~---~p-~~~~v~~lP~t--~~GKv 703 (722)
+|. +||+|.+|+|++++++. + +.++++|++.++...+.++++++|++.+..+. .| .++++++||+| +||||
T Consensus 461 ~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi 537 (552)
T PRK09274 461 IFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKI 537 (552)
T ss_pred HHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccc
Confidence 995 99999999999998763 4 68899999988766666778888888887764 44 35589999999 79999
Q ss_pred hHHHHHHHHhhhhh
Q 004952 704 LRRVLRDQIKHELS 717 (722)
Q Consensus 704 dR~~L~~~~~~~~~ 717 (722)
||++|++++.+.++
T Consensus 538 ~r~~L~~~~~~~~~ 551 (552)
T PRK09274 538 FREKLAVWAAKQLK 551 (552)
T ss_pred cHHHHHHHHHHhhc
Confidence 99999999887654
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=579.23 Aligned_cols=487 Identities=25% Similarity=0.293 Sum_probs=403.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+++.+. ++||+||.+++.++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 15 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 86 (513)
T PRK07656 15 ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86 (513)
T ss_pred HHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 367899999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+.++.+++..++++++++++++++... +.........+. ..+++...... ........+|.++......
T Consensus 87 ~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 156 (513)
T PRK07656 87 TRYTADEAAYILARGDAKALFVLGLFL------GVDYSATTRLPALEHVVICETEED--DPHTEKMKTFTDFLAAGDP-- 156 (513)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhH------HHHHHHHhccCCccEEEEEcCccc--ccCccccccHHHHHhcCCC--
Confidence 999999999999999999999987532 111122222222 11222111110 0011123456666543321
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G 422 (722)
........++++++++|||||||.||+|.++|+++.+.+......+++++++++++..|+.|++++ ..++.++..|
T Consensus 157 ---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 233 (513)
T PRK07656 157 ---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233 (513)
T ss_pred ---CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcC
Confidence 112334577899999999999999999999999999888887788899999999999999999987 4578999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++..+++|
T Consensus 234 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
T PRK07656 234 ATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT 312 (513)
T ss_pred ceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence 9998865 467889999999999999999999999999876655667899999999999999999999888775338999
Q ss_pred cccccccccccccCCcCCcC--ccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 503 SCGGTELSSAYIQGSLLQPQ--AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~--~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
.||+||++++...+...... ...++|+|++++.++|+|++++++|.|+. |||++. .||++ ++..+
T Consensus 313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~ 384 (513)
T PRK07656 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKGYYD------DPEAT 384 (513)
T ss_pred EEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhhhcC------CHHHH
Confidence 99999998765544432222 25789999999999999999999999985 999993 45554 33445
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
...|.. ..||+|||+|++++||.++++||.||+||++|.+|+|.|||++|. ++|+|.+++|++.+++..| +.
T Consensus 385 ~~~~~~------~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g-~~ 456 (513)
T PRK07656 385 AAAIDA------DGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG-EV 456 (513)
T ss_pred hhhhcc------CCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC-ce
Confidence 545432 239999999999999999999999999999999999999999995 9999999999999988777 88
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+++||+.+++...+.++++++++++||.+++|. ++++++||+|++||++|++|++
T Consensus 457 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 457 GKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 999999987666777899999999999999994 5589999999999999999975
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=575.71 Aligned_cols=466 Identities=22% Similarity=0.234 Sum_probs=385.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
++++||++|+++.+. ++||+||.++++++|++|.+...+|++|+|+++|++++++++|||+++|++++|+++
T Consensus 11 a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 82 (487)
T PRK07638 11 ASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDI 82 (487)
T ss_pred HHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc
Confidence 468999999998776 999999999999999999988348999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
.++.+++.++++++++++++++....... . .....++.+. .+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~------~----~~~~~~~~~~---------------~~~~~~~~~~~---- 133 (487)
T PRK07638 83 KWKQDELKERLAISNADMIVTERYKLNDL------P----DEEGRVIEID---------------EWKRMIEKYLP---- 133 (487)
T ss_pred cCCHHHHHHHHHhCCCCEEEEecccccch------h----hccceEEEeh---------------hhhhhhhhccc----
Confidence 99999999999999999999987432110 0 0011111111 11111111110
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEE
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~l 425 (722)
.........+++++|+|||||||.||||+++|++++..+......+++.++|+++...++.|+.+++.++.++..|+++
T Consensus 134 -~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~ 212 (487)
T PRK07638 134 -TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTV 212 (487)
T ss_pred -cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEE
Confidence 1111223357789999999999999999999999988888777788899999999999999998888889999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
++.+ ..++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|+.++.+...++...+++++++|.||
T Consensus 213 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG 287 (487)
T PRK07638 213 HLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYG 287 (487)
T ss_pred EEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEec
Confidence 9886 5688899999999999999999999999988632 1 345666788999999999999998888899999999
Q ss_pred ccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccccee
Q 004952 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFR 580 (722)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~ 580 (722)
+||++..+............++|+|++++.++|+|++|+++|.|+. |||++. .||++ +++.+...+
T Consensus 288 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~- 358 (487)
T PRK07638 288 ASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMGYII------GGVLARELN- 358 (487)
T ss_pred CCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceeeecC------CHHHHhhhc-
Confidence 9999876544433333456789999999999999999999999985 999983 34444 333333322
Q ss_pred ccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEE
Q 004952 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (722)
Q Consensus 581 ~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~v 660 (722)
..+||+|||+|++++||+++++||+||+||++|.+|+|.|||++|. +||+|.+|+|++.+++..| +.+++++
T Consensus 359 ------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v 430 (487)
T PRK07638 359 ------ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAII 430 (487)
T ss_pred ------cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEEE
Confidence 1239999999999999999999999999999999999999999995 9999999999999998777 7888888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+. ..+.++++++++++|+.+++|. ++++++||+|++||++|++|++++.+.
T Consensus 431 ~~----~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 431 KG----SATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred EC----CCCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence 74 2456899999999999999994 558999999999999999999987764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=573.15 Aligned_cols=474 Identities=21% Similarity=0.228 Sum_probs=394.2
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+|+.+||++|+++++. .+||+||.++++++|++|++ . +++||+|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 11 RAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred HHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 3478999999998766 99999999999999999986 5 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+++.++.+++..++++++++++++++... +....+...... ..+.+. ++.++.....
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~- 140 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQ------NMALSMQKVSYVQRVISIT---------------SLKEIEDRKI- 140 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHH------HHHHHhhhccCcceEEEec---------------chHhhhccCC-
Confidence 99999999999999999999999987542 111111111111 111111 1222222111
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhh
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (722)
.......++++++++|||||||.||+|+++|+++..........+++.++|+++...|+.|..++ +.++.++.
T Consensus 141 ------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 214 (496)
T PRK06839 141 ------DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214 (496)
T ss_pred ------CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHh
Confidence 11123456899999999999999999999999987766666667788999999999999998887 44678899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+ ..++..++++++++++|++.++|++++.|+........+++++|.+++||++++++..+++... ++++
T Consensus 215 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~ 291 (496)
T PRK06839 215 AGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLF 291 (496)
T ss_pred cCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCee
Confidence 999998865 5688899999999999999999999999998766556678999999999999999998888775 6899
Q ss_pred cccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccc
Q 004952 501 IESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (722)
++.||+||++.++..... ......+++|+|++++.++|+|++++++|.|+. |||+|. +||++ +++.
T Consensus 292 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 363 (496)
T PRK06839 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMKEYWN------RPDA 363 (496)
T ss_pred EeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcchhhcC------ChHH
Confidence 999999999864433222 223456789999999999999999999999985 999993 34444 4445
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
++..|. +| ||+|||++++++||.++++||.||+||++|.+|+|.|||++|. .+|+|.+++|++.+++..| +
T Consensus 364 ~~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~ 434 (496)
T PRK06839 364 TEETIQ-----DG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-E 434 (496)
T ss_pred HHHHHc-----CC--CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-c
Confidence 554442 12 9999999999999999999999999999999999999999995 9999999999999998887 8
Q ss_pred EEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
.++++|+++++...+.++++++++++|+.+++| .++++++||+|++||++|++|+++.++
T Consensus 435 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 435 IPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 999999998876777789999999999999999 566899999999999999999987754
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=590.60 Aligned_cols=489 Identities=19% Similarity=0.195 Sum_probs=380.3
Q ss_pred CCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec-C
Q 004952 187 RKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-A 264 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl-~ 264 (722)
+.+||++|+++.+.. ...+..+.+||+||+++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|+ +
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~ 111 (631)
T PRK07769 32 KVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFD 111 (631)
T ss_pred HhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCC
Confidence 578999999975421 01123458999999999999999997669999999999999999999999999999999999 5
Q ss_pred CCCC--HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC----CcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 265 DSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 265 p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
+..+ .+++.+++++++++++|+++... +.........+ ..++.+... .+..
T Consensus 112 ~~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-- 168 (631)
T PRK07769 112 PAEPGHVGRLHAVLDDCTPSAILTTTDSA------EGVRKFFRARPAKERPRVIAVDAV---------------PDEV-- 168 (631)
T ss_pred CCccchHHHHHHHHHhCCCCEEEEChHHH------HHHHHHHhhccccccceEEEcccc---------------cccc--
Confidence 6665 68999999999999999987532 11111111111 111111100 0000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (722)
.. ........++++++|+|||||||.||||+++|+++...+......+++.+++++++..|++|++++..++.+
T Consensus 169 -~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~ 242 (631)
T PRK07769 169 -GA-----TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLP 242 (631)
T ss_pred -cc-----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHH
Confidence 00 011123457899999999999999999999999998888777777889999999999999999999888888
Q ss_pred hhcCCEEEEecC-CC--ChhhHHHHHHHhCC---cEEechhHHHHHHHhcC---C--CCCCCccceeEEEeecCCCCcch
Q 004952 419 FLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKAWRNTN---C--LEGLDWTKIRSFASTGETSNVDD 487 (722)
Q Consensus 419 L~~G~~lv~~~~-~~--~~~~l~~~i~~~~v---t~l~~~P~~l~~l~~~~---~--~~~~~l~~Lr~i~~~Ge~l~~~~ 487 (722)
++.|+++++++. .. ++..+++.++++++ |++..+|+++..+.... . ....++++||.+++||+++++++
T Consensus 243 ~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~ 322 (631)
T PRK07769 243 ALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPAS 322 (631)
T ss_pred HhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHH
Confidence 899999998854 22 77889999999886 78999999887766421 1 11457899999999999999999
Q ss_pred HHHHHhhcc-----CCcccccccccccccccccCCcCCc--------------------------CccccccccCCCceE
Q 004952 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (722)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~ 536 (722)
.+++.+.++ ...++|.||+||++.+++....... ....++|+|++++.+
T Consensus 323 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~ 402 (631)
T PRK07769 323 MRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWA 402 (631)
T ss_pred HHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEE
Confidence 988887652 2469999999999765443221110 012478999999999
Q ss_pred EEEC-CCCCcCCCCCCccceEEE-----ecccCCCccccccccccccceecccc-----------CCCceecccCceEEE
Q 004952 537 VILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----------YKGMCLRRHGDIIKR 599 (722)
Q Consensus 537 ~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----------~~g~r~yrTGDl~~~ 599 (722)
+|+| ++|+++|.|+. |||++ ..||++ +++.|++.|...+. ..+.+||||||+|++
T Consensus 403 ~ivd~~~g~~~~~ge~--GEl~v~gp~v~~GY~~------~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~ 474 (631)
T PRK07769 403 VIVDPETASELPDGQI--GEIWLHGNNIGTGYWG------KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474 (631)
T ss_pred EEEcCCCCcCCCCCCE--EEEEecCCCccccccC------ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE
Confidence 9999 57999999995 99999 345554 56677778764211 123469999999999
Q ss_pred ecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce--eEEEeecC-------------------CCCCceEEEE
Q 004952 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSP-------------------AGGGPEVLVI 658 (722)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~--~~vv~~~~-------------------~~~g~~~l~a 658 (722)
+ ||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|+++++ +..| +.+++
T Consensus 475 ~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e~~~a 552 (631)
T PRK07769 475 F-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-EQLVI 552 (631)
T ss_pred E-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-ccEEE
Confidence 5 999999999999999999999999999999534899998 89999988 4456 88999
Q ss_pred EEEecCCC-CCCHHHHHHHHHHHHHh-hc-CCC-eeecC--CCCCCCCchhhHHHHHHHHhh
Q 004952 659 FVVLKKGF-TSQPDKLKMIFSKAIQS-KL-NPL-FKVVP--EFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 659 ~vv~~~~~-~~~~~~l~~~l~~~l~~-~~-~p~-~~~v~--~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+|++.++. ..+.++|.++++++|.. +. .|+ +.+++ +||+|++|||+|++|++.+.+
T Consensus 553 ~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 553 VAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred EEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 99988763 46778999999999996 45 474 44665 799999999999999988754
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=581.00 Aligned_cols=498 Identities=22% Similarity=0.269 Sum_probs=399.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 42 ~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 113 (573)
T PRK05605 42 VARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHN 113 (573)
T ss_pred HHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 368999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc-EEEEcCCCC-C-------------------CCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGN-D-------------------VGI 323 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-------------------~~~ 323 (722)
|.++.+++.+++++++++++|+++... .....+....... ++.+..... . ...
T Consensus 114 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (573)
T PRK05605 114 PLYTAHELEHPFEDHGARVAIVWDKVA------PTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALT 187 (573)
T ss_pred cCCCHHHHHHHHhccCCcEEEechhhH------HHHHhhhhccccceeEeeecccccccccccccccccccccccccccc
Confidence 999999999999999999999986432 1111111111111 111110000 0 000
Q ss_pred CCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC-C-CCCCEEE
Q 004952 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYC 401 (722)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~-~-~~~d~~l 401 (722)
....+...|.++........ ..........++++++++|||||||.||||+++|+++...+......+. + ..+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (573)
T PRK05605 188 GPAPGTVPWETLVDAAIGGD-GSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVL 266 (573)
T ss_pred cCCCcceeHHHHhhcccccc-ccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEE
Confidence 01123345666554322100 0001223356789999999999999999999999998877664433322 2 3478999
Q ss_pred EecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
+..|+.|..+. ..++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++||
T Consensus 267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg 345 (573)
T PRK05605 267 AALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGA 345 (573)
T ss_pred EecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECC
Confidence 99999988886 45677899999999986 45788999999999999999999999999987665666789999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCC--CCcCCCCCCccceEEE
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL 558 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~--~~~~p~G~~giGel~v 558 (722)
++++++..+++.+.+ ++++++.||+||+++++...........+++|+|++++.++|+|++ ++++|.|+. |||++
T Consensus 346 ~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~--Gel~v 422 (573)
T PRK05605 346 MALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE--GELLV 422 (573)
T ss_pred CcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe--eEEEE
Confidence 999999988887654 5789999999999876555443333445789999999999999976 589999985 99999
Q ss_pred e-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
. .||++ +++.++..|.. | ||+|||+|+++++|+++++||.||++|++|++|+|.|||++|.
T Consensus 423 ~~~~~~~gy~~------~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~- 488 (573)
T PRK05605 423 RGPQVFKGYWN------RPEETAKSFLD-----G--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR- 488 (573)
T ss_pred ecCchhhhhcC------ChhHhhhcccC-----C--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH-
Confidence 3 34443 45556656542 3 9999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
.||.|.+++|++.++...+ +.+++++++.++...+.++|+++++++|+.+++|. ++++++||+|.+||++|++|++++
T Consensus 489 ~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~ 567 (573)
T PRK05605 489 EHPGVEDAAVVGLPREDGS-EEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREEL 567 (573)
T ss_pred hCcccceEEEEeeecccCC-eEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHH
Confidence 9999999999999988777 89999999988767788999999999999999995 558999999999999999999999
Q ss_pred hhhhh
Q 004952 713 KHELS 717 (722)
Q Consensus 713 ~~~~~ 717 (722)
.++++
T Consensus 568 ~~~~~ 572 (573)
T PRK05605 568 LEKLG 572 (573)
T ss_pred HHHhc
Confidence 77654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-65 Score=576.51 Aligned_cols=508 Identities=20% Similarity=0.224 Sum_probs=394.4
Q ss_pred CCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004952 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (722)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s 243 (722)
+.|......+.....+.+. ++++||++|+++.+.. +.+||+||.++++++|++|.+. +++||+|+|+++|+
T Consensus 7 ~~~~~~~~~~~l~~~l~~~--a~~~p~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~ 78 (534)
T PRK05852 7 AAPMASDFGPRIADLVEVA--ATRLPEAPALVVTADR------IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSN 78 (534)
T ss_pred ccchhhhhcccHHHHHHHH--HHhCCCCcEEEecCCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence 3444333333333444433 3689999999875431 3799999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCC
Q 004952 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (722)
Q Consensus 244 ~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (722)
+++++++|||+++|++++|++|.++.+++.+++++++++++|++........ ....... ...+.+.....
T Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~---- 148 (534)
T PRK05852 79 AEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-----EPTTRWW-PLTVNVGGDSG---- 148 (534)
T ss_pred HHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-----ccccccc-ceeeeeccccc----
Confidence 9999999999999999999999999999999999999999999863211000 0000000 01111111000
Q ss_pred CCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEe
Q 004952 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403 (722)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~ 403 (722)
........ ........ ..........++++++++|||||||.||||+++|+++.+.+......+++.++|++++.
T Consensus 149 -~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 223 (534)
T PRK05852 149 -PSGGTLSV-HLDAATEP---TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAV 223 (534)
T ss_pred -cccccccc-ccccccCC---CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEe
Confidence 00000000 00000000 00001111224778999999999999999999999999888887788899999999999
Q ss_pred cCccccchhH-HHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC--CCCccceeEEEee
Q 004952 404 TNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFAST 479 (722)
Q Consensus 404 ~~~~~~~~~~-~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~~ 479 (722)
.|+.|..++. .++.+++.|+++++++. ..++..+++.|+++++|++.++|+++..|.+..... ..+++++|.++++
T Consensus 224 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~ 303 (534)
T PRK05852 224 MPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSC 303 (534)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEEC
Confidence 9999999884 57888999999888653 446788999999999999999999999998764322 2356899999999
Q ss_pred cCCCCcchHHHHHhhccCCcccccccccccccccccCCcC------C-cCccccccccCCCceEEEECCCCCcCCCCCCc
Q 004952 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL------Q-PQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (722)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (722)
|+++++.+.+++.+.+ ++++++.||+||++..++..... . ....+..|. .++++++|+|++|+++|.|+.
T Consensus 304 G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~- 380 (534)
T PRK05852 304 SAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGAV- 380 (534)
T ss_pred CCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCCCCCCCc-
Confidence 9999999999888776 57899999999998654433221 0 112233444 799999999999999999985
Q ss_pred cceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHH
Q 004952 553 VGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (722)
Q Consensus 553 iGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (722)
|||++. .||++ +++.|++.|.. | ||+|||+|++|+||++++.||+||+||++|.+|+|.||
T Consensus 381 -Gel~v~g~~v~~gY~~------~~~~t~~~~~~-----g--~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~i 446 (534)
T PRK05852 381 -GEVWLRGTTVVRGYLG------DPTITAANFTD-----G--WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERV 446 (534)
T ss_pred -eEEEEecCcccchhcC------CcccchhhhcC-----C--CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHH
Confidence 999983 45554 55566666642 2 99999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHH
Q 004952 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRR 706 (722)
Q Consensus 628 E~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~ 706 (722)
|++|. .||+|.+|+|++++++..+ +.++++|+.+++...+.+++.++++++||.+++| .++++++||+|++||++|+
T Consensus 447 E~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~ 524 (534)
T PRK05852 447 EGVLA-SHPNVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRR 524 (534)
T ss_pred HHHHH-hCCCeeeEEEEecCCcCcC-ceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHH
Confidence 99995 9999999999999988777 8899999987765577899999999999999999 5669999999999999999
Q ss_pred HHHHHHhh
Q 004952 707 VLRDQIKH 714 (722)
Q Consensus 707 ~L~~~~~~ 714 (722)
+|++.+.+
T Consensus 525 ~L~~~~~~ 532 (534)
T PRK05852 525 AVAEQFGH 532 (534)
T ss_pred HHHHHhcc
Confidence 99998854
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=573.21 Aligned_cols=490 Identities=21% Similarity=0.245 Sum_probs=403.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++|+++|+.+.++ .+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++
T Consensus 11 ~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 11 ARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 57899999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
.++.+++..+++++++++++++.... +.+.......+. ..+.+...... .........|+++......
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 152 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAHA--SEGGGESPSWPKLLALGDA-- 152 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCcccc--cCCccccccHHHhhccccc--
Confidence 99999999999999999999986432 212222222211 12222211110 0111233456665543221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
........+++++++|||||||.||||+++|+++...+......+++.++|++++..|++|++++..++.++..|+
T Consensus 153 ----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 228 (515)
T TIGR03098 153 ----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGA 228 (515)
T ss_pred ----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCC
Confidence 1223345688999999999999999999999999888887777788999999999999999999988999999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+.+.++++++|++.++|+++..|.+... ...+++++|.+++||+++++.+.+.+.+.++++++++.
T Consensus 229 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 306 (515)
T TIGR03098 229 TVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM 306 (515)
T ss_pred EEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence 999886 4678899999999999999999999999987532 22457899999999999999999999888878889999
Q ss_pred ccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (722)
||+||++..............+++|+|++++.++|+|+++++++.|+. ||+++ ..||++ +++.++..
T Consensus 307 YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~gy~~------~~~~~~~~ 378 (515)
T TIGR03098 307 YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAMGYWN------DPEKTAER 378 (515)
T ss_pred eccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhccccC------Cchhhhhh
Confidence 999998754333222223456789999999999999999999999985 99998 356665 44456666
Q ss_pred eecccc-----CCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 579 FRGMPM-----YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 579 f~~~p~-----~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
|...+. ..+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||.|.+|+|++++++..|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g- 456 (515)
T TIGR03098 379 FRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG- 456 (515)
T ss_pred hhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCcccC-
Confidence 655432 123458999999999999999999999999999999999999999995 9999999999999998877
Q ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+.++++++...+...+.++++++++++|+.++.|. ++++++||+|++||++|++|++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 457 QAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 88999998766666778899999999999999995 5589999999999999999964
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=579.95 Aligned_cols=468 Identities=18% Similarity=0.151 Sum_probs=362.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
++++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+++|++++ ++|
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~ 85 (525)
T PRK05851 12 MTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILP 85 (525)
T ss_pred hcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCC
Confidence 478899999998653 2356999999999999999999988 8999999999999999999999999999875 444
Q ss_pred C--------CCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhc
Q 004952 266 S--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (722)
Q Consensus 266 ~--------~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (722)
. ...+++.+++++++++++|+++... ..+..... . +.+. .+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~-~-~~~~---------------~~~~~~~ 139 (525)
T PRK05851 86 GPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVDS-S-VTVH---------------DLATAAH 139 (525)
T ss_pred CCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhhc-c-cccc---------------ccccccc
Confidence 2 2345667789999999999986432 11111000 0 0000 0000000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCC-CCCEEEEecCccccchhHHHH
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILF 416 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~ 416 (722)
.. .. .+.....+++++||+|||||||.||||+++|+++.+.+.+....++++ ++|+++++.|++|+++++.++
T Consensus 140 ~~----~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 213 (525)
T PRK05851 140 TN----RS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLL 213 (525)
T ss_pred cc----cc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHH
Confidence 00 00 001123578999999999999999999999999999888887888888 899999999999999998899
Q ss_pred HHhhcCCEEEEecCC-C--ChhhHHHHHHHhCCcEEechhHHHHHHHhcCC-CCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 417 SSFLNGATLALYQGS-P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 417 ~~L~~G~~lv~~~~~-~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
.+++.|+++++.+.. + ++..+++.++++++|++..+|.++..+..... ....++++||.+++||+++++++.+++.
T Consensus 214 ~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 293 (525)
T PRK05851 214 TAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFA 293 (525)
T ss_pred HHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHH
Confidence 999999999997631 2 56789999999999988766666665543321 2345678999999999999999988877
Q ss_pred hhc-----cCCcccccccccccccccccCCcC--------------CcCccccccccCCCceEEEECCCC-CcCCCCCCc
Q 004952 493 SKA-----WYNAIIESCGGTELSSAYIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPC 552 (722)
Q Consensus 493 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~~~vld~~~-~~~p~G~~g 552 (722)
+.+ +..+++|.||+||++.+++..... .....+++|+|++|++++|+|+++ .++|.|+.
T Consensus 294 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~- 372 (525)
T PRK05851 294 TAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREI- 372 (525)
T ss_pred HHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCe-
Confidence 642 123599999999998654432211 012346899999999999999776 46899985
Q ss_pred cceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHH
Q 004952 553 VGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (722)
Q Consensus 553 iGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (722)
|||++. .||++++ +.+ .++||+|||+|+++ +|+|+|+||+||+||++|+||+|.||
T Consensus 373 -GEl~v~g~~~~~GY~~~~------~~~-----------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 373 -GEIEIRGASMMSGYLGQA------PID-----------PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred -EEEEEecCchhhccccCC------ccC-----------CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 999993 4555532 111 12499999999986 89999999999999999999999999
Q ss_pred HHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCC-eeecC--CCCCCCCch
Q 004952 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK--LNPL-FKVVP--EFPRTASNK 702 (722)
Q Consensus 628 E~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~--~~p~-~~~v~--~lP~t~~GK 702 (722)
|++|. +||+|.+|+|++++++..+ +.+.++|+... ...+.++++++++++|+.+ ++|. +++++ +||+|+|||
T Consensus 434 E~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GK 510 (525)
T PRK05851 434 ERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGK 510 (525)
T ss_pred HHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchH
Confidence 99995 9999999999999987776 66777766542 1234578889999999998 8994 55887 899999999
Q ss_pred hhHHHHHHHHhh
Q 004952 703 LLRRVLRDQIKH 714 (722)
Q Consensus 703 vdR~~L~~~~~~ 714 (722)
|+|++|++.+++
T Consensus 511 i~r~~L~~~~~~ 522 (525)
T PRK05851 511 LRRLAVKRSLEA 522 (525)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=577.41 Aligned_cols=505 Identities=19% Similarity=0.218 Sum_probs=405.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+.+ +.+||+||.++++++|++|.+. +++||+|++++++++++++++|||+++|++++|++
T Consensus 28 ~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~ 101 (558)
T PRK12583 28 VARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNIN 101 (558)
T ss_pred HHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecC
Confidence 3689999999885432 3899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc-------------CCCcEEEEcCCCCCCCCCCCCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------------APLKAIVLPAIGNDVGIPLREQDLS 331 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (722)
|.++.+++.+++++++++++++++..... +........... .+....++..... .......
T Consensus 102 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 175 (558)
T PRK12583 102 PAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-----PPPGFLA 175 (558)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-----CCccccc
Confidence 99999999999999999999998643211 111111111110 0111111111100 0112234
Q ss_pred HHHHhcccCCCC-CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccc
Q 004952 332 WKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (722)
Q Consensus 332 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (722)
|++......... ...........++++++++|||||||.||||.++|+++.+.+......+++.++|+++...|+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 544433221100 0001111234578899999999999999999999999988888777788999999999999999998
Q ss_pred hh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHH
Q 004952 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (722)
Q Consensus 411 ~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~ 489 (722)
+. +.++.++..|++++++....++..+++.++++++|++.++|+++..++........++++||.+++||+++++++.+
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~ 335 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMR 335 (558)
T ss_pred hHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHH
Confidence 87 56788899999999876667888999999999999999999999988876554556789999999999999999999
Q ss_pred HHHhhccCCcccccccccccccccccCCcC--CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----ccc
Q 004952 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLY 562 (722)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y 562 (722)
++.+.++..++++.||+||++.++...... ......++|+|++++.++|+|+++++++.|+. |||++. .||
T Consensus 336 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy 413 (558)
T PRK12583 336 RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCTRGYSVMKGY 413 (558)
T ss_pred HHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEEEeCccchhh
Confidence 998888777899999999999765443221 12345789999999999999999999999985 999983 445
Q ss_pred CCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeE
Q 004952 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642 (722)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~ 642 (722)
++ +++.+...|.. .+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||+|.+++
T Consensus 414 ~~------~~~~~~~~~~~------~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~ 480 (558)
T PRK12583 414 WN------NPEATAESIDE------DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAVADVQ 480 (558)
T ss_pred cC------ChHHHHhhcCC------CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCeeEEE
Confidence 44 44445444432 249999999999999999999999999999999999999999995 899999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 643 vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
|++++++..+ +.++++++..++...+..+++++++++||.+++|. ++.+++||+|++||++|++|+++..++++.
T Consensus 481 v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~~~ 556 (558)
T PRK12583 481 VFGVPDEKYG-EEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEELAL 556 (558)
T ss_pred EEeeecCCCC-cEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhcCC
Confidence 9999988777 88999999887666677899999999999999995 558999999999999999999998776654
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=579.16 Aligned_cols=504 Identities=20% Similarity=0.235 Sum_probs=406.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 26 ~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 99 (559)
T PRK08315 26 AARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTIN 99 (559)
T ss_pred HHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecC
Confidence 4689999999985432 3899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC-------------CC--cEEEEcCCCCCCCCCCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------------PL--KAIVLPAIGNDVGIPLREQD 329 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~ 329 (722)
|.++.+++..++++++++++++++..... ............. +. ..+.+.. . ...+.
T Consensus 100 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~ 171 (559)
T PRK08315 100 PAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD--E-----KHPGM 171 (559)
T ss_pred ccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeecc--c-----CCccc
Confidence 99999999999999999999998753210 0011111111110 00 1111110 0 01123
Q ss_pred CCHHHHhcccCCCC-CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccc
Q 004952 330 LSWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408 (722)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (722)
..+.++........ ...........+++++|++|||||||.||||.++|+++...+......++++++|+++...|+.|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 251 (559)
T PRK08315 172 LNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYH 251 (559)
T ss_pred ccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHH
Confidence 45555544321100 00011122345788999999999999999999999999988888778889999999999999998
Q ss_pred cchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcch
Q 004952 409 VMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (722)
Q Consensus 409 ~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~ 487 (722)
..+. +.++.++..|+++++.....++..+++.++++++|++.++|+++..++........++++||.+++||+++++++
T Consensus 252 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~ 331 (559)
T PRK08315 252 CFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEV 331 (559)
T ss_pred HHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHH
Confidence 8887 568899999999997766678889999999999999999999999988766555567899999999999999999
Q ss_pred HHHHHhhccCCcccccccccccccccccCCcCC--cCccccccccCCCceEEEECCC-CCcCCCCCCccceEEE-----e
Q 004952 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-----F 559 (722)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v-----~ 559 (722)
.+.+.+.++..+++|.||+||++.+++...... .....++|+|++++.++|+|++ ++++|.|+. |||+| .
T Consensus 332 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GEl~v~g~~~~ 409 (559)
T PRK08315 332 MKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GELCTRGYSVM 409 (559)
T ss_pred HHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eEEEEECchhh
Confidence 988888776667999999999986544333222 2345789999999999999987 999999996 99998 3
Q ss_pred cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcc
Q 004952 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (722)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (722)
.||++ +++.++..|.. .+||+|||+|++++||.++|+||.||+||++|+||++.|||++|. .+|+|.
T Consensus 410 ~gy~~------~~~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~~~v~ 476 (559)
T PRK08315 410 KGYWN------DPEKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-THPKIQ 476 (559)
T ss_pred hhhcC------ChhHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hCCCce
Confidence 46665 44455555532 239999999999999999999999999999999999999999995 999999
Q ss_pred eeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 640 ~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+++|++++++..+ +.+++||++.++...+.++++++++++||.|++|. ++++++||+|+|||++|++|++++......
T Consensus 477 ~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~ 555 (559)
T PRK08315 477 DVQVVGVPDEKYG-EEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGL 555 (559)
T ss_pred EEEEEecCCCCCC-eEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhch
Confidence 9999999988766 88999999887666677899999999999999995 558999999999999999999987776544
Q ss_pred c
Q 004952 719 R 719 (722)
Q Consensus 719 ~ 719 (722)
+
T Consensus 556 ~ 556 (559)
T PRK08315 556 Q 556 (559)
T ss_pred h
Confidence 3
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-65 Score=574.49 Aligned_cols=483 Identities=20% Similarity=0.225 Sum_probs=393.7
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++||++|+++.+. ++||+||.++++++|+.|++. +++||+|++++++++++++++|||+++|++++|+++
T Consensus 18 ~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~ 89 (528)
T PRK07470 18 RRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89 (528)
T ss_pred HHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCc
Confidence 68999999998766 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
.++.+++.+++++++++.++++++... ....+...... ..+.+.. . .....+.++......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~-- 152 (528)
T PRK07470 90 RQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPDLTHVVAIGG--A-------RAGLDYEALVARHLG-- 152 (528)
T ss_pred cCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCcCceEEEeCC--C-------cccccHHHHHhcCCC--
Confidence 999999999999999999999975421 11112111111 1222211 1 012356665543221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh--cCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
.........++++++++|||||||.||||+++|+++...+...... .+..++|+++...|++|+.++..++ .++.
T Consensus 153 --~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~ 229 (528)
T PRK07470 153 --ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVAR 229 (528)
T ss_pred --CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhc
Confidence 1122234567899999999999999999999999987654433222 2567889999999999999887554 6788
Q ss_pred CCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 422 GATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 422 G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
|+++++++. ..++..+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++....++...+ +.++
T Consensus 230 g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~ 308 (528)
T PRK07470 230 GAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVL 308 (528)
T ss_pred CceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHH
Confidence 888877753 45788899999999999999999999999887655556789999999999999999888877665 4689
Q ss_pred cccccccccccccccCCcC-------CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 501 IESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
++.||+||++..+...... .....+++|.|++++.++|+|++|++++.|+. |||++. .||++
T Consensus 309 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~gy~~---- 382 (528)
T PRK07470 309 VQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAGYYN---- 382 (528)
T ss_pred HHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchhhcC----
Confidence 9999999998654433211 12234688999999999999999999999985 999983 45554
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.++..|. +.||+|||+|++++||+++++||+||+||++|+||+|.|||++|. ++|+|.+|+|++.++
T Consensus 383 --~~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~ 452 (528)
T PRK07470 383 --NPEANAKAFR-------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGVPD 452 (528)
T ss_pred --CHHHHHhhhc-------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEeccC
Confidence 4445555553 139999999999999999999999999999999999999999995 999999999999998
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+..| +.++++++..++...+.++++++|+++||.+++|. ++++++||+|+|||++|+.|++++++.
T Consensus 453 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 453 PVWG-EVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred cccC-ceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 8777 78899999887766778899999999999999994 668999999999999999999987664
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=574.43 Aligned_cols=489 Identities=19% Similarity=0.201 Sum_probs=393.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++...+ +.+||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 38 a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 111 (546)
T PLN02330 38 AELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGAN 111 (546)
T ss_pred hhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCC
Confidence 3678999999874321 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.+++++++++++++++...... .......+++.... ......|.+++..... .
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~--~ 172 (546)
T PLN02330 112 PTALESEIKKQAEAAGAKLIVTNDTNYGKV----------KGLGLPVIVLGEEK-------IEGAVNWKELLEAADR--A 172 (546)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEccchhhhH----------hhcCCcEEEecCCC-------CCCcccHHHHHhhccc--c
Confidence 999999999999999999999997543211 11112233332111 1123457776654322 1
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC--CCCCCEEEEecCccccchhH-HHHHHhhc
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~~~~L~~ 421 (722)
..........++++++++|||||||.||||+++|+++...+......++ ....++++...|+.|.++.. .++.+|..
T Consensus 173 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~ 252 (546)
T PLN02330 173 GDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRN 252 (546)
T ss_pred CcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhc
Confidence 1111223345689999999999999999999999998876543221111 22345788889999988874 56788999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCcc--ceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~--~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
|+++++.+ ..++..+++.++++++|++.++|+++..|+........+++ ++|.+++||+++++++.+++.+.+++++
T Consensus 253 g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~ 331 (546)
T PLN02330 253 KGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQ 331 (546)
T ss_pred CCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCe
Confidence 99999886 56788999999999999999999999999876544444444 4799999999999999999998888899
Q ss_pred ccccccccccccccccCCcCC----cCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCcccc
Q 004952 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRL 569 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~ 569 (722)
+++.||+||++++........ .....++|+|++|++++|+| ++++++|.|+. |||++. .||++
T Consensus 332 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~gy~~----- 404 (546)
T PLN02330 332 VQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQGYYN----- 404 (546)
T ss_pred EEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhhhcc-----
Confidence 999999999975443321111 12345899999999999999 57899999995 999983 45555
Q ss_pred ccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCC
Q 004952 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (722)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~ 649 (722)
+++.+++.|. .++||+|||+|++++||+++++||.||+||++|++|+|.|||++|. +||+|.+++|++++++
T Consensus 405 -~~~~~~~~~~------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~ 476 (546)
T PLN02330 405 -NKEETDRTID------EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLPDE 476 (546)
T ss_pred -Cccchhhhcc------CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEecccc
Confidence 4445555543 2349999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
..| +.++++|++.++...+.++++++++++|+.|+.|. ++.+++||+|++||++|++|++++...-
T Consensus 477 ~~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 477 EAG-EIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred ccC-ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence 777 88999999887666677899999999999999995 6689999999999999999999987653
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-65 Score=582.38 Aligned_cols=497 Identities=17% Similarity=0.143 Sum_probs=384.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|++++++ .+||+||.++++++|.+|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 47 a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~ 118 (600)
T PRK08279 47 AARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN 118 (600)
T ss_pred HHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 368999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+.++.+++.+++++++++++|++++.. +....+...... ..+.+...... .....+.++.......+
T Consensus 119 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 186 (600)
T PRK08279 119 TQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGAP 186 (600)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccCC
Confidence 999999999999999999999987532 112222221111 22222111100 00123334332221100
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHH-HHHHhhcC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G 422 (722)
...........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++..|++|.+++.. ++.++..|
T Consensus 187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 266 (600)
T PRK08279 187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAG 266 (600)
T ss_pred ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcC
Confidence 11111223345689999999999999999999999999999988888899999999999999999999854 45667788
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+ ..++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++.+++...++...++|
T Consensus 267 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~ 343 (600)
T PRK08279 267 ATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE 343 (600)
T ss_pred cEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence 8887765 5678889999999999999999999999987654333345677754 477899999999888877667999
Q ss_pred cccccccccccccCCcCCcCccccccccCC----Cce---------EEEECCCC--CcCCCCCCccceEEE---ecccCC
Q 004952 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAG---------LVILDECG--VPYPDDQPCVGEVGL---FPLYLG 564 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~~---------~~vld~~~--~~~p~G~~giGel~v---~~~y~~ 564 (722)
.||+||++..+... ....+++|++.+ +.. ..|.|.++ .+++.|+. ||+++ +++.+.
T Consensus 344 ~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~~i~~~~~~~ 417 (600)
T PRK08279 344 FYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIGRITDRGPFD 417 (600)
T ss_pred eecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEEEecCccccc
Confidence 99999988643321 123345666555 332 23344333 35788885 99984 233222
Q ss_pred CccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEE
Q 004952 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (722)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv 644 (722)
+|.++..|+..|..+++.++.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+
T Consensus 418 ---GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p~V~~a~v~ 493 (600)
T PRK08279 418 ---GYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFPGVEEAVVY 493 (600)
T ss_pred ---ccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCCCcceEEEE
Confidence 23466677777776666666789999999999999999999999999999999999999999996 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+++++..+....+++++..++...+.++++++|+++||.|++|. ++++++||+|+|||++|++|++++.+.
T Consensus 494 gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 494 GVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred EeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 99876533245666676665556778999999999999999995 558999999999999999999987665
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=566.40 Aligned_cols=476 Identities=21% Similarity=0.218 Sum_probs=395.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||.||.++++++|.+|.+. +++|++|++++++++++++++|||+++|++++|++
T Consensus 12 ~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 83 (497)
T PRK06145 12 ARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN 83 (497)
T ss_pred HHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 368899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.+++++++++++++++..... .. .....+.+..... ..+..+.....
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~~-~~~~~~~~~~~~~----------~~~~~~~~~~~---- 138 (497)
T PRK06145 84 YRLAADEVAYILGDAGAKLLLVDEEFDAI----------VA-LETPKIVIDAAAQ----------ADSRRLAQGGL---- 138 (497)
T ss_pred cccCHHHHHHHHHhcCCcEEEEccchhhh----------hh-cccceEEecCccc----------chhHHHhccCC----
Confidence 99999999999999999999998753211 00 0111122211000 01111111000
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (722)
.........++++++++|||||||.||||+++|+++..........+++..+++++...|+.|..++ +..+.+++.|+
T Consensus 139 -~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~ 217 (497)
T PRK06145 139 -EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217 (497)
T ss_pred -CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccC
Confidence 0011123467899999999999999999999999998776666677889999999999999998877 44577899999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.++++++|++.++|++++.++........+++++|.+++|||++++.+.+++.+.+++.++++.
T Consensus 218 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~ 296 (497)
T PRK06145 218 TLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296 (497)
T ss_pred EEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence 999876 4678899999999999999999999999988765555678899999999999999999999888878899999
Q ss_pred ccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||++..++..... .....+++|+|+++++++|+|++++++|.|+. |||++. .||++ +++.++.
T Consensus 297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~Gy~~------~~~~~~~ 368 (497)
T PRK06145 297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTKGYWK------DPEKTAE 368 (497)
T ss_pred ecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhhhhcC------ChHHHHH
Confidence 9999998754433221 22345689999999999999999999999985 999983 45555 4556666
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|.. .||+|||+|+++.||+++++||+||+||++|++|+|.|||+.|. .+|+|.+++|++.+++..+ +.++
T Consensus 369 ~~~~-------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 439 (497)
T PRK06145 369 AFYG-------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERIT 439 (497)
T ss_pred HHhC-------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceEE
Confidence 6642 39999999999999999999999999999999999999999995 9999999999999988777 8899
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
+++++.++...+.++++++++++|+.+++|. ++.+++||+|++||++|++|+++++
T Consensus 440 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 440 AVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 9999987666677899999999999999994 5589999999999999999998765
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=570.24 Aligned_cols=489 Identities=22% Similarity=0.245 Sum_probs=410.5
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++.+|+++|+.+.+. .+||+||.++++++|+.|.+. +++|++|++++++++++++++|||+++|++++|+
T Consensus 15 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~ 86 (521)
T PRK06187 15 GARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI 86 (521)
T ss_pred HHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEec
Confidence 3478999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
++.++.+++..+++.+++++++++.... +.+..+....+. +.+++...... ........+.+++.....
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 87 NIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYEELLAAASD 157 (521)
T ss_pred ccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHHHHhhcCCc
Confidence 9999999999999999999999997532 222333333332 23333221110 112234556666554332
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
........++++++++|||||||.||+|.++|+++.+........+++++++++++.+++.|..++...+.++..
T Consensus 158 -----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 232 (521)
T PRK06187 158 -----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMA 232 (521)
T ss_pred -----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence 122234567889999999999999999999999999888888888999999999999999999988777779999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++++.. ++..+++.++++++|++.++|++++.|.........++++||.+++|||+++++..+++.+.+ +++++
T Consensus 233 G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~ 310 (521)
T PRK06187 233 GAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLV 310 (521)
T ss_pred CCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchh
Confidence 9999998764 888999999999999999999999999988766567789999999999999999999988876 78999
Q ss_pred ccccccccccccccCCcCCc-----CccccccccCCCceEEEECCCCCcCCC--CCCccceEEEe-----cccCCCcccc
Q 004952 502 ESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGLF-----PLYLGASDRL 569 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~~~vld~~~~~~p~--G~~giGel~v~-----~~y~~~~~~~ 569 (722)
|.||+||++.+......... ....++|+|++++.++|+|++++++|. |+. |||++. .+|++
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~v~~~~~~~~y~~----- 383 (521)
T PRK06187 311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV--GEIIVRGPWLMQGYWN----- 383 (521)
T ss_pred eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCe--eEEEEECcchhhhhcC-----
Confidence 99999999865544433222 256789999999999999999999998 774 999993 34443
Q ss_pred ccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCC
Q 004952 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (722)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~ 649 (722)
+++.+.+.|.. + ||+|||+++++++|.+++.||.||+||++|.+|+|.+||+.|. .+|+|.+++|++.+++
T Consensus 384 -~~~~~~~~~~~-----~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~ 454 (521)
T PRK06187 384 -RPEATAETIDG-----G--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVPDE 454 (521)
T ss_pred -CHHHHHHHhhC-----C--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEeccCC
Confidence 34445545532 3 9999999999999999999999999999999999999999995 9999999999999887
Q ss_pred CCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
..+ +.++++++++++...+..+++++++++|+.++.| .++++++||+|++||++|+.|++++.+
T Consensus 455 ~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 455 KWG-ERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred CcC-ceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 777 8999999998876677889999999999999999 566899999999999999999999875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=570.26 Aligned_cols=492 Identities=20% Similarity=0.221 Sum_probs=391.1
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
..+|+++++.+... +..+.+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 96 (539)
T PRK07008 21 RHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINP 96 (539)
T ss_pred hhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 57788888765321 1234899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc--EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
.++.+++.++++++++++++++.... +....+....... .+.+....... . ......+++++......
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~-- 166 (539)
T PRK07008 97 RLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAAHLP-A-GSTPLLCYETLVGAQDG-- 166 (539)
T ss_pred ccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCCccc-c-CCcccccHHHHhcccCC--
Confidence 99999999999999999999987532 1222222222221 12222111100 0 01124556666543221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHH--HHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT--AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
........++++++++|||||||.||||+++|++++... ......+++.++|+++...|++|..+...++.++..
T Consensus 167 ---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (539)
T PRK07008 167 ---DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLT 243 (539)
T ss_pred ---CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhc
Confidence 111223467889999999999999999999999986433 223346788899999999999887776556788999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+...++..+++.+++++||++.++|+++..|++.......++++||.++++|+++++.+.+++...+ +++++
T Consensus 244 G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~ 322 (539)
T PRK07008 244 GAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVI 322 (539)
T ss_pred CceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 99999987667888999999999999999999999999887655556789999999999999999999887766 68999
Q ss_pred ccccccccccccccCCcC------Cc----CccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCc
Q 004952 502 ESCGGTELSSAYIQGSLL------QP----QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~ 566 (722)
+.||+||++..++..... .+ ....++|+|++++.++|+|++++++|.+...+|||++. .||++.
T Consensus 323 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~- 401 (539)
T PRK07008 323 HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRG- 401 (539)
T ss_pred cccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCC-
Confidence 999999998644332211 00 11357899999999999999999998653225999984 345442
Q ss_pred cccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEee
Q 004952 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (722)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~ 646 (722)
+ . .|+.. +||+|||+|++++||.++++||+||+||++|++|+|.|||++|. .||.|.+++|+++
T Consensus 402 -----~---~-----~~~~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~v~~~ 465 (539)
T PRK07008 402 -----D---A-----SPLVD--GWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAACIAC 465 (539)
T ss_pred -----h---h-----hhhcC--CCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEEEEec
Confidence 2 1 12222 39999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
++...+ +.++++|+..++...+.++++++++++|+.|+.|. ++++++||+|+|||++|++|++++.+
T Consensus 466 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 466 AHPKWD-ERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred CCchhc-cceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 988777 78899998887666777899999999999999995 55899999999999999999998765
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=570.49 Aligned_cols=491 Identities=20% Similarity=0.217 Sum_probs=391.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+++.+.. .+..+.+||+||+++++++|.+|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 32 ~~~~p~~~a~~~~~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 109 (538)
T TIGR03208 32 VANCPDKPALTAYRDG--HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109 (538)
T ss_pred HHHCCCceEEEeeccc--CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccC
Confidence 3678999999864220 12234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++++++... ...............+. .++++... ....+++++......
T Consensus 110 ~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 178 (538)
T TIGR03208 110 PIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDRVLMTPERD 178 (538)
T ss_pred cccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHHHhhccccc
Confidence 999999999999999999999987531 00111111111222221 22222110 112344433221100
Q ss_pred CCCC---CCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHH
Q 004952 343 PRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (722)
Q Consensus 343 ~~~~---~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (722)
.... ........++++++++|||||||.||||+++|+++...+......++++.+|++++.+|++|..+. +.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 258 (538)
T TIGR03208 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMP 258 (538)
T ss_pred cccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHH
Confidence 0000 011123467999999999999999999999999999888877778889999999999999998876 668899
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
+..|+++++.+ ..++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++.+.+++.+.+ ++
T Consensus 259 l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~ 336 (538)
T TIGR03208 259 LILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GA 336 (538)
T ss_pred HHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 99999999876 56788999999999999999999999998765433445678999999999999999988887765 57
Q ss_pred cccccccccccccccccCCcCC-cCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccc
Q 004952 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNA 572 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~ 572 (722)
+++|.||+||++.+........ .....++|+|++++.++|+|+++++++.|+. |||++. .||++ ++
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~ 408 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFGGYLK------RP 408 (538)
T ss_pred eEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCcccccccC------Cc
Confidence 8999999999986544332211 1223578999999999999999999999986 999993 34444 33
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
+.++ + .+.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. +||+|.+++|++.++...|
T Consensus 409 ~~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~g 479 (538)
T TIGR03208 409 HLNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDERLG 479 (538)
T ss_pred cccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCCCCC
Confidence 3332 1 13459999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHH
Q 004952 653 PEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+.+++++++.++...+.+++++++++ +++.+++|. ++++++||+|++||++|++|+
T Consensus 480 -~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 480 -ERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred -ceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 89999999987766778899999986 799999995 558999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=572.52 Aligned_cols=485 Identities=16% Similarity=0.214 Sum_probs=373.7
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++|+++|+++.+.. +.+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 23 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 23 QARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 34789999999864431 2799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
++.++.+++.++++.++++++|+++........+. ..... ...+.+...... . . +.+....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~-------~-~-~~~~~~~----- 157 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP---EALHS--IPVIAVDIAAVT-------R-E-SEHSLDA----- 157 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccchhcccccc---ccccc--cceeEeeccccc-------c-c-ccccccc-----
Confidence 99999999999999999999999875431111111 00000 111122110000 0 0 0000000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh----hhcCCCCCCEEEEecCccccchhHHHHHHh
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (722)
..........+++++|++|||||||.||||+++|+++.+...... ..++...+++++...|+.|+.+++..+.++
T Consensus 158 -~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l 236 (540)
T PRK05857 158 -ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCL 236 (540)
T ss_pred -cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHh
Confidence 000112234678999999999999999999999999876544321 224566788999999999999998888999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
+.|+++++.+ .++..++++|++++||+++++|++++.|.........+++++|.+++||++++....+++. .+ +.+
T Consensus 237 ~~G~~~v~~~--~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~-~~-g~~ 312 (540)
T PRK05857 237 MHGGLCVTGG--ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIE-AT-GVR 312 (540)
T ss_pred hcceeEEecC--CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHH-Hh-CCe
Confidence 9999987643 4667899999999999999999999999887655556789999999999999877765543 33 689
Q ss_pred ccccccccccccccccCCcCC----cCccccccccCCCceEEEECCCCCc-C-----CCCCCccceEEEe-----cccCC
Q 004952 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVP-Y-----PDDQPCVGEVGLF-----PLYLG 564 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~-~-----p~G~~giGel~v~-----~~y~~ 564 (722)
+++.||+||++.......... ....+++|+|++|++++|+|++++. + |.|+ +|||++. .||++
T Consensus 313 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~--~Gel~v~g~~~~~GY~~ 390 (540)
T PRK05857 313 TAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSAS--FGTLWIKSPANMLGYWN 390 (540)
T ss_pred eecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCC--cceEEEeCcchhhhhhC
Confidence 999999999985433222111 1235789999999999999987763 3 3455 4999993 34544
Q ss_pred CccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEE
Q 004952 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (722)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv 644 (722)
+++.+++.|.. | ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 391 ------~~~~t~~~~~~-----g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 456 (540)
T PRK05857 391 ------NPERTAEVLID-----G--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACY 456 (540)
T ss_pred ------CccchhhhcCC-----C--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEE
Confidence 55566666642 3 9999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCC-CHHHH----HHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 645 SVSPAGGGPEVLVIFVVLKKGFTS-QPDKL----KMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~-~~~~l----~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++++...+ +.++++++..+.... ..+++ .+++++.++.|++|. ++++++||+|+|||+||++|++++.++-
T Consensus 457 ~~~~~~~~-~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 457 EIPDEEFG-ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred ecCccccc-cceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence 99987776 778888887653211 12334 445556788899994 5589999999999999999999988653
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=582.55 Aligned_cols=487 Identities=21% Similarity=0.229 Sum_probs=374.8
Q ss_pred CCCCCceEEEEecCCC-CCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec-C
Q 004952 187 RKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-A 264 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl-~ 264 (722)
+++|+++|+++.+... ..+..+.+||+||.++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|+ +
T Consensus 45 ~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~ 124 (612)
T PRK12476 45 ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA 124 (612)
T ss_pred HhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCC
Confidence 6789999999754210 0123458999999999999999997669999999999999999999999999999999999 6
Q ss_pred CCCC--HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC----CcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 265 DSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 265 p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
+.++ .+++.+++++++++++|+++... +.......... ..++.+.. +...
T Consensus 125 ~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~------------------~~~~ 180 (612)
T PRK12476 125 PELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDA------------------IPDS 180 (612)
T ss_pred CCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEecc------------------cccc
Confidence 8877 88999999999999999987532 11111111111 11222210 0000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC-CCCCCEEEEecCccccchhHHHHH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILFS 417 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~~ 417 (722)
.. .........+++++||+|||||||.||||+++|+++.+.+......++ +.++++++++.|+.|+.++..++.
T Consensus 181 ~~-----~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~ 255 (612)
T PRK12476 181 AG-----ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGF 255 (612)
T ss_pred cc-----ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHH
Confidence 00 011112345689999999999999999999999999877766666677 788999999999999999977777
Q ss_pred HhhcCCEEEEecC-CC--ChhhHHHHHH--HhCCcEEechhHHHHHHHhcCC----CCCCCccceeEEEeecCCCCcchH
Q 004952 418 SFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDD 488 (722)
Q Consensus 418 ~L~~G~~lv~~~~-~~--~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~Lr~i~~~Ge~l~~~~~ 488 (722)
+++.|+++++... .. ++..+++.++ ++++|++..+|+++..++.... ....++++|| +++||+++++++.
T Consensus 256 ~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~ 334 (612)
T PRK12476 256 PAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAV 334 (612)
T ss_pred HHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHH
Confidence 7777777777653 22 6778999995 5899999999999888766421 1344688999 9999999999998
Q ss_pred HHHHhhcc-----CCcccccccccccccccccCCcCC------------------------c--CccccccccCCCceEE
Q 004952 489 LWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------P--QAFGAFSTATMTAGLV 537 (722)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~--~~~~~iG~p~~~~~~~ 537 (722)
+++.+.++ ..+++|.||+||++..++...... + ...+++|+|++|++++
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ 414 (612)
T PRK12476 335 TTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAV 414 (612)
T ss_pred HHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEE
Confidence 88877652 245999999999875443321110 0 0124789999999999
Q ss_pred EECCC-CCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccc------------cCCCceecccCceEEE
Q 004952 538 ILDEC-GVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMP------------MYKGMCLRRHGDIIKR 599 (722)
Q Consensus 538 vld~~-~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p------------~~~g~r~yrTGDl~~~ 599 (722)
|+|++ |+++|.|++ |||++. .||++ +++.|++.|...+ ..++.+||+|||+|++
T Consensus 415 ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~ 486 (612)
T PRK12476 415 IVDPDTGAELPDGEV--GEIWLHGDNIGRGYWG------RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY 486 (612)
T ss_pred EEeCCCCcCCCCCCE--EEEEEcCCcccccccC------ChHHHHHHHhhhhccccccccccccccCCCCeeecccccee
Confidence 99988 999999995 999993 45554 5667777775311 0123569999999998
Q ss_pred ecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce--eEEEeecCCCCCceEEEEEEEecCCC-CCCHHHHHHH
Q 004952 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMI 676 (722)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~--~~vv~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~~ 676 (722)
+ ||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|++++++. + ++++++|++.++. ..+.++|.++
T Consensus 487 ~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~ 563 (612)
T PRK12476 487 L-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAAGTSRADPAPAIDA 563 (612)
T ss_pred E-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecCCcccccHHHHHHH
Confidence 4 999999999999999999999999999999535899999 6777887776 5 8899999988764 3567889999
Q ss_pred HHHHHHh-hcC-CC-eeecC--CCCCCCCchhhHHHHHHHHhh
Q 004952 677 FSKAIQS-KLN-PL-FKVVP--EFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 677 l~~~l~~-~~~-p~-~~~v~--~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+++++.. +++ |. +.+++ +||+|+||||+|++|++++.+
T Consensus 564 ~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 564 IRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred HHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 9999884 776 54 34665 699999999999999998754
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=569.70 Aligned_cols=487 Identities=19% Similarity=0.201 Sum_probs=391.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+||++|+++.+. .+||+||.++++++|..|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 31 a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~ 102 (542)
T PRK06155 31 AERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102 (542)
T ss_pred HHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEec
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC-C-CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++..+++++++++++++..... ......... . ...+.+..... .. ....|..... ...
T Consensus 103 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-~~~- 168 (542)
T PRK06155 103 TALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS---VS---VPAGWSTAPL-PPL- 168 (542)
T ss_pred cccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc---cc---cccccchhhh-ccc-
Confidence 9999999999999999999999875421 111111111 1 12222221100 00 0011111000 000
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
..........++++++++|||||||.||||+++|+++.+........+++++++++++..|++|..++..++.+++.|
T Consensus 169 --~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G 246 (542)
T PRK06155 169 --DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAG 246 (542)
T ss_pred --CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcC
Confidence 001112334678999999999999999999999999988777777788999999999999999999998889999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++.+..++.+.+ +++++|
T Consensus 247 ~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~ 322 (542)
T PRK06155 247 ATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLD 322 (542)
T ss_pred ceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEe
Confidence 9999876 45788999999999999999999999999887655555678899887666 4677777777665 678999
Q ss_pred cccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEeccc--CCCcccccccccccccee
Q 004952 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLY--LGASDRLLNADHEEVYFR 580 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y--~~~~~~~~~~~~t~~~f~ 580 (722)
.||+||++.++.... .....+++|.|++++.++|+|++++++|.|+. |||++.... .-...|+.+++.+...|.
T Consensus 323 ~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~GY~~~~~~~~~~~~ 398 (542)
T PRK06155 323 GYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFATGYFGMPEKTVEAWR 398 (542)
T ss_pred eecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccchhhcCCHHHHHHhhc
Confidence 999999987544322 23456789999999999999999999999985 999984321 011112224445555553
Q ss_pred ccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEE
Q 004952 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (722)
Q Consensus 581 ~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~v 660 (722)
..||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|. +||+|.+++|++++++..+ +.+++++
T Consensus 399 -------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~-~~~~~~v 469 (542)
T PRK06155 399 -------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE-DEVMAAV 469 (542)
T ss_pred -------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC-ceEEEEE
Confidence 239999999999999999999999999999999999999999995 9999999999999988777 7889999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHh
Q 004952 661 VLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
+++.+...+..+++++++++|+.+++| .+.++++||+|++||++|++|++++-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 470 VLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred EECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 988777778899999999999999999 45589999999999999999998753
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=573.56 Aligned_cols=494 Identities=21% Similarity=0.242 Sum_probs=379.2
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+.+||++|+++.+. ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 25 ~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~ 96 (579)
T PLN03102 25 ECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINT 96 (579)
T ss_pred HhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 67999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC-------CCcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
.++.+++.++++.++++++|+++... +....+.... ....+++...... ........++.++.+.
T Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 168 (579)
T PLN03102 97 RLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFP--KRPSSEELDYECLIQR 168 (579)
T ss_pred cCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEecccccc--cCCcccccCHHHHHhc
Confidence 99999999999999999999986532 1222222111 1123333211110 0001123456666543
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (722)
................++++++|+|||||||.||||+++|+++..........+.+...+++++..|+.|..++...+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~ 248 (579)
T PLN03102 169 GEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGT 248 (579)
T ss_pred cCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHH
Confidence 32210000000112356899999999999999999999999975444333344556777899999999999888777888
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
+..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++.. + ++
T Consensus 249 ~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~ 325 (579)
T PLN03102 249 AARGGTSVCMRH-VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GF 325 (579)
T ss_pred HHhcCcEEeecc-CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-CC
Confidence 999999998863 56778999999999999999999999998865433344567889999999999988888764 3 67
Q ss_pred cccccccccccccccccCCcCC-----c--------CccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----
Q 004952 499 AIIESCGGTELSSAYIQGSLLQ-----P--------QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF----- 559 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-----~--------~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~----- 559 (722)
++++.||+||+++.++...... + ...+..+.|++ .+.|.| +.++++|.+...+|||++.
T Consensus 326 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~ 403 (579)
T PLN03102 326 QVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIM 403 (579)
T ss_pred eEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchh
Confidence 8999999999985433221100 0 11222233444 456666 4577787531114999983
Q ss_pred cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcc
Q 004952 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (722)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (722)
.||++ +++.+++.|.. | ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|. +||.|.
T Consensus 404 ~GY~~------~~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~ 469 (579)
T PLN03102 404 KGYLK------NPKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KYPKVL 469 (579)
T ss_pred hhhcC------ChhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hCCCcc
Confidence 45555 55566666642 3 9999999999999999999999999999999999999999995 999999
Q ss_pred eeEEEeecCCCCCceEEEEEEEecCCCCC----------CHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHH
Q 004952 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTS----------QPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 640 ~~~vv~~~~~~~g~~~l~a~vv~~~~~~~----------~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L 708 (722)
+++|++++++..+ +.++++|++.++... +..+++++++++||.|++| .++++++||+|++||++|++|
T Consensus 470 ~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L 548 (579)
T PLN03102 470 ETAVVAMPHPTWG-ETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKL 548 (579)
T ss_pred eeEEEeccCcccc-ceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHH
Confidence 9999999998877 899999998865432 3468999999999999999 455899999999999999999
Q ss_pred HHHHhhhh
Q 004952 709 RDQIKHEL 716 (722)
Q Consensus 709 ~~~~~~~~ 716 (722)
++++.+..
T Consensus 549 ~~~~~~~~ 556 (579)
T PLN03102 549 RDIAKGLV 556 (579)
T ss_pred HHHHHHhh
Confidence 99876643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=607.34 Aligned_cols=482 Identities=15% Similarity=0.120 Sum_probs=370.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 456 ~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl 527 (994)
T PRK07868 456 QARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLM 527 (994)
T ss_pred HHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCC--CCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR--EQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 341 (722)
+|. .++.++++++++++||++.... ..+. .....++++..... ...... ....++++.......
T Consensus 528 ~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~-~~~~~iiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 593 (994)
T PRK07868 528 PPD---TDLAAAVRLGGVTEIITDPTNL---------EAAR-QLPGRVLVLGGGES-RDLDLPDDADVIDMEKIDPDAVE 593 (994)
T ss_pred CCc---hhHHHHHhccCCeEEEEChHHH---------HHHH-hcCceEEEecCCcc-ccccCCcchhhhhhhhcCccccc
Confidence 985 6899999999999999986432 1111 12233344321110 000000 001111111110000
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
.+.........+++++||+|| ||||.||++.++|.+...........++++++|++++.+|++|+++++..+.+++.
T Consensus 594 --~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~ 670 (994)
T PRK07868 594 --LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVV 670 (994)
T ss_pred --CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhc
Confidence 000011112236899999999 57888888888887755444444456788999999999999999999776666666
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|++.+++....++..+++.|++++||+++++|++++.|++.......++++||.++. +.+++++.+++.+.++.++++
T Consensus 671 gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~ 748 (994)
T PRK07868 671 GGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVV 748 (994)
T ss_pred cceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchhee
Confidence 666555554678899999999999999999999999998865444456789998763 348999999998888778999
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCc-eEEE-----------ECCCC--CcCCCCCCccceEEEe-cccCCCc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVI-----------LDECG--VPYPDDQPCVGEVGLF-PLYLGAS 566 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~v-----------ld~~~--~~~p~G~~giGel~v~-~~y~~~~ 566 (722)
|.||+||+++... .. .....+++|+|++|+ +++| +|++| ++++.|++ |||++. ++|++
T Consensus 749 ~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~--Gel~~~~~~~~~-- 821 (994)
T PRK07868 749 EFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEV--GVLLARARGPID-- 821 (994)
T ss_pred eeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCc--eEEEEecCCCCC--
Confidence 9999999875432 11 223557899999997 5554 35666 67888985 999984 44442
Q ss_pred cccccccc--cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEE
Q 004952 567 DRLLNADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (722)
Q Consensus 567 ~~~~~~~~--t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv 644 (722)
++. +..+|. ++++||+|||+|++|+||+|+|+||+|||||++|.+|+|.|||++|. +||+|.+|+|+
T Consensus 822 -----p~~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~-~hp~V~~aaVv 890 (994)
T PRK07868 822 -----PTASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG-RIGGVDLAVTY 890 (994)
T ss_pred -----hhhhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh-cCCCeeEEEEE
Confidence 222 222342 25679999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+++++. + +.++|||+++++...+.++|+++|++ +|.||+|. ++++++||+|+|||++|++|++....
T Consensus 891 g~~d~~-~-~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~lp 958 (994)
T PRK07868 891 GVEVGG-R-QLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGIP 958 (994)
T ss_pred eecCCC-C-ceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCCC
Confidence 998875 4 78999999988777788999999986 99999995 55999999999999999999876443
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=587.38 Aligned_cols=501 Identities=16% Similarity=0.141 Sum_probs=367.8
Q ss_pred CCCCCCceEEEEecC-CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++||++|+.+.+. .+..+.+..+||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 55 a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl 134 (666)
T PLN02614 55 VEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPL 134 (666)
T ss_pred HHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEe
Confidence 468999999986421 01112344689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC------CcEEEEcCCCCCCC---CCCCCCCCCHHH
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP------LKAIVLPAIGNDVG---IPLREQDLSWKD 334 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~ 334 (722)
+|.++.+++.+++++++++++|+++... ..+....+ ..++.+........ ........++++
T Consensus 135 ~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (666)
T PLN02614 135 YDTLGAGAVEFIISHSEVSIVFVEEKKI---------SELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDE 205 (666)
T ss_pred cCCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHH
Confidence 9999999999999999999999986421 12211111 11222211000000 000011245666
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhc-----CCCCCCEEEEecCcccc
Q 004952 335 FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGWV 409 (722)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~ 409 (722)
++...... ..+.....++|+|+|+|||||||.||||++||+|+++.+.+....+ +++++|++++++|++|.
T Consensus 206 ~~~~~~~~----~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 281 (666)
T PLN02614 206 FLKLGEGK----QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281 (666)
T ss_pred HHhhcccC----CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHH
Confidence 65433210 1111234579999999999999999999999999988776554433 57889999999999998
Q ss_pred chhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC------------------------
Q 004952 410 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL------------------------ 465 (722)
Q Consensus 410 ~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~------------------------ 465 (722)
++....+.+++.|+++++.+ .++..+++.|+++++|+++++|++++.|......
T Consensus 282 ~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 359 (666)
T PLN02614 282 FDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM 359 (666)
T ss_pred HHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 88755667788999999875 3678999999999999999999999987642100
Q ss_pred -------CCC-------------Cc-cceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCcc
Q 004952 466 -------EGL-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524 (722)
Q Consensus 466 -------~~~-------------~l-~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 524 (722)
... .+ ++||.+++||+++++.+ ..+...+++++++|.||+||+++..+..........
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 438 (666)
T PLN02614 360 KKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDML 438 (666)
T ss_pred HcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcC
Confidence 000 01 68999999999999865 455555656899999999999754433322222346
Q ss_pred ccccccCCCceEEEEC-CC--CCcCCCCCCccceEEE-ecccCCCccccccccccccceeccccCCCceecccCceEEEe
Q 004952 525 GAFSTATMTAGLVILD-EC--GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600 (722)
Q Consensus 525 ~~iG~p~~~~~~~vld-~~--~~~~p~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~ 600 (722)
+++|+|+||++++|+| ++ ++++|.|+. |||+| +++.+. .|+.+++.|++.|. + | ||+|||+|++|
T Consensus 439 gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~--GY~~~pe~T~~~f~-d----G--w~~TGDlg~~d 507 (666)
T PLN02614 439 GTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFS--GYYKREDLTKEVLI-D----G--WLHTGDVGEWQ 507 (666)
T ss_pred CcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCcccc--cccCCHHHhhhhhc-c----C--CcccceEEEEc
Confidence 7999999999999998 33 478999985 99999 332222 12336778888884 1 3 99999999999
Q ss_pred cCCcEEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC----------CCC
Q 004952 601 VGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TSQ 669 (722)
Q Consensus 601 ~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~----------~~~ 669 (722)
+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.... ..++|+|++.... ..+
T Consensus 508 ~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~~~V~g~~~~----~~l~alvv~~~~~~~~~~~~~~~~~~ 582 (666)
T PLN02614 508 PNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG-EVQAVDSVWVYGNSFE----SFLVAIANPNQQILERWAAENGVSGD 582 (666)
T ss_pred CCCCEEEEEcchhceecCCCeeecHHHHHHHHh-cCCCeeEEEEEecCCc----ceEEEEEeCCHHHHHHHHHhcCCCcC
Confidence 99999999999999997 699999999999995 9999999999996532 5799999986421 001
Q ss_pred ------HHHHHHHHHH---------HHHhhcCCC-eeecC-CC-----CCCCCchhhHHHHHHHHhhhhhh
Q 004952 670 ------PDKLKMIFSK---------AIQSKLNPL-FKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 670 ------~~~l~~~l~~---------~l~~~~~p~-~~~v~-~l-----P~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
..++++.+.+ .|+.+-.++ +..++ .| -+||++|+.|+.+.+.|+.++++
T Consensus 583 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ 653 (666)
T PLN02614 583 YNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDE 653 (666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHH
Confidence 1223333322 245554453 22222 33 38999999999999999888765
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=564.66 Aligned_cols=464 Identities=23% Similarity=0.266 Sum_probs=388.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++.++||++|+++.++ .+||+||+++++++|++|.+. +++||+|++++++++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i 82 (483)
T PRK03640 11 RAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82 (483)
T ss_pred HHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEec
Confidence 3468999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
++.++.+++.+++++++++++++++..... .... ....++++......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~~~---------------------~~~~~~~~~~~~~~-- 130 (483)
T PRK03640 83 NTRLSREELLWQLDDAEVKCLITDDDFEAK---------LIPG---------------------ISVKFAELMNGPKE-- 130 (483)
T ss_pred CcCCCHHHHHHHHHhCCCCEEEEcchhhHH---------Hhhh---------------------ccccHHHHhhcccc--
Confidence 999999999999999999999998643210 0000 00113333322111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
.........++++++++|||||||.||||+++|+++...+......++++++|++++..|+.|..++..++.++..|+
T Consensus 131 --~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 208 (483)
T PRK03640 131 --EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGM 208 (483)
T ss_pred --cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCC
Confidence 111223346789999999999999999999999998887777777789999999999999999999887899999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.|+++++|++.++|+++..|.+..... ....+||.+++||+++++...+++... ++++++.
T Consensus 209 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 284 (483)
T PRK03640 209 RVVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQS 284 (483)
T ss_pred EEEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeee
Confidence 999987 467889999999999999999999999998654322 234699999999999999998887764 6899999
Q ss_pred ccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||++..+...... .....+++|+|+++++++|.|+. +++|.|+. |||++. .||++ +++.++.
T Consensus 285 YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~~~ 355 (483)
T PRK03640 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEE--GEIVVKGPNVTKGYLN------REDATRE 355 (483)
T ss_pred eccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCc--eEEEEECcchhhhhcC------CHHHHHH
Confidence 9999987543333322 33456789999999999999864 89999996 999993 45554 4445555
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|.. .||+|||++++++||+++++||+||++|++|.+|++.|||+.+. .+|+|.+++|++.+++..+ ..++
T Consensus 356 ~~~~-------~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~ 426 (483)
T PRK03640 356 TFQD-------GWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPV 426 (483)
T ss_pred HHhc-------CCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceE
Confidence 5532 28999999999999999999999999999999999999999995 9999999999999887776 7888
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+|+++.+ ..+.++++++++++|+.+++|. ++.+++||+|++||++|++|++++.+
T Consensus 427 ~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 427 AFVVKSG--EVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEEEeCC--CCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 8888654 5677899999999999999994 55899999999999999999998864
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-64 Score=563.55 Aligned_cols=480 Identities=21% Similarity=0.224 Sum_probs=395.7
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 004952 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (722)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~ 266 (722)
.+|+++|+.+.+. +.+||+||.++++++|++|++. +++||+|++++++++++++++|||+++|++++|+++.
T Consensus 14 ~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~ 86 (504)
T PRK07514 14 ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86 (504)
T ss_pred hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCC
Confidence 7899999987444 2899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc-EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
++.+++..++++++++++++++... +....+....... .+.+... ....+.+......
T Consensus 87 ~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----- 145 (504)
T PRK07514 87 YTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGAPHVETLDAD----------GTGSLLEAAAAAP----- 145 (504)
T ss_pred CCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCCceEEEecCC----------CcccHHHhhhhcC-----
Confidence 9999999999999999999987432 1122222222111 2222110 1111222221111
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCE
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (722)
.........+++++|++|||||||.||||+++|+++...+......+++.++|++++..|+.|..++ +.++.+++.|++
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 1122234567999999999999999999999999999988877778889999999999999998887 567889999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+ ..++..+++.+ .++|++..+|+++..++.........++++|.+++||+++++++.+++.+.+ +.++++.|
T Consensus 226 ~~~~~-~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 301 (504)
T PRK07514 226 MIFLP-KFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERY 301 (504)
T ss_pred EEECC-CCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeec
Confidence 99986 45778888888 4799999999999999877655566788999999999999999988888765 56899999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEE-----ecccCCCccccccccccccc
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (722)
|+||++..... .........++|.|++++.++|+| ++++++|.|+. |||++ ..||++ +++.+++.
T Consensus 302 G~tE~~~~~~~-~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~gy~~------~~~~~~~~ 372 (504)
T PRK07514 302 GMTETNMNTSN-PYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKGYWR------MPEKTAEE 372 (504)
T ss_pred ccccccccccC-CccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------Cchhhhhh
Confidence 99998764332 222233457899999999999999 88999999985 99998 345554 55566677
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
|..+ .||+|||+|+++++|.++++||+||+||++|++|+|.|||++|. .+|+|.+++|++++++..+ +.+++
T Consensus 373 ~~~~------~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~ 444 (504)
T PRK07514 373 FRAD------GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-EGVTA 444 (504)
T ss_pred cccC------CCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-ceEEE
Confidence 7643 29999999999999999999999999999999999999999995 8999999999999887777 78999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
+++..++...+.++++++++++|+.+++|. ++.+++||+|++||++|++|++++.+..
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~~ 503 (504)
T PRK07514 445 VVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADLF 503 (504)
T ss_pred EEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhhc
Confidence 999987666678899999999999999995 5589999999999999999999887653
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=591.27 Aligned_cols=486 Identities=19% Similarity=0.219 Sum_probs=375.6
Q ss_pred CCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+ ++|+.+.+. +.+||+||.++++++|++|++.+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 214 ~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 286 (718)
T PRK08043 214 QYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMMN 286 (718)
T ss_pred HHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccc
Confidence 468897 688875332 289999999999999999977689999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHH--h-cccC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDF--L-SSVD 340 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 340 (722)
+.++.+++.+++++++++++|++++.....+... +....+. ..+++.... ....+.+. . ....
T Consensus 287 ~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~ 353 (718)
T PRK08043 287 YTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLK---------DDVTTADKLWIFAHLL 353 (718)
T ss_pred cCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhh---------hhcchhHHHHHHHHHh
Confidence 9999999999999999999999876432111100 0011111 112211100 00011110 0 0000
Q ss_pred CCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHh
Q 004952 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
. + ........++|++|++|||||||.||||+++|+++.+.+.+....++++++|++++..|++|.++. ..++.+|
T Consensus 354 ~---~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l 429 (718)
T PRK08043 354 M---P-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPL 429 (718)
T ss_pred C---C-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHH
Confidence 0 0 011123467999999999999999999999999999888877777889999999999999999887 5588999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
..|+++++.+...+...+.+.++++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+++.+.+ +++
T Consensus 430 ~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~ 506 (718)
T PRK08043 430 LTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLR 506 (718)
T ss_pred HcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCC
Confidence 99999999875455667889999999999999999998886642 335678999999999999999988887765 689
Q ss_pred ccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccc
Q 004952 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~ 574 (722)
++|.||+||++.+++.... .....+++|+|++|++++|+|+++. |+ .|||++ ..||++.. +++.
T Consensus 507 l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~--~Gel~v~g~~v~~GY~~~e----~~~~ 575 (718)
T PRK08043 507 ILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQ--GGRLQLKGPNIMNGYLRVE----KPGV 575 (718)
T ss_pred eecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CC--ceEEEEecCCccccccCCC----Cccc
Confidence 9999999999865543322 2235689999999999999997653 34 389987 34555421 1221
Q ss_pred ccccee-ccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 575 EEVYFR-GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 575 t~~~f~-~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
+...+. ........+||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||.+.+++|++.+++..|
T Consensus 576 ~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g- 653 (718)
T PRK08043 576 LEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG- 653 (718)
T ss_pred ccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC-
Confidence 111111 0000112349999999999999999999999999999999999999999995 8888889999999888777
Q ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 654 EVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+.++++++ +...+.++++++++++ |+.|++|. ++++++||+|++|||||++|++++.+
T Consensus 654 e~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 654 EALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred ceEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 88888875 2346678999999998 99999994 55999999999999999999988765
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=567.78 Aligned_cols=493 Identities=21% Similarity=0.203 Sum_probs=407.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||+||.++++++|..|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 92 (523)
T PRK08316 21 ARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92 (523)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 368899999998876 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.++++.+++++++++.... +......+......+.+..... ..........+.++......
T Consensus 93 ~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 161 (523)
T PRK08316 93 FMLTGEELAYILDHSGARAFLVDPALA------PTAEAALALLPVDTLILSLVLG--GREAPGGWLDFADWAEAGSV--- 161 (523)
T ss_pred cccCHHHHHHHHHhCCCCEEEEccchH------HHHHHHhhhcCccceeeeeccc--ccccccchhhHHHHHhcCCC---
Confidence 999999999999999999999987432 1122221111111111111000 01111233445554433221
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH-HHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~ 423 (722)
........++++++++|||||||.||+|.++|++++.........+++.++++++...|+.|..+.. .++.++..|+
T Consensus 162 --~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 --AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred --ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 1122345678999999999999999999999999998888777788999999999999999988874 3556788999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++||+.++.+....+.+.++++++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 999986 4578899999999999999999999999998766566678999999999999999999999888878899999
Q ss_pred ccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||++.+....... .....+++|+|+++++++|+|++|++++.|+. ||+++. .+|++ +++.++.
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~y~~------~~~~~~~ 390 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLGYWD------DPEKTAE 390 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhhhcC------CHHHHHH
Confidence 9999998755443322 22345789999999999999999999999985 999993 34443 4455665
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|. .+||+|||+|++++||.++++||.||+||++|.+|+|.+||+.|. ++|+|.+++|++.+++..+ +.++
T Consensus 391 ~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 461 (523)
T PRK08316 391 AFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALY-THPAVAEVAVIGLPDPKWI-EAVT 461 (523)
T ss_pred Hhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHH-hCCChheEeEecccCcccC-CeEE
Confidence 553 239999999999999999999999999999999999999999994 9999999999999988777 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++++++++...+.++++++++++|+.++.|. ++.++++|+|++||++|++|++++.+..+
T Consensus 462 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 462 AVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence 9999987666677899999999999999994 55899999999999999999999987643
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=567.22 Aligned_cols=483 Identities=19% Similarity=0.219 Sum_probs=390.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+++.+. ++||+||.++++++|..|.+. +++||+|+++++|++++++++|||+++|+++++++
T Consensus 33 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 104 (527)
T TIGR02275 33 AARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLAL 104 (527)
T ss_pred HHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccc
Confidence 368999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+.++.+++.++++.++++++++++.... ....+....+....+. ..+.+... .. ........+.....
T Consensus 105 ~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~-- 173 (527)
T TIGR02275 105 FSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQ-TR-------VEAELFLWLESPAE-- 173 (527)
T ss_pred cccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecC-CC-------CcchhhHHhhCcCc--
Confidence 9999999999999999999999864210 0000011111111221 11122110 00 00011111111111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~ 421 (722)
..+.....++++++++|||||||.||||+++|+++...+......+.++++|+++...|++|.+++. .++.++..
T Consensus 174 ---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 174 ---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred ---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 1122345678999999999999999999999999998888777788899999999999999988874 47889999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+ ..++..+++.++++++|++.++|++++.|.+.......+++++|.+++||+++++++.+++.+.+ +++++
T Consensus 251 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~ 328 (527)
T TIGR02275 251 GGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQ 328 (527)
T ss_pred CCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEE
Confidence 99998865 46788899999999999999999999999877655566788999999999999999999887765 57899
Q ss_pred ccccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
+.||+||+++++...........+++|+|+ ++..+.|+|++|+++|.|+. |||++. .||++ +++.+
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~gY~~------~~~~~ 400 (527)
T TIGR02275 329 QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFRGYYK------APEHN 400 (527)
T ss_pred eeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccchhhcC------ChhHh
Confidence 999999976543322212223346889999 48999999999999999985 999983 45554 45566
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
...|..+ +||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.++...+ +.
T Consensus 401 ~~~~~~d------g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~ 472 (527)
T TIGR02275 401 AAAFDAE------GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG-EK 472 (527)
T ss_pred HhhcCcC------CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-cE
Confidence 6666533 39999999999999999999999999999999999999999995 9999999999999998877 89
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHH-HHhhcCC-CeeecCCCCCCCCchhhHHHHH
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+++||+++++ ..+..+|+++++++ ++.++.| .+.++++||+|++||++|++|+
T Consensus 473 ~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 473 SCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 9999998765 46778999999985 9999999 4558999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=559.50 Aligned_cols=470 Identities=21% Similarity=0.250 Sum_probs=384.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+||++|+.+...+ ..+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 5 a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~ 78 (488)
T PRK09088 5 ARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLN 78 (488)
T ss_pred hhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeC
Confidence 4688999999863211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.+++++++++++++++...... .....++++......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~--- 123 (488)
T PRK09088 79 WRLSASELDALLQDAEPRLLLGDDAVAAGR--------------------------------TDVEDLAAFIASADA--- 123 (488)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEcchhhccc--------------------------------ccccchhhhhhhccc---
Confidence 999999999999999999999986432100 001112222211111
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH-HHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~ 423 (722)
..........++++++++|||||||.||+|.++|+++...+........+.++|++++..|+.|.+++. .++.++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 000111234568899999999999999999999999988777666667788999999999999999984 4667888999
Q ss_pred EEEEecCCCChhhHHHHHH--HhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 424 TLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
++++.+ ..++..++..+. ++++|++.++|++++.+.+........+++||.+++||++++......+... +++++
T Consensus 204 ~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~ 280 (488)
T PRK09088 204 SILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMV 280 (488)
T ss_pred EEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCcee
Confidence 998876 456677777775 4899999999999999987654445567899999999999998877766643 67899
Q ss_pred ccccccccccccccCCc--CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccc
Q 004952 502 ESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (722)
+.||+||++..+..... ......+++|+|+++++++|+|++++++|.|++ |||++. .||++ +++.
T Consensus 281 ~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gY~~------~~~~ 352 (488)
T PRK09088 281 DGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYWR------RPQA 352 (488)
T ss_pred eeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccchhhcC------Chhh
Confidence 99999999864432211 112345789999999999999999999999985 999993 34554 4445
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
+++.|.. ++||+|||+|++++||.++++||.||+||++|.+|+|.|||++|. .||+|.+++|++++++..| +
T Consensus 353 ~~~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~ 424 (488)
T PRK09088 353 TARAFTG------DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQWG-E 424 (488)
T ss_pred hhhhhcC------CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccCC-c
Confidence 5555542 249999999999999999999999999999999999999999995 9999999999999987767 7
Q ss_pred EEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
..+++|+++++...+.++++++++++++.|+.|. +.++++||+|++||++|++|++++.+.
T Consensus 425 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 425 VGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred eeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 8899999887655677899999999999999995 558999999999999999999988764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=564.59 Aligned_cols=484 Identities=18% Similarity=0.219 Sum_probs=394.1
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~ 268 (722)
||++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++++++..+
T Consensus 37 p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~ 108 (536)
T PRK10946 37 SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108 (536)
T ss_pred CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence 99999998776 899999999999999999999 999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc-EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCC
Q 004952 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (722)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (722)
..++..++++++++++++++.... ...-.....+....+.. .+.+... .....+.+++..... .
T Consensus 109 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 173 (536)
T PRK10946 109 RSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDAINHPAE-----D 173 (536)
T ss_pred HHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCCceEEEEecC---------CCCccHHHHhhCccc-----c
Confidence 889999999999999999864210 00001112222222222 2222111 122334444433221 1
Q ss_pred CCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhhcCCEE
Q 004952 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATL 425 (722)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~G~~l 425 (722)
.+.....++++++++|||||||.||||+++|+++...+......++++++|++++..|++|.+++. .++.+|..|+++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~ 253 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTV 253 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEE
Confidence 122344678999999999999999999999999999888877888999999999999999887763 578899999999
Q ss_pred EEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhc--CCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++.+ ..++..++++++++++|++.++|++++.|+.. .......+++||.+++||+++++.+.+++.+.+ ++++++.
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~ 331 (536)
T PRK10946 254 VLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQV 331 (536)
T ss_pred EECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEe
Confidence 9875 45777889999999999999999999999875 222334578999999999999999988887665 6899999
Q ss_pred ccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||+++++............++|+|+ +++.++|+|+++++++.|+. |||++. .||++ +++.|++
T Consensus 332 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~GY~~------~~~~t~~ 403 (536)
T PRK10946 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 403 (536)
T ss_pred ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchhhcC------Ccccchh
Confidence 9999976544322222223457899999 79999999999999999995 999983 45554 5567777
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|..+. ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..| +.++
T Consensus 404 ~~~~d~------~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~ 475 (536)
T PRK10946 404 AFDANG------FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDELMG-EKSC 475 (536)
T ss_pred hcccCC------ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCcccC-ceEE
Confidence 776433 9999999999999999999999999999999999999999995 9999999999999988777 8899
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKA-IQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++++++++ .+.+++++++++. ++.|+.| .+.+++++|+|++||++|++|++++++..
T Consensus 476 a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 476 AFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred EEEEeCCC--CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 99998764 6678999999986 9999999 56689999999999999999999887654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=566.28 Aligned_cols=499 Identities=21% Similarity=0.224 Sum_probs=404.7
Q ss_pred ccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHH
Q 004952 172 VLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIY 250 (722)
Q Consensus 172 ~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~ 250 (722)
..|..+.+.. .++.+|+++|+.+.+. .+||.||.++++++|++|.+. +++||+|++++++++++++++
T Consensus 16 ~~n~~~~~~~---~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 16 RQNWVNQLAR---HALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccCHHHHHHH---HHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3455544322 2357899999998877 999999999999999999999 999999999999999999999
Q ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCC
Q 004952 251 LAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQ 328 (722)
Q Consensus 251 lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 328 (722)
+||+++|++++|+++.++.+++..+++++++++++++.... +.........+. ..+++.. . ...+
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~------~~~~ 151 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGG-S------SDDS 151 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecC-C------Cccc
Confidence 99999999999999999999999999999999999987432 111111111121 1222211 0 0112
Q ss_pred CCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCC-CCCCEEEEecCcc
Q 004952 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLG 407 (722)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~ 407 (722)
..++++++..... ..+......+++++++|||||||.||||+++|+++...+......+++ ..+++++...|+.
T Consensus 152 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (542)
T PRK07786 152 VLGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLF 226 (542)
T ss_pred ccCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchH
Confidence 3456666543322 112234456889999999999999999999999998888776666776 6788999999999
Q ss_pred ccchhHHHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcc
Q 004952 408 WVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (722)
Q Consensus 408 ~~~~~~~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~ 486 (722)
|.+++..++.++..|+++++.+. ..++..+++.|+++++|+++++|+++..|+......... .+||.+++||++++++
T Consensus 227 ~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~ 305 (542)
T PRK07786 227 HIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDT 305 (542)
T ss_pred HHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHH
Confidence 99898889999999999999752 457889999999999999999999999998765433333 3799999999999999
Q ss_pred hHHHHHhhccCCcccccccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ec
Q 004952 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FP 560 (722)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~ 560 (722)
..+++.+.+++.++++.||+||++.+.+..... ......++|+|++++.++|+|++++++|.|+. |||++ ..
T Consensus 306 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~ 383 (542)
T PRK07786 306 LLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEV--GEIVYRAPTLMS 383 (542)
T ss_pred HHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCc--eEEEEEChhhhh
Confidence 999999888889999999999998654332221 12344689999999999999999999999985 99998 34
Q ss_pred ccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce
Q 004952 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640 (722)
Q Consensus 561 ~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~ 640 (722)
||++ +++.++..|.. .||+|||++++++||.++++||.||+||++|.+|++.|||++|. .||+|.+
T Consensus 384 gy~~------~~~~~~~~f~~-------~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~ 449 (542)
T PRK07786 384 GYWN------NPEATAEAFAG-------GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVE 449 (542)
T ss_pred hhcC------CHHHHHHHhhC-------CcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCccE
Confidence 5554 44556656631 29999999999999999999999999999999999999999995 9999999
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 641 TAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 641 ~~vv~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++|++.+++..+ +.+++++++.++. ....++++++++++++.|+.|. ++++++||+|++||++|++|++++....-
T Consensus 450 ~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~ 527 (542)
T PRK07786 450 VAVIGRADEKWG-EVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVN 527 (542)
T ss_pred EEEEeccCcccC-ceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhc
Confidence 999999887777 8889999887643 3566899999999999999995 55899999999999999999999877643
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=566.11 Aligned_cols=495 Identities=22% Similarity=0.269 Sum_probs=398.1
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++||++|+++.++ +++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 106 (547)
T PRK06087 34 RAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLP 106 (547)
T ss_pred HHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccch
Confidence 67999999997653 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
.++.+++.+++++++++++++++.... ....+.........+. ..+.+..... ......+.+++.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 177 (547)
T PRK06087 107 SWREAELVWVLNKCQAKMFFAPTLFKQ-TRPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQIIADYEP-- 177 (547)
T ss_pred hcCHHHHHHHHHhcCCeEEEEeccccc-ccHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHHHhccCCc--
Confidence 999999999999999999999864311 1111112222222222 2222221110 1122345555443221
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G 422 (722)
........++++++|+|||||||.||||+++|++++.........+++.+++++++..|++|.+++ ..++.+++.|
T Consensus 178 ---~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g 254 (547)
T PRK06087 178 ---LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254 (547)
T ss_pred ---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcC
Confidence 111223467899999999999999999999999998877777777889999999999999999987 4678889999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+ ..++..+++.|+++++|++..+|+.+..++........++++||.+++||+++++++.+.+... ++++++
T Consensus 255 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~ 331 (547)
T PRK06087 255 ARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS 331 (547)
T ss_pred CEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE
Confidence 9999986 4678899999999999999988777777766544455678899999999999999988877654 789999
Q ss_pred cccccccccccccCCcCC-cCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccccc
Q 004952 503 SCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEE 576 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~ 576 (722)
.||+||++.......... .....++|+|++++.++|+|++++++|.|+. ||+++ ..||++ +++.+.
T Consensus 332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~~ 403 (547)
T PRK06087 332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFMGYLD------EPELTA 403 (547)
T ss_pred EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEecccccccccC------CHHHHH
Confidence 999999986544332211 1233578999999999999999999999985 99998 345554 444555
Q ss_pred cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 577 ~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
..|.. ..||+|||+++++++|+++++||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++..| +++
T Consensus 404 ~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~ 475 (547)
T PRK06087 404 RALDE------EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG-ERS 475 (547)
T ss_pred HHhCC------CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-ceE
Confidence 55542 239999999999999999999999999999999999999999995 8999999999999988777 899
Q ss_pred EEEEEecC-CCCCCHHHHHHHHH-HHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 657 VIFVVLKK-GFTSQPDKLKMIFS-KAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 657 ~a~vv~~~-~~~~~~~~l~~~l~-~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
++++++.+ +...+.+++.++++ +.++.+++| .+.++++||+|.|||++|++|++++.+++...
T Consensus 476 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~ 541 (547)
T PRK06087 476 CAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQD 541 (547)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhh
Confidence 99999876 44556788888886 579999999 56699999999999999999999999887654
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=569.53 Aligned_cols=500 Identities=17% Similarity=0.195 Sum_probs=395.8
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
..+|+++|+++.+. ..+.+||+||.++++++|++|++ . +++||+|+++++|++++++++|||+++|++++|++
T Consensus 21 ~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~ 95 (576)
T PRK05620 21 TVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLN 95 (576)
T ss_pred HhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecc
Confidence 68999999997543 23589999999999999999987 6 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCC---CCCCCCCCCCHHHHhccc
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV---GIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 339 (722)
|.++.+++.+++++++++++|+++... +.+.......+. .++++....... .........+|.++.+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (576)
T PRK05620 96 KQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR 169 (576)
T ss_pred cccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence 999999999999999999999987432 122222222222 122222111000 000111234577776533
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh--hhhcCCCCCCEEEEecCccccchhHHHHH
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (722)
.. ..+.....++++++++|||||||.||||+++|+++....... ...+++.+++++++..|+.|+++...++.
T Consensus 170 ~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 244 (576)
T PRK05620 170 ST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLA 244 (576)
T ss_pred CC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHH
Confidence 21 122234567999999999999999999999999986544332 23577889999999999999999988889
Q ss_pred HhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccC
Q 004952 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (722)
Q Consensus 418 ~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~ 497 (722)
++..|+++++.+...++..+++.|+++++|++..+|+++..|+........+..+||.+++||+++++.+.+++...+ +
T Consensus 245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~ 323 (576)
T PRK05620 245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-G 323 (576)
T ss_pred HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-C
Confidence 999999999987666888999999999999999999999988765433333456899999999999999988887665 5
Q ss_pred CcccccccccccccccccCCcCC---c----CccccccccCCCceEEEECCCCCcCC--CCCCccceEEE-----ecccC
Q 004952 498 NAIIESCGGTELSSAYIQGSLLQ---P----QAFGAFSTATMTAGLVILDECGVPYP--DDQPCVGEVGL-----FPLYL 563 (722)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~---~----~~~~~iG~p~~~~~~~vld~~~~~~p--~G~~giGel~v-----~~~y~ 563 (722)
+++++.||+||++..+....... . ....++|++.++++++|+|+ |++++ .|. +|||++ ..||+
T Consensus 324 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~--~Gel~v~g~~~~~gY~ 400 (576)
T PRK05620 324 VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRN--EGEIQVRGNWVTASYY 400 (576)
T ss_pred CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCC--ceEEEEEcCccccccc
Confidence 78999999999986544332211 0 12347899999999999998 77775 355 499998 34565
Q ss_pred CCcccccccccc----ccceeccccC------CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 564 GASDRLLNADHE----EVYFRGMPMY------KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 564 ~~~~~~~~~~~t----~~~f~~~p~~------~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
+ +++.+ +..|..+++. ...+||+|||+|++++||.++|+||.||+||++|.+|++.|||++|.
T Consensus 401 ~------~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~- 473 (576)
T PRK05620 401 H------SPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIM- 473 (576)
T ss_pred C------CccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHh-
Confidence 5 34444 5566544421 12459999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCC---CCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFT---SQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+||.|.+|+|++.+++..| +.++++++..++.. .+.++|+++|+++|+.|++|. ++++++||+|+|||++|++|+
T Consensus 474 ~~p~v~~~~vv~~~~~~~g-~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~ 552 (576)
T PRK05620 474 AAPEVVECAVIGYPDDKWG-ERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLR 552 (576)
T ss_pred cCCCceEEEEEeccCCCcC-ceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHH
Confidence 9999999999999998877 88999999877643 346899999999999999995 558999999999999999999
Q ss_pred HHHhh
Q 004952 710 DQIKH 714 (722)
Q Consensus 710 ~~~~~ 714 (722)
+++++
T Consensus 553 ~~~~~ 557 (576)
T PRK05620 553 QHLAD 557 (576)
T ss_pred HHHhc
Confidence 99875
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=560.59 Aligned_cols=474 Identities=20% Similarity=0.223 Sum_probs=390.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+.+.+. .+||+||.++++++|+.|.+. +++||+|+++++++.++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 81 (502)
T TIGR01734 10 AETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81 (502)
T ss_pred HHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence 367899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.++++.++++.++++....... .....+.+. ...+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------------~~~~~~~~~---------------~~~~~~~~~~~--- 131 (502)
T TIGR01734 82 TSIPSERIEMIIEAAGPELVIHTAELSIDA------------VGTQIITLS---------------ALEQAETSGGP--- 131 (502)
T ss_pred CcChHHHHHHHHHhcCCCEEEecccccccc------------cCCceEEch---------------HhhhhhhhcCC---
Confidence 999999999999999999999987432100 000111110 00111111100
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
........++++++++|||||||.||||+++|+++...+.+....+++..+++++...|++|+.+++.++.++..|++
T Consensus 132 --~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~ 209 (502)
T TIGR01734 132 --VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGT 209 (502)
T ss_pred --ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCE
Confidence 001122356889999999999999999999999999988888888899999999999999999999989999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++.+.. .++..+++.++++++|.+.++|++++.++.........+++++.++++|++++++..+++.+.++++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 289 (502)
T TIGR01734 210 LHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN 289 (502)
T ss_pred EEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe
Confidence 9998753 36788999999999999999999998877654444556889999999999999999999998888899999
Q ss_pred cccccccccccccCCc----CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCcccccccc
Q 004952 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (722)
.||+||++++++.... .......++|.|+++++++|+|++++++|.|+. |||++ .+||++ +++
T Consensus 290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~ 361 (502)
T TIGR01734 290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKGYLN------NPE 361 (502)
T ss_pred CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCe--eEEEEccccccccccC------Ccc
Confidence 9999999764433221 122234579999999999999999999999985 99998 346665 444
Q ss_pred ccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeec-CCCCC
Q 004952 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGG 652 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~-~~~~g 652 (722)
.+...|... .|.+||+|||+|+++++ +++++||.||+||++|++|+|.|||+.|. +||+|.+|+|++.. +...+
T Consensus 362 ~~~~~~~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~ 436 (502)
T TIGR01734 362 KTAEAFFSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV 436 (502)
T ss_pred cchHhheeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc
Confidence 555555432 35679999999999976 99999999999999999999999999995 99999999999976 34344
Q ss_pred ceEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHh
Q 004952 653 PEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
+.++++|++.+....+ ..+++++++++|+.++.|. ++++++||+|++||++|++|++++.
T Consensus 437 -~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 437 -EYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred -eEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 7899999987643222 2678999999999999994 5599999999999999999999865
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=565.94 Aligned_cols=490 Identities=21% Similarity=0.227 Sum_probs=387.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+++.+. .+||.||+++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 34 ~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~ 105 (562)
T PRK12492 34 CKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEecc
Confidence 468999999997665 89999999999999999987 5 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcC-------------C---C---CCCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA-------------I---G---NDVGIP 324 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~---~~~~~~ 324 (722)
+|.++.+++.+++++++++++++++..... ...+........+.... . . ......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK12492 106 NPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAY 179 (562)
T ss_pred CccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhccccccccccccccc
Confidence 999999999999999999999997643211 11111110000000000 0 0 000000
Q ss_pred CCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC---------CC
Q 004952 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------LK 395 (722)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~---------~~ 395 (722)
.......|++....... .........++++++|+|||||||.||||+++|+++...+......+. +.
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK12492 180 HLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK 255 (562)
T ss_pred CCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence 01123445555433221 111123446689999999999999999999999999776655443332 23
Q ss_pred CC-CEEEEecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccce
Q 004952 396 VG-DVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (722)
Q Consensus 396 ~~-d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (722)
.+ ++++...|+.|.++. +.++..+..|+++++.....++..+++.|+++++|++..+|+++..|.........+++++
T Consensus 256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 335 (562)
T PRK12492 256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSAL 335 (562)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccce
Confidence 33 467888999999887 4566778899988877655577889999999999999999999999988765556678999
Q ss_pred eEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCcc
Q 004952 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (722)
Q Consensus 474 r~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~gi 553 (722)
|.+++||+++++.+.+++.+.+ ++++++.||+||++.+++..........+++|+|+++++++|+|++++++|.|+.
T Consensus 336 r~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~-- 412 (562)
T PRK12492 336 KLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGER-- 412 (562)
T ss_pred eEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCc--
Confidence 9999999999999988887654 6899999999999876544433333345789999999999999999999999985
Q ss_pred ceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHH
Q 004952 554 GEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (722)
Q Consensus 554 Gel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (722)
|||++. .||++ +++.+.+.|.. ++||+|||+|+++++|.++|.||.||+||++|++|+|.|||
T Consensus 413 Gel~v~g~~~~~gY~~------~~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE 480 (562)
T PRK12492 413 GELCIKGPQVMKGYWQ------QPEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480 (562)
T ss_pred eEEEEeCCcccccccc------CchhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHH
Confidence 999993 34554 55566666642 23999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHH
Q 004952 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRV 707 (722)
Q Consensus 629 ~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~ 707 (722)
+.|. .||.|.+++|++.++...+ +.+++|+++.++ ..+.++++++++++|+.+++| .+.++++||+|++||++|++
T Consensus 481 ~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~ 557 (562)
T PRK12492 481 DVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRE 557 (562)
T ss_pred HHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHH
Confidence 9995 9999999999999887777 889999987653 356689999999999999999 55589999999999999999
Q ss_pred HHHH
Q 004952 708 LRDQ 711 (722)
Q Consensus 708 L~~~ 711 (722)
|+++
T Consensus 558 L~~~ 561 (562)
T PRK12492 558 LRDI 561 (562)
T ss_pred HHhh
Confidence 9875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=561.91 Aligned_cols=491 Identities=18% Similarity=0.207 Sum_probs=390.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. .+..+.+||+||.++++++|+.|.+. +++||+|+++++|+.++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 17 ADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 468999999998653 13345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC---CCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
|.++.+++.++++++++++++++.... +.+..+.+.. ...+++..... ........+++.......
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 162 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVAL-----PADDGVSSFTQLKAQQPA 162 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCC-----cccccccCHHHHhccCCc
Confidence 999999999999999999999987432 2222222211 11222221110 011123445554433221
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhh
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (722)
.........++++++++|||||||.||||+++|++++...........+.+++++++..|+.|..+. ..++.++.
T Consensus 163 ----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 238 (517)
T PRK08008 163 ----TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFS 238 (517)
T ss_pred ----cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHh
Confidence 0111223456899999999999999999999999987654433334467889999999998886554 66788999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+ ..++..+++.++++++|++.++|++++.+............+++.+.+++ .+++....++.+.+ ++++
T Consensus 239 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~ 315 (517)
T PRK08008 239 AGATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRL 315 (517)
T ss_pred cCcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeE
Confidence 999999987 56788999999999999999999999999876543333456788887764 67777777776654 6899
Q ss_pred cccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEec----ccCCCccccccccccc
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFP----LYLGASDRLLNADHEE 576 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~----~y~~~~~~~~~~~~t~ 576 (722)
++.||+||++..++...........++|+|+++++++|+|+++++++.|+. |||++.. ++.. .|+.+++.++
T Consensus 316 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~--gy~~~~~~~~ 391 (517)
T PRK08008 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFK--EYYLDPKATA 391 (517)
T ss_pred EeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhh--hHhCChHHHh
Confidence 999999999865554444444455789999999999999999999999995 9999842 2111 1222556677
Q ss_pred cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 577 ~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
+.|..+. ||+|||+|++++||.++++||.||+||++|++|+|.|||++|. .||.|.+++|++++++..+ +.+
T Consensus 392 ~~~~~~g------~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~~~~~-~~~ 463 (517)
T PRK08008 392 KVLEADG------WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKDSIRD-EAI 463 (517)
T ss_pred hcccCCC------CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCCCCCC-ceE
Confidence 7776432 9999999999999999999999999999999999999999995 9999999999999988776 889
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHH
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+++|+++++...+.++++++++++++.+++| .++++++||+|++||++|+.|+
T Consensus 464 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 464 KAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 9999998876677789999999999999999 4558999999999999999874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=561.81 Aligned_cols=498 Identities=19% Similarity=0.230 Sum_probs=393.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||+++++.... +..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 95 (542)
T PRK06018 20 ARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVN 95 (542)
T ss_pred HHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccc
Confidence 478999999985322 1234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++..+++++++++++++..+. +.+..+....+. ..+++....... ....++...+.+++.....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 167 (542)
T PRK06018 96 PRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDAAHMP-QTTLKNAVAYEEWIAEADG- 167 (542)
T ss_pred cccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEeccccccc-ccCccccccHHHHhccCCc-
Confidence 999999999999999999999987432 222222222222 222222111100 0011133456666544321
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHH-H-HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-R-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~-~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (722)
........++++++++|||||||.||||+++|++.+ + ........+++..+|+++...|+.|+.+....+.++.
T Consensus 168 ----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~ 243 (542)
T PRK06018 168 ----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243 (542)
T ss_pred ----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhh
Confidence 112233466889999999999999999999999743 2 2223345677889999999999999888766778899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.....++..++++++++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+ .++++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~--~~~~~ 321 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED--MGVEV 321 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH--hCCCe
Confidence 9999998765667788999999999999999999999998766555567889999999999999999999887 47899
Q ss_pred cccccccccccccccCCcCCc----------CccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-cccCCCcccc
Q 004952 501 IESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRL 569 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~ 569 (722)
++.||+||++.+.+......+ ....++|+|.++++++|+|++++++|.+...+||+++. +.... .|
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~---gy 398 (542)
T PRK06018 322 RHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAA---AY 398 (542)
T ss_pred EeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcch---hh
Confidence 999999999865443321110 11357899999999999999999998643225999993 22111 12
Q ss_pred ccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCC
Q 004952 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (722)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~ 649 (722)
++. +...+. ..+||+|||++++++||+++++||.||+||++|++|++.|||+.+. +||+|.+|+|++.+++
T Consensus 399 ~~~--~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~ 469 (542)
T PRK06018 399 YRV--DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAAVIGVYHP 469 (542)
T ss_pred hcC--cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEEEEeccCC
Confidence 221 111221 2349999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
..+ +.++++|++.++...+.++++++++++++.++.| .+..+++||+|++||++|++|++.+.+
T Consensus 470 ~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 470 KWD-ERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred CcC-ceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 777 8899999988877777889999999999999999 455999999999999999999998876
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=559.58 Aligned_cols=478 Identities=19% Similarity=0.188 Sum_probs=373.9
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++|+++|+++.+.+ .++||+||.++++++|+.|.++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 6 HAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 34689999999875321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
++.++++++.+++++++++++++++... .......... ...+.+. .. ......+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~-~~~~~~~--~~------~~~~~~~~~~~~~~~~-- 142 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD------GLAAKVGADL-PLRLSFG--GE------IDGFGSFEAALAGAGP-- 142 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh------hHHHHhhhcc-ceEEEec--Cc------ccccccHHHHhcccCC--
Confidence 9999999999999999999999976431 0011110000 0011111 00 0111223333221110
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEe--CChHHHHH----HHHhhhhcCCCCCCEEEEecCccccchhHHHHH
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIRC----TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~--th~~~~~~----~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (722)
......++++|+|||||||.||||++ +|+++... .......+++..+++++..+|++|+.++...+.
T Consensus 143 -------~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 143 -------RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred -------CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 01122357999999999999999995 55655432 112234567889999999999999988755556
Q ss_pred HhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhc
Q 004952 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (722)
Q Consensus 418 ~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~ 495 (722)
.+..|+++++.+ ..++..+++.|+++++|++.++|+++..|..... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 678899998876 4578899999999999999999999999886532 2345678999999999999999988887654
Q ss_pred cCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccc
Q 004952 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLL 570 (722)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~ 570 (722)
+.++++.||+||++.++...........+++|+|+++ .++|+|++++++|.|++ |||++. .||++
T Consensus 295 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------ 364 (501)
T PRK13390 295 -GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPFRYLN------ 364 (501)
T ss_pred -CCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccccccC------
Confidence 5789999999999864433222222345789999999 69999999999999996 999993 34444
Q ss_pred cccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCC
Q 004952 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (722)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~ 650 (722)
+++.|++.|... +..||+|||+|++++||++++.||.||+||++|+||+|.|||++|. .||+|.+++|++++++.
T Consensus 365 ~~~~t~~~~~~~----~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~ 439 (501)
T PRK13390 365 DPEKTAAAQHPA----HPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPE 439 (501)
T ss_pred ChhhhHHhhccC----CCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcc
Confidence 555666655421 2249999999999999999999999999999999999999999995 99999999999999988
Q ss_pred CCceEEEEEEEecCCCCCC---HHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHH
Q 004952 651 GGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~ 709 (722)
.+ +.+++++++.++...+ .++++++++++|+.||.| .++++++||+|++||++|++|+
T Consensus 440 ~~-e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 440 MG-EQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred cC-ceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 77 8999999987654332 358899999999999999 4558999999999999999984
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-63 Score=560.52 Aligned_cols=496 Identities=20% Similarity=0.174 Sum_probs=392.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.++ .+||.||+++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 13 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~ 84 (533)
T PRK07798 13 ADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVN 84 (533)
T ss_pred HHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecC
Confidence 478999999999766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc--EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+.++.+++.+++++++++++++++... +....+....+.. .+.+..... .....+..++.+++.....
T Consensus 85 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 154 (533)
T PRK07798 85 YRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDALAAGSP- 154 (533)
T ss_pred cCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHHHHhccCC-
Confidence 999999999999999999999987432 1122222222221 222221111 1111234567776654322
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---------cCC------CCCCEEEEecCcc
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---------IDL------KVGDVYCWPTNLG 407 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---------~~~------~~~d~~l~~~~~~ 407 (722)
...... ...+.++++|||||||.||||+++|+++.......... ..+ ..+++++...|+.
T Consensus 155 ----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 229 (533)
T PRK07798 155 ----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLM 229 (533)
T ss_pred ----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchh
Confidence 011111 22445799999999999999999999987654432211 111 5678999999999
Q ss_pred ccchhHHHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHH-HHHhcCC-CCCCCccceeEEEeecCCCC
Q 004952 408 WVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVK-AWRNTNC-LEGLDWTKIRSFASTGETSN 484 (722)
Q Consensus 408 ~~~~~~~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~-~l~~~~~-~~~~~l~~Lr~i~~~Ge~l~ 484 (722)
|+.+++.++.+|+.|+++++.+. ..++..+++.|+++++|++.++|..+. .+..... ....+++++|.+++||++++
T Consensus 230 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~ 309 (533)
T PRK07798 230 HGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFS 309 (533)
T ss_pred hhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCC
Confidence 99999999999999999999873 457889999999999999999986553 3333222 23456789999999999999
Q ss_pred cchHHHHHhhccCCcccccccccccccccccCCcCCcCcccccc--ccCCCceEEEECCCCCcCCCCCCccceEEEeccc
Q 004952 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLY 562 (722)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y 562 (722)
+.+.+++.+.+++..+++.||+||++.+........ ....| ++.++..++|+|+++++++.|+.+.|+++.++..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~ 386 (533)
T PRK07798 310 PSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG---AVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHI 386 (533)
T ss_pred HHHHHHHHHHcCCCeEEeeecccccccccccCCCCC---CccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecCc
Confidence 999999988877889999999999975443332211 12233 7889999999999999999998755777765422
Q ss_pred CCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeE
Q 004952 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642 (722)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~ 642 (722)
.. .++.+++.+++.|.. ..|.+||+|||++++++||+++++||.||+||++|++|+|.|||++|. ++|+|.+++
T Consensus 387 ~~--gy~~~~~~t~~~f~~---~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~ 460 (533)
T PRK07798 387 PL--GYYKDPEKTAETFPT---IDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AHPDVADAL 460 (533)
T ss_pred cc--cccCChhhhHHhhcc---CCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hCccceeEE
Confidence 11 223355667766654 236679999999999999999999999999999999999999999995 999999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 643 vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
|++.++...+ +.++++++++++...+.++++++++++|+.|++| .++.+++||+|++||++|+.|+++.++
T Consensus 461 v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 461 VVGVPDERWG-QEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EEeccCcccC-ceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence 9999887777 8899999988776678899999999999999999 456899999999999999999998875
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=560.98 Aligned_cols=477 Identities=19% Similarity=0.195 Sum_probs=374.6
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v-~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
.+|+++|+++.+. .+||+||.++++++|..|.+. + ++||+|+++++|++++++++|||+++|++++|++|
T Consensus 13 ~~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p 84 (540)
T PRK13388 13 AGDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNT 84 (540)
T ss_pred ccCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecc
Confidence 3699999998766 999999999999999999999 9 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
.++.+++..++++++++++|+++.... ....+. .....++++. ...+.+++.....
T Consensus 85 ~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~-~~~~~~i~~~-------------~~~~~~~~~~~~~---- 140 (540)
T PRK13388 85 TRRGAALAADIRRADCQLLVTDAEHRP------LLDGLD-LPGVRVLDVD-------------TPAYAELVAAAGA---- 140 (540)
T ss_pred cCChHHHHHHHHhcCCCEEEEChhhhH------HHHhhc-ccCceEEEcc-------------chhhhhhhccccC----
Confidence 999999999999999999999875321 111110 0011222221 0123333321111
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHH-HHHhhcCCE
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL-FSSFLNGAT 424 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~L~~G~~ 424 (722)
..+.....++++++++|||||||.||||+++|+++..........+++.++|+++...|+.|..++... +.+|..|++
T Consensus 141 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 141 -LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred -cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 111123467999999999999999999999999998888877788999999999999999999988554 457999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+ ..++..+++.|+++++|++..+|+.+..++..........++++.+ + |+.+++....++.+.+ +++++|.|
T Consensus 220 ~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~Y 295 (540)
T PRK13388 220 VALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGY 295 (540)
T ss_pred EEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceeccc
Confidence 98875 4677889999999999999999999999887543222223466643 3 5556777777776665 57899999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEE-----------EECCCCCcCC-CCCCccceEEEecccCCCccccccc
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPYP-DDQPCVGEVGLFPLYLGASDRLLNA 572 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-----------vld~~~~~~p-~G~~giGel~v~~~y~~~~~~~~~~ 572 (722)
|+||++.++.... ....+++|+|++|++++ ++|++|++++ .|. +|||++..|..-...|+.++
T Consensus 296 G~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~~gY~~~~ 370 (540)
T PRK13388 296 GSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFFEGYYNNP 370 (540)
T ss_pred ccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCcccccccCCh
Confidence 9999986554321 12356899999997753 5566676663 344 59999842111111222355
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
+.+++.|.. | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+|+|++++++..|
T Consensus 371 ~~t~~~~~~-----g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~g~~~~~~g 442 (540)
T PRK13388 371 EATAERMRH-----G--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVAVYAVPDERVG 442 (540)
T ss_pred HHHHHHhhc-----C--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEEEEEccCCCCC
Confidence 566666631 2 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCHHHHHHHHHHH--HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKA--IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~--l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+.+++++++.++...+.++++++++.+ |+.+++|. ++++++||+|++||++|++|+++....
T Consensus 443 -~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 443 -DQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred -ceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 788888888877667788999999864 99999995 448899999999999999999976554
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=578.09 Aligned_cols=499 Identities=19% Similarity=0.154 Sum_probs=364.7
Q ss_pred CCCCCCceEEEEecC-CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+.+... .+..+.++.+||+||+++++++|++|.+. +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 53 ~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 132 (660)
T PLN02861 53 VKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPL 132 (660)
T ss_pred HHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 478999999975310 01123456899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--C-cEEEEcCCCCCCC---CCCCCCCCCHHHHhc
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--L-KAIVLPAIGNDVG---IPLREQDLSWKDFLS 337 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 337 (722)
+|.++.+++.+++++++++++|+++... +.........+ . .++.+........ ........+|.++..
T Consensus 133 ~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02861 133 YDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSL 206 (660)
T ss_pred cCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHH
Confidence 9999999999999999999999976431 11111112111 1 2222211100000 000111245666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC-----CCCCCEEEEecCccccchh
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~-----~~~~d~~l~~~~~~~~~~~ 412 (722)
.... ........++|+++|+|||||||.||||++||++++..+......++ +.++|++++++|++|.++.
T Consensus 207 ~~~~-----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~ 281 (660)
T PLN02861 207 MGSL-----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQ 281 (660)
T ss_pred hCcc-----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHH
Confidence 3321 01122346799999999999999999999999999887765544433 4788999999999999887
Q ss_pred HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcC-----------------------------
Q 004952 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----------------------------- 463 (722)
Q Consensus 413 ~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----------------------------- 463 (722)
...+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..|.+..
T Consensus 282 ~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~ 359 (660)
T PLN02861 282 VIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKG 359 (660)
T ss_pred HHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence 55566899999998874 36788999999999999999999999886410
Q ss_pred --------CCCCC-------Cc-cceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccc
Q 004952 464 --------CLEGL-------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 527 (722)
Q Consensus 464 --------~~~~~-------~l-~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~i 527 (722)
..... .+ ++||.+++||+++++++.+ +...++..+++|.||+||+++.++..........+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsv 438 (660)
T PLN02861 360 LKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTV 438 (660)
T ss_pred CCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCc
Confidence 00000 01 5899999999999998755 4444444579999999999764443322222345799
Q ss_pred cccCCCceEEEEC--CCC-CcCCCCCCccceEEE-----ecccCCCccccccccccccceeccccCCCceecccCceEEE
Q 004952 528 STATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599 (722)
Q Consensus 528 G~p~~~~~~~vld--~~~-~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~ 599 (722)
|+|+++++++|+| +.| ..++.+. .|||++ ..||++ +++.|++.|.. | ||+|||+|++
T Consensus 439 G~p~p~~ev~i~d~~~~g~~~~~~~~--~GEi~vrGp~v~~GY~~------~pe~T~~~f~d-----G--w~~TGDlg~~ 503 (660)
T PLN02861 439 GVPMTTIEARLESVPEMGYDALSDVP--RGEICLRGNTLFSGYHK------RQDLTEEVLID-----G--WFHTGDIGEW 503 (660)
T ss_pred cCccCceEEEEEEccccCcccCCCCC--ceeEEEcCCcccccccC------CHHHHHhhhhc-----c--CcccCceEEE
Confidence 9999999999998 444 3344444 399998 345554 66788888841 3 9999999999
Q ss_pred ecCCcEEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC----------CC
Q 004952 600 TVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS 668 (722)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~----------~~ 668 (722)
|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.+. + +.++|+|++.... ..
T Consensus 504 d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~~---~-~~~~A~vv~~~~~l~~~~~~~~~~~ 578 (660)
T PLN02861 504 QPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNSF---E-SFLVAVVVPDRQALEDWAANNNKTG 578 (660)
T ss_pred CCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecCC---c-ceeEEEEEcCHHHHHHHHHHcCCCC
Confidence 999999999999999997 799999999999995 999999999999762 3 6899999986320 01
Q ss_pred CHH----------HHHHHHHHH-----HHhhcCCC-eee-cCCC-----CCCCCchhhHHHHHHHHhhhhhh
Q 004952 669 QPD----------KLKMIFSKA-----IQSKLNPL-FKV-VPEF-----PRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 669 ~~~----------~l~~~l~~~-----l~~~~~p~-~~~-v~~l-----P~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+.. .+.+.+.+. ++.+-.++ +.. -+.| .+|+++|+.|+.+.+.|++++++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~ 650 (660)
T PLN02861 579 DFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ 650 (660)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence 111 122223221 23333332 223 3456 89999999999999999998875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=614.16 Aligned_cols=498 Identities=17% Similarity=0.206 Sum_probs=395.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
++++||++|+++... +++||+||+++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|++|
T Consensus 625 a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 697 (1146)
T PRK08633 625 AKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNY 697 (1146)
T ss_pred HHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCC
Confidence 478999999986432 2899999999999999999755999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
.++.+++.+++++++++++++++............... ....+.+.+..... .. .....+.+....... +..
T Consensus 698 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~-~~~ 769 (1146)
T PRK08633 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL--PENVKVIYLEDLKA----KI-SKVDKLTALLAARLL-PAR 769 (1146)
T ss_pred CcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc--ccCceEEEeehhcc----cc-chhHHHHHHHHhccC-CHH
Confidence 99999999999999999999987543211100000000 00111222211000 00 000112222111100 000
Q ss_pred --CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH-HHHHHhhcC
Q 004952 346 --NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNG 422 (722)
Q Consensus 346 --~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G 422 (722)
.........++|+++++|||||||.||||+++|+++.+.+......++++++|++++..|+.|..+.. .++.+++.|
T Consensus 770 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g 849 (1146)
T PRK08633 770 LLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEG 849 (1146)
T ss_pred HHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCC
Confidence 00001234679999999999999999999999999999888887888999999999999999999984 478999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+...++..+++.++++++|++.++|++++.+.+.......+++++|.+++|||++++++.+++.+.+ +++++|
T Consensus 850 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~ 928 (1146)
T PRK08633 850 IKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILE 928 (1146)
T ss_pred CEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeec
Confidence 9999987667888999999999999999999999999886555566789999999999999999999888776 689999
Q ss_pred cccccccccccccCCcC---------CcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEE-----ecccCCCcc
Q 004952 503 SCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~ 567 (722)
.||+||++..++..... .....+++|+|+||++++|+| ++++++|.|+. |||++ ..||++
T Consensus 929 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~--- 1003 (1146)
T PRK08633 929 GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQVMKGYLG--- 1003 (1146)
T ss_pred ccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCCccccccC---
Confidence 99999998654433221 112457899999999999999 56899999996 99998 345555
Q ss_pred ccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCC--CcceeEEEe
Q 004952 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE--SILETAAIS 645 (722)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p--~V~~~~vv~ 645 (722)
+++.|++.|... +|.+||+|||+|++|+||+++++||.||+||++|++|+|.|||++|. +|| .+.+++|++
T Consensus 1004 ---~~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v~~ 1076 (1146)
T PRK08633 1004 ---DPEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVVFAVTA 1076 (1146)
T ss_pred ---CccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCceEEEEe
Confidence 555677666542 35679999999999999999999999999999999999999999995 898 567899999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 646 ~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++++..| ++++++++.. ..+.+++++++++ ++|.|++| .++.+++||+|+|||+||++|+++.++.
T Consensus 1077 ~~~~~~g-~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1077 VPDEKKG-EKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred ccCCCCC-cEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 9998888 8999999863 3456889998875 69999999 4559999999999999999999986653
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=553.07 Aligned_cols=469 Identities=20% Similarity=0.225 Sum_probs=378.5
Q ss_pred CCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 004952 189 EDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (722)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~ 266 (722)
.++++|+++.+. .+||+||.++++++|++|+++ +++|++|+++++|++++++++|||+++|++++|++|.
T Consensus 16 ~~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 87 (529)
T PRK07867 16 EDDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87 (529)
T ss_pred ccCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCC
Confidence 378999998776 999999999999999999996 8899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCC
Q 004952 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (722)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (722)
++.+++.+++++++++++++++... +....+ .....++.. ....|.+++..... .
T Consensus 88 ~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~----~~~~~~~~~-----------~~~~~~~~l~~~~~----~ 142 (529)
T PRK07867 88 RRGAALARDIAHADCQLVLTESAHA------ELLDGL----DPGVRVINV-----------DSPAWADELAAHRD----A 142 (529)
T ss_pred CChHHHHHHHHhCCCeEEEECHhHH------HHHHhh----ccCceEEEe-----------ccccHHHHhcccCC----C
Confidence 9999999999999999999997543 111111 111111111 11124444432211 1
Q ss_pred CCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH-HHHHHhhcCCEE
Q 004952 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATL 425 (722)
Q Consensus 347 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~l 425 (722)
........++++++++|||||||.||||+++|+++..........++++++|+++...|+.|..+++ .++.++..|+++
T Consensus 143 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 222 (529)
T PRK07867 143 EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222 (529)
T ss_pred CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence 1122335678999999999999999999999999988888777888999999999999999999884 466789999999
Q ss_pred EEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
++.+ ..++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+ +++++|.||
T Consensus 223 ~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG 298 (529)
T PRK07867 223 ALRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFG 298 (529)
T ss_pred EecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeec
Confidence 8876 467889999999999999999999999988764432233467884 56888887665 4455554 678999999
Q ss_pred ccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCC----------CccceEEE-e-----cccCCCccc
Q 004952 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQ----------PCVGEVGL-F-----PLYLGASDR 568 (722)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~----------~giGel~v-~-----~~y~~~~~~ 568 (722)
+||+++...... ....+++|.|+++ ++|+| +++++++.|+ ..+||+++ . .||++
T Consensus 299 ~TE~~~~~~~~~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~---- 369 (529)
T PRK07867 299 STEGGVAITRTP---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN---- 369 (529)
T ss_pred ccccccccccCC---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccC----
Confidence 999986443221 1234678999999 67888 5788899887 01399987 2 34444
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.+.+.|.. | ||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|. .||+|.+|+|+++++
T Consensus 370 --~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~V~g~~~ 439 (529)
T PRK07867 370 --DPEADAERMRG-----G--VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVAVYAVPD 439 (529)
T ss_pred --ChHhhhhhhcC-----C--eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccC
Confidence 44555555531 2 9999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHH--HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA--IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~--l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+..| +++++++++.++...+.++++++++++ |+.++.|. ++++++||+|++||++|+.|+++...
T Consensus 440 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 440 PVVG-DQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred CCCC-eeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 8888 899999999887778889999999876 99999994 55899999999999999999997643
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=548.55 Aligned_cols=451 Identities=20% Similarity=0.199 Sum_probs=375.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
.+..++++|+++.++ ++||+||.++++++|..|+ ++|+|++++++++++++++|||+++|++++|++|
T Consensus 10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 356799999999777 9999999999999999986 6899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
..+.+++.++++++++++++++.... . ...+...+.. ....+
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~-----~-------~~~~~~~~~~-------------~~~~~------------- 119 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD-----P-------AGLPHVPVRL-------------HARSW------------- 119 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc-----c-------ccccceeeec-------------ccccc-------------
Confidence 99999999999999999999976310 0 0000000000 00000
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCE
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (722)
.......+++++|++|||||||.||||+++|+++...+......+++.+++++++..|+.|..++ ..++.++..|++
T Consensus 120 --~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 197 (471)
T PRK07787 120 --HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR 197 (471)
T ss_pred --ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence 00112356899999999999999999999999999988877778889999999999999998887 568899999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+ ..++..+++.|+ +++|++.++|+++..|.+... ....++++|.+++||+++++.+.+++.+.+ +.+++|.|
T Consensus 198 ~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 273 (471)
T PRK07787 198 FVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERY 273 (471)
T ss_pred EEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeeccc
Confidence 99876 467889999999 999999999999999987532 234578999999999999999988887765 57899999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCC-CCCCccceEEEe-----cccCCCccccccccccccc
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p-~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~ 578 (722)
|+||++...+.. ........++|+|++++.++|+|+++++++ .|+. +|||++. .||++ +++.+++.
T Consensus 274 G~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~-~Gei~v~g~~~~~gy~~------~~~~t~~~ 345 (471)
T PRK07787 274 GMTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTLFDGYLN------RPDATAAA 345 (471)
T ss_pred CccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCCC-ceEEEEECcccchhhcC------Chhhchhc
Confidence 999998643322 222334568999999999999999999997 3432 5999993 34444 55567767
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeec-CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
|..+ .||+|||+|++++||.++++||+ |++||++|++|+|.|||++|. .+|.|.+++|++.++...+ +.++
T Consensus 346 ~~~~------~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 417 (471)
T PRK07787 346 FTAD------GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIV 417 (471)
T ss_pred ccCC------CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEE
Confidence 7543 29999999999999999999996 899999999999999999995 9999999999999887776 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHH
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+||++.. ..+.+++.++++++|+.++.| .++++++||+|+|||++|++|++
T Consensus 418 a~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 418 AYVVGAD--DVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEEeCC--CCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 9999843 356789999999999999999 45589999999999999999975
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=559.46 Aligned_cols=491 Identities=20% Similarity=0.233 Sum_probs=388.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+++.++ .+||+||.++++++|+.|. +. +++||+|++++++++++++++|||+++|++++|+
T Consensus 35 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 35 VAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred HHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEecc
Confidence 368899999998766 9999999999999999997 57 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCC-------------------CCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-------------------VGIP 324 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 324 (722)
+|.++.+++.+++++++++++++++... ..........+...+++...... ....
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999987432 11111111122111111100000 0000
Q ss_pred CCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC----CCCC-CE
Q 004952 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DV 399 (722)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~----~~~~-d~ 399 (722)
..+....+.+....... ...+.....++++++++|||||||.||||+++|+++...+.+....++ +.++ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 181 RINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 01122334444332211 111223456789999999999999999999999999887766554443 3444 46
Q ss_pred EEEecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEe
Q 004952 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (722)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (722)
++...++.|.++. ...+.++..|+++++.....++..+++.|+++++|++..+|+++..+.+.......++++||.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~ 336 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLG 336 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeee
Confidence 6777888888776 345677888999888776667888999999999999999999999999876555667889999999
Q ss_pred ecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 479 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
||+++++.+.+.+.+.+ ++++++.||+||++..++..........+++|.|++++.++|+|++++++|.|+. ||+++
T Consensus 337 gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v 413 (560)
T PRK08751 337 GGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI--GELCI 413 (560)
T ss_pred CCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999988887754 6789999999999865544332223445789999999999999999999999985 99999
Q ss_pred e-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
. .||++ +++.+++.|.. ..||+|||+|+++++|.++++||.||+||++|++|+|.|||++|.
T Consensus 414 ~~~~~~~gy~~------~~~~~~~~~~~------~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~- 480 (560)
T PRK08751 414 KGPQVMKGYWK------RPEETAKVMDA------DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA- 480 (560)
T ss_pred ecCccchhhcC------Chhhhhhcccc------CCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH-
Confidence 3 34444 55567666643 239999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
.||+|.+|+|+++++...| +.++++++.+ +...+.++++++++++++.|+.|. ++++++||+|++||++|++|++..
T Consensus 481 ~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~ 558 (560)
T PRK08751 481 MMPGVLEVAAVGVPDEKSG-EIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA 558 (560)
T ss_pred hCcCeeeeEEEecCCCCCC-ceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence 9999999999999988777 7788877765 345567899999999999999995 559999999999999999998763
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=553.08 Aligned_cols=481 Identities=18% Similarity=0.200 Sum_probs=393.1
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++|+++|+++.+. .+||.||.++++++|+.|.+. +++|++|++++++++++++++|||+++|++++|++|
T Consensus 23 ~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 94 (524)
T PRK06188 23 KRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94 (524)
T ss_pred HHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEeccc
Confidence 68999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
..+.+++..++++++++.+++++... ...........+. ..+.+.... ...++.......
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~- 156 (524)
T PRK06188 95 LGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVP------------DGVDLLAAAAKF- 156 (524)
T ss_pred CCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCcc------------chhhHHHhhhcc-
Confidence 99999999999999999999986421 0111111111111 111111100 011111111000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
..... .....++++++++|||||||.||||+++|+++.+.+......+++..++++++..|++|..+.. ++.+++.|+
T Consensus 157 ~~~~~-~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~ 234 (524)
T PRK06188 157 GPAPL-VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGG 234 (524)
T ss_pred Ccccc-cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCC
Confidence 00011 1122356799999999999999999999999999888888889999999999999999987764 678899999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.++++++|++.++|+++..|++.......+++++|.+++||++++++....+.+.+ ++.+++.
T Consensus 235 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~ 312 (524)
T PRK06188 235 TVIVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQY 312 (524)
T ss_pred EEEEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-Cchhhhe
Confidence 999987 46788999999999999999999999999987666666789999999999999999877776665 4679999
Q ss_pred ccccccccccccCCcC-----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccc
Q 004952 504 CGGTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNAD 573 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~ 573 (722)
||+||++.++...... ......++|+|++++.++|+|++++++|.|+. ||+++. .||++ ++.
T Consensus 313 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~ 384 (524)
T PRK06188 313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMDGYWN------RPE 384 (524)
T ss_pred eCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhhhhcC------ChH
Confidence 9999997554433221 22345689999999999999999999999985 999994 45544 334
Q ss_pred ccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
.+...|. ..||+|||++++++||.++++||.|++||++|.+|+|.+||++|. .||+|.+++|++.+++..+
T Consensus 385 ~~~~~~~-------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~- 455 (524)
T PRK06188 385 ETAEAFR-------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEKWG- 455 (524)
T ss_pred Hhhhhhc-------CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCcC-
Confidence 4444442 129999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+.++++++++++...+.++++++++++++.++.| .++++++||+|++||++|++|++.+.+
T Consensus 456 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 456 EAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred ceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence 8999999998766667789999999999999999 566999999999999999999999844
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=551.16 Aligned_cols=493 Identities=23% Similarity=0.282 Sum_probs=398.6
Q ss_pred cchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004952 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (722)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~l 251 (722)
+|.+++.+.... ++.+||++|++..+. .+||.||.++++++|++|.+. +++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNV-VEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHH-hcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 567777777542 367999999998766 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc-EEEEcCCCCCCCCCCCCCCC
Q 004952 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDL 330 (722)
Q Consensus 252 A~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 330 (722)
||+++|++++|+++.++.+++.++++.++++++++++... +.+.......+.. .++..... .....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 140 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRP-------EAGEV 140 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCC-------Ccccc
Confidence 9999999999999999999999999999999999987432 2222222222221 11111110 01223
Q ss_pred CHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHH-hhhhcCCCCCCEEEEecCcccc
Q 004952 331 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWV 409 (722)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~d~~l~~~~~~~~ 409 (722)
.+.++...... ...+....++++++++|||||||.||||+++|+++...+.. ....++++++|+++...|++|+
T Consensus 141 ~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 215 (508)
T TIGR02262 141 QLAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFA 215 (508)
T ss_pred cHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHH
Confidence 44444332221 11223345789999999999999999999999999876654 3456789999999999999999
Q ss_pred chh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchH
Q 004952 410 MGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488 (722)
Q Consensus 410 ~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~ 488 (722)
.++ ..++.++..|+++++.++..++..+++.|+++++|++.++|+++..++...........++|.+++||+++++++.
T Consensus 216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~ 295 (508)
T TIGR02262 216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVG 295 (508)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHH
Confidence 988 4577889999999998876788899999999999999999999998876544333456799999999999999998
Q ss_pred HHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccC
Q 004952 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYL 563 (722)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~ 563 (722)
+.|.+.+ ++++++.||+||++.+...... .....+++|+|++++.++|+|++++++|.|+. |||++. .+|+
T Consensus 296 ~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~gY~ 371 (508)
T TIGR02262 296 QRWQARF-GVDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATMYW 371 (508)
T ss_pred HHHHHHh-CCchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCccccccC
Confidence 8888766 5789999999999865443322 22345689999999999999999999999985 999994 3444
Q ss_pred CCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEE
Q 004952 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (722)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~v 643 (722)
+ +++.++..|. .+||+|||++++++||.++++||.||+||++|.+|+|.|||+.|. .||+|.++++
T Consensus 372 ~------~~~~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~~ 437 (508)
T TIGR02262 372 N------NRAKTRDTFQ-------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAAV 437 (508)
T ss_pred C------CHHHhHhhhh-------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEEE
Confidence 3 4555555553 139999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCC---CCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHH
Q 004952 644 ISVSPAGGGPEVLVIFVVLKKGFT---SQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
++.++...+ +++++|+++.++.. ...++++++++++|+.++.|. +..+++||+|++||++|+.|+++
T Consensus 438 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 438 VGVEDEDGL-IKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred EeccccCCC-ceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 998877666 78899998876542 235789999999999999995 55899999999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=558.14 Aligned_cols=499 Identities=22% Similarity=0.277 Sum_probs=386.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|++++++++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~ 105 (563)
T PRK06710 34 ASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105 (563)
T ss_pred HHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccC
Confidence 368999999998776 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCC------------------CCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI------------------PLR 326 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 326 (722)
|.++.+++.++++.++++++++++...... ..+........+++......... ...
T Consensus 106 p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 106 PLYTERELEYQLHDSGAKVILCLDLVFPRV------TNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cccCHHHHHHHHhccCCeEEEEeccchhhh------hccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 999999999999999999999987432111 11111111111111100000000 000
Q ss_pred -CC-CCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh-hcCCCC-CCEEEE
Q 004952 327 -EQ-DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKV-GDVYCW 402 (722)
Q Consensus 327 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~-~~~~~~-~d~~l~ 402 (722)
.. ...|..+..... .........+++++|++|||||||.||||+++|+++......... .++... ++++++
T Consensus 180 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 180 ESETIHLWNSVEKEVN-----TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccchhhhhhhhhhccc-----cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00 001111111000 001111224578999999999999999999999998755433222 234444 457888
Q ss_pred ecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecC
Q 004952 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (722)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge 481 (722)
..|+.|.++. ..++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|+........++++||.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 8999988887 34567899999999976 467789999999999999999999999998765555556789999999999
Q ss_pred CCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEec
Q 004952 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFP 560 (722)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~ 560 (722)
++++++..++.+.+ +++++|.||+||++..............+++|+|++++.++|+| ++++++|.|+. |||++..
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~--Gel~v~g 410 (563)
T PRK06710 334 PLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI--GEIVVKG 410 (563)
T ss_pred cCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--eEEEEec
Confidence 99999988887655 67899999999998654333222333456899999999999998 67899999985 9999932
Q ss_pred ccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcce
Q 004952 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640 (722)
Q Consensus 561 ~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~ 640 (722)
..+. ..|+.+++.+...|. ..||+|||++++++||.++++||.||+||++|.+|+|.|||++|. +||.|.+
T Consensus 411 ~~~~-~gY~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~-~~~~v~~ 481 (563)
T PRK06710 411 PQIM-KGYWNKPEETAAVLQ-------DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY-EHEKVQE 481 (563)
T ss_pred Cccc-hhhhCChHHHhhhcc-------cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-hCcceee
Confidence 2111 112224556665553 139999999999999999999999999999999999999999995 9999999
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 641 ~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++|++.+++..| +.++++++..++...+.++++++++++|+.++.|. +.++++||+|++||++|+.|++++..+-+
T Consensus 482 ~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~ 558 (563)
T PRK06710 482 VVTIGVPDPYRG-ETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNE 558 (563)
T ss_pred EEEEccccCCcC-ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCc
Confidence 999999988777 88999999888766778899999999999999995 55899999999999999999998876543
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=553.38 Aligned_cols=488 Identities=22% Similarity=0.226 Sum_probs=384.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||.||+++++++|.+|.+. +++||+|++++++++++++++|||+++|++++|++
T Consensus 31 ~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 102 (541)
T TIGR03205 31 AADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLS 102 (541)
T ss_pred HHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc-CCCcEEEEcCCCC-CC-----CCCCCCCCCCHHHHhc
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGN-DV-----GIPLREQDLSWKDFLS 337 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 337 (722)
|.++.+++.+++++++++.+++++.. ...+........ .....+++..... .. .........++.+++.
T Consensus 103 ~~~~~~~l~~~i~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 103 PLDGERALSHKLSDSGARLLITSDLA----ALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred CCCCHHHHHHHHhhcCceEEEEeCch----hhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 99999999999999999999997531 011111111111 1112222221100 00 0011123345666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh-----hcCCCCCCEEEEecCccccchh
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-----HIDLKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~d~~l~~~~~~~~~~~ 412 (722)
.... ........++++++++|||||||.||||+++|+++.+....... .......+++++..|+.|..+.
T Consensus 179 ~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 253 (541)
T TIGR03205 179 GAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253 (541)
T ss_pred cCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHH
Confidence 3221 11122345789999999999999999999999998765442211 1122345789999999998876
Q ss_pred -HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHH
Q 004952 413 -VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (722)
Q Consensus 413 -~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~ 491 (722)
..++.++..|+++++.. ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++
T Consensus 254 ~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~ 332 (541)
T TIGR03205 254 TVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFF 332 (541)
T ss_pred HHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHH
Confidence 45778899999988875 5678999999999999999999999999987544445567899999999999999998888
Q ss_pred HhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEE--CCCCCcCCCCCCccceEEEe-----cccCC
Q 004952 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPCVGEVGLF-----PLYLG 564 (722)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vl--d~~~~~~p~G~~giGel~v~-----~~y~~ 564 (722)
.+.+ +.++++.||+||++..++..........+++|.|++++.++|+ |+.+++++.|+. |||++. .||++
T Consensus 333 ~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~ 409 (541)
T TIGR03205 333 ERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV--GELRIRGPNVTRGYWN 409 (541)
T ss_pred HHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe--eEEEEecCCccccccC
Confidence 7654 5789999999999876554433333445789999999998875 677899999985 999984 24444
Q ss_pred CccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEE
Q 004952 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (722)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv 644 (722)
+++.+++.|.. + ||+|||++++++||+++++||.||+||++|+||+|.|||+.+. +||+|.+++|+
T Consensus 410 ------~~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~ 475 (541)
T TIGR03205 410 ------RPEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIY-EHPGVQEVIVI 475 (541)
T ss_pred ------ChhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHH-hCCCeeeEEEE
Confidence 44566666642 2 8999999999999999999999999999999999999999995 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHH
Q 004952 645 SVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+++++..+ +.+++++++.++.. .+.++++++++++|+.|++|. ++++++||+|++||++|++|+
T Consensus 476 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 476 GIPDQYRG-EAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred ecCCcccC-ceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 99988777 88999999887542 567899999999999999994 558999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=553.66 Aligned_cols=497 Identities=20% Similarity=0.213 Sum_probs=390.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|++..+. ++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~ 91 (540)
T PRK06164 20 ARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVN 91 (540)
T ss_pred HHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecC
Confidence 468999999996555 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc----CC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
+..+.+++.++++++++++++++++.. .++....+... .+ ...+++....... . ......+.+....
T Consensus 92 ~~~~~~~l~~~i~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 164 (540)
T PRK06164 92 TRYRSHEVAHILGRGRARWLVVWPGFK----GIDFAAILAAVPPDALPPLRAIAVVDDAADAT--P-APAPGARVQLFAL 164 (540)
T ss_pred CCCCcHHHHHHHHhcCccEEEEccccc----cccHHHHhhcccccccCCcceEEEeccCcccC--C-CCCcccccccccc
Confidence 999999999999999999999987542 11111111111 01 1222222110000 0 0000111111111
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (722)
.... ...........++++++++|||||||.||||+++|+++.+.+......+++.+++++++..|++|.+++..++.+
T Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 243 (540)
T PRK06164 165 PDPA-PPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGA 243 (540)
T ss_pred cccC-CcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHH
Confidence 0000 000001122346889999999999999999999999999988888888899999999999999999999889999
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec-CCCCcchHHHHHhhccC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG-ETSNVDDDLWLSSKAWY 497 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G-e~l~~~~~~~~~~~~~~ 497 (722)
+..|+++++.+ ..++..+++.|+++++|+++++|+++..|.+.. ....++++++.+.++| .....+...++... +
T Consensus 244 l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 319 (540)
T PRK06164 244 LAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--G 319 (540)
T ss_pred HhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--C
Confidence 99999999876 567789999999999999999999999998862 3455688999887776 44445556666544 6
Q ss_pred CcccccccccccccccccCCcCC--cCccccccccC-CCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 498 NAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
+++++.||+||++.+++...... .......|.|+ +++.++|+| +++++++.|+. |||++. .||++
T Consensus 320 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~---- 393 (540)
T PRK06164 320 VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES--GEIEIRAPSLMRGYLD---- 393 (540)
T ss_pred CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe--eEEEEecccccccccC----
Confidence 78999999999987554443322 12234567776 799999999 57899999985 999993 35554
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|+..|..+ .||+|||+|++++||.+++.||.||+||++|++|+|.|||++|. +||+|.+++|++++.
T Consensus 394 --~~~~t~~~~~~~------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~~~ 464 (540)
T PRK06164 394 --NPDATARALTDD------GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGATR 464 (540)
T ss_pred --CchhhhhcccCC------CceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEecCC
Confidence 566777776542 39999999999999999999999999999999999999999995 999999999999884
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCc---hhhHHHHHHHHhhhhhhc
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASN---KLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~G---KvdR~~L~~~~~~~~~~~ 719 (722)
. ++ ..+++++++.++...+.++++++++++||.+++| .+++++++|+|++| |++|+.|++++++..+++
T Consensus 465 ~-~~-~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 465 D-GK-TVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred C-Cc-eeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 3 34 7899999998776677899999999999999999 56699999999999 999999999877765543
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=555.02 Aligned_cols=490 Identities=23% Similarity=0.258 Sum_probs=387.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||+||+++++++|.+|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~ 104 (557)
T PRK07059 33 FRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104 (557)
T ss_pred HHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcC-CCCC-----------------CCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA-IGND-----------------VGIPLR 326 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~ 326 (722)
|.++.+++.+++++++++++++++... +....+........+.+.. .... ......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (557)
T PRK07059 105 PLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL 178 (557)
T ss_pred cccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence 999999999999999999999987432 1111111111111111110 0000 000011
Q ss_pred CCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh----cCCC---CCCE
Q 004952 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLK---VGDV 399 (722)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~----~~~~---~~d~ 399 (722)
++...+.+.+..... .........++++|+++|||||||.||||+++|++++..+...... +... ....
T Consensus 179 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 179 PGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred CCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 223445555443221 1112234567899999999999999999999999987655432211 1111 2346
Q ss_pred EEEecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEe
Q 004952 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (722)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (722)
++...|+.|.++. ...+.++..|++.++.+...++..+++.++++++|.+.++|+++..|.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 7778888887775 456678889999888775557788999999999999999999999998876555667889999999
Q ss_pred ecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 479 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
||+++++.+.+++.+.+ ++++++.||+||++.++............++|+|++++.++|+|++++++|.|+. |||++
T Consensus 335 gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~--Gel~v 411 (557)
T PRK07059 335 GGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEP--GEICI 411 (557)
T ss_pred ccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999888877664 6899999999999876544433222345789999999999999999999999995 99999
Q ss_pred e-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
. .||++ +++.+...|..+ .||+|||+|++++||.++++||+||+||++|++|+|.|||++|.
T Consensus 412 ~g~~~~~gY~~------~~~~~~~~~~~~------g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~- 478 (557)
T PRK07059 412 RGPQVMAGYWN------RPDETAKVMTAD------GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA- 478 (557)
T ss_pred eCCccchhhhc------CHHHHhhhcccC------CceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH-
Confidence 4 34444 455565555432 29999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
.||+|.+++|+++++...| +.++++++..+. ..+.++++++++++|+.++.|. +.++++||+|++||++|+.|+++
T Consensus 479 ~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 479 SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred hCCceeEEEEEecccCCCC-eeEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 9999999999999988777 889999887653 4566899999999999999995 44899999999999999999864
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-62 Score=554.05 Aligned_cols=513 Identities=20% Similarity=0.223 Sum_probs=396.9
Q ss_pred CcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004952 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (722)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~ 244 (722)
-|++....+..+.+ ..+ ++.+|+++|+.+.+. .+||+||+++++++|.+|.+. +++||+|+++++|++
T Consensus 26 ~~~~~~~~~l~~~l-~~~--a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~ 94 (567)
T PRK06178 26 PEYPHGERPLTEYL-RAW--ARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCP 94 (567)
T ss_pred CCCCcCcccHHHHH-HHH--HHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCc
Confidence 35555544444332 222 357899999998776 999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCC-C--
Q 004952 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-V-- 321 (722)
Q Consensus 245 ~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 321 (722)
++++++|||+++|++++|++|.++..++.+++++++++++++++... +.+..+........+++...... .
T Consensus 95 ~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~ 168 (567)
T PRK06178 95 QFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAE 168 (567)
T ss_pred HHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEeccccccccc
Confidence 99999999999999999999999999999999999999999987532 22222222222222222111000 0
Q ss_pred -CCCCCC-------CCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh-hc
Q 004952 322 -GIPLRE-------QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HI 392 (722)
Q Consensus 322 -~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~-~~ 392 (722)
...... ....+.++.+.... ...........++++|+++|||||||.||||+++|++++........ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~ 246 (567)
T PRK06178 169 PTLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAV 246 (567)
T ss_pred cccccccccccccccccccccHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhc
Confidence 000000 00112222221111 01111123345799999999999999999999999998876554433 35
Q ss_pred CCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCcc
Q 004952 393 DLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471 (722)
Q Consensus 393 ~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~ 471 (722)
.+.++++++...|+.|..+. ..++.++.+|+++++.+ ..++..++..|+++++|.+.++|..+..+.........+++
T Consensus 247 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~ 325 (567)
T PRK06178 247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS 325 (567)
T ss_pred cCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence 67889999999999999887 56888999999999987 56788999999999999999999999999876544555678
Q ss_pred ceeEEEe--ecCCCCcchHHHHHhhccCCcccccccccccccccccCCc--CC----cCccccccccCCCceEEEEC-CC
Q 004952 472 KIRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQ----PQAFGAFSTATMTAGLVILD-EC 542 (722)
Q Consensus 472 ~Lr~i~~--~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~----~~~~~~iG~p~~~~~~~vld-~~ 542 (722)
+++.+.. .|+.++++..+.+...++...+.+.||+||++.++..... .. ...++++|+|++|++++|+| ++
T Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~ 405 (567)
T PRK06178 326 SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFET 405 (567)
T ss_pred hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCC
Confidence 8888654 4589999988888876654344568999998754333221 11 12346799999999999999 67
Q ss_pred CCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeec
Q 004952 543 GVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (722)
Q Consensus 543 ~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~ 617 (722)
++++|.|+. |||++. .||++ +++.++..|. +| ||+|||+|++++||+++++||+||+||+
T Consensus 406 ~~~~~~g~~--Gel~v~g~~v~~gY~~------~~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~ 470 (567)
T PRK06178 406 GELLPLGAE--GEIVVRTPSLLKGYWN------KPEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKV 470 (567)
T ss_pred CCcCCCCCc--eEEEEECCcccccccC------Chhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEE
Confidence 999999985 999983 34444 4555655553 23 9999999999999999999999999999
Q ss_pred CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCCeeecCCCCC
Q 004952 618 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEFPR 697 (722)
Q Consensus 618 ~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~v~~lP~ 697 (722)
+|++|+|.|||++|. .+|+|.+++|++.+++..| +.++++|+++++...+.++++++++++++.+++|.+.++++||+
T Consensus 471 ~G~~i~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~v~~iP~ 548 (567)
T PRK06178 471 NGMSVFPSEVEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPEIRIVDALPM 548 (567)
T ss_pred CCEEECHHHHHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCceEEEeccCCC
Confidence 999999999999995 9999999999999888777 88999999987766778899999999999999998668999999
Q ss_pred CCCchhhHHHHHHHHhhh
Q 004952 698 TASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 698 t~~GKvdR~~L~~~~~~~ 715 (722)
|++||++|+.|++++++.
T Consensus 549 t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 549 TATGKVRKQDLQALAEEL 566 (567)
T ss_pred CCccceeHHHHHHHHHhh
Confidence 999999999999988753
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=548.42 Aligned_cols=474 Identities=19% Similarity=0.214 Sum_probs=390.9
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+.+|+++|+.+.+. .+||+||.++++++|..|.+. +++|++|+++++++.++++++|||+++|++++|+++
T Consensus 13 ~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 13 QTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 57899999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (722)
.++.+++.++++.++++++++++...... ... ..+.++++...... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----------------~~~~~~~~~~~~~~--~~ 132 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGI----------------PVITLDELKDIFAT--GN 132 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEecccccccc--------------cCC----------------cEEehHHhhhhhhc--cc
Confidence 99999999999999999999987431000 000 00111111111000 00
Q ss_pred CCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEE
Q 004952 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (722)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~l 425 (722)
.........++++++++|||||||.||||.++|+++...+.+....+++..+++++...|++|+.+.+.++.+|..|+++
T Consensus 133 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~ 212 (503)
T PRK04813 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTL 212 (503)
T ss_pred cccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEE
Confidence 01112234678899999999999999999999999998888888888999999999999999999998889999999999
Q ss_pred EEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 426 ALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 426 v~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++.+.. .++..+++.++++++|++.++|++++.+.........+++++|.++++|+++++.+.+++.+.++++++++.
T Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~ 292 (503)
T PRK04813 213 VALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNT 292 (503)
T ss_pred EEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeC
Confidence 998753 367789999999999999999999988766544445568899999999999999999999998888899999
Q ss_pred ccccccccccccCCc----CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccc
Q 004952 504 CGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (722)
Q Consensus 504 YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (722)
||+||++..++.... .......++|+|.++++++|+|++|.++|.|+. ||+++. .||++ +++.
T Consensus 293 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 364 (503)
T PRK04813 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKGYLN------NPEK 364 (503)
T ss_pred cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccccCC------ChhH
Confidence 999999764433211 112344579999999999999999999999985 999983 45655 4445
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
+...|..+ .|.+||+|||+|++ .||++++.||.||+||++|.+|+|.|||+.|. .||+|.+++|++.++...+ +
T Consensus 365 ~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~ 438 (503)
T PRK04813 365 TAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV-Q 438 (503)
T ss_pred hHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-c
Confidence 55555432 35579999999999 99999999999999999999999999999995 9999999999998776655 8
Q ss_pred EEEEEEEecCCCCC-C---HHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 655 VLVIFVVLKKGFTS-Q---PDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 655 ~l~a~vv~~~~~~~-~---~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
.+++++++.++... . .++++++++++++.+++| .++++++||+|+|||++|++|++.+++
T Consensus 439 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 439 YLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred EEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 89999998764211 1 146899999999999999 555899999999999999999998753
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=539.34 Aligned_cols=428 Identities=15% Similarity=0.118 Sum_probs=348.0
Q ss_pred eecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEe
Q 004952 209 LMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286 (722)
Q Consensus 209 ~lTY~eL~~~~~~lA~~L~~~-v-~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~ 286 (722)
-+.|+||+++++++|++|++. + ++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 478999999999999999999 7 67999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCC
Q 004952 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366 (722)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSG 366 (722)
++.... . . . .. ... ......++++++++||||
T Consensus 99 ~~~~~~------~---~----------~-------------~~---------~~~-------~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKL------S---H----------P-------------PP---------LPS-------QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCcccc------c---c----------C-------------CC---------CCc-------cccCCCCCCcEEEEeCCC
Confidence 764210 0 0 0 00 000 001124589999999999
Q ss_pred CCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCC
Q 004952 367 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446 (722)
Q Consensus 367 STG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~v 446 (722)
|||.||||++||+++...+.+....+++.+ +++++..|++|.+++..++.+|+.|+++++.+.. ..........++++
T Consensus 131 TTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~ 208 (452)
T PRK07445 131 SSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSD 208 (452)
T ss_pred CCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCc
Confidence 999999999999999888877666677755 4678889999999998888999999999998632 11222344457899
Q ss_pred cEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCC-cCccc
Q 004952 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG 525 (722)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~ 525 (722)
|++.++|++++.+++.. ...+++||.+++||+++++++.+.+... +++++|.||+||++..+....+.. .....
T Consensus 209 t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 283 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNN 283 (452)
T ss_pred eEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCC
Confidence 99999999999998632 3347899999999999999988776542 678999999999976443332211 12346
Q ss_pred cccccCCCceEEEECCCCCcCCCCCCccceEEEe-cccCCCccccccccccccceeccccCCCceecccCceEEEecCCc
Q 004952 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (722)
Q Consensus 526 ~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~ 604 (722)
++|+|+++++++|+ .|+ +|||++. +....+ |++. +. ...+||+|||+|++|+||+
T Consensus 284 ~~G~~~p~~~v~i~--------~g~--~Gel~v~g~~~~~g---Y~~~----------~~-~~~g~~~TGDl~~~d~dG~ 339 (452)
T PRK07445 284 SSGQVLPHAQITIP--------ANQ--TGNITIQAQSLALG---YYPQ----------IL-DSQGIFETDDLGYLDAQGY 339 (452)
T ss_pred cCCccCCCCeEEEc--------CCC--cceEEEeCCccchh---hcCC----------cc-CCCCEEECCCEEEEcCCCC
Confidence 79999999999998 355 3999983 322211 1111 10 1234999999999999999
Q ss_pred EEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh
Q 004952 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684 (722)
Q Consensus 605 l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~ 684 (722)
++|.||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++|+++.+++ ..+.++++++++++|+.|
T Consensus 340 l~~~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~ 416 (452)
T PRK07445 340 LHILGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKDP-SISLEELKTAIKDQLSPF 416 (452)
T ss_pred EEEEeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCCC-CCCHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999995 9999999999999998877 889999998765 456789999999999999
Q ss_pred cCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 685 LNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 685 ~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
++|. ++++++||+|++||++|++|++++++++..
T Consensus 417 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 451 (452)
T PRK07445 417 KQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLGL 451 (452)
T ss_pred cCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhCC
Confidence 9995 558999999999999999999999988753
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=547.70 Aligned_cols=465 Identities=18% Similarity=0.187 Sum_probs=374.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+||++|+++.+. .+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 45 a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~ 116 (516)
T PRK13383 45 AARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPIS 116 (516)
T ss_pred HHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcC
Confidence 468999999998665 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
+.++.+++.+++++++++++++++.... .+. ........+... . ... ...
T Consensus 117 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~-~~~~~~~~~~~~-----------~---~~~-~~~----- 166 (516)
T PRK13383 117 TEFRSDALAAALRAHHISTVVADNEFAE---------RIA-GADDAVAVIDPA-----------T---AGA-EES----- 166 (516)
T ss_pred ccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHH-hhhcceEEeccc-----------h---hhh-hcC-----
Confidence 9999999999999999999999875421 111 111112222100 0 000 000
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHH--HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
...+...++.++++|||||||.||||+++|+.... ........+++.++++++...|++|.+++..++.++..|
T Consensus 167 ----~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G 242 (516)
T PRK13383 167 ----GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALG 242 (516)
T ss_pred ----CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcC
Confidence 00111235678999999999999999999984322 112223456788999999999999999998888899999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
+++++.. ..++..+++.++++++|.+.++|+++..|...... ...+++++|.+++||+++++++.+++.+.+ +.++
T Consensus 243 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v 320 (516)
T PRK13383 243 GTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDIL 320 (516)
T ss_pred CEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchh
Confidence 9998865 56788999999999999999999999999865321 234578999999999999999999888776 5789
Q ss_pred cccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCcccccccccccccee
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR 580 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~ 580 (722)
++.||+||++..+...........+++|+|+++++++|+|+++++++.|+. |||++...... .+|.+... ..+
T Consensus 321 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~--~~Y~~~~~--~~~- 393 (516)
T PRK13383 321 YNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAG--TRYTDGGG--KAV- 393 (516)
T ss_pred hhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCccc--ccccCCch--hhe-
Confidence 999999999865443322223345789999999999999999999999985 99998422111 11222211 111
Q ss_pred ccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEE
Q 004952 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (722)
Q Consensus 581 ~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~v 660 (722)
.. .||+|||+|+++++|++++.||.||+||++|++|+|.|||.+|. +||+|.+++|++.++...+ +.++++|
T Consensus 394 ----~~--g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~v 465 (516)
T PRK13383 394 ----VD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-HRLAAFV 465 (516)
T ss_pred ----ec--CceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEE
Confidence 12 39999999999999999999999999999999999999999995 9999999999999988777 8899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHH
Q 004952 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+++++...+.++++++++++++.++.|. ++++++||+|++||++|++|+
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 466 VLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 9887666677899999999999999994 558999999999999999985
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=551.16 Aligned_cols=500 Identities=20% Similarity=0.243 Sum_probs=385.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++.+|+++|+++.+. .+||+||+++++++|..|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 30 ~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 101 (567)
T PLN02479 30 AVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVN 101 (567)
T ss_pred HhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEec
Confidence 367899999998665 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc---------CCCcEEEEcCCCCCC---CCCCCCCCCCH
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---------APLKAIVLPAIGNDV---GIPLREQDLSW 332 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~~~ 332 (722)
|.++.+++.+++++++++++++++... +....+... .....+++....... ......+...|
T Consensus 102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
T PLN02479 102 IRLNAPTIAFLLEHSKSEVVMVDQEFF------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEY 175 (567)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhh------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccH
Confidence 999999999999999999999987542 111111111 011223332111000 00111234456
Q ss_pred HHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh
Q 004952 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (722)
.+++..... . .........+++++++|||||||.||||+++|+++..........+++.+++++++..|++|..+.
T Consensus 176 ~~~~~~~~~---~-~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~ 251 (567)
T PLN02479 176 EKFLETGDP---E-FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
T ss_pred HHHHhcccc---c-cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhH
Confidence 666554221 0 000112234578889999999999999999999987666555567788899999999999998887
Q ss_pred HHHHH-HhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCC-CCccceeEEEeecCCCCcchHHH
Q 004952 413 VILFS-SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLW 490 (722)
Q Consensus 413 ~~~~~-~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~-~~l~~Lr~i~~~Ge~l~~~~~~~ 490 (722)
...+. ++..|.++++ . ..++..+++.++++++|++.++|++++.|.+...... .++++++.++++|+++++.+.++
T Consensus 252 ~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~ 329 (567)
T PLN02479 252 CFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFA 329 (567)
T ss_pred HHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHH
Confidence 44443 4555555544 3 4678899999999999999999999999987643222 25789999999999999999888
Q ss_pred HHhhccCCcccccccccccccccccCCcC---------Cc-CccccccccCCCce-EEEEC-CCCCcCCCCCCccceEEE
Q 004952 491 LSSKAWYNAIIESCGGTELSSAYIQGSLL---------QP-QAFGAFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---------~~-~~~~~iG~p~~~~~-~~vld-~~~~~~p~G~~giGel~v 558 (722)
+.+. +.++++.||+||+++.++..... .. ......|.+.++.. ++|+| +.++++|.+...+|||++
T Consensus 330 ~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v 407 (567)
T PLN02479 330 MSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVM 407 (567)
T ss_pred HHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEE
Confidence 7654 57899999999986433221100 00 01135678888875 88999 568888764211599999
Q ss_pred e-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhc
Q 004952 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
. +||++ +++.|++.|.. .||+|||+|+++++|+++|+||.||+||++|+||+|.|||++|.
T Consensus 408 ~g~~~~~GY~~------~~~~t~~~~~~-------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~- 473 (567)
T PLN02479 408 RGNMVMKGYLK------NPKANEEAFAN-------GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY- 473 (567)
T ss_pred eccchhhhhhc------CcccccchhcC-------CceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH-
Confidence 3 45555 55677777642 29999999999999999999999999999999999999999995
Q ss_pred cCCCcceeEEEeecCCCCCceEEEEEEEecCCCC-----CCHHHHHHHHHHHHHhhcCCCeeecCCCCCCCCchhhHHHH
Q 004952 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 634 ~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~~~v~~lP~t~~GKvdR~~L 708 (722)
.||.|.+++|++.+++..+ +.+++++++.++.. ...++|+++++++||.|+.|..+.+++||+|++||++|+.|
T Consensus 474 ~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L 552 (567)
T PLN02479 474 THPAVLEASVVARPDERWG-ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVL 552 (567)
T ss_pred hCcccceeeEEeccchhcC-ceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEeccCCCCCccCeeHHHH
Confidence 9999999999999887766 88999999876532 23468899999999999999777668899999999999999
Q ss_pred HHHHhh-hhhhcccC
Q 004952 709 RDQIKH-ELSVRSRI 722 (722)
Q Consensus 709 ~~~~~~-~~~~~~~~ 722 (722)
++.+.. .+.++|||
T Consensus 553 ~~~~~~~~~~~~~~~ 567 (567)
T PLN02479 553 RAKAKEMGPVKKSRL 567 (567)
T ss_pred HHHHHhhCCcccccC
Confidence 888766 67788876
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-61 Score=539.08 Aligned_cols=485 Identities=20% Similarity=0.199 Sum_probs=382.6
Q ss_pred eEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHH
Q 004952 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE 271 (722)
Q Consensus 193 ~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~ 271 (722)
.|++.+++ .+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 36666555 999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcE--EEEcCCCC-------CCC-CCCCCCCCCHHHHhcccCC
Q 004952 272 IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA--IVLPAIGN-------DVG-IPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 272 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~ 341 (722)
+.++++++++++++++..... .+.+..+..+ +.+..... ... .........|++.......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP 145 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc
Confidence 999999999999999874321 1111111111 11110000 000 0112233456555432211
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHH
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (722)
.....++++++++|||||||.||||+++|.+..+ ........+++.++++++...|+.|..+....+.+
T Consensus 146 --------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (509)
T PRK12406 146 --------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRA 217 (509)
T ss_pred --------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHH
Confidence 1123468999999999999999999998765433 33334456788999999999999998887666778
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhcc
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~ 496 (722)
+..|+++++.+ ..++..+++.++++++|++.++|+++..|+.... ....++++||.+++||+++++++.+++.+.+
T Consensus 218 ~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~- 295 (509)
T PRK12406 218 GRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW- 295 (509)
T ss_pred HhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-
Confidence 89999999876 4678899999999999999999999999987543 2345678999999999999999998888765
Q ss_pred CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccc
Q 004952 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576 (722)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~ 576 (722)
++.+++.||+||++.+...........++++|+|++++.++|+|+++++++.|+. ||+++.........++.+++.++
T Consensus 296 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~~~y~~~~~~~~ 373 (509)
T PRK12406 296 GPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPDFTYHNKPEKRA 373 (509)
T ss_pred CCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCccccccccCCchhcc
Confidence 5789999999999875543332233445789999999999999999999999985 99999432111111222344444
Q ss_pred cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 577 ~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
..+. ..||+|||+|++++||.+++.||.||+||++|++|++.|||+.|. .+|+|.+++|++.++...+ +.+
T Consensus 374 ~~~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~ 444 (509)
T PRK12406 374 EIDR-------GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EAL 444 (509)
T ss_pred cccC-------CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-cee
Confidence 3321 239999999999999999999999999999999999999999995 8999999999999887766 789
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++++++.++...+.++++++++++|+.|++|. +.++++||+|++||++|++|++.+...
T Consensus 445 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 445 MAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 99999887656677999999999999999994 558999999999999999999877653
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-61 Score=545.61 Aligned_cols=495 Identities=21% Similarity=0.251 Sum_probs=386.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+++.+. .+||+||.++++++|.+|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 104 (560)
T PRK08974 33 VARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNV 104 (560)
T ss_pred HHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEecc
Confidence 368999999998665 99999999999999999985 7 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCC-------------------C
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI-------------------P 324 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 324 (722)
+|.++.+++.+++++++++++++++... +....+........+.+......... .
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08974 105 NPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKY 178 (560)
T ss_pred CccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccc
Confidence 9999999999999999999999976421 11222221111112111110000000 0
Q ss_pred CCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC---CCCCCEEE
Q 004952 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---LKVGDVYC 401 (722)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~d~~l 401 (722)
..+...++.+..+.... .........++++++++|||||||.||||.++|+++...+......+. ...++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
T PRK08974 179 HLPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254 (560)
T ss_pred cCCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEE
Confidence 00011122222221111 011112345789999999999999999999999999876654333222 23456778
Q ss_pred EecCccccchh-HHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
...++.|.++. ...+.++.+|+++++.....++..+++.++++++|++..+|++++.|.........++++||.+++||
T Consensus 255 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg 334 (560)
T PRK08974 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGG 334 (560)
T ss_pred EeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecC
Confidence 88888887775 45667788999988876555778899999999999999999999999876555556678999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF- 559 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~- 559 (722)
+++++.+.+++.+.+ ++++++.||+||++..+...........+++|.|++++.++|+|++++++|.|+. |||++.
T Consensus 335 ~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g 411 (560)
T PRK08974 335 MAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP--GELWVKG 411 (560)
T ss_pred ccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--eEEEEec
Confidence 999999888887654 6899999999999876554433333445789999999999999999999999995 999993
Q ss_pred ----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccC
Q 004952 560 ----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (722)
Q Consensus 560 ----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~ 635 (722)
.+|++ +++.++..|. . .||+|||+++++++|.++++||.||+||++|++|+|.+||++|. .|
T Consensus 412 ~~~~~gy~~------~~~~~~~~~~-----~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~-~~ 477 (560)
T PRK08974 412 PQVMLGYWQ------RPEATDEVIK-----D--GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM-LH 477 (560)
T ss_pred CCcchhhcC------Chhhhhhhhh-----c--CCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hC
Confidence 34443 4555665552 1 29999999999999999999999999999999999999999995 99
Q ss_pred CCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 636 p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
|+|.+++|++.++...+ +.++++++..+ ...+.++++++++++|+.++.|. +.++++||+|++||++|+.|++....
T Consensus 478 ~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 555 (560)
T PRK08974 478 PKVLEVAAVGVPSEVSG-EAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARA 555 (560)
T ss_pred CCeeEEEEEeeecCCcc-eEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHh
Confidence 99999999999988777 77888887654 34556889999999999999994 55899999999999999999998776
Q ss_pred hhh
Q 004952 715 ELS 717 (722)
Q Consensus 715 ~~~ 717 (722)
+..
T Consensus 556 ~~~ 558 (560)
T PRK08974 556 KVD 558 (560)
T ss_pred hhc
Confidence 654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=540.25 Aligned_cols=496 Identities=21% Similarity=0.221 Sum_probs=381.4
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+.+|+++|+.+.+. .+||+||.++++++|++|.+. +++||+|++++++++++++++|||+++|++++|++|
T Consensus 29 ~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~ 100 (545)
T PRK08162 29 EVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT 100 (545)
T ss_pred HHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEecccc
Confidence 68899999998766 899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
.++.+++.+++++++++.++++.... +.........+. +.+++.............+..++.+++.....
T Consensus 101 ~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (545)
T PRK08162 101 RLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP--- 171 (545)
T ss_pred ccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc---
Confidence 99999999999999999999987532 112222222222 13333322111000001123345555543221
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
..........+++++++|||||||.||||+++|+++..........+++..++++++..|+.|..+....+...+.|++
T Consensus 172 -~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~ 250 (545)
T PRK08162 172 -DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGT 250 (545)
T ss_pred -cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccE
Confidence 0011112234679999999999999999999999976666555566778889999999999998887544444455666
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
.++.. ..++..+++.|+++++|++.++|++++.|++........+.+++.++++|+.+++...+++... ++++++.|
T Consensus 251 ~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~Y 327 (545)
T PRK08162 251 NVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVY 327 (545)
T ss_pred EEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeecc
Confidence 65554 4678899999999999999999999999987654333345567778899999998888877653 67899999
Q ss_pred cccccccccccCCcC------C----cCccccccccCC-CceEEEECC-CCCcCCCCCCccceEEEe-----cccCCCcc
Q 004952 505 GGTELSSAYIQGSLL------Q----PQAFGAFSTATM-TAGLVILDE-CGVPYPDDQPCVGEVGLF-----PLYLGASD 567 (722)
Q Consensus 505 G~TE~~~~~~~~~~~------~----~~~~~~iG~p~~-~~~~~vld~-~~~~~p~G~~giGel~v~-----~~y~~~~~ 567 (722)
|+||+++.+...... . .....+.|.+.+ +..++|+|+ .++++|.+...+|||++. .||++
T Consensus 328 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~--- 404 (545)
T PRK08162 328 GLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLK--- 404 (545)
T ss_pred cccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcC---
Confidence 999986433322110 0 111245566655 346889994 788887632115999993 35554
Q ss_pred ccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeec
Q 004952 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (722)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~ 647 (722)
+++.+...|.. .||+|||+|++++||.++|+||.||+||++|.||+|.|||++|. .||+|.+++|++.+
T Consensus 405 ---~~~~~~~~~~~-------g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~ 473 (545)
T PRK08162 405 ---NPKATEEAFAG-------GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVAKP 473 (545)
T ss_pred ---ChhhhHHHhhC-------CCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEeee
Confidence 55566666642 29999999999999999999999999999999999999999995 99999999999998
Q ss_pred CCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCCeeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
++..+ +.+++|++++++...+.+++++++++.|+.|++|..+.+++||+|+|||++|+.|++.+....++
T Consensus 474 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~~ 543 (545)
T PRK08162 474 DPKWG-EVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKAI 543 (545)
T ss_pred ccccC-ceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhhh
Confidence 87776 88999999888766678899999999999999997665678999999999999999987665544
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=554.79 Aligned_cols=489 Identities=15% Similarity=0.108 Sum_probs=372.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+..+++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 49 a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~ 125 (614)
T PRK08180 49 AQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVS 125 (614)
T ss_pred HHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeec
Confidence 368999999987532 12245899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-----HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 265 DSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 265 p~~~-----~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|.++ .+++.+++++++++++|+++.... ........ ......++..... .......|.++....
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~-~~~~~~i~~~~~~------~~~~~~~~~~~~~~~ 194 (614)
T PRK08180 126 PAYSLVSQDFGKLRHVLELLTPGLVFADDGAAF----ARALAAVV-PADVEVVAVRGAV------PGRAATPFAALLATP 194 (614)
T ss_pred cccccccCCHHHHHHHHhcCCCcEEEEcCHHHH----HHHHhhhc-cCCceEEEecCCC------CCcccccHHHHhccc
Confidence 9998 799999999999999999753100 00000000 0111222221100 001134566665432
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCC--CCCEEEEecCccccchh-HHHH
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGP-VILF 416 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~-~~~~ 416 (722)
.. ...........++++++|+|||||||.||||++||+++...+......+++. .+++++++.|++|.++. +.++
T Consensus 195 ~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~ 272 (614)
T PRK08180 195 PT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLG 272 (614)
T ss_pred cc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHH
Confidence 11 0001111234579999999999999999999999999988877666666653 56899999999999887 5677
Q ss_pred HHhhcCCEEEEecCCCCh---hhHHHHHHHhCCcEEechhHHHHHHHhcCC----CCCCCccceeEEEeecCCCCcchHH
Q 004952 417 SSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDDL 489 (722)
Q Consensus 417 ~~L~~G~~lv~~~~~~~~---~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~Lr~i~~~Ge~l~~~~~~ 489 (722)
.+|++|+++++.+..+++ ..+++.++++++|+++++|+++..|++... ....++++||.+++||+++++++.+
T Consensus 273 ~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~ 352 (614)
T PRK08180 273 IVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWD 352 (614)
T ss_pred HHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHH
Confidence 899999999997644443 367888999999999999999999876421 1234578999999999999999988
Q ss_pred HHHhh----cc-CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----
Q 004952 490 WLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF----- 559 (722)
Q Consensus 490 ~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~----- 559 (722)
++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|++ . .|||++.
T Consensus 353 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~GEi~vrg~~v~ 422 (614)
T PRK08180 353 RLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--KLEVRVKGPNVT 422 (614)
T ss_pred HHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--CcEEEEecCccc
Confidence 87764 22 3679999999999865443322 23456799999999999999852 2 3899983
Q ss_pred cccCCCccccccccccccceeccccCCCceecccCceEEE----ecCCcEEEEeecCCeeec-Cceeec--hHHHHHHHh
Q 004952 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR----TVGGYIIVQGRADDTMNL-GGIKTS--SVEIERVCD 632 (722)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~----~~dG~l~~~GR~dd~ik~-~G~ri~--~~eIE~~l~ 632 (722)
.||++ +++.|++.|..+ +||+|||+|++ |+||+++|+||+||+||+ +|++|+ +.|||.++.
T Consensus 423 ~GY~~------~p~~t~~~~~~d------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~ 490 (614)
T PRK08180 423 PGYWR------APELTAEAFDEE------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA 490 (614)
T ss_pred hhhcC------ChhHhHhhcccC------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh
Confidence 45555 556777777532 39999999999 468999999999999985 698776 788999884
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCC---------------CCCHHHHHHHHHHHHHhhc--------CC-C
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGF---------------TSQPDKLKMIFSKAIQSKL--------NP-L 688 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~---------------~~~~~~l~~~l~~~l~~~~--------~p-~ 688 (722)
.||.|.+|+|++.++ +.+.|+|+++++. ..+.++|++++++.|..+. .| +
T Consensus 491 -~~p~V~~a~V~g~~~-----~~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~ 564 (614)
T PRK08180 491 -GAPLVQDVVITGHDR-----DEIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVAR 564 (614)
T ss_pred -cCchhheEEEEcCCC-----CceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeE
Confidence 899999999999875 4577999887541 1345679999999998887 67 5
Q ss_pred eeecCCCCCCC------CchhhHHHHHHHHhhhhhh
Q 004952 689 FKVVPEFPRTA------SNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 689 ~~~v~~lP~t~------~GKvdR~~L~~~~~~~~~~ 718 (722)
+++++++|+|+ +||+.|+++.+.|++++++
T Consensus 565 ~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~ 600 (614)
T PRK08180 565 ALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEA 600 (614)
T ss_pred EEEecCCCCCccCccCccccccHHHHHHHhHHHHHH
Confidence 66889998765 4588899999999888775
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=536.21 Aligned_cols=489 Identities=19% Similarity=0.188 Sum_probs=386.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+.+ +.+||.||.++++++|++|++. +++|++|++++++++++++++|||+++|++++|++
T Consensus 7 a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~ 80 (511)
T PRK13391 7 AQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVN 80 (511)
T ss_pred HhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccc
Confidence 4689999999874331 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+.++.+++.++++++++++++++.... ..........+. ..+.+...... .....+.+.......
T Consensus 81 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~- 147 (511)
T PRK13391 81 SHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGEL------EGFVGYAEAVAGLPA- 147 (511)
T ss_pred cccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCCC------cccccHHHHhcCCCC-
Confidence 999999999999999999999987432 111122222221 12222111100 112223333321111
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEe--CChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHH
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~--th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (722)
......++.++++|||||||.||||++ +|.++.. ........+++.+++++++..|++|+.+....+.
T Consensus 148 -------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 220 (511)
T PRK13391 148 -------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVML 220 (511)
T ss_pred -------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence 011233567899999999999999996 4666432 2333445677889999999999999988877788
Q ss_pred HhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhc
Q 004952 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (722)
Q Consensus 418 ~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~ 495 (722)
++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++.+.+
T Consensus 221 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~ 299 (511)
T PRK13391 221 VIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW 299 (511)
T ss_pred HHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc
Confidence 999999999986 4678899999999999999999999998876432 2334678999999999999999988887755
Q ss_pred cCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCcccccccccc
Q 004952 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575 (722)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t 575 (722)
+..+++.||+||++.+............+++|+|+++ .++|+|++|++++.|+. |||++..... ..|+.+++.+
T Consensus 300 -g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~~~--~gy~~~~~~~ 373 (511)
T PRK13391 300 -GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGGRP--FEYLNDPAKT 373 (511)
T ss_pred -CCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCcc--eEEcCChhHh
Confidence 5789999999999865443322223445789999999 69999999999999985 9999944322 2234456666
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
+..|..+ .+||+|||+|++++||.++++||.||++|++|.+|++.|||++|. +||.|.+|+|+++++...| +.
T Consensus 374 ~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~~ 446 (511)
T PRK13391 374 AEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNEDLG-EE 446 (511)
T ss_pred HHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcccC-ce
Confidence 6665433 249999999999999999999999999999999999999999995 8999999999999988877 78
Q ss_pred EEEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 656 LVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 656 l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+++++++.++... ..++++++++++||.|+.|. +..++++|+|+|||++|+.|++.+..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 447 VKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 9999988764332 24789999999999999995 55899999999999999999998764
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-61 Score=551.00 Aligned_cols=499 Identities=14% Similarity=0.101 Sum_probs=361.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh---h-cCCC-----------CEEEEEcCCCHHHHHHH
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVIIY 250 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~---~-v~~g-----------d~V~l~~~~s~~~vv~~ 250 (722)
++++||++|+++... +..++.+||+||.++++++|++|.+ . +++| |+|+|+++|+++|++++
T Consensus 71 ~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~ 147 (746)
T PTZ00342 71 YKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVAD 147 (746)
T ss_pred HhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHH
Confidence 478999999986421 1224589999999999999999996 6 9998 99999999999999999
Q ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCC-------
Q 004952 251 LAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV------- 321 (722)
Q Consensus 251 lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 321 (722)
+||+++|++.||+++.++.+++.++|+++++++|+++.... +.+..+....+. .++++.......
T Consensus 148 lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 221 (746)
T PTZ00342 148 LACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININKE 221 (746)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCcccccccccc
Confidence 99999999999999999999999999999999999976432 222222223332 233332211000
Q ss_pred ----------CCCC-------------------------------------------CCCCCCHHHHhcccCCCCCCCCC
Q 004952 322 ----------GIPL-------------------------------------------REQDLSWKDFLSSVDYHPRPNYY 348 (722)
Q Consensus 322 ----------~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 348 (722)
.... ......|+++.+... ...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~ 296 (746)
T PTZ00342 222 EKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TNY 296 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cCC
Confidence 0000 000011222211110 111
Q ss_pred CCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhc--CCCCCCEEEEecCccccchhHHHHHHhhcCCEEE
Q 004952 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426 (722)
Q Consensus 349 ~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv 426 (722)
+.....++|+|+|+|||||||.||||++||+|+++.+....... ...+.+++++++|++|.++....+.+++.|++++
T Consensus 297 ~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~ 376 (746)
T PTZ00342 297 KIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTIN 376 (746)
T ss_pred CCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEE
Confidence 22344679999999999999999999999999988776543321 2335689999999999999877788899999999
Q ss_pred EecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhc--------CCCCC-------------------------------
Q 004952 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG------------------------------- 467 (722)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~~~~------------------------------- 467 (722)
+.+. ++..+++.|+++++|+++++|.++..|.+. .....
T Consensus 377 ~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k 454 (746)
T PTZ00342 377 IWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK 454 (746)
T ss_pred EeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 9864 678899999999999999999999988652 10000
Q ss_pred ---CCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccC-CCceEEEEC-CC
Q 004952 468 ---LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD-EC 542 (722)
Q Consensus 468 ---~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld-~~ 542 (722)
.-.++||.+++||+++++++.+++...+ +++++++||+||+++..+.... .....+++|+|+ |+++++|+| ++
T Consensus 455 ir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d~~~ 532 (746)
T PTZ00342 455 IKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRTWET 532 (746)
T ss_pred HHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEecccc
Confidence 0026899999999999999999987755 6899999999999765444333 234568999998 999999998 44
Q ss_pred CCcCCCCCCccceEEE-ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeec-Cce
Q 004952 543 GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGI 620 (722)
Q Consensus 543 ~~~~p~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~-~G~ 620 (722)
+...+.+. .|||++ +|..+. .|+.+++.|++.|..+ +||+|||+|++|+||+|+|+||+||+||+ +|+
T Consensus 533 ~~~~~~~~--~GEl~vrGp~v~~--GY~~~pe~T~~~f~~d------GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge 602 (746)
T PTZ00342 533 YKATDTLP--KGELLIKSDSIFS--GYFLEKEQTKNAFTED------GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGE 602 (746)
T ss_pred cccCCCCC--ceEEEEecCcccc--cccCChhhhhhhcCcC------CcccCCcEEEECCCCeEEEEccCCCeEEeCCCE
Confidence 44444443 389998 333222 1333677898888643 29999999999999999999999999996 799
Q ss_pred eechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCC----------------CC-CCH-----------HH
Q 004952 621 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG----------------FT-SQP-----------DK 672 (722)
Q Consensus 621 ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~----------------~~-~~~-----------~~ 672 (722)
+|+|.|||++|. .||.|.+|+|++... . ..++|.|+++.. .. .+. .+
T Consensus 603 ~I~p~eIE~~l~-~~p~V~~~~VvG~~~---~-~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 677 (746)
T PTZ00342 603 YIETDMLNNLYS-QISFINFCVVYGDDS---M-DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNI 677 (746)
T ss_pred EEchHHHHHHHh-cCCCccEEEEEccCC---c-cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHH
Confidence 999999999995 999999999998532 1 468999988641 00 010 12
Q ss_pred HHHHHHHH---------HHhhcCC-Ceeec-CCC----CCCCCchhhHHHHHHHHhhhhh
Q 004952 673 LKMIFSKA---------IQSKLNP-LFKVV-PEF----PRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 673 l~~~l~~~---------l~~~~~p-~~~~v-~~l----P~t~~GKvdR~~L~~~~~~~~~ 717 (722)
+++++.+. |+.+-.. .+..+ +.| -+||+-|+.|+.+.+.++..++
T Consensus 678 ~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 678 YVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred HHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence 33433333 3333233 22211 222 2899999999999998885554
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=530.12 Aligned_cols=438 Identities=16% Similarity=0.183 Sum_probs=363.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+++.+. .+||+||.++++++|..|.+. +++||+|++++++++++++++|||+++|++++|++
T Consensus 13 a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~ 84 (458)
T PRK09029 13 AQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLN 84 (458)
T ss_pred HHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecC
Confidence 368899999997666 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|..+.+++..+++++++++++++++... +. .+ . ...+. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~----~--------------------~~~~~-----~~~--- 125 (458)
T PRK09029 85 PQLPQPLLEELLPSLTLDFALVLEGENT----FS---AL----T--------------------SLHLQ-----LVE--- 125 (458)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcccc----hh---hc----c--------------------ccccc-----ccc---
Confidence 9999999999999999999999864310 00 00 0 00000 000
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
........++++++++|||||||.||||+++|++++..+......+++.++++++...|+.|.+++..++.+|..|++
T Consensus 126 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~ 203 (458)
T PRK09029 126 --GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGAT 203 (458)
T ss_pred --ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCce
Confidence 011123457899999999999999999999999999988877778899999999999999999998777788999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+. ..+++.+ .++|.+.++|+++..|...... ..+||.+++||+++++.+.+++... +.++++.|
T Consensus 204 v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 204 LVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred EEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 998764 4566666 4899999999999999876432 3579999999999999988887654 68899999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccccccce
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f 579 (722)
|+||++...+.... ....++|+|++++.++|+| |||++ ..||++. ++.+..
T Consensus 272 G~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~~------~~~~~~-- 327 (458)
T PRK09029 272 GLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWRQ------GQLVPL-- 327 (458)
T ss_pred cccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeecC------cccccc--
Confidence 99999864433221 2234699999999999986 56665 4566653 223321
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
..+.+||+|||+|+++ ||+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|++.+++..+ +.++++
T Consensus 328 -----~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~ 399 (458)
T PRK09029 328 -----VNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAV 399 (458)
T ss_pred -----ccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEE
Confidence 1134599999999999 9999999999999999999999999999995 9999999999999998877 899999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
|+.+. ..+.++|+++++++||.|+.| .++.++++|+|++||++|+.|++++.+...+
T Consensus 400 v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~~ 457 (458)
T PRK09029 400 VESDS--EAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLGN 457 (458)
T ss_pred EEcCc--ccCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccCC
Confidence 98774 356789999999999999999 5668999999999999999999999887654
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=558.67 Aligned_cols=506 Identities=17% Similarity=0.154 Sum_probs=367.9
Q ss_pred CCCCCCceEEEEe-----------cCC----CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHH
Q 004952 186 RRKEDNTVAIVWR-----------EDR----CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249 (722)
Q Consensus 186 a~~~pd~~Al~~~-----------~~~----~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~ 249 (722)
++++||++|+.+. ++. ...+.+..+||+||.++++++|++|.+. +++||+|+|+++|+++|+++
T Consensus 68 ~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~ 147 (696)
T PLN02387 68 CKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIA 147 (696)
T ss_pred HHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 4789999999542 110 0124456799999999999999999999 99999999999999999999
Q ss_pred HHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCC----
Q 004952 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGI---- 323 (722)
Q Consensus 250 ~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---- 323 (722)
+|||+++|+++||+++.++.+++.++|++++++++|++.... +.+..+....+. .++.+.........
T Consensus 148 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 221 (696)
T PLN02387 148 LQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLSG 221 (696)
T ss_pred HHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCCchhhhhhhc
Confidence 999999999999999999999999999999999999986432 222222222222 22333221110000
Q ss_pred CCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhc-CCCCCCEEEE
Q 004952 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCW 402 (722)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~ 402 (722)
.......+|+++....... ..+.....++|+++|+|||||||.||||++||+|++..+......+ ++.++|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (696)
T PLN02387 222 SSNWTVSSFSEVEKLGKEN----PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLA 297 (696)
T ss_pred cCCcEEEEHHHHHHhhccC----CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEE
Confidence 0011123566665443220 1112234679999999999999999999999999988877655443 5889999999
Q ss_pred ecCccccchhHHHHHHhhcCCEEEEecCCC-------ChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC---------
Q 004952 403 PTNLGWVMGPVILFSSFLNGATLALYQGSP-------LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--------- 466 (722)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~-------~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--------- 466 (722)
+.|++|.++....+..+..|+++....... .+..+...++++++|++.++|.++..+.+.....
T Consensus 298 ~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~ 377 (696)
T PLN02387 298 YLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAK 377 (696)
T ss_pred ECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999866566677888876643211 1234567899999999999999999886421000
Q ss_pred ----------------------C--C-------------Cc-cceeEEEeecCCCCcchHHHHHhhccCCcccccccccc
Q 004952 467 ----------------------G--L-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (722)
Q Consensus 467 ----------------------~--~-------------~l-~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (722)
. . .+ ++||.+++||+++++++.+++...+ +++++++||+||
T Consensus 378 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TE 456 (696)
T PLN02387 378 KLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTE 456 (696)
T ss_pred HHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhh
Confidence 0 0 01 5899999999999999987776554 689999999999
Q ss_pred cccccccCCcCCcCccccccccCCCceEEEEC-CCCCcC---CCCCCccceEEE-----ecccCCCccccccccccccce
Q 004952 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY---PDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (722)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~---p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f 579 (722)
+++..+.... .....+++|+|+++++++|+| +++... .++. .|||+| ..||++ +++.|++.|
T Consensus 457 t~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p--~GEi~vrGp~v~~GY~~------~pe~T~~~f 527 (696)
T PLN02387 457 TCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMP--RGEIVIGGPSVTLGYFK------NQEKTDEVY 527 (696)
T ss_pred cccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCC--CceEEeccCcccchhcC------CHHHHhhhh
Confidence 9865544333 233467899999999999998 544322 1222 388988 345554 677888888
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
..++ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+++|++.+.. ..++|
T Consensus 528 ~~d~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~V~g~~~~----~~~~a 600 (696)
T PLN02387 528 KVDE--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIMVHADPFH----SYCVA 600 (696)
T ss_pred cccc--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEEEEecCCc----ceEEE
Confidence 5432 35579999999999999999999999999998 599999999999995 9999999999986532 57899
Q ss_pred EEEecCCC----------C-CC------HHHHHHHHHH---------HHHhhcCCCee-ecCC-C-----CCCCCchhhH
Q 004952 659 FVVLKKGF----------T-SQ------PDKLKMIFSK---------AIQSKLNPLFK-VVPE-F-----PRTASNKLLR 705 (722)
Q Consensus 659 ~vv~~~~~----------~-~~------~~~l~~~l~~---------~l~~~~~p~~~-~v~~-l-----P~t~~GKvdR 705 (722)
+|++.+.. . .+ ..++++.+.+ +|+.+..|+.+ .+++ + -+||+.|+.|
T Consensus 601 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R 680 (696)
T PLN02387 601 LVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKR 680 (696)
T ss_pred EEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhh
Confidence 99986421 0 01 1122222222 35556666433 4433 2 2788899999
Q ss_pred HHHHHHHhhhhhh
Q 004952 706 RVLRDQIKHELSV 718 (722)
Q Consensus 706 ~~L~~~~~~~~~~ 718 (722)
+.+.+.|++++++
T Consensus 681 ~~i~~~y~~~i~~ 693 (696)
T PLN02387 681 EQIRKKFKDDLKK 693 (696)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=519.28 Aligned_cols=405 Identities=14% Similarity=0.127 Sum_probs=347.2
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 004952 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (722)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l 272 (722)
+|++.++ ++||+||+++++++|+.|. . +++|++|+++++|++++++++|||+++|++++|++|..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 3566666 9999999999999999985 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCcc
Q 004952 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (722)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (722)
..++++++++.+++++... . . . . ...
T Consensus 72 ~~~~~~~~~~~~i~~~~~~------~---------------~------------------~----~-----------~~~ 97 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF------T---------------K------------------L----E-----------AVN 97 (414)
T ss_pred HHHHHhCCCCEEEecCccc------c---------------c------------------c----c-----------CCC
Confidence 9999999999999875210 0 0 0 0 001
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecCC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~ 431 (722)
..+++++|++|||||||.||||+++|+++.+.+......+++..+|+++...|+.|++++ ..++.+|..|+++++.+ .
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~ 176 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-N 176 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-C
Confidence 245789999999999999999999999999888877788888999999999999999987 56889999999999986 4
Q ss_pred CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccccccccc
Q 004952 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511 (722)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 511 (722)
.++..+++.++++++|++.++|+++..|.+.... ..+++.+++||++++++..+.+++. ..+++|.||+||+++
T Consensus 177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~ 250 (414)
T PRK08308 177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGC 250 (414)
T ss_pred CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCC
Confidence 6788899999999999999999999999875422 1478899999999999988888765 468999999999986
Q ss_pred ccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceec
Q 004952 512 AYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (722)
Q Consensus 512 ~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~y 591 (722)
+..... ....+++|+|++++++++.++. |++ ||+++..+ .+||
T Consensus 251 ~~~~~~---~~~~~~~G~p~~~~~~~~~~~~------~~~--gel~v~~~--------------------------~~~~ 293 (414)
T PRK08308 251 VSICPD---MKSHLDLGNPLPHVSVSAGSDE------NAP--EEIVVKMG--------------------------DKEI 293 (414)
T ss_pred eeecCC---CCCCCccCccCCCeEEEEecCC------CCC--ceEEEEcC--------------------------CceE
Confidence 433221 1244679999999999997642 443 89987421 2389
Q ss_pred ccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHH
Q 004952 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (722)
Q Consensus 592 rTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (722)
+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .+|+|.+|+|++.+++..+ +.++++++... ..+.+
T Consensus 294 ~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~--~~~~~ 369 (414)
T PRK08308 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE--EIDPV 369 (414)
T ss_pred ECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC--CCCHH
Confidence 99999999999999999999999999999999999999995 9999999999999988777 88999988764 46678
Q ss_pred HHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHH
Q 004952 672 KLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLR 709 (722)
Q Consensus 672 ~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~ 709 (722)
+++++++++|+.|++|. ++++++||+|++||++|++|+
T Consensus 370 ~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 370 QLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 99999999999999995 558999999999999999543
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=557.66 Aligned_cols=500 Identities=17% Similarity=0.168 Sum_probs=359.4
Q ss_pred cCCCCCCceEEEEecC-----------CCC--------CCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004952 185 HRRKEDNTVAIVWRED-----------RCD--------ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~ 244 (722)
+++++||++|+.+... ++. .+..+.+||+||+++++++|++|++. +++||+|+|+++|++
T Consensus 78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 157 (700)
T PTZ00216 78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW 157 (700)
T ss_pred HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 4478999999998521 010 12457999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc--CCC-cEEEEcCCCCCC
Q 004952 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--APL-KAIVLPAIGNDV 321 (722)
Q Consensus 245 ~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 321 (722)
+|++++|||+++|++++|+++.++++++.+++++++++++|++.... +.+...... .+. .++.+......
T Consensus 158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~- 230 (700)
T PTZ00216 158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGMPNTTIIYLDSLPAS- 230 (700)
T ss_pred HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccCCceEEEEECCCccc-
Confidence 99999999999999999999999999999999999999999986422 111111111 111 22333211100
Q ss_pred CCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhc----C-CCC
Q 004952 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----D-LKV 396 (722)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~----~-~~~ 396 (722)
.........+|+++....... ...........++|++||+|||||||.||||++||+|+++.+.+....+ + +.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 309 (700)
T PTZ00216 231 VDTEGCRLVAWTDVVAKGHSA-GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE 309 (700)
T ss_pred cccCCceEEEHHHHHHhCCcc-ccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC
Confidence 000112345677776544210 0111112334689999999999999999999999999988876654433 2 478
Q ss_pred CCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHH-------HHHHhCCcEEechhHHHHHHHhcCCC----
Q 004952 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSLVKAWRNTNCL---- 465 (722)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~-------~i~~~~vt~l~~~P~~l~~l~~~~~~---- 465 (722)
+|+++++.|++|.++.......++.|+++++.+ +..+.+ .++++++|++.++|.+++.+.+....
T Consensus 310 ~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~ 385 (700)
T PTZ00216 310 DETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP 385 (700)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence 899999999999888755555677888776632 333333 68899999999999999887542100
Q ss_pred ---------------------CCCC----------------ccceeEEEeecCCCCcchHHHHHhhccCCcccccccccc
Q 004952 466 ---------------------EGLD----------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (722)
Q Consensus 466 ---------------------~~~~----------------l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (722)
...+ .++||.+++||+++++++.++++..+ + +++|+||+||
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TE 463 (700)
T PTZ00216 386 VGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTE 463 (700)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCccc
Confidence 0000 15899999999999999988776654 4 8999999999
Q ss_pred cccccccCCcCCcCccccccccCCCceEEEECCCCC--cCCCCCCccceEEE-----ecccCCCccccccccccccceec
Q 004952 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV--PYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG 581 (722)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~--~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~ 581 (722)
+++..+.... .....+++|+|++|++++|+|+++. ..+++. .|||+| +.||++ +++.|++.|..
T Consensus 464 t~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~--~GEL~vrG~~v~~GY~~------~pe~T~~~f~~ 534 (700)
T PTZ00216 464 TVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP--RGEILLRGPFLFKGYYK------QEELTREVLDE 534 (700)
T ss_pred ccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCC--CceEEEcCCcccchhcC------ChhHhhhhccc
Confidence 9865443322 2345689999999999999997642 334444 489998 345554 67788888865
Q ss_pred cccCCCceecccCceEEEecCCcEEEEeecCCeee-cCceeechHHHHHHHhccCCCccee--EEEeecCCCCCceEEEE
Q 004952 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILET--AAISVSPAGGGPEVLVI 658 (722)
Q Consensus 582 ~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~l~~~~p~V~~~--~vv~~~~~~~g~~~l~a 658 (722)
++ ||+|||+|++|+||+|+|+||+||+|| .+|++|+|+|||++|. +||.|.++ +|++.++ . ..++|
T Consensus 535 dG------w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~~~~~---~-~~l~a 603 (700)
T PTZ00216 535 DG------WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVLVHPA---R-SYICA 603 (700)
T ss_pred cC------CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEEEecC---C-ceEEE
Confidence 42 999999999999999999999999999 8999999999999995 99999973 4444332 2 67999
Q ss_pred EEEecCCC----------C------CCHHHHHHHHHHHHH---------hhcCCC-eeec------CCCCCCCCchhhHH
Q 004952 659 FVVLKKGF----------T------SQPDKLKMIFSKAIQ---------SKLNPL-FKVV------PEFPRTASNKLLRR 706 (722)
Q Consensus 659 ~vv~~~~~----------~------~~~~~l~~~l~~~l~---------~~~~p~-~~~v------~~lP~t~~GKvdR~ 706 (722)
+|++.... . .+..++++.+.+.+. .+-.++ +.++ +.=-+|+++|+.|+
T Consensus 604 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~ 683 (700)
T PTZ00216 604 LVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRR 683 (700)
T ss_pred EEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchH
Confidence 99875310 0 011233444444332 222232 2222 33347999999999
Q ss_pred HHHHHHhhhhhh
Q 004952 707 VLRDQIKHELSV 718 (722)
Q Consensus 707 ~L~~~~~~~~~~ 718 (722)
++.+.|++.+++
T Consensus 684 ~i~~~y~~~i~~ 695 (700)
T PTZ00216 684 VIDERYADLIKE 695 (700)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=532.19 Aligned_cols=475 Identities=20% Similarity=0.144 Sum_probs=376.8
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEec
Q 004952 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (722)
Q Consensus 209 ~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 287 (722)
.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCC
Q 004952 288 DFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365 (722)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS 365 (722)
+... +......+... ...+.+... . ......+++....... ......++.++++|||
T Consensus 91 ~~~~------~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TS 149 (502)
T PRK08276 91 AALA------DTAAELAAELPAGVPLLLVVAG-P------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSS 149 (502)
T ss_pred cchh------hHHHHHhhhccccccEEEEeCC-C------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECC
Confidence 7532 11222222221 122222111 0 0122334444332111 1122446789999999
Q ss_pred CCCCCCceEEeCChHHHHHH------HHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHH
Q 004952 366 GTTGEPKAIPWTQLSSIRCT------AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439 (722)
Q Consensus 366 GSTG~PKgV~~th~~~~~~~------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~ 439 (722)
||||.||||+++|.++.... ......+....++++++..++.|..++...+.++..|+++++.+ ..++..+++
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 228 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALA 228 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHH
Confidence 99999999999988754321 22222233357789999999999988876778999999998876 467889999
Q ss_pred HHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCC
Q 004952 440 FVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517 (722)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (722)
.++++++|++.++|+++..+++.... ...+++++|.+++||++++.++.+++.+.+ +.++++.||+||++.++....
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC
Confidence 99999999999999999999876432 345688999999999999999999888765 567999999999987444333
Q ss_pred cCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceE
Q 004952 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597 (722)
Q Consensus 518 ~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~ 597 (722)
.......+++|+|+ ++.++|+|+++++++.|+. ||+++..+... ..++.+++.+...|..+ +||+|||+|
T Consensus 308 ~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~-~gy~~~~~~~~~~~~~~------~~~~TGD~~ 377 (502)
T PRK08276 308 EDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYP-FEYHNDPEKTAAARNPH------GWVTVGDVG 377 (502)
T ss_pred ccccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCcc-chhcCCHHHHHHHhcCC------CceeecceE
Confidence 22233457899999 8899999999999999985 99999532221 12333555666666542 399999999
Q ss_pred EEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHH
Q 004952 598 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLK 674 (722)
Q Consensus 598 ~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~ 674 (722)
++++||.+++.||+||++|++|.+|++.|||.+|. +||+|.+++|++..++..+ +.++++|+++++...+. ++++
T Consensus 378 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~ 455 (502)
T PRK08276 378 YLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAGDALAAELI 455 (502)
T ss_pred EEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECCCCCCChhhHHHHH
Confidence 99999999999999999999999999999999996 8999999999999988777 89999999987543332 4789
Q ss_pred HHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 675 MIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 675 ~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
++++++|+.++.|. ++.+++||+|+|||++|++|++.+.....+
T Consensus 456 ~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 500 (502)
T PRK08276 456 AWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGRQR 500 (502)
T ss_pred HHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhhhh
Confidence 99999999999994 558999999999999999999998776544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=582.86 Aligned_cols=485 Identities=18% Similarity=0.173 Sum_probs=378.5
Q ss_pred CCC-CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKE-DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~-pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++ |+++|+.+.+. +++||+||+++++++|++|++.+++||+|+++++|++++++++|||+++|++++|+||
T Consensus 642 ~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 714 (1140)
T PRK06814 642 KIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINF 714 (1140)
T ss_pred HHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCC
Confidence 455 46788875332 2899999999999999999633999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
.++.+++.+++++++++++++++......+. ....+..+ ...+.++.... ....++.+......
T Consensus 715 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~-- 780 (1140)
T PRK06814 715 SAGIANILSACKAAQVKTVLTSRAFIEKARL----GPLIEALEFGIRIIYLEDVRA--------QIGLADKIKGLLAG-- 780 (1140)
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHhhhcc----hhHHHHhccCceEEEehHhhc--------cCChHHHHHHHhhc--
Confidence 9999999999999999999998754321111 11111111 12222221100 00111111110000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G 422 (722)
.....+.....++|++|++|||||||.||||+++|+++.+.+......++++++|++++..|+.|..+. ..++.++.+|
T Consensus 781 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 781 RFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred cCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 000011113467999999999999999999999999999888888888899999999999999999998 7788999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+ +++++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEe
Confidence 99999875556667889999999999999999999987753 345678999999999999999988887765 678999
Q ss_pred cccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
.||+||++..+..... .....+++|+|++++++++.+..+ .|+. |||++. .||++. ++ ..
T Consensus 938 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~~--Gel~v~g~~~~~gY~~~------~~--~~ 1002 (1140)
T PRK06814 938 GYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDEG--GRLFVRGPNVMLGYLRA------EN--PG 1002 (1140)
T ss_pred ccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCCc--eEEEEeCCCcchhhcCC------CC--CC
Confidence 9999999875543322 224467899999999999987543 2453 999983 344432 11 11
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.+.. .+++||+|||+|++|+||+++++||.||+||++|+||+|.|||++|. +||.|.+++|++++++..| ++++
T Consensus 1003 ~~~~----~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~ 1076 (1140)
T PRK06814 1003 VLEP----PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ERII 1076 (1140)
T ss_pred cccc----CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ceEE
Confidence 1111 13449999999999999999999999999999999999999999995 9999999999999998887 7888
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
+++.. .+.+.++++++++++ ++.+++|. ++.+++||+|+|||+||++|+++..+....+
T Consensus 1077 ~~~~~---~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 1137 (1140)
T PRK06814 1077 LLTTA---SDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAKP 1137 (1140)
T ss_pred EEEcC---CCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhccc
Confidence 77652 245668999999975 99999994 5589999999999999999999988876654
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=540.27 Aligned_cols=501 Identities=18% Similarity=0.182 Sum_probs=364.3
Q ss_pred CCCCCCceEEEEec-CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++++|+++|+.+.. ..+..+.+..+||+||.++++++|+.|.+. +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 52 ~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl 131 (660)
T PLN02430 52 VEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPL 131 (660)
T ss_pred HHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 36899999997642 111123345689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCC---CCCCCCCCCHHHHhcc
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG---IPLREQDLSWKDFLSS 338 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 338 (722)
++.++++++.+++++++++++|+++.... ..+.......+. .++.+........ ........+|++++..
T Consensus 132 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02430 132 YDTLGPGAVDYIVDHAEIDFVFVQDKKIK-----ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHM 206 (660)
T ss_pred ccCCCHHHHHHHHhccCCCEEEECHHHHH-----HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHh
Confidence 99999999999999999999999864210 011111111111 1222221110000 0001123467776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh-----cCCCCCCEEEEecCccccchhH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-----IDLKVGDVYCWPTNLGWVMGPV 413 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~-----~~~~~~d~~l~~~~~~~~~~~~ 413 (722)
.... . .......++|+++|+|||||||.||||++||++++..+...... .+++++|+++++.|++|.++..
T Consensus 207 ~~~~--~--~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~ 282 (660)
T PLN02430 207 GKEN--P--SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRM 282 (660)
T ss_pred hccC--C--CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHH
Confidence 3321 1 11123457999999999999999999999999998876654321 2567899999999999998876
Q ss_pred HHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC-----------------------------
Q 004952 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----------------------------- 464 (722)
Q Consensus 414 ~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----------------------------- 464 (722)
..+.++..|++++++.. ++..+++.|+++++|++.++|.+++.+.+...
T Consensus 283 ~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (660)
T PLN02430 283 IEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360 (660)
T ss_pred HHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 55667899999988754 55789999999999999999999987764200
Q ss_pred --CCCC---C----------c-cceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCcccccc
Q 004952 465 --LEGL---D----------W-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528 (722)
Q Consensus 465 --~~~~---~----------l-~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG 528 (722)
.... + + ++||.+++||+++++++.++++ .++++++++.||+||+++..+..........+++|
T Consensus 361 ~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG 439 (660)
T PLN02430 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG 439 (660)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCcc
Confidence 0000 0 1 5899999999999999866654 44456899999999998655444333333468999
Q ss_pred ccCCCceEEEEC--CCC-CcCCCCCCccceEEE-e----cccCCCccccccccccccceeccccCCCceecccCceEEEe
Q 004952 529 TATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600 (722)
Q Consensus 529 ~p~~~~~~~vld--~~~-~~~p~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~ 600 (722)
+|.+++++++.| +.| .+++.|. .|||+| + .||++ +++.|++.|. + | ||+|||+|++|
T Consensus 440 ~p~~~~evki~d~~~~g~~~~~~~~--~GEi~vrg~~v~~GY~~------~~e~t~~~~~-d----G--w~~TGDig~~d 504 (660)
T PLN02430 440 APAVYNELRLEEVPEMGYDPLGEPP--RGEICVRGKCLFSGYYK------NPELTEEVMK-D----G--WFHTGDIGEIL 504 (660)
T ss_pred CCCCceEEEEEEcCCcCcccCCCCC--cceEEecCCCccccccC------ChHHhhhhhh-c----c--ceeccceEEEC
Confidence 999999999986 333 4455544 499999 3 35554 6667777773 1 2 99999999999
Q ss_pred cCCcEEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC----------CC-
Q 004952 601 VGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS- 668 (722)
Q Consensus 601 ~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~----------~~- 668 (722)
+||+|+|+||+||+||+ +|++|+|.+||++| .+||.|.+|+|++.. .+ +.++|+|++++.. ..
T Consensus 505 ~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l-~~~p~V~~~~V~G~~---~~-~~~~A~vv~~~~~~~~~~~~~~~~~~ 579 (660)
T PLN02430 505 PNGVLKIIDRKKNLIKLSQGEYVALEYLENVY-GQNPIVEDIWVYGDS---FK-SMLVAVVVPNEENTNKWAKDNGFTGS 579 (660)
T ss_pred CCCcEEEEEcccccEEcCCCcEEchHHHHHHH-hcCCCeeEEEEEecC---Cc-ceEEEEEEcCHHHHHHHHHhCCCCCC
Confidence 99999999999999997 69999999999999 599999999999832 23 7899999986421 00
Q ss_pred -----CHHHHHHHHHHH---------HHhhcCCC-eeecC-C-----CCCCCCchhhHHHHHHHHhhhhhh
Q 004952 669 -----QPDKLKMIFSKA---------IQSKLNPL-FKVVP-E-----FPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 669 -----~~~~l~~~l~~~---------l~~~~~p~-~~~v~-~-----lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+..++++.+.+. |+.+-.++ +..++ . =.+|+++|+.|+.+.+.|+.++++
T Consensus 580 ~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 650 (660)
T PLN02430 580 FEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE 650 (660)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence 112344444332 44444442 22222 2 358999999999999999888764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-59 Score=530.36 Aligned_cols=477 Identities=18% Similarity=0.176 Sum_probs=366.4
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+++|+.++ +..+. +..+.+||+||+.+++++|.+|++. +++||+|+++++|++++++++|||+++|++++|+++
T Consensus 32 ~~~~~~~~-~~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~ 106 (579)
T PRK09192 32 LGEAGMNF-YDRRG----QLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPL 106 (579)
T ss_pred ccCCceEE-EecCC----CEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccC
Confidence 45665544 33222 2235899999999999999999999 999999999999999999999999999999999987
Q ss_pred CCC-------HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 266 SFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 266 ~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
..+ .+++.+++++++++++|+++... +.......... ... ...+.++...
T Consensus 107 ~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~------~~~~~~~~~~~-~~~----------------~~~~~~~~~~ 163 (579)
T PRK09192 107 PMGFGGRESYIAQLRGMLASAQPAAIITPDELL------PWVNEATHGNP-LLH----------------VLSHAWFKAL 163 (579)
T ss_pred CcccccchHHHHHHHHHHHhcCCCEEEeChHHH------HHHHHhhcccc-ccc----------------eeehhhhccc
Confidence 543 68999999999999999987532 11111111110 000 1122222221
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh-hcCCCCCCEEEEecCccccchhHH-HH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LF 416 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~ 416 (722)
... ........+++++|++|||||||.||||+++|+++...+..... .+++.++|+++...|+.|++++.. ++
T Consensus 164 ~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 238 (579)
T PRK09192 164 PEA-----DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLL 238 (579)
T ss_pred CCC-----ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHH
Confidence 111 11112345689999999999999999999999999888877766 788999999999999999999864 56
Q ss_pred HHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcC---CCCCCCccceeEEEeecCCCCcchHHH
Q 004952 417 SSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN---CLEGLDWTKIRSFASTGETSNVDDDLW 490 (722)
Q Consensus 417 ~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~---~~~~~~l~~Lr~i~~~Ge~l~~~~~~~ 490 (722)
.++..|+++++.+.. .++..+++.+.++++|++..+|.++..+.... .....+++++|.+++||+++++.+.+.
T Consensus 239 ~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 318 (579)
T PRK09192 239 TPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQ 318 (579)
T ss_pred HHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHH
Confidence 778999999776521 25678899999999998887666665554322 123356889999999999999999888
Q ss_pred HHhhcc-----CCcccccccccccccccccCCcCCc---------------------------CccccccccCCCceEEE
Q 004952 491 LSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLVI 538 (722)
Q Consensus 491 ~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~~v 538 (722)
+.+.+. ...+++.||+||++..++....... ....++|+|+++++++|
T Consensus 319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i 398 (579)
T PRK09192 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI 398 (579)
T ss_pred HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEE
Confidence 776543 1358999999999865443221100 11247899999999999
Q ss_pred ECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCC
Q 004952 539 LDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613 (722)
Q Consensus 539 ld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd 613 (722)
+|+++++++.|+. |||++. .||++ + ..+.+.|.. ..||+|||+|++ +||+++|+||+||
T Consensus 399 ~d~~~~~~~~g~~--Gel~i~g~~~~~gY~~------~-~~~~~~~~~------dgw~~TGDlg~~-~~G~l~~~GR~dd 462 (579)
T PRK09192 399 RNEAGMPLPERVV--GHICVRGPSLMSGYFR------D-EESQDVLAA------DGWLDTGDLGYL-LDGYLYITGRAKD 462 (579)
T ss_pred ECCCCCCCCCCCE--EEEEecCCchhhhhcC------C-ccccccccC------CceeeccceeeE-ECCEEEEEecccc
Confidence 9999999999984 999983 34444 3 444445443 239999999999 9999999999999
Q ss_pred eeecCceeechHHHHHHHhccCCCcc--eeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHH-hhcCCC-e
Q 004952 614 TMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-SKLNPL-F 689 (722)
Q Consensus 614 ~ik~~G~ri~~~eIE~~l~~~~p~V~--~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~-~~~~p~-~ 689 (722)
+||++|+||+|.|||++|. .||+|. +|+|++++++. + +.++++++..++...+.++|++++++.++ .++.|. +
T Consensus 463 ~i~~~G~~v~p~eIE~~l~-~~p~V~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i 539 (579)
T PRK09192 463 LIIINGRNIWPQDIEWIAE-QEPELRSGDAAAFSIAQEN-G-EKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAV 539 (579)
T ss_pred EEEECCCccCHHHHHHHHH-hcCCccCCcEEEEEeccCC-C-eeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceE
Confidence 9999999999999999995 999998 89999998874 4 58889988876555566889999999985 577774 4
Q ss_pred eec--CCCCCCCCchhhHHHHHHHHhhh
Q 004952 690 KVV--PEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 690 ~~v--~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
.++ ++||+|++||++|++|++++..-
T Consensus 540 ~~~~~~~lP~t~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 540 ELVPPHSLPRTSSGKLSRAKAKKRYLSG 567 (579)
T ss_pred EEeCCCCcCCCCCcchhHHHHHHHHHcC
Confidence 455 58999999999999999987653
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=551.48 Aligned_cols=543 Identities=20% Similarity=0.205 Sum_probs=421.6
Q ss_pred hHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC----CCccCCC--cccc
Q 004952 21 EEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYWFPS--LDQS 93 (722)
Q Consensus 21 ~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~ 93 (722)
.+..+|.+.++++.+. ..+++||++||++ +++.+.+.+... .++ |+++|++++..... ....... ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~-l~~~~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (642)
T COG1020 75 SGRVTFAELLARLRELALGALEHQDLPGEQ-LVERLGRERSLS-EPL--FDVVFVLQNGPTAGLKLPGLRVEELGIETPA 150 (642)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHhhhccCC-CCc--eeeEEEecCcccccccccccccccccccCcc
Confidence 3334556655555555 7777999999999 999999887777 666 78888887643322 1111111 1345
Q ss_pred ccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCCCcCCC
Q 004952 94 KLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTWLPG 170 (722)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~w~~~ 170 (722)
.++|+.+...+. ++...+ |.. ++|+..+++++..+|..++..+...+......+ +...++ ..|+ .
T Consensus 151 ~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~----~~~~-~ 218 (642)
T COG1020 151 AKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSER----EVWN-A 218 (642)
T ss_pred cccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH----hhcc-c
Confidence 677777776555 555566 888 999999999999999999999887777444332 333322 3366 3
Q ss_pred Cccchh-hhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH
Q 004952 171 SVLNIA-ECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA 246 (722)
Q Consensus 171 ~~~~~~-~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~ 246 (722)
...... ..+++. ..+++++|+++|+++.+. ++||+||+.+++++|+.|.+. ++++++|++++++++++
T Consensus 219 ~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~ 290 (642)
T COG1020 219 LAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVAILADRSLEL 290 (642)
T ss_pred cccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHH
Confidence 322222 122322 346789999999998866 999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCC
Q 004952 247 VIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326 (722)
Q Consensus 247 vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (722)
+++++|++|+|++|+|+||.+|.+|+.+++++++++.+++...........+.
T Consensus 291 i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 343 (642)
T COG1020 291 VVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--------------------------- 343 (642)
T ss_pred HHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc---------------------------
Confidence 99999999999999999999999999999999999999998532210000000
Q ss_pred CCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCc
Q 004952 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNL 406 (722)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 406 (722)
+..+........ .........+++++|++|||||||+||||+++|+++++.+.+....+.++..|+++..+++
T Consensus 344 ---~~~~~~~~~~~~----~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~ 416 (642)
T COG1020 344 ---LALDDALSEIPD----TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASL 416 (642)
T ss_pred ---cccccccccCCc----cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCc
Confidence 000000000000 0000223456899999999999999999999999999988888888999999999999999
Q ss_pred cccchhHHHHHHhhcCCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCC
Q 004952 407 GWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGET 482 (722)
Q Consensus 407 ~~~~~~~~~~~~L~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~ 482 (722)
+||.+.+++|.++++|+++++.+.. .++..+.+.+.++++|++..+|+++..+...... .....+.+|.+++|||.
T Consensus 417 ~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~ 496 (642)
T COG1020 417 SFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEA 496 (642)
T ss_pred ccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCC
Confidence 9999999999999999999998753 3778899999999999999999999999876221 12223459999999999
Q ss_pred CCcchHHHHHhhcc-CCcccccccccccccccccCCcCCcCc-cccccccCCCceEEEECCCCCcCCCCCCccceEEE--
Q 004952 483 SNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-- 558 (722)
Q Consensus 483 l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-- 558 (722)
++..+...+....+ ...+.|.||+||+++.+.......... ..++|+|++|+.++|+|+.++++|.|+. ||+++
T Consensus 497 l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~--gel~i~g 574 (642)
T COG1020 497 LPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP--GELYIAG 574 (642)
T ss_pred CCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC--eeeEECC
Confidence 99999887766544 467999999999776544433322111 5799999999999999999999999997 88887
Q ss_pred ---ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccC
Q 004952 559 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (722)
Q Consensus 559 ---~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~ 635 (722)
+.||++ +++.|+++|..+ |+|+|||++|+++||.++|+||.|+|||++|+||+++|||..+. .+
T Consensus 575 ~~~a~gy~~------~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~-~~ 641 (642)
T COG1020 575 LGLALGYLN------RPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALA-EQ 641 (642)
T ss_pred cchhhhhcC------ChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHh-cC
Confidence 455555 667999999876 49999999999999999999999999999999999999999994 66
Q ss_pred C
Q 004952 636 E 636 (722)
Q Consensus 636 p 636 (722)
|
T Consensus 642 ~ 642 (642)
T COG1020 642 P 642 (642)
T ss_pred C
Confidence 5
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-59 Score=536.19 Aligned_cols=490 Identities=17% Similarity=0.139 Sum_probs=362.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. ..+.++.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 59 a~~~pd~~a~~~~~~--~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 136 (624)
T PRK12582 59 AAEAPDRPWLAQREP--GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVS 136 (624)
T ss_pred HHHCCCchheecccC--CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeecc
Confidence 478999999987542 113346899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCH-----HHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 265 DSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 265 p~~~~-----~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|.++. +++.+++++++++++|+++.... ...... ........+++..... ......+.++....
T Consensus 137 p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~-~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 205 (624)
T PRK12582 137 PAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPF----ARALAA-LDLLDVTVVHVTGPGE------GIASIAFADLAATP 205 (624)
T ss_pred CccccccCCHHHHHHHHHhcCCcEEEecCHHHH----HHHHHh-hhhcCceEEEEcCCCc------ccccccHHHHhhcC
Confidence 99985 89999999999999999863110 000011 1111122233221100 01223455554432
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCC---CCEEEEecCccccchh-HHH
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGP-VIL 415 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~---~d~~l~~~~~~~~~~~-~~~ 415 (722)
.. ...........++++++|+|||||||.||||+++|++++..+......+.... .++++.+.|++|.++. ..+
T Consensus 206 ~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 283 (624)
T PRK12582 206 PT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283 (624)
T ss_pred Cc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHH
Confidence 11 00001112345789999999999999999999999999887765544444444 5799999999999987 456
Q ss_pred HHHhhcCCEEEEecCCCChh---hHHHHHHHhCCcEEechhHHHHHHHhcCCCC----CCCccceeEEEeecCCCCcchH
Q 004952 416 FSSFLNGATLALYQGSPLER---SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE----GLDWTKIRSFASTGETSNVDDD 488 (722)
Q Consensus 416 ~~~L~~G~~lv~~~~~~~~~---~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~----~~~l~~Lr~i~~~Ge~l~~~~~ 488 (722)
+.+|..|+++++.+...++. .+++.++++++|++.++|++++.|.+..... ..++++||.+++||+++++++.
T Consensus 284 ~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~ 363 (624)
T PRK12582 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLY 363 (624)
T ss_pred HHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHH
Confidence 77899999999976444433 4567788999999999999999887642211 2346899999999999999998
Q ss_pred HHHHhhc----c-CCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----
Q 004952 489 LWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL----- 558 (722)
Q Consensus 489 ~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v----- 558 (722)
+++.+.+ + +++++|.||+||++.++..... .....+++|+|++|++++|+ |.|+. |||+|
T Consensus 364 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~-------~~G~~--GEl~vrg~~v 433 (624)
T PRK12582 364 ERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLA-------PVGDK--YEVRVKGPNV 433 (624)
T ss_pred HHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCCcCCCCcEEEEc-------cCCCc--eEEEEECCcc
Confidence 8887652 1 3579999999999865442222 23456789999999999985 45764 99998
Q ss_pred ecccCCCccccccccccccceeccccCCCceecccCceEEE-e---cCCcEEEEeecCCeeec-CceeechHHHH--HHH
Q 004952 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR-T---VGGYIIVQGRADDTMNL-GGIKTSSVEIE--RVC 631 (722)
Q Consensus 559 ~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~-~---~dG~l~~~GR~dd~ik~-~G~ri~~~eIE--~~l 631 (722)
..||++ +++.|++.|.. ++||+|||+|++ | +||+|+|+||+||+||+ +|++|+|.+|| .++
T Consensus 434 ~~GY~~------~p~~t~~~f~~------dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l 501 (624)
T PRK12582 434 TPGYHK------DPELTAAAFDE------EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA 501 (624)
T ss_pred cccccC------CccchhhhcCc------cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHH
Confidence 244554 56677777753 239999999998 4 56999999999999996 69999999885 566
Q ss_pred hccCCCcceeEEEeecCCCCCceEEEEEEEecC----------CC----CCCHHHHHHHHHHHHHhhc--------CC-C
Q 004952 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKK----------GF----TSQPDKLKMIFSKAIQSKL--------NP-L 688 (722)
Q Consensus 632 ~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~----------~~----~~~~~~l~~~l~~~l~~~~--------~p-~ 688 (722)
.+||.|.+|+|++.+++.. .+.|++.. +. ..+.++++++++++|..+. .| +
T Consensus 502 -~~~p~V~~a~VvG~~~~~~-----g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 575 (624)
T PRK12582 502 -ACSPVIHDAVVAGQDRAFI-----GLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIAR 575 (624)
T ss_pred -hcCcchheEEEEcCCCCcE-----EEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEE
Confidence 4899999999999876543 34443321 11 1234678888888888876 77 5
Q ss_pred eeecCCCC------CCCCchhhHHHHHHHHhhhhhh
Q 004952 689 FKVVPEFP------RTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 689 ~~~v~~lP------~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+.+++++| +|++||+.|++..+.|++++++
T Consensus 576 ~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ 611 (624)
T PRK12582 576 ALLMTEPPSIDAGEITDKGYINQRAVLERRAALVER 611 (624)
T ss_pred EEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHH
Confidence 66777776 5677888899999999988875
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=508.90 Aligned_cols=428 Identities=22% Similarity=0.257 Sum_probs=350.8
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccc
Q 004952 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (722)
Q Consensus 211 TY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (722)
||+||.++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999874
Q ss_pred hhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCC
Q 004952 290 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369 (722)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG 369 (722)
... +.+ ....+.++...... ..........+++++++|||||||
T Consensus 81 ~~~--~~~------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG 124 (436)
T TIGR01923 81 LEE--KDF------------------------------QADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTG 124 (436)
T ss_pred ccc--cce------------------------------eecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCC
Confidence 310 000 00011111111100 001122345689999999999999
Q ss_pred CCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEE
Q 004952 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 449 (722)
Q Consensus 370 ~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l 449 (722)
.||+|+++|+++...+.+....++++++|++++..|+.|..++..++.++..|+++++.+.. ..+++.|+++++|++
T Consensus 125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~ 201 (436)
T TIGR01923 125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI 201 (436)
T ss_pred CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence 99999999999998888888889999999999999999998888889999999999998642 388999999999999
Q ss_pred echhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccc
Q 004952 450 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (722)
Q Consensus 450 ~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (722)
.++|++++.|.+.... .+++|.+++|||++++++.+++... +++++|.||+||++..++...........++|+
T Consensus 202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 275 (436)
T TIGR01923 202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR 275 (436)
T ss_pred EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence 9999999999886432 2789999999999999988877653 788999999999987554443322222234899
Q ss_pred cCCCceEEE-ECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCC
Q 004952 530 ATMTAGLVI-LDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 603 (722)
Q Consensus 530 p~~~~~~~v-ld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG 603 (722)
|+++++++| .|+.+ + .||+++. .||++ +++.+...+ +.+||+|||+|++++||
T Consensus 276 ~~~~~~~~i~~~~~~------~--~Gel~v~~~~~~~gy~~------~~~~~~~~~-------~~~~~~TGD~~~~~~dg 334 (436)
T TIGR01923 276 PLAGREIKIKVDNKE------G--HGEIMVKGANLMKGYLY------QGELTPAFE-------QQGWFNTGDIGELDGEG 334 (436)
T ss_pred cCCCcEEEEEeCCCC------C--ceEEEEECCccchhhCC------Chhhhhhhh-------cCCCeeccceEEEcCCC
Confidence 999999999 44332 3 4999983 34443 223333222 22499999999999999
Q ss_pred cEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh
Q 004952 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683 (722)
Q Consensus 604 ~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~ 683 (722)
.+++.||.||+||++|.+|++.|||.+|. .+|.|.+++|++.++...+ ..++++++++++ .+..++.+++++.|+.
T Consensus 335 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~--~~~~~l~~~l~~~l~~ 410 (436)
T TIGR01923 335 FLYVLGRRDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSESD--ISQAKLIAYLTEKLAK 410 (436)
T ss_pred CEEEeccccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECCC--CCHHHHHHHHHHhhhC
Confidence 99999999999999999999999999995 8999999999998877666 788999988753 5678999999999999
Q ss_pred hcCCC-eeecCCCCCCCCchhhHHHH
Q 004952 684 KLNPL-FKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 684 ~~~p~-~~~v~~lP~t~~GKvdR~~L 708 (722)
+++|. ++.+++||+|++||++|++|
T Consensus 411 ~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 411 YKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCCeEEEEecCCCCCCCCceecccC
Confidence 99995 55899999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-58 Score=522.69 Aligned_cols=485 Identities=18% Similarity=0.195 Sum_probs=353.5
Q ss_pred CCCCCceEEEEecCCCC-CCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~-~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
..+|+++|+++.+..++ .+..+++||+||.++++++|++|.+.-++||+|+++++|++++++++|||+++|++++|+++
T Consensus 12 ~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~ 91 (578)
T PRK05850 12 SLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSV 91 (578)
T ss_pred hcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCC
Confidence 68899999997542110 11235899999999999999999988337999999999999999999999999999999997
Q ss_pred ---CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcC---CC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 266 ---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL-KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 266 ---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
..+.+++.+++++++++++++++.... ......... .. .++.+.. . ++..
T Consensus 92 ~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~- 148 (578)
T PRK05850 92 PQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL-------------L---DLDS- 148 (578)
T ss_pred CCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc-------------c---cccc-
Confidence 457899999999999999999875421 111111100 00 0111100 0 0000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh-cC-----CCCCCEEEEecCccccchh
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~-~~-----~~~~d~~l~~~~~~~~~~~ 412 (722)
.. ........+++++|++|||||||.||||+++|+++.+.+...... +. ...++++++..|+.|+.++
T Consensus 149 -~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 222 (578)
T PRK05850 149 -PR-----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGL 222 (578)
T ss_pred -CC-----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchh
Confidence 00 001123456899999999999999999999999998776554332 22 3568899999999999997
Q ss_pred -HHHHHHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHH-HHHHHhcC---CCCCCCccceeEEEeecCCCC
Q 004952 413 -VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL-VKAWRNTN---CLEGLDWTKIRSFASTGETSN 484 (722)
Q Consensus 413 -~~~~~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~-l~~l~~~~---~~~~~~l~~Lr~i~~~Ge~l~ 484 (722)
..++.+++.|+++++.+.. .++..++++++++++++.. +|++ +..+.... .....+++++|.+++||++++
T Consensus 223 ~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~ 301 (578)
T PRK05850 223 VLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSA-APNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVH 301 (578)
T ss_pred HHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEe-CCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCC
Confidence 5688999999999998642 2678899999999998664 5554 44443321 112346789999999999999
Q ss_pred cchHHHHHhhcc-----CCcccccccccccccccccCCcCCc------------------------CccccccccCCCce
Q 004952 485 VDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP------------------------QAFGAFSTATMTAG 535 (722)
Q Consensus 485 ~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~p~~~~~ 535 (722)
+.+.+++.+.++ +..+++.||+||++..+.......+ ....++|.|. +.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~ 380 (578)
T PRK05850 302 PATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPT 380 (578)
T ss_pred HHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCE
Confidence 999888877652 3468999999998754333211100 0112345554 578
Q ss_pred EEEECC-CCCcCCCCCCccceEEEe-----cccCCCccccccccccccceec---ccc--CCCceecccCceEEEecCCc
Q 004952 536 LVILDE-CGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRG---MPM--YKGMCLRRHGDIIKRTVGGY 604 (722)
Q Consensus 536 ~~vld~-~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~---~p~--~~g~r~yrTGDl~~~~~dG~ 604 (722)
++|+|+ +++++|.|+. |||++. .||++ +++.|++.|.. +|. ....+||+|||+|+++ ||+
T Consensus 381 ~~ivd~~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~ 451 (578)
T PRK05850 381 VRIVDPDTCIECPAGTV--GEIWVHGDNVAAGYWQ------KPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGE 451 (578)
T ss_pred EEEEcCCCCcCCCCCCE--EEEEEecCcccccccC------ChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCE
Confidence 999994 5889999985 999993 35554 66677777753 121 1123599999999997 999
Q ss_pred EEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH------HHHHHHHH
Q 004952 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP------DKLKMIFS 678 (722)
Q Consensus 605 l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~------~~l~~~l~ 678 (722)
++|+||+||+||++|++|+|.|||++|. .||.+ +++|++++++ .+ +.++++|+++++...+. .++++.+.
T Consensus 452 l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~ 527 (578)
T PRK05850 452 LFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EKLVAIIELKKRGDSDEEAMDRLRTVKREVT 527 (578)
T ss_pred EEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eEEEEEEEeccccCcchhhhhhHHHHHHHHH
Confidence 9999999999999999999999999995 89985 5788888876 55 88999999887543332 24555555
Q ss_pred HHHHh--hcCCC-eeec--CCCCCCCCchhhHHHHHHHHhhh
Q 004952 679 KAIQS--KLNPL-FKVV--PEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 679 ~~l~~--~~~p~-~~~v--~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+.++. ++.|. ++++ ++||+|++|||+|++|++.+.+.
T Consensus 528 ~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 528 SAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred HHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 55544 23453 4444 58999999999999999987653
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=502.80 Aligned_cols=472 Identities=18% Similarity=0.153 Sum_probs=358.2
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
...|+.+|+...+. .+.+||.||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+++
T Consensus 13 ~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~ 86 (545)
T PRK07768 13 RTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQ 86 (545)
T ss_pred hCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCC
Confidence 56799998865443 24899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 266 SFAAREI-------ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 266 ~~~~~~l-------~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
..+.+++ ..+++.++++.+++++......+ .+ ... ....+.++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~-~~~------------------~~~~~~~~~l~~~ 141 (545)
T PRK07768 87 PTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAP------VL-EEK------------------GIRVLTVADLLAA 141 (545)
T ss_pred CCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhh------hh-ccc------------------CCceeehhhhccc
Confidence 9887655 44677789999999874321110 00 000 0112334444432
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCC-CEEEEecCccccchhHH-HH
Q 004952 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-LF 416 (722)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~-~~ 416 (722)
... ......++++++++|||||||.||||+++|+++...+......+++.++ |++++..|+.|+.+... ++
T Consensus 142 ~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 214 (545)
T PRK07768 142 DPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT 214 (545)
T ss_pred CCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence 111 1223457999999999999999999999999998888877777888876 89999999999999854 56
Q ss_pred HHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcC----CCCCCCccceeEEEeecCCCCcchHH
Q 004952 417 SSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDDL 489 (722)
Q Consensus 417 ~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~~~~~l~~Lr~i~~~Ge~l~~~~~~ 489 (722)
.++..|+++++.+.. .++..+.++++++++|++..+|.++..+.... .....++++||.++++|+++++...+
T Consensus 215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~ 294 (545)
T PRK07768 215 VPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVE 294 (545)
T ss_pred HHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHH
Confidence 789999999988642 25667889999999999988888877665421 11246688999999999999999988
Q ss_pred HHHhh---cc--CCcccccccccccccccccCCcCC-------------------------cCccccccccCCCceEEEE
Q 004952 490 WLSSK---AW--YNAIIESCGGTELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVIL 539 (722)
Q Consensus 490 ~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~~~~~vl 539 (722)
++.+. ++ ...+++.||+||++..++...... .....++|+|++++.++|+
T Consensus 295 ~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~ 374 (545)
T PRK07768 295 DLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV 374 (545)
T ss_pred HHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEE
Confidence 87653 21 235999999999986543322110 1123579999999999999
Q ss_pred CCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCe
Q 004952 540 DECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614 (722)
Q Consensus 540 d~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ 614 (722)
|+++++++.|+. |||++. +||++ ...+...+ . +..||+|||+|++++||.++++||+||+
T Consensus 375 ~~~~~~~~~g~~--Gel~v~~~~~~~gy~~-------~~~~~~~~----~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~ 439 (545)
T PRK07768 375 DEDGQVLPPRGV--GVIELRGESVTPGYLT-------MDGFIPAQ----D--ADGWLDTGDLGYLTEEGEVVVCGRVKDV 439 (545)
T ss_pred CCCCCCCCCCCE--EEEEEccCcccccccC-------CCCCcccc----c--CCCeeeccceEEEecCCEEEEEccccce
Confidence 999999999985 999983 34443 22111111 1 2349999999999999999999999999
Q ss_pred eecCceeechHHHHHHHhccCCCcceeEEEeec--CCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhh--cCCC-
Q 004952 615 MNLGGIKTSSVEIERVCDQADESILETAAISVS--PAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSK--LNPL- 688 (722)
Q Consensus 615 ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~--~~~~g~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~--~~p~- 688 (722)
||++|.+|++.|||++|. .||+|.+++|+++. +...+ +.++.++....... ....++.+++++.++.+ ..|.
T Consensus 440 i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~ 517 (545)
T PRK07768 440 IIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRN 517 (545)
T ss_pred EEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 999999999999999995 89999998877664 33333 45555555443211 12245777888887766 4674
Q ss_pred eeecC--CCCCCCCchhhHHHHHHHHh
Q 004952 689 FKVVP--EFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 689 ~~~v~--~lP~t~~GKvdR~~L~~~~~ 713 (722)
+.+++ +||+|++||++|+.|+++|.
T Consensus 518 v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 518 VVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred EEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 33554 89999999999999999875
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=485.91 Aligned_cols=485 Identities=22% Similarity=0.213 Sum_probs=359.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++..+|+.+|+.+... +.++.+||+|+.+++.++|+.|++. ++.||+|+|++.|+++|+++.+||+.+|++.||+
T Consensus 25 ~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~ 100 (613)
T COG1022 25 RVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100 (613)
T ss_pred HhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEec
Confidence 3467888889987664 5778999999999999999999999 9779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc---EEEEc-CCCCC--CCCC----CCCCCCCHH
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK---AIVLP-AIGND--VGIP----LREQDLSWK 333 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~--~~~~----~~~~~~~~~ 333 (722)
+++.+++.++++|++++++++++++... .+....+...++.. ...+. ..... .... ...+...+
T Consensus 101 y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (613)
T COG1022 101 YSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF- 174 (613)
T ss_pred CCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence 9999999999999999999999997421 12222222211110 00000 00000 0000 00011111
Q ss_pred HHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC-CCCCCEEEEecCccccchh
Q 004952 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGP 412 (722)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~ 412 (722)
. ..... .........++|+|.|+|||||||.|||||+||+|+++.+......+. ++++|++++++|++|.+..
T Consensus 175 ~-~~~~~-----~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 175 L-IDSAG-----LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred h-hcccc-----cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 0 11111 111124567899999999999999999999999999999999999997 9999999999999999988
Q ss_pred HH-HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhc--------CC-------------------
Q 004952 413 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NC------------------- 464 (722)
Q Consensus 413 ~~-~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~------------------- 464 (722)
.. ....+..|+++... .++..+.+.+++.++|+++.+|.+++.+.+. ..
T Consensus 249 ~~~~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 249 AFEGGLALYGGVTVLFK---EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHhhcceEEEec---CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 54 44455555555443 4678999999999999999999999887432 00
Q ss_pred ----------------------CCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcC
Q 004952 465 ----------------------LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522 (722)
Q Consensus 465 ----------------------~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 522 (722)
.+... .++|.+++||.++++++..+++.. ++++.++||+|||+...+..++. ..
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~-~~ 401 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPD-RF 401 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcccc-Cc
Confidence 00111 389999999999999999999876 68999999999999866655443 35
Q ss_pred ccccccccCCCceEEEECCCCCcCCCCCCccceEEE-ecccCCCccccccccccccceeccccCCCceecccCceEEEec
Q 004952 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601 (722)
Q Consensus 523 ~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~ 601 (722)
..+++|.|+|+++++|.|+ |||+| +|..+.+ ||.+++.|++.|..|. ||+|||+|.+|+
T Consensus 402 ~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~G--Yyk~pe~Taeaf~~DG------Wf~TGDlg~~d~ 461 (613)
T COG1022 402 VLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKG--YYKNPEATAEAFTEDG------WFRTGDLGELDE 461 (613)
T ss_pred ccCCcCCcCCCceEEEccC------------ceEEEecchhcch--hcCChHHHhhhccccC------CcccCceeEEcC
Confidence 6789999999999999994 89998 3333331 3448889999998654 999999999999
Q ss_pred CCcEEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCC------------C
Q 004952 602 GGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT------------S 668 (722)
Q Consensus 602 dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~------------~ 668 (722)
+|+|.++||++|.||. +|.+|+|..||+.+ +.+|.|.+++|++ .+. ..+.|.|++..+.- .
T Consensus 462 ~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l-~~~~~I~qi~vvg-~~k----~~~~AlIvp~~~~l~~~a~~~~~~~~~ 535 (613)
T COG1022 462 DGYLVITGRKKELIKLSNGKNIAPEPIESKL-AKSPLIEQICVVG-DDK----KFLVALIVPDFDALEKWAESLNKVISA 535 (613)
T ss_pred CCcEEEeecccceEECCCCcccChHHHHHHH-hcCCCeeEEEEEe-cCC----cceEEEEeCCHHHHHHHHHhccccccC
Confidence 9999999999999996 79999999999999 5999999999998 332 57899999865210 0
Q ss_pred CH------HHHHHHHHHHHHh-----hcCC---Cee-ecCCCC-----CCCCchhhHHHHHHHHhhhhhh
Q 004952 669 QP------DKLKMIFSKAIQS-----KLNP---LFK-VVPEFP-----RTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 669 ~~------~~l~~~l~~~l~~-----~~~p---~~~-~v~~lP-----~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+. .++.+....++-. .+.. .+. ...++. .|++=|+.|+.+.+.+..+++.
T Consensus 536 ~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~ 605 (613)
T COG1022 536 SREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEA 605 (613)
T ss_pred CHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHH
Confidence 11 1122222221111 0001 122 222333 6899999999999988877654
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=454.28 Aligned_cols=506 Identities=16% Similarity=0.121 Sum_probs=375.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++..|+.+++-+.......+.++.+||.|..+++..+|..|+.. +++++.|||+.-|++||+++..||...|++.|||.
T Consensus 85 ~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplY 164 (691)
T KOG1256|consen 85 VEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLY 164 (691)
T ss_pred hhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecc
Confidence 36889999997765311246788999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhh--cCCCcEEEEcCCCCC-CCC----CCCCCCCCHHHHhc
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG--AAPLKAIVLPAIGND-VGI----PLREQDLSWKDFLS 337 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 337 (722)
...+++.+.++++++.+.+++++++- ....+..... ..+....++...+.. ... .......+|+++.+
T Consensus 165 dTlg~ea~~~Ii~~~e~~iv~vd~~~-----k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~ 239 (691)
T KOG1256|consen 165 DTLGAEAVHYIINHAEISIVFVDNAK-----KAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEE 239 (691)
T ss_pred cCCCHHHHHHHHHhcceeEEEEeCHH-----HHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHh
Confidence 99999999999999999999999642 1111111111 133332222222211 111 11223688999998
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHH---hhhh---cCCCCCCEEEEecCccccch
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAH---IDLKVGDVYCWPTNLGWVMG 411 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~---~~~~---~~~~~~d~~l~~~~~~~~~~ 411 (722)
.+... ....+ .+..|+|.|.|+|||||||.|||||+||+|++..+.. .... ......|++++++|++|.+-
T Consensus 240 lG~~~--~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~e 316 (691)
T KOG1256|consen 240 LGKKN--QRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFE 316 (691)
T ss_pred hcccc--cCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHH
Confidence 87541 11222 4678899999999999999999999999999885542 1111 12334699999999999999
Q ss_pred hHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhc-----------------------C---CC
Q 004952 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT-----------------------N---CL 465 (722)
Q Consensus 412 ~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~-----------------------~---~~ 465 (722)
...-...+..|+++.++.+ |+..+.+.|++.++|++.++|.+|..+.+. . ..
T Consensus 317 r~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~ 394 (691)
T KOG1256|consen 317 RVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLM 394 (691)
T ss_pred HHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhh
Confidence 8666666799999999975 556788889999999999999999877532 0 00
Q ss_pred CCCC-------------------ccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCcccc
Q 004952 466 EGLD-------------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526 (722)
Q Consensus 466 ~~~~-------------------l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 526 (722)
.... -.++|.+++|++++++++...++..+ +++++++||+|||++..+...+... ..++
T Consensus 395 ~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~lgs 472 (691)
T KOG1256|consen 395 KGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-VLGS 472 (691)
T ss_pred CCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-CCCC
Confidence 0000 03789999999999999999988765 6899999999999955554444443 7799
Q ss_pred ccccCCCceEEEEC-CCCCcCCCCCCccceEEE-ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCc
Q 004952 527 FSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (722)
Q Consensus 527 iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~ 604 (722)
+|.|+|+++++++| ++.+.-+.|.. ||||| ++..+.+ ||.+++.|++.|..+. |++|||+|+|+++|.
T Consensus 473 vG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~G--YyK~p~~T~e~ideDG------WLhTGDiG~~~p~G~ 542 (691)
T KOG1256|consen 473 VGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMG--YYKDPEKTAEAIDEDG------WLHTGDIGEWDPNGT 542 (691)
T ss_pred cCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhcee--ccCChHHHhhhhcccc------ccccccceeECCCcc
Confidence 99999999999988 45555555553 99999 4444432 3447889999997654 999999999999999
Q ss_pred EEEEeecCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCC--------C--HH--
Q 004952 605 IIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--------Q--PD-- 671 (722)
Q Consensus 605 l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~--------~--~~-- 671 (722)
|.+.||.++.+|. .|+.|.|..||++.. ..+-|.+.+|.+.... ..|+|.|+++..... . .+
T Consensus 543 l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s~~----~~LvaiVvpd~e~~~~~a~~~~~~~~~eel 617 (691)
T KOG1256|consen 543 LKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDSLR----SFLVAIVVPDPEVLKSWAAKDGVKGTFEEL 617 (691)
T ss_pred EEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCcch----hcEEEEEecChhhchhhHHHccCchhHHHH
Confidence 9999999999997 699999999999985 7788988888875432 679999999653211 0 01
Q ss_pred ----HHHHHH----HHHHHhhcCCCee-----ec-------CCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 672 ----KLKMIF----SKAIQSKLNPLFK-----VV-------PEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 672 ----~l~~~l----~~~l~~~~~p~~~-----~v-------~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
.+++.+ .+.....-...+. .+ +.==+||+-|+.|..|.+.|+.++++
T Consensus 618 c~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~ 684 (691)
T KOG1256|consen 618 CRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDE 684 (691)
T ss_pred hcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHH
Confidence 111111 1111111111111 22 22236899999999999999999875
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=429.97 Aligned_cols=494 Identities=22% Similarity=0.209 Sum_probs=390.4
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
||+++|+++|+++.+.. +++||+|++++++++|+.|..+ ++.||.||++|+|+++++...||.+|+|++...|
T Consensus 86 ~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~i 159 (649)
T KOG1179|consen 86 QVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFI 159 (649)
T ss_pred HHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeee
Confidence 56899999999998852 2999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC-CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+++...+-|.+.+.-++++.+|++.++.. ...++.+... ..+.++..... ...++..++...++.....
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~~~i~~~~~~~~----~~~~g~~~L~~~l~~~~~~ 229 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIKNGIHVFSLGPT----SVPDGIESLLAKLSAAPKH 229 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhhccceEEecCCC----CCCchHHHHHHhhcccccC
Confidence 99999999999999999999999986531 1111111111 11222221111 1122233333334333321
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhc
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~ 421 (722)
+.+ ..........++++.||||||||.||..+++|.-+..........++++++|+++...|+.|.++. ..+..++..
T Consensus 230 ~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~ 308 (649)
T KOG1179|consen 230 PVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLH 308 (649)
T ss_pred CCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhc
Confidence 111 122334556789999999999999999999999888777767778999999999999999998886 779999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+|+|+-. .++...+|+.+.+|+||++.-.--+.+.|++.+......-..+|..+- --+.++.++.+.++++..+|.
T Consensus 309 GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~G--NGLR~diW~~Fv~RFg~~~Ig 385 (649)
T KOG1179|consen 309 GATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYG--NGLRPDIWQQFVKRFGIIKIG 385 (649)
T ss_pred CceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEec--CCCCchHHHHHHHHcCCCeEE
Confidence 99999976 677889999999999999999999999999987765555567887764 447899999999999877899
Q ss_pred ccccccccccccccCCcCCcCcccccccc------CCCceEE---------EECCCC--CcCCCCCCccceEEE------
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLV---------ILDECG--VPYPDDQPCVGEVGL------ 558 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~---------vld~~~--~~~p~G~~giGel~v------ 558 (722)
+.||+||..+..+... ...+.+|+- +--+++. |-|++| .+|++|++ |.++-
T Consensus 386 E~YgaTEgn~~~~N~d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv~~i~~k~ 459 (649)
T KOG1179|consen 386 EFYGATEGNSNLVNYD----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLVGKIVQKN 459 (649)
T ss_pred EEeccccCcceeeeec----CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEEEEeccCC
Confidence 9999999876443321 122333331 1112222 233333 36788998 53331
Q ss_pred ----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhcc
Q 004952 559 ----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634 (722)
Q Consensus 559 ----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~ 634 (722)
..||.+ +...|+.....|-|.+|+-||.|||+-.+|+.|++||.+|.-|.+...|++|+..|+|.+| ..
T Consensus 460 P~~~F~GY~g------~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l-~~ 532 (649)
T KOG1179|consen 460 PLRSFLGYAG------PKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVL-SA 532 (649)
T ss_pred chhhhccccC------chhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHH-hh
Confidence 124444 3567888888888888999999999999999999999999999999999999999999999 58
Q ss_pred CCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCCee-ecCCCCCCCCchhhHHHHHHH
Q 004952 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK-VVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 635 ~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~~-~v~~lP~t~~GKvdR~~L~~~ 711 (722)
..++.|+.|.|+.-+...+..-.|.|+.+++.+.+.+.+-+.+++.||+|..|+|+ ++++|++|.+=|..+..|.+.
T Consensus 533 ~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 533 LDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred hccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 99999999999987665535667888888888899999999999999999999988 899999999999999999775
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=465.09 Aligned_cols=391 Identities=25% Similarity=0.279 Sum_probs=302.0
Q ss_pred cCCCCCCceEEEE-ecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVW-REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+|+++||++|+++ ... .+||+||+++++++|..|++. +++||+|+++++|++++++++|||+++|++++|
T Consensus 4 ~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~ 75 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP 75 (417)
T ss_dssp HHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred HHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccc
Confidence 4578999999999 555 999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCcccc--chHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcc
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP--LYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (722)
++|.++.+++.++++.++++++|+ .+.. +... .+........ ...+.+..... .....+...
T Consensus 76 l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 141 (417)
T PF00501_consen 76 LDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEPLKKLKSIFKQEDPSSSIIILDRDDL----------PKKEALKSA 141 (417)
T ss_dssp EETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHHHHHHHHHHTTSTTTEEEEEESHSSC----------TTCHHHHHH
T ss_pred cccccccccccccccccceeEEEE-eccc---cccccccchhhhccccccccccccccccc----------ccccccccc
Confidence 999999999999999999999997 1000 0111 1111112111 12233321111 000111110
Q ss_pred cCCCCCCCCCCCcc-CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh--hhcCCCCCCEEEEecCccccchh-HH
Q 004952 339 VDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-VI 414 (722)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (722)
... ...... ..++++++++|||||||.||+|.++|+++++.+.... ..++++ |+++++.|++|..++ ..
T Consensus 142 ~~~-----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~ 214 (417)
T PF00501_consen 142 SLS-----DEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISA 214 (417)
T ss_dssp HHC-----HCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHH
T ss_pred ccc-----cccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccc
Confidence 000 000000 0569999999999999999999999999988877653 223333 699999999999999 88
Q ss_pred HHHHhhcCCEEEEecCCCC--hhhHHHHHHHhCCcEEechhHHHHHHHhcCCC----CCCCccceeEEEeecCCCCcchH
Q 004952 415 LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDDD 488 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~--~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~----~~~~l~~Lr~i~~~Ge~l~~~~~ 488 (722)
++.++..|+++++++.... +..+++.|+++++|++.++|++++.|++.... ...++++||.+++||+++++++.
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~ 294 (417)
T PF00501_consen 215 LLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLL 294 (417)
T ss_dssp HHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHH
T ss_pred ccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhc
Confidence 9999999999999985432 46688999999999999999999999884322 23578899999999999999999
Q ss_pred HHHHhhccCCcccccccccccccccccCC-cCCcCccccccccCCCceEEEECCC-CCcCCCCCCccceEEEe-----cc
Q 004952 489 LWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLF-----PL 561 (722)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v~-----~~ 561 (722)
+++.+.++..++++.||+||++..++... .......+++|.|+++++++|+|++ ++++|.|+. |||++. .|
T Consensus 295 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~~~g 372 (417)
T PF00501_consen 295 RRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNVFSG 372 (417)
T ss_dssp HHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTSBSE
T ss_pred cccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCcccee
Confidence 99998876668999999999998765432 2222355789999999999999987 999999995 999994 34
Q ss_pred cCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecC
Q 004952 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (722)
Q Consensus 562 y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (722)
|++ +++.+++.|.. ++||+|||+|++|+||+|+++||.||+||+|
T Consensus 373 y~~------~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 373 YYN------DPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp ETT------BHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eec------ccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 443 45677777774 2399999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=428.35 Aligned_cols=488 Identities=18% Similarity=0.170 Sum_probs=367.9
Q ss_pred CccceecHHHHHHHHHHHHHHHHhh-cCCCCE-EEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCce
Q 004952 205 SAVNLMTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAK 282 (722)
Q Consensus 205 ~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~-V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~ 282 (722)
+....+||.|+.+++..+|+.|.+. ++++++ |+|+++.+.+|+++.+||++.+...|.+...+..+.|.+-|++++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 4567999999999999999999999 997766 99999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhcCCccccchHHHhhcCCCcEEEEcCCC--CCC---CCC----CCCCCCCHHHHhcccCCCCCCCCCCCccC
Q 004952 283 GIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG--NDV---GIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYN 353 (722)
Q Consensus 283 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (722)
.|+|+.... +.+...+..++....++-... ... ... .....++++++.+-+.... .++.+.
T Consensus 165 ~i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P 234 (678)
T KOG1180|consen 165 AIFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPP 234 (678)
T ss_pred EEEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCC
Confidence 999998543 333344444444333332221 111 011 1234577889888776522 233444
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhc-CCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP 432 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~ 432 (722)
.|+|+|+|||||||||.||||+++|.|+++.+....... .+++.|+++.+.|+.|.+-+..=+.++..|+++-..+...
T Consensus 235 ~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~T 314 (678)
T KOG1180|consen 235 KPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLT 314 (678)
T ss_pred CCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcce
Confidence 779999999999999999999999999999888776665 6899999999999999999855568899999987654322
Q ss_pred --Ch-h----hHHHHHHHhCCcEEechhHHHHHHHhcC--------------------------CCCCC-----------
Q 004952 433 --LE-R----SFGKFVQDAGVTVLGTVPSLVKAWRNTN--------------------------CLEGL----------- 468 (722)
Q Consensus 433 --~~-~----~l~~~i~~~~vt~l~~~P~~l~~l~~~~--------------------------~~~~~----------- 468 (722)
|. . .---.+...|+|++.++|+.+..+.+.- .....
T Consensus 315 Ltdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFk 394 (678)
T KOG1180|consen 315 LTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFK 394 (678)
T ss_pred ecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Confidence 11 1 1112456789999999999998765320 00000
Q ss_pred -----CccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CC
Q 004952 469 -----DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC 542 (722)
Q Consensus 469 -----~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~ 542 (722)
--.+||.+++||.+|+++..+++...+ .|++.++||.||++...+...+.+ ...+.+|.|++.++++++| ++
T Consensus 395 KIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~E 472 (678)
T KOG1180|consen 395 KIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEE 472 (678)
T ss_pred HHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhh
Confidence 013799999999999999998887665 469999999999987655544433 4457899999999999999 33
Q ss_pred CCcCCCCCCccceEEE-----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeec
Q 004952 543 GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (722)
Q Consensus 543 ~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~ 617 (722)
|.--+.+.|--|||++ .+||++ |++.|++.|.. .+|.|||+|||+|+|.+||.|.+++|++|.||.
T Consensus 473 gGY~~~~~PPrGEI~i~G~~vt~gY~k------n~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKl 543 (678)
T KOG1180|consen 473 GGYFAKNKPPRGEILIGGPNVTMGYYK------NEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKL 543 (678)
T ss_pred cCccCCCCCCCceEEecCCccChhhhC------Chhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhh
Confidence 3322222211377777 466665 78889999886 468999999999999999999999999999996
Q ss_pred -CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC--------CCCH---------HHHHHHHHH
Q 004952 618 -GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------TSQP---------DKLKMIFSK 679 (722)
Q Consensus 618 -~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~--------~~~~---------~~l~~~l~~ 679 (722)
+|+.|+++-+|+++ +..|-|...+|.+.... ..+|++||+.++. ..+. .++++.+.+
T Consensus 544 q~GEYIsL~KvEa~l-~s~p~V~NICvyAd~~~----s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k 618 (678)
T KOG1180|consen 544 QNGEYISLGKVEAAL-RSSPYVDNICVYADSNK----SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLK 618 (678)
T ss_pred cccceeehHHHHHHH-hcCcchhheEEeccccc----ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHH
Confidence 89999999999999 59999999888775432 5799999998642 1111 122222222
Q ss_pred H---------HHhhcCCCeeecCCCCCCC-Cc------hhhHHHHHHHHhhhhhh
Q 004952 680 A---------IQSKLNPLFKVVPEFPRTA-SN------KLLRRVLRDQIKHELSV 718 (722)
Q Consensus 680 ~---------l~~~~~p~~~~v~~lP~t~-~G------KvdR~~L~~~~~~~~~~ 718 (722)
. |...-+|.-+.+-..|-|| || |+.|+.+...+..++++
T Consensus 619 ~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~ 673 (678)
T KOG1180|consen 619 ELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDR 673 (678)
T ss_pred HHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHH
Confidence 2 3333355555666777776 34 99999999999998875
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=448.91 Aligned_cols=393 Identities=21% Similarity=0.204 Sum_probs=324.5
Q ss_pred cHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEecc
Q 004952 211 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (722)
Q Consensus 211 TY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (722)
||.||.+.++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999999 7 99999999999999999999999999999999999999999999999999999999987
Q ss_pred chhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCC
Q 004952 289 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368 (722)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGST 368 (722)
........ .......+.. .+......... .........++++++++||||||
T Consensus 81 ~~~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTt 132 (408)
T TIGR01733 81 ALASRLAG----------LVLPIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGST 132 (408)
T ss_pred chhhhccc----------cCCceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCC
Confidence 54321111 1111111110 00000000000 00111113568999999999999
Q ss_pred CCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCC--hhhHHHHHHHhCC
Q 004952 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV 446 (722)
Q Consensus 369 G~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~--~~~l~~~i~~~~v 446 (722)
|.||+|.++|+++.+.+......+.+.++|+++...|++|..+++.++.++..|+++++++.... +..+.+.++++++
T Consensus 133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
T TIGR01733 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV 212 (408)
T ss_pred CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence 99999999999999988888888899999999999999999999999999999999999876443 6788899999999
Q ss_pred cEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCc--CCcC--
Q 004952 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQPQ-- 522 (722)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~-- 522 (722)
|.+.++|++++.|.+... ..+++||.+++||++++++..+++.+.++++.+++.||+||++.++..... ....
T Consensus 213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 289 (408)
T TIGR01733 213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE 289 (408)
T ss_pred eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence 999999999999988754 457899999999999999999999988876899999999999876542211 1111
Q ss_pred ccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCC--CceecccCc
Q 004952 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGD 595 (722)
Q Consensus 523 ~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~--g~r~yrTGD 595 (722)
...++|+|++++.++|+|+++++++.|+. |||++. .||++ +++.+.+.|..+++.. |.+||+|||
T Consensus 290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~~~~~~~~~~~~~~~~TGD 361 (408)
T TIGR01733 290 SPVPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVARGYLN------RPELTAERFVPDPFAGGDGARLYRTGD 361 (408)
T ss_pred cccccCcccCCceEEEECCCCCCCCCCCc--eEEEecCccccccccC------ChhhhhcceeeCCCCCCCCceEEECCc
Confidence 26789999999999999999999999985 999983 45554 5667777887766543 445999999
Q ss_pred eEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEE
Q 004952 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (722)
Q Consensus 596 l~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~v 643 (722)
+|+++++|++++.||.||+||++|++|+|.|||++|. .||.|.+|+|
T Consensus 362 l~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v 408 (408)
T TIGR01733 362 LVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV 408 (408)
T ss_pred eEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence 9999999999999999999999999999999999995 9999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=404.63 Aligned_cols=316 Identities=18% Similarity=0.197 Sum_probs=262.8
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEe--cC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY--QG 430 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~--~~ 430 (722)
..+++++|++|||||||.||||+++|+++.+........+ ...++++...|+.|..++..++.+++.|++++++ ..
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 3468999999999999999999999999988777654443 3557888999999999998888999999999884 34
Q ss_pred CCChhhHHHHHHHhC--CcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccc
Q 004952 431 SPLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~--vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (722)
..++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++||++++++..+++.+. +++++|.||+||
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE 186 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSE 186 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCc
Confidence 557889999999998 5667778988887766533 23457899999999999999998887753 689999999999
Q ss_pred cccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccccccceeccc
Q 004952 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
++..+. ..|+|+++++++|.| |++++ .+||++.+. . ..|..
T Consensus 187 ~~~~~~-----------~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~~~~~------~--~~~~~-- 232 (358)
T PRK07824 187 TSGGCV-----------YDGVPLDGVRVRVED-------------GRIALGGPTLAKGYRNPVD------P--DPFAE-- 232 (358)
T ss_pred cCCCcC-----------cCceeCCCCEEEecC-------------CEEEEecCccccccCCCcc------c--ccccC--
Confidence 875321 258999999999843 45554 566665321 1 12221
Q ss_pred cCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEec
Q 004952 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~ 663 (722)
+| ||+|||+|++ .||.++++||.||+||++|++|+|.|||++|. .||+|.+|+|++.+++..| +.++++++.+
T Consensus 233 --~g--~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~ 305 (358)
T PRK07824 233 --PG--WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGD 305 (358)
T ss_pred --CC--ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeC
Confidence 12 9999999999 89999999999999999999999999999995 9999999999999998887 8999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 664 KGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 664 ~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
.+...+.+++++++++.|+.+++|. ++++++||+|++||+||++|++++.+
T Consensus 306 ~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 306 GGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred CCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 7666778899999999999999995 55899999999999999999998865
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=416.28 Aligned_cols=468 Identities=12% Similarity=0.052 Sum_probs=326.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+++|+..... .+.++.+||+|+.++++++|+.|++. +++||+|+|+++|+++|+++.+||+++|++.||++
T Consensus 437 a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly 513 (1452)
T PTZ00297 437 VTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513 (1452)
T ss_pred HHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCC
Confidence 468899999964311 12335899999999999999999999 99999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCC-CC-CC--CCCCCCCCHHHHhcccC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-DV-GI--PLREQDLSWKDFLSSVD 340 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~ 340 (722)
+ +.+++.+++++++++++|++.... +.+.......-..++++..... .. .. .......+|+++++.+.
T Consensus 514 ~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~ 585 (1452)
T PTZ00297 514 G--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR 585 (1452)
T ss_pred C--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCc
Confidence 5 467899999999999999986432 1111211111123344421100 00 00 00112456888887653
Q ss_pred CCCCCCCCCCccCCCCCeEEEEc---CCCCCCCCceEEeCChHHHHHHHHhhhhc---CCCCCCEEEEecCccccchhHH
Q 004952 341 YHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI 414 (722)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~---TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~ 414 (722)
.. . ........++|++.|+| ||||||.||||++||+|++..+....... ...++|+++.++|++|.++...
T Consensus 586 ~~--~-~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~ 662 (1452)
T PTZ00297 586 LC--P-VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF 662 (1452)
T ss_pred cc--C-ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHH
Confidence 21 1 11123346789999996 99999999999999999998887654422 4567899999999999998766
Q ss_pred HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcC----CC----------------------CCC
Q 004952 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CL----------------------EGL 468 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~----------------------~~~ 468 (722)
.+.+++.|+++.. .++..+++.|+++++|++.++|.++..+.+.. .. ...
T Consensus 663 ~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~ 738 (1452)
T PTZ00297 663 VLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRR 738 (1452)
T ss_pred HHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7788999999864 25688999999999999999999998765320 00 000
Q ss_pred Cc----------------cceeEEEeecC--CCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCcccccccc
Q 004952 469 DW----------------TKIRSFASTGE--TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 530 (722)
Q Consensus 469 ~l----------------~~Lr~i~~~Ge--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p 530 (722)
.. .++|.+++||. +++..+ .. +.+++.+||.||+.. ..... .....|+|
T Consensus 739 ~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l-----~~--~i~i~~g~glTE~~~---~~~~~---~~~~~G~P 805 (1452)
T PTZ00297 739 DSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL-----LE--HISVCYVPCLREVFF---LPSEG---VFCVDGTP 805 (1452)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH-----hC--CceEEEecceEEeee---ecCCC---CcccCCee
Confidence 00 46999999873 443322 22 467888999999532 22221 11234999
Q ss_pred CCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEee
Q 004952 531 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610 (722)
Q Consensus 531 ~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR 610 (722)
+|+++++|.|....--..+ .||+++. |.+ +++.|++.+ +.|++||+|.++||
T Consensus 806 lpgvEvKI~~~~E~~~~~~---~GEIlvr--~~k------dpe~T~e~~-----------------~gW~~dG~L~IidR 857 (1452)
T PTZ00297 806 APSLQVDLEPFDEPSDGAG---IGQLVLA--KKG------EPRRTLPIA-----------------AQWKRDRTLRLLGP 857 (1452)
T ss_pred cCceEEEEcccccccCCCC---CCeEEEE--ECC------ChHHHHHhh-----------------CcCccCCeEEEEec
Confidence 9999999987321101112 4999983 333 445555421 23458999999999
Q ss_pred cCCeeec-CceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC-----------C--------CCH
Q 004952 611 ADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-----------T--------SQP 670 (722)
Q Consensus 611 ~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~-----------~--------~~~ 670 (722)
++|.||. +|++|+|..||+.+ ..+|.|.+++|+|... ..++|.|+++... . .+.
T Consensus 858 kKdlikls~GEyVaP~~IE~~l-~~sp~I~qi~V~Gd~~-----k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~ 931 (1452)
T PTZ00297 858 PLGILLPVAYEYVIAAELERIF-SQSRYVNDIFLYADPS-----RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGW 931 (1452)
T ss_pred cccceECCCCcEEcHHHHHHHH-hcCCCccEEEEEecCC-----CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCH
Confidence 9999996 79999999999999 5999999999998543 4489999886310 0 122
Q ss_pred HHHHH----HHHHH---------HHhhcCCCee-ec-CCC-----CCCCCchhhHHHHHHHHhhhhhh
Q 004952 671 DKLKM----IFSKA---------IQSKLNPLFK-VV-PEF-----PRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 671 ~~l~~----~l~~~---------l~~~~~p~~~-~v-~~l-----P~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
.++.+ .+.+. +..+-+++++ .+ ++| -+||+.|+.|+.+.+.+++++++
T Consensus 932 ~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~ 999 (1452)
T PTZ00297 932 TELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIER 999 (1452)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence 23211 12222 1223444433 22 445 47999999999999999998875
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=360.30 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=225.9
Q ss_pred CCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCC--CCEEEEecCccccchh-HHHHHHhhcCCEEEEecCCC
Q 004952 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSP 432 (722)
Q Consensus 356 ~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~ 432 (722)
++.++++|||||||.||||+++|+++.+.+.+....++++. .+++++..|++|..+. +.++.++..|+++++.+ ..
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence 55789999999999999999999999988877767777644 4689999999998776 66888999999999876 35
Q ss_pred ChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccc
Q 004952 433 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512 (722)
Q Consensus 433 ~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (722)
++..+++.++. .|++.++|++++.|.+.. .++++++. ++||+++++++.+.+.+. +..++++.||+||++++
T Consensus 174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 56667776654 389999999999997652 34677886 688999999998888764 33469999999999864
Q ss_pred cccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecc
Q 004952 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 592 (722)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yr 592 (722)
.+... +...|+|+|+.++.+ | ++ . +. | | ..||+
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~------~----~~----g---------------------~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TL------S----SA----G---------------------L----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Cc------c----CC----C---------------------c----cceee
Confidence 33211 122456666655432 1 11 0 00 0 0 11689
Q ss_pred cCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCC--H
Q 004952 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ--P 670 (722)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~--~ 670 (722)
|||+++|+++|+++|+||+||+||++|++|+|.|||++|. +||+|.+|+|.. .+ ++++++|+++++...+ .
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~~~~~~~~~ 351 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAEDADEAELE 351 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECCCCChHHHH
Confidence 9999999999999999999999999999999999999995 999999998853 24 7899999988654333 4
Q ss_pred HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhh
Q 004952 671 DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLL 704 (722)
Q Consensus 671 ~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvd 704 (722)
++++++++++|+.|+.|. +.++++||+|++||++
T Consensus 352 ~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 352 IELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 688999999999999995 5589999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=359.57 Aligned_cols=490 Identities=16% Similarity=0.130 Sum_probs=328.6
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 004952 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (722)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~ 266 (722)
..|+..+..+-...-..+....+||++....++.+|+.|... .-.|+.|++++.++.++++..++++++|..++|+||+
T Consensus 48 ~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~ 127 (1032)
T KOG1178|consen 48 EAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPS 127 (1032)
T ss_pred hcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCC
Confidence 344444444332222234556899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CC----HHHHHHH---HHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 267 FA----AREIATR---LRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 267 ~~----~~~l~~~---l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
+| ++++..+ +......++ ..++........... ........-.+..+....
T Consensus 128 ~~~~e~~~~~~~ia~~~~s~~~~i~----------~~l~i~~~~~~~~~~------------~~sv~~~~~~f~~~~~~~ 185 (1032)
T KOG1178|consen 128 WPNSELAGYLMRIAHFLTSVELEIV----------RRLNIIDILLNSLFP------------KLSVETIADSFQMVLHNE 185 (1032)
T ss_pred CcccccchHHHhhhhhheeccceeh----------hhhhhHHHHhhcccc------------ccchhhccchhhhhhccC
Confidence 99 3322211 111111111 000111111100000 000000000111111111
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHH-H
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS-S 418 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~-~ 418 (722)
. ...-...-++..+++.||||+||.||||.-+|..+++...|....+..+..+++-......++-....... .
T Consensus 186 ~------~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~ 259 (1032)
T KOG1178|consen 186 D------TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGAL 259 (1032)
T ss_pred C------CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhH
Confidence 1 11112344577899999999999999999999999999999999999999898866667767777755444 4
Q ss_pred hhcCCEEEEecCCC--ChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC-------------CCCCccceeEEEeecCCC
Q 004952 419 FLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------------EGLDWTKIRSFASTGETS 483 (722)
Q Consensus 419 L~~G~~lv~~~~~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~-------------~~~~l~~Lr~i~~~Ge~l 483 (722)
|++|+.+..+.... .+..+.+++++++++..+.+|++.++++..... .....+.|+...++||+.
T Consensus 260 L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~ 339 (1032)
T KOG1178|consen 260 LFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPL 339 (1032)
T ss_pred hhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCcc
Confidence 55555555543322 367899999999999999999998887664322 111234799999999999
Q ss_pred CcchHHHHHhhccCCcccccccccccccccccCCcCC------cC--ccccccccC--CCceEEEECCCCCcCCCCCCcc
Q 004952 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQ--AFGAFSTAT--MTAGLVILDECGVPYPDDQPCV 553 (722)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~--~~~~iG~p~--~~~~~~vld~~~~~~p~G~~gi 553 (722)
...+...+...+...-...-|++|+.+.-........ .. ...+.+.-+ +.+.+.++...+.+.+.++
T Consensus 340 ~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v--- 416 (1032)
T KOG1178|consen 340 LVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGV--- 416 (1032)
T ss_pred chhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcc---
Confidence 8887664444332222334488887765433211110 00 000100001 1234555556666666665
Q ss_pred ceEEEecccCCCccccccccccccceecccc-C--CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHH
Q 004952 554 GEVGLFPLYLGASDRLLNADHEEVYFRGMPM-Y--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630 (722)
Q Consensus 554 Gel~v~~~y~~~~~~~~~~~~t~~~f~~~p~-~--~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~ 630 (722)
|..|++.++....-.. ....+.+.|.++.. . .-+|+|||||+||..++|.+.+.||.|+|||+||+||+++||+.+
T Consensus 417 ~~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~ 495 (1032)
T KOG1178|consen 417 GKGCLGAEQNLSSWVV-DGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTV 495 (1032)
T ss_pred cceeecccccccceee-ccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchh
Confidence 4555544433211000 01122223332221 1 236799999999999999999999999999999999999999999
Q ss_pred HhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCC-CHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHH
Q 004952 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-QPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 631 l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~-~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L 708 (722)
+. .||.|.++.+..+.+...+ +.+++||+...+... ...+|+.++.+.|+.||+| .++.++++|+|+|||||+++|
T Consensus 496 v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL 573 (1032)
T KOG1178|consen 496 VE-VHPDVKEAITLARENSTVG-QTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKAL 573 (1032)
T ss_pred hc-cCcchhhhheeeeeccccC-ceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhh
Confidence 95 8899999999999998877 999999998875432 2467999999999999999 677999999999999999999
Q ss_pred HHH
Q 004952 709 RDQ 711 (722)
Q Consensus 709 ~~~ 711 (722)
.+.
T Consensus 574 ~~~ 576 (1032)
T KOG1178|consen 574 LEY 576 (1032)
T ss_pred hhh
Confidence 983
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=329.54 Aligned_cols=322 Identities=19% Similarity=0.169 Sum_probs=232.3
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH---HhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEe
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~ 428 (722)
.+++++++++|||||||.||+|.++|+++..... .....+++.++|+++...++++..+. ...+.++..|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 3557889999999999999999999999865433 22344688999999887666654433 3356678899999877
Q ss_pred cCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCC--CccceeEEEeecCCCCcchHHHHHhhccCCcccccccc
Q 004952 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (722)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (722)
+. .++..+++.|+++++|++.++|+++..|++....... ...+||.+++|||+++++..+++.+.+ +++++|.||+
T Consensus 152 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~ 229 (422)
T TIGR02155 152 SG-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGL 229 (422)
T ss_pred CC-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccc
Confidence 64 3467899999999999999999999998765322222 235899999999999999888887766 5899999999
Q ss_pred cccccc-cccCCcCCcCccccccccC--CCceEEEEC-CCCCcCCCCCCccceEEEecccCCCccccccccccccceecc
Q 004952 507 TELSSA-YIQGSLLQPQAFGAFSTAT--MTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM 582 (722)
Q Consensus 507 TE~~~~-~~~~~~~~~~~~~~iG~p~--~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~ 582 (722)
||+++. +...... . ..|.++ ++..+.|+| ++|+++|+|+. |||++... ++..|
T Consensus 230 tE~~~~~~~~~~~~--~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~-------------~~~~~--- 286 (422)
T TIGR02155 230 SEVIGPGVAMECVE--T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTL-------------TKEAL--- 286 (422)
T ss_pred hhhcCCceeecccc--c---CCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecC-------------Ccccc---
Confidence 998521 1111110 0 123333 356678999 58999999996 99998632 12222
Q ss_pred ccCCCceecccCceEEEecC-C-----cEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 583 PMYKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 583 p~~~g~r~yrTGDl~~~~~d-G-----~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
|. .||+|||+++++++ | .+++.||.||+||++|.+|+|.|||++|. .||+|.....+........ +.+
T Consensus 287 p~----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~ 360 (422)
T TIGR02155 287 PV----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DEL 360 (422)
T ss_pred ce----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEE
Confidence 21 28999999999876 4 46899999999999999999999999995 9999985555555544433 578
Q ss_pred EEEEEecCCCC-----CCHHHHHHHHHHHHHhhcCCC--ee--ecCCCCCCCCchhhHH
Q 004952 657 VIFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPL--FK--VVPEFPRTASNKLLRR 706 (722)
Q Consensus 657 ~a~vv~~~~~~-----~~~~~l~~~l~~~l~~~~~p~--~~--~v~~lP~t~~GKvdR~ 706 (722)
+++|+..++.. .+.+.+.+.|++.+.+.+.+. +. .+++||+|+ ||+.|.
T Consensus 361 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 361 TLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMDVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEEEEEECCCCccCCC-CCceEE
Confidence 88877765321 112233444555554444331 22 457999988 998763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=270.74 Aligned_cols=325 Identities=15% Similarity=0.093 Sum_probs=217.1
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh---hcCCCCCCEEEEecCccccchhHH-HHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~lv~ 427 (722)
..+.++++++.|||||||+||+|.+||+++......... ..++.++|+++...+++++.+.+. .++++..|++++.
T Consensus 82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 345678999999999999999999999998765544333 358899999999999888777644 3556778888764
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCC--CccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
.. . ....+++|+++++|++..+|+.+..|.+....... ..++||.+++|||+++++..+++.+.+ +++++|.||
T Consensus 162 ~~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG 237 (445)
T TIGR03335 162 EG-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYG 237 (445)
T ss_pred CC-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCC
Confidence 33 2 23568899999999999999988777654222221 246899999999999998887777654 689999999
Q ss_pred ccccccccccCCcCCcCccccccccCCCceEEEECCC-CCcCCCCCCccceEEEecccCCCccccccccccccceecccc
Q 004952 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584 (722)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~ 584 (722)
+||++... .+.. ......+.+.+.+.|+|++ +.++|+|+. |||+++.-+-.. .. ...|.
T Consensus 238 ~TE~~~~~-~c~~-----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~-------~r-----~~~Pl 297 (445)
T TIGR03335 238 STEGTMCG-ECQA-----VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG-------ER-----CGSLL 297 (445)
T ss_pred hhhhhheE-EecC-----CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC-------cc-----CCceE
Confidence 99986321 1111 1112233356789999976 567999996 999996543210 00 01222
Q ss_pred CCCceecccCceEEEec-C----Cc----EEEEeecCCeeecCceeechHHHHHHHhccC---CCcceeEEEeecCCCCC
Q 004952 585 YKGMCLRRHGDIIKRTV-G----GY----IIVQGRADDTMNLGGIKTSSVEIERVCDQAD---ESILETAAISVSPAGGG 652 (722)
Q Consensus 585 ~~g~r~yrTGDl~~~~~-d----G~----l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~---p~V~~~~vv~~~~~~~g 652 (722)
. -|+|||++++.. + |. +...||.||+++++|.+|+|.+||++|. ++ +++..-.-+.+.....+
T Consensus 298 i----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~~~ 372 (445)
T TIGR03335 298 I----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEEEG 372 (445)
T ss_pred E----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCCCC
Confidence 1 299999999742 2 21 4457999999999999999999999996 74 55543332223222222
Q ss_pred ceEEEEEEEecCCCCCCHHHHHHHHHHH----HHh---hc----C-CC--eeecCCCCCCC-CchhhH
Q 004952 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKA----IQS---KL----N-PL--FKVVPEFPRTA-SNKLLR 705 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~----l~~---~~----~-p~--~~~v~~lP~t~-~GKvdR 705 (722)
...+...|...++...+.+++.+.+.+. ++. .+ + +. .+.-..||+++ .||..|
T Consensus 373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 373 EITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 2355555555543333344555555544 322 11 0 11 11336799984 688655
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=235.09 Aligned_cols=503 Identities=15% Similarity=0.145 Sum_probs=323.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++.+||.+|+..-+. .+....++||++|..+|.++|.+|... +++||.|+++.++++|++++++||+.+|.+++|+
T Consensus 780 ~a~tp~~~a~~~~n~--~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv 857 (1363)
T KOG3628|consen 780 AAKTPDHIAFTTLNA--RGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPV 857 (1363)
T ss_pred hhcCCCceEEEEecc--CCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeecc
Confidence 479999999998665 345667999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCCCCHH------HHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhc
Q 004952 264 ADSFAAR------EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (722)
Q Consensus 264 ~p~~~~~------~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (722)
.|-.... .+..|++.++++.|+++.......+.-+....+...+-..+.+.+.... +|..-..
T Consensus 858 ~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-----------t~~k~~~ 926 (1363)
T KOG3628|consen 858 PPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-----------TIRKRKK 926 (1363)
T ss_pred CCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-----------hhhhhhh
Confidence 9865543 6778999999999999975432222211111111111111111111000 0111111
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHH
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILF 416 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~ 416 (722)
.... .....++....++.+||+-+.--++|.--||..+|.++++.++.......+.+..-++...++.-..|+ ...|
T Consensus 927 ~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcL 1004 (1363)
T KOG3628|consen 927 NIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCL 1004 (1363)
T ss_pred hhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHH
Confidence 1000 111223334466889999999999999999999999999999999988888888888877777766666 4456
Q ss_pred HHhhcCCEEEEecC---CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCC-------ccceeEEEeecCCCCcc
Q 004952 417 SSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD-------WTKIRSFASTGETSNVD 486 (722)
Q Consensus 417 ~~L~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~-------l~~Lr~i~~~Ge~l~~~ 486 (722)
...++|.+.++.+. ..++..|+..|++++|.=++.+=+.+....+....+..+ +++ ..++..-|.....
T Consensus 1005 lgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1005 LGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPRIA 1083 (1363)
T ss_pred HHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccHHH
Confidence 77788988777653 336778999999999999988888888877654332222 222 2233333333333
Q ss_pred hHHHHHhhcc----CC-ccc-------------ccccccccccccccCCcCCcCc-------------cccccccCCCce
Q 004952 487 DDLWLSSKAW----YN-AII-------------ESCGGTELSSAYIQGSLLQPQA-------------FGAFSTATMTAG 535 (722)
Q Consensus 487 ~~~~~~~~~~----~~-~l~-------------n~YG~TE~~~~~~~~~~~~~~~-------------~~~iG~p~~~~~ 535 (722)
+..-+.+.+. .+ .+. +.|-.-|=+....-........ ....|.-.++++
T Consensus 1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence 3333322211 00 111 1222222111110000000000 012377778999
Q ss_pred EEEECC-CCCcCCCCCCccceEEE-----ecccCCCccccccccccccceeccccCCCceecccCceEEEe------cC-
Q 004952 536 LVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT------VG- 602 (722)
Q Consensus 536 ~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~------~d- 602 (722)
+.|+++ ...||..|+ +||+|+ +.+|+...+. ++.+...++.. .....+..|-||||+|... .+
T Consensus 1164 i~IvnPEtk~pc~dge--~GEIW~~S~hnA~~~~~~~d~-~~~~~fn~rl~-~g~~~~~sy~RTG~LGFl~~t~~t~~~~ 1239 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGE--LGEIWVNSAHNASCSFTIGDE-LRSNHFNARLS-SGDLLGKSYARTGDLGFLRRTSLTDANV 1239 (1363)
T ss_pred eEEeCCccccccccCC--cceEEeccccccccccccCch-hhhhhhhhhcc-ccccccccceeeeeeeeeeeeecccccc
Confidence 999995 467888888 599999 3445543211 12222122221 2223466799999999874 22
Q ss_pred ---CcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHH-
Q 004952 603 ---GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS- 678 (722)
Q Consensus 603 ---G~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~- 678 (722)
.-||++|-+++.+-++|.|-.|.+||..+.+.||.|.+|+|+... ..+|..+.... +....+|.-.+.
T Consensus 1240 e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~------glvVvviE~~g--q~~~~~LvPlIv~ 1311 (1363)
T KOG3628|consen 1240 ERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT------GLVVVVIECHG--QQELADLVPLIVN 1311 (1363)
T ss_pred eeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC------CeEEEEEEecC--chhHhhhhHHHHH
Confidence 348899999999999999999999999998899999999998653 35555555543 222223322222
Q ss_pred HHHHh-hcCC-Ceeec--CCCCCCCCchhhHHHHHHHH-hhhh
Q 004952 679 KAIQS-KLNP-LFKVV--PEFPRTASNKLLRRVLRDQI-KHEL 716 (722)
Q Consensus 679 ~~l~~-~~~p-~~~~v--~~lP~t~~GKvdR~~L~~~~-~~~~ 716 (722)
..|.+ +++- ...+| ..||+++.|...|..+++.+ .+++
T Consensus 1312 ~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL 1354 (1363)
T KOG3628|consen 1312 VVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKL 1354 (1363)
T ss_pred HHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhccc
Confidence 22322 3333 22244 47999999999999987754 4433
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=213.28 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=159.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
++.+|+++|+++.++. .+...++||+||.++++++|+.|++ . +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 6 ~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~ 83 (227)
T TIGR03089 6 LAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLA 83 (227)
T ss_pred hhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeC
Confidence 4678999999864321 0122479999999999999999998 8 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCC--CCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI--GNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+ ++++++++++++...... .+...+.+... ..........+..+|.+.+.....
T Consensus 84 n-------------~s~a~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (227)
T TIGR03089 84 G-------------DPDADVVVTGPDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD 139 (227)
T ss_pred C-------------CCCCCEEEeCcchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhccCC
Confidence 4 789999999876532211 11223332110 000000012233456555543221
Q ss_pred CCCCCCCCCc-cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHh
Q 004952 342 HPRPNYYSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
...+. ...++|++.|+||||+ +|++++... ...+++++|+++ .+|++|..++ ..++.+|
T Consensus 140 -----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l 200 (227)
T TIGR03089 140 -----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPL 200 (227)
T ss_pred -----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHh
Confidence 11111 3456999999999985 666655544 556789999999 9999999998 5688999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCc
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVT 447 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt 447 (722)
..|+|+++++ .+++..+++.|+++|||
T Consensus 201 ~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 201 AAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred ccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 9999999996 78999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=205.20 Aligned_cols=319 Identities=24% Similarity=0.221 Sum_probs=222.4
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~ 427 (722)
..+-++...|--||||||+|+-+..+...+-.. ++......+...+|++.....++...+- ...+++--.|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 344566777999999999999999999876443 3333445678899999877776644443 444555556666654
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC--CCCccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
..+ -+-..-+++|+.+++|++.++|+.+..|.+..... ...-.+||.+++|+|+++++..+.+.+.+ ++..++.||
T Consensus 166 ~~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYG 243 (438)
T COG1541 166 ISG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYG 243 (438)
T ss_pred cCC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccc
Confidence 432 34567889999999999999999999998765443 23346899999999999999988888776 788999999
Q ss_pred cccccccc-ccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 506 GTELSSAY-IQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 506 ~TE~~~~~-~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
.||..++- ..+.... -.-..-++.-+.|+| +.|+++|.|+- |||+++.---. ..|
T Consensus 244 ltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~~----------------~~P 300 (438)
T COG1541 244 LTEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTKE----------------GMP 300 (438)
T ss_pred cccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEecccc----------------Ccc
Confidence 99997652 1111111 112344677889999 57999999995 99998542100 122
Q ss_pred cCCCceecccCceEEEecC----Cc-----EEEEeecCCeeecCceeechHHHHHHHhccCCCcc-eeEEEeecCCCCCc
Q 004952 584 MYKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGP 653 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~d----G~-----l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~-~~~vv~~~~~~~g~ 653 (722)
.. -|+|||+++..++ |. ..+.||.||+++++|.+|+|..||.+|. +.+.+. +-.++... +.. .
T Consensus 301 lI----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~-~~~-~ 373 (438)
T COG1541 301 LI----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR-NGG-L 373 (438)
T ss_pred eE----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec-CCC-C
Confidence 22 3999999999763 33 3588999999999999999999999996 899998 44444444 222 2
Q ss_pred eEEEEEEEecCCCCCCHH--HHHHHHHHHHHhhcCC--C--eeecCCCCCCCCchh
Q 004952 654 EVLVIFVVLKKGFTSQPD--KLKMIFSKAIQSKLNP--L--FKVVPEFPRTASNKL 703 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~--~l~~~l~~~l~~~~~p--~--~~~v~~lP~t~~GKv 703 (722)
..+..-|+.+++...... ++.+.+.+.+.+.+.- . ++.+.++|+|-. |.
T Consensus 374 d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~ 428 (438)
T COG1541 374 DELTVRVELENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KA 428 (438)
T ss_pred ceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ce
Confidence 678888888764211112 2224454444433322 1 236689999876 54
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=203.16 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=105.5
Q ss_pred eecccCceEEE-ecCCcEEEEeecCCeeecCc---eeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecC
Q 004952 589 CLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (722)
Q Consensus 589 r~yrTGDl~~~-~~dG~l~~~GR~dd~ik~~G---~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~ 664 (722)
+||+|||+|++ |+||+|+|.||.| +| ++|+|. ||++|. +||+|.+|+|++++++..| +.++|||++..
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~~~ 280 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEAEL 280 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECC
Confidence 39999999998 6999999999998 88 799999 999995 9999999999999999888 99999999874
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 665 GFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 665 ~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
..+.++|+++++++|+. ++|. +.++++||+|+||||+|++|++++.+.
T Consensus 281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~ 329 (365)
T PRK09188 281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQ 329 (365)
T ss_pred --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcc
Confidence 45678999999999999 9995 559999999999999999999986443
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=160.83 Aligned_cols=258 Identities=17% Similarity=0.102 Sum_probs=162.5
Q ss_pred eEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE-EEEecCCCC
Q 004952 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL 433 (722)
Q Consensus 358 ~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~-lv~~~~~~~ 433 (722)
-..+..||||||+|-.+..+........... ....++..++++..+..- .+ .++..+.+... +-.++-..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~---~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRA---DN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEcc---Ch--hHHHHHHhccceeeecCCCcC
Confidence 3567789999999999999998653322221 122355666776654210 11 22233333222 333333345
Q ss_pred hhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccccccccccc
Q 004952 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 513 (722)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 513 (722)
.+.+++.|++++++++.++|+.+..|++.......+ .+++.++++||.+++...+.+.+.+ ++++++.||+|| |.+.
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE
Confidence 678899999999999999999999998864333333 4789999999999998877777665 689999999999 4332
Q ss_pred ccCCcCCcCccccccccCCCceEE--EECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceec
Q 004952 514 IQGSLLQPQAFGAFSTATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (722)
Q Consensus 514 ~~~~~~~~~~~~~iG~p~~~~~~~--vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~y 591 (722)
..+.. +..-.--...-+. ++|++++++| +|+.- .+ ...|.. -|
T Consensus 253 ~eC~~------g~lHl~ed~~~vE~~ivD~~~~~~~---------ViT~L-~n---------------~~~PlI----RY 297 (430)
T TIGR02304 253 STCRC------GTLHLNEDLVHIEKQYLDEHKRFVP---------IITDF-TR---------------TTQPIV----RY 297 (430)
T ss_pred EecCC------CCEEEccccEEEEeeEECCCCceEE---------EEecC-CC---------------ccceEE----ee
Confidence 22211 1111111223333 7887664432 22221 11 012222 29
Q ss_pred ccCceEEEecC----Cc----E-EEEeecCCeeec---Cc--eeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 592 RHGDIIKRTVG----GY----I-IVQGRADDTMNL---GG--IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 592 rTGDl~~~~~d----G~----l-~~~GR~dd~ik~---~G--~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
+|||++++.++ |. | .+.||.||++++ +| ..|.|..|+.++....++|.+.-++... . ..+.
T Consensus 298 rtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~---~--~~l~ 372 (430)
T TIGR02304 298 RLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG---S--AQLE 372 (430)
T ss_pred eCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc---C--CeEE
Confidence 99999998544 32 3 388999999985 34 5559999998854467899998776432 1 4555
Q ss_pred EEEEec
Q 004952 658 IFVVLK 663 (722)
Q Consensus 658 a~vv~~ 663 (722)
..+++.
T Consensus 373 v~~~~~ 378 (430)
T TIGR02304 373 LIADCE 378 (430)
T ss_pred EEEEeC
Confidence 555553
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=143.77 Aligned_cols=488 Identities=13% Similarity=0.082 Sum_probs=288.7
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEe
Q 004952 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s--~~~vv~~lA~~~aGa~~vp 262 (722)
..++..+|.++-+.+| ....+||..+..++.+.|+.-+.. .+++|+|.++...+ .++++.+++|.-+|.+.+|
T Consensus 105 nhs~~~ta~i~id~kg---k~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKKG---KATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCCC---ceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 4567888888877742 367999999999999999955444 99999999998765 7999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+.+.++.+++..+++-...+++++.....+.+...- .. ... .....|....+-....
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~----------~~------------~s~-~k~v~~w~t~~~k~~~ 238 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFINDN----------SP------------VSL-AKAVAWWKTNDFKGNY 238 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc----------Cc------------ccH-HHHHHhhhccccccee
Confidence 999999999999999999999999876543221110 00 000 0000010000000000
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh--------------------hhcCCCCCCEEEE
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--------------------AHIDLKVGDVYCW 402 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~--------------------~~~~~~~~d~~l~ 402 (722)
.-.....+...-. ..||-||++++|.--||+.+|+ ++...+... ..++....++++.
T Consensus 239 -~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 239 -TKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred -ehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 0000001111112 7899999999999999999997 433322111 1133444556655
Q ss_pred ecCccccchh-HHHHHHhhcCCEEEEecCCC--ChhhHHHHHHHhCCcEEechhHHHHHHHhc----C-------CCCCC
Q 004952 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT----N-------CLEGL 468 (722)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~-------~~~~~ 468 (722)
....+-..|+ ..++.+|.+|.|.+.++.+. .+..+..++.++|.+++..=-..+++.... + .....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 5544444444 45889999999999998643 456788999999999987754444443221 0 01235
Q ss_pred CccceeEEEeecCCCCcchHH-----HHHhhcc-CCc---------------ccccccccccccccccCCcC--------
Q 004952 469 DWTKIRSFASTGETSNVDDDL-----WLSSKAW-YNA---------------IIESCGGTELSSAYIQGSLL-------- 519 (722)
Q Consensus 469 ~l~~Lr~i~~~Ge~l~~~~~~-----~~~~~~~-~~~---------------l~n~YG~TE~~~~~~~~~~~-------- 519 (722)
++++||.+++.-+.+..+..+ |++.... .++ .+.+=+.+|++....-.+..
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e 475 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGE 475 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccc
Confidence 789999999999998877433 3332110 000 01111123443221111110
Q ss_pred ---------------------CcCccccccccCCC-ceEEEECC-CCCcCCCCCCccceEEEecccCCCccccccccccc
Q 004952 520 ---------------------QPQAFGAFSTATMT-AGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576 (722)
Q Consensus 520 ---------------------~~~~~~~iG~p~~~-~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~ 576 (722)
.......+|.-.++ ..+.|+++ ..+.|..++ ||||||.....+. .+|.-+..|.
T Consensus 476 ~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~e--VGEIwVsS~~~~~-~~~al~~~t~ 552 (1363)
T KOG3628|consen 476 GLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDE--VGEIWVSSNSLGK-LFYALDKQTE 552 (1363)
T ss_pred eeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCc--ceeEEEecCCccc-ceeecccccc
Confidence 00011123444443 55667775 477888888 5999994322221 0111222333
Q ss_pred cceeccc------cCCCceecccCceEEEecCCcEEEEeecCCeee-cCceeechHHHHHHH---------hccCCCcce
Q 004952 577 VYFRGMP------MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVC---------DQADESILE 640 (722)
Q Consensus 577 ~~f~~~p------~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~l---------~~~~p~V~~ 640 (722)
.-|...| .....++.|||=+|++. +|.++|+|-.+|++- ++|-+....+|-..- .+..+.|-+
T Consensus 553 ~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~ 631 (1363)
T KOG3628|consen 553 NTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFD 631 (1363)
T ss_pred ceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEE
Confidence 3343333 22344578999999996 456777776666664 788777765553322 145566777
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHh-hc-CCCee---ecCCCCCCCCchhhHHHHHHHHhh
Q 004952 641 TAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQS-KL-NPLFK---VVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 641 ~~vv~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~~l~~~l~~-~~-~p~~~---~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+.++- . ++++..++-.+.. +.+.-+....+-+.+-. +. .+..+ .-+.||||+-|-|.-..+++.|.+
T Consensus 632 ~saf~------~-E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 632 VSAFE------D-EHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred Eeeee------c-ceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence 76664 1 5555444433322 11111222222223322 22 22222 457899999988999999888754
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-13 Score=105.60 Aligned_cols=69 Identities=33% Similarity=0.488 Sum_probs=60.3
Q ss_pred HHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC---eeecCC-CCCCCCc
Q 004952 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL---FKVVPE-FPRTASN 701 (722)
Q Consensus 626 eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~---~~~v~~-lP~t~~G 701 (722)
|||++|. +||+|.+|+|++.+++..| +.++|||++ +.++|+++++++||.||+|. ++.+++ ||+|+||
T Consensus 1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~G 72 (73)
T PF13193_consen 1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSG 72 (73)
T ss_dssp HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTS
T ss_pred CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCC
Confidence 8999995 9999999999999999888 999999998 34899999999999999993 335677 9999999
Q ss_pred h
Q 004952 702 K 702 (722)
Q Consensus 702 K 702 (722)
|
T Consensus 73 K 73 (73)
T PF13193_consen 73 K 73 (73)
T ss_dssp S
T ss_pred C
Confidence 9
|
... |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-11 Score=102.15 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred ChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC------CCccCCCccccccccHHHHHHHhCCcccccc-
Q 004952 41 DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------PLYWFPSLDQSKLTNLGNALEIHGPKLLGRA- 113 (722)
Q Consensus 41 ~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 113 (722)
+||+|||++ ||+.|++.|.....|+ ||+||++++..... .....+.....+++||.+.+.+.++++.+.+
T Consensus 1 ~hq~~Pf~~-lv~~l~~~r~~~~~pl--fqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~ 77 (91)
T PF13745_consen 1 EHQDYPFER-LVEALGPPRDPSRNPL--FQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLE 77 (91)
T ss_dssp -T--S-HHH-HHHHT-----TTS-SS---SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEE
T ss_pred CCccCCHHH-HHHHhCcccCCccccc--cCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEE
Confidence 699999999 9999999998888888 99999998765432 2223344467899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhCH
Q 004952 114 YKDPITSFRLFQKFTVEHP 132 (722)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~ 132 (722)
|++ ++|++++|++|
T Consensus 78 Y~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 78 YNT-----DLFSEETIERM 91 (91)
T ss_dssp EET-----TT--HHHHHHH
T ss_pred EEh-----HhCCHHHHhcC
Confidence 999 99999999875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-08 Score=103.50 Aligned_cols=237 Identities=18% Similarity=0.101 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCC--CEEEEecCccccch-----hHHHHHHhhcC
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVG--DVYCWPTNLGWVMG-----PVILFSSFLNG 422 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~--d~~l~~~~~~~~~~-----~~~~~~~L~~G 422 (722)
.+++++..++.||||||.|--+.+.+..+....... ...+..... -.++...|-..... .......+..+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 345667789999999999866666665554433222 222222111 12333333221111 12233334455
Q ss_pred CEEEEecCCCChhhHHHHH----HHhCCcEEechhHHHHHHHhcCCCCC--CCcc-ceeEEEeec------CCCCcc-hH
Q 004952 423 ATLALYQGSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLEG--LDWT-KIRSFASTG------ETSNVD-DD 488 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i----~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~-~Lr~i~~~G------e~l~~~-~~ 488 (722)
..-.+-....+.+.+.+.+ .+.++..+++.|.++-.++....... ..|+ ..+.+-.|| |.++.+ ..
T Consensus 166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~ 245 (365)
T PF04443_consen 166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY 245 (365)
T ss_pred ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence 5533322334555555444 35567888888887666554322222 2333 344454544 345443 34
Q ss_pred HHHHhhccC---CcccccccccccccccccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEecccCC
Q 004952 489 LWLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLG 564 (722)
Q Consensus 489 ~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~ 564 (722)
..+.+.++. ..+++.||+||............ .+.|.. +.|.|+ +.+++|.|++ |-|.+-..+..
T Consensus 246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~~ 314 (365)
T PF04443_consen 246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLANT 314 (365)
T ss_pred HHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEccccc
Confidence 445554532 36999999999775443331111 123323 777785 5899999996 77776322211
Q ss_pred CccccccccccccceeccccCCCceecccCceEEEecC--------CcEEEEeecCCeeecCceee
Q 004952 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADDTMNLGGIKT 622 (722)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~d--------G~l~~~GR~dd~ik~~G~ri 622 (722)
. .++. .-|.|+|++..+ .+++++||.+. -.+||-..
T Consensus 315 s-------------------~p~~--IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs~ 358 (365)
T PF04443_consen 315 S-------------------YPGF--ILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCSL 358 (365)
T ss_pred C-------------------CCcE--EEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcHH
Confidence 0 1122 459999988654 27999999863 34555544
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=90.15 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=56.0
Q ss_pred cccCceEEEec--CC--cEEEEeecCCeeecCceeechHHHHHHHhcc----CCCcceeEEEeecCCCCCceEEEEEEEe
Q 004952 591 RRHGDIIKRTV--GG--YIIVQGRADDTMNLGGIKTSSVEIERVCDQA----DESILETAAISVSPAGGGPEVLVIFVVL 662 (722)
Q Consensus 591 yrTGDl~~~~~--dG--~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~----~p~V~~~~vv~~~~~~~g~~~l~a~vv~ 662 (722)
|+.||+++... ++ .|+|+||.+.++++.|+++.-.+|+.+|.+. .-.+.+..+......... ..-+.|+.+
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~ 449 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWEL 449 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEE
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEe
Confidence 89999999853 45 7999999999999999999999999999643 233566666655222222 566677777
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 004952 663 KKGFTSQPDKLKMIFSKAI 681 (722)
Q Consensus 663 ~~~~~~~~~~l~~~l~~~l 681 (722)
+.. ..+.+.+.+.|.+.|
T Consensus 450 ~~~-~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 450 EGE-PDDLEELAKALDESL 467 (528)
T ss_dssp CS--HHHHHHHHHHHHHCS
T ss_pred CCC-chHHHHHHHHHHHHh
Confidence 653 112234444444433
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=74.10 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=38.0
Q ss_pred ecccCceEEEec----CCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 590 LRRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 590 ~yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
-|+.||.++... --.|.|+||.+.++++.|.++.-.+++.+|.
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~ 455 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVE 455 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHH
Confidence 389999999853 3468999999999999999999999999885
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.012 Score=65.73 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=37.2
Q ss_pred ecccCceEEEe----cCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 590 LRRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 590 ~yrTGDl~~~~----~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
-||.||+++.. .--.|.|++|.+-+..+.|.+..-.++-.++.
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~ 468 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVK 468 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHH
Confidence 38999999874 45679999999999999999999999888775
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0087 Score=66.89 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=37.5
Q ss_pred ecccCceEEE----ecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 590 LRRHGDIIKR----TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 590 ~yrTGDl~~~----~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
-||.||+++. +.--.|.|++|.+.+..+.|.+..-.++-.++.
T Consensus 416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~ 462 (606)
T PLN02247 416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVT 462 (606)
T ss_pred EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHH
Confidence 3899999987 445679999999999999999999999988775
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=53.67 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=52.2
Q ss_pred ceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCC---CHHHHHHHHHHHHHhhcC--CCee--e
Q 004952 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLN--PLFK--V 691 (722)
Q Consensus 619 G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~~~--p~~~--~ 691 (722)
|.+|+|..||++|. ++|++....-+.+....+. +.+...|...++... +.+++.+.++++|.+.+. |... .
T Consensus 1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v~~~~~~-D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~ 78 (96)
T PF14535_consen 1 GVNVFPSQIEEVLR-EFPEVSPEYQIVVTREGGL-DELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVP 78 (96)
T ss_dssp TEEE-HHHHHHHHC-TSTTEEEEEEEEEEEETTE-EEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-
T ss_pred CcEECHHHHHHHHH-hCcCCCCcEEEEEEcCCCC-cEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEEC
Confidence 78999999999995 9999994444444433333 778888888875432 235677777777766543 3322 4
Q ss_pred cCCCCCCCCchhhH
Q 004952 692 VPEFPRTASNKLLR 705 (722)
Q Consensus 692 v~~lP~t~~GKvdR 705 (722)
..+||++ .||..|
T Consensus 79 ~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 79 PGTLPRS-EGKAKR 91 (96)
T ss_dssp TT-S----SSSS-S
T ss_pred CCCccCC-CCcceE
Confidence 5689997 678654
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.81 Score=49.15 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=68.8
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEE
Q 004952 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV--RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285 (722)
Q Consensus 209 ~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~--~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il 285 (722)
-+|..++...+..+|+.|... +.+||+|.++..-+. .-+...+|+.++|++++|+.+. .-++-..++++.++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence 589999999999999999999 999999999876221 1266789999999999999884 456667799999999999
Q ss_pred eccch
Q 004952 286 TQDFI 290 (722)
Q Consensus 286 ~~~~~ 290 (722)
+..++
T Consensus 188 ~tps~ 192 (438)
T COG1541 188 ATPSY 192 (438)
T ss_pred EChHH
Confidence 98864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 722 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 3e-38 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 4e-38 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 4e-38 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 5e-38 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-37 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 3e-37 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-37 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 7e-24 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-11 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 4e-10 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 4e-10 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-09 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 7e-08 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-07 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 5e-07 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 5e-07 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-06 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-06 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-06 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-05 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 4e-05 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 1e-04 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 2e-04 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-04 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-04 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 5e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 1e-53
Identities = 123/566 (21%), Positives = 201/566 (35%), Gaps = 74/566 (13%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
P ++ N A L + + T A + TY EL E+ A+AL
Sbjct: 17 EAPPALFNFAA--YLFRLNETRAGKT-AYIDDTGS--------TTYGELEERARRFASAL 65
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
T+ + I + M TV + +L + AG V V + L S A+ +
Sbjct: 66 RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
++ ++ L +A L P +++ + +
Sbjct: 126 ASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AA 172
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWP 403
D + L+SSG+TG+PK T +++ TAE +A + + DV
Sbjct: 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSA 231
Query: 404 TNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462
L + G L GAT L P + + + TV VP+L +
Sbjct: 232 AKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGSL 518
L IR S GE ++ + + I++ G TE+ ++ +
Sbjct: 292 PNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL-SNR 345
Query: 519 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNAD 573
+G + + DE G PD + VG++ +Y N +
Sbjct: 346 AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMYWN------NRE 397
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
F G R GD R G + GR+DD + + G S VE+E V Q
Sbjct: 398 KSRATFLG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKV 691
+++LE A + V G FVVLK+ F + + F K +L P K
Sbjct: 451 -HDAVLEAAVVGVDHGGL--VKTRAFVVLKREFAPSEILAEELKAFVKD---RLAP-HKY 503
Query: 692 ------VPEFPRTASNKLLRRVLRDQ 711
V + P+TA+ K+ R LR+Q
Sbjct: 504 PRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 3e-46
Identities = 123/580 (21%), Positives = 203/580 (35%), Gaps = 98/580 (16%)
Query: 173 LNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM 229
N A L K + A+ W + E ++EL E AN L
Sbjct: 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELM---WNFRELSENSQQAANVLSGA 93
Query: 230 F--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I
Sbjct: 94 CGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153
Query: 288 DFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343
D + +V A L+ +L V + L++K L+
Sbjct: 154 D---------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA---- 194
Query: 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403
+ V I F+SGT+G PK + S L+ D+
Sbjct: 195 -STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253
Query: 404 TNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVK 457
++ GW++ + L + GA ++ + K + + + P L++
Sbjct: 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAY 513
L + +++ + GE+ + + W I ES G TE +
Sbjct: 314 QD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE-TGLT 362
Query: 514 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYL 563
S G TA + I+D+ G P G+ +G+F Y+
Sbjct: 363 CMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGYV 420
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
D+ + + GD + GY GRADD +N G +
Sbjct: 421 DNPDKTAANIRGDFWLL-------------GDRGIKDEDGYFQFMGRADDIINSSGYRIG 467
Query: 624 SVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAI 681
E+E +++ETA IS P G EV+ FVVL F S ++L K +
Sbjct: 468 PSEVENAL-MEHPAVVETAVISSPDPVRG--EVVKAFVVLASQFLSHDPEQLT----KEL 520
Query: 682 Q----SKLNPLFKV------VPEFPRTASNKLLRRVLRDQ 711
Q S P +K V P+T + K+ R LRD+
Sbjct: 521 QQHVKSVTAP-YKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 2e-42
Identities = 124/636 (19%), Positives = 214/636 (33%), Gaps = 108/636 (16%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDRTDKSKHGGTWLPGSVLNIAEC 178
H + + K ++ + F + + + L N A
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTD--FESYEDFQENFKILVPENFNFAYD 60
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
+ + R +A++W +D +E T+K+L+ AN KGD +
Sbjct: 61 VV--DVYARDSPEKLAMIWCDDYGNEKIF---TFKDLKYYSDKAANFFVKHGIGKGDYVM 115
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
+ + L + G + V R+I R+ + K I
Sbjct: 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA----EDDVP 171
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSPVYNPVD 356
+ +P VG + E + ++ L S RP D
Sbjct: 172 EQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVST-KNED 226
Query: 357 AVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-PTNLGWVMGP 412
+ + FSSGT G PK + L I TA+ W +++ ++ + + GW
Sbjct: 227 ICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLH-YTVADSGWGKCV 281
Query: 413 V-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLE 466
L+ ++ G + +Y E ++ + GVT P L+K L
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----LS 336
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYIQGSLLQ 520
+++ ++ GE N +++ + ++E G TE ++ A +
Sbjct: 337 HYNFSTLKYAVVAGEPLN--PEVF---NRFLEFTGIKLMEGFGQTETVVTIATFPWMEPK 391
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLGASDRLL 570
P G+ T + ++D G + GE VGLF Y +R
Sbjct: 392 P---GSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
H+ Y GD+ GY+ GRADD + G K E+E
Sbjct: 447 ETWHDGYYHT-------------GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESA 493
Query: 631 CDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQ--- 682
++LE A V P +V+ +VL K +T D LK +Q
Sbjct: 494 L-IQHPAVLECAITGV------PDPVRGQVIKATIVLTKDYTPS-DSLK----NELQDHV 541
Query: 683 -SKLNPLFKV------VPEFPRTASNKLLRRVLRDQ 711
+ P +K VPE P+T S K+ R +RD+
Sbjct: 542 KNVTAP-YKYPRIIEFVPELPKTISGKIRRVEIRDK 576
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-39
Identities = 161/675 (23%), Positives = 256/675 (37%), Gaps = 139/675 (20%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGG 165
+ R +P +++ ++ P+ +W K + + + + + +
Sbjct: 11 ANIADRCLINPEQYETKYKQ-SINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSI 67
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W LN+A CL H ++ + AI+W D +S ++Y+EL V AN
Sbjct: 68 KWYEDGTLNLAANCL--DRHLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANT 123
Query: 226 LDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATR 275
L + KGD +AI MPM A + LA +I G F+ +A
Sbjct: 124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGC 174
Query: 276 LRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLRE 327
+ S ++ + T D +R GR PL V IVL G+D+ R
Sbjct: 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR- 233
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W+D + + P ++A + IL++SG+TG+PK + T T
Sbjct: 234 -DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------T 278
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLE 434
G +A D GD+Y W T ++GWV G +L+ GAT +++G P
Sbjct: 279 G-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 435 RSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNV 485
+ + V V +L T P+ ++A EG + +R S GE N
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN- 391
Query: 486 DDDLWLSSKAWYNAIIESCGGTELSSAYI-----Q----GSLLQPQAFGAFSTATMTAGL 536
+ W WY I G + Q G ++ P GA +A
Sbjct: 392 -PEAWE----WYWKKI---GK---EKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATR 439
Query: 537 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 580
++D G P G L +D R L DHE + YF
Sbjct: 440 PFFGVQPALVDNEGHPQEG-----ATEG----NLVITDSWPGQARTLFGDHERFEQTYF- 489
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+K M GD +R GY + GR DD +N+ G + + EIE A I E
Sbjct: 490 --STFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAE 544
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK-----VVPEF 695
A + + A G + + +V L G +L ++ ++ PL
Sbjct: 545 AAVVGIPHAIKG-QAIYAYVTLNHGEEP-SPELYAEVRNWVRKEIGPLATPDVLHWTDSL 602
Query: 696 PRTASNKLLRRVLRD 710
P+T S K++RR+LR
Sbjct: 603 PKTRSGKIMRRILRK 617
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 4e-33
Identities = 108/555 (19%), Positives = 188/555 (33%), Gaps = 92/555 (16%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI +Y+EL + +A + + D + + +P +
Sbjct: 42 IAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK 310
A+ G + V S + EI ++A D G L +V P LK
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLK 152
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
I++ G E+ L +D + P V + S G+TG
Sbjct: 153 NIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGL 196
Query: 371 PKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGA 423
K IP T + S++ + E L VY N V+ G
Sbjct: 197 SKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGG 251
Query: 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
+ L SP + +F ++ VT+ VP L W + D + ++ G
Sbjct: 252 RVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG-- 307
Query: 483 SNVDDDLWLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL-- 539
+ + KA + ++ G E G + + T G +
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAE-------GLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 540 DECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------C 589
DE V D+ GE G + RG + Y
Sbjct: 361 DESRVWDDHDRDVKPGETG------------------HLLTRGPYTIRGYYKAEEHNAAS 402
Query: 590 LRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
G DI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMV 461
Query: 645 SV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNK 702
S+ G E +F++ + + + + + + K+ + V FP+T K
Sbjct: 462 SMPDQFLG--ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGK 519
Query: 703 LLRRVLRDQIKHELS 717
+ ++ LR+ I +L
Sbjct: 520 VSKKALREAISEKLL 534
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-32
Identities = 113/577 (19%), Positives = 185/577 (32%), Gaps = 117/577 (20%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
R +++A++ E + ++Y+EL + +A +L G+ + +
Sbjct: 34 TRHAASDSIAVIDGERQ--------LSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
I + A++ G V S E+ + + + L+S
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR-------QHALFSGD 138
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
+I + D + ++++ +P P D V
Sbjct: 139 DFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQL 191
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 416
S GTTG PK IP T S+R + E Y N P L
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL- 246
Query: 417 SSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475
FL G T+ L S F ++ V V VP V W
Sbjct: 247 GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLWLQ-------------- 290
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQ------GSLLQPQAFGAFS 528
A S L+S K GG LS+ G LQ Q FG
Sbjct: 291 -ALIEGESRAQ----LASLKLLQ------VGGARLSATLAARIPAEIGCQLQ-QVFG--- 335
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEV----------- 577
M GLV + + G P+ + +A+ +
Sbjct: 336 ---MAEGLVN---YTRLDDSAEKIIHTQGY-PMCPDDEVWVADAEGNPLPQGEVGRLMTR 388
Query: 578 -------YFRGMPMYKGMCLRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
Y++ P + +G D+I GYI VQGR D +N GG K ++
Sbjct: 389 GPYTFRGYYK-SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK----A 680
EIE + +++ A +S+ G E ++V+K+ +++ F + A
Sbjct: 448 EIENLLL-RHPAVIYAALVSMEDELMG--EKSCAYLVVKEPLR--AVQVRR-FLREQGIA 501
Query: 681 IQSKLNPLFKVVPEFPRTASNKLLRRVLRDQIKHELS 717
KL + V P TA K+ ++ LR + S
Sbjct: 502 EF-KLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 537
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 82/418 (19%)
Query: 126 KFTVEHPEAYW-EIALKEIS--VVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
K ++E P ++ A + ++ F + S W LN C+
Sbjct: 31 KESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV-- 88
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAIDM 240
H K N AI++ D + +TYKEL E+V VA L KGD +A+ M
Sbjct: 89 DRHALKTPNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYM 146
Query: 241 PMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
PM A+I LA ++ AG F++ + R+ +K + T D
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSKVVITTDESN 197
Query: 292 RGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRP 345
RGG+ V L P +V N + +DL W
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEKKKY-----K 251
Query: 346 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 394
YY PVD+ + +L++SG+TG PK + + TA G A + D
Sbjct: 252 TYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGALLTMRYTFDT 301
Query: 395 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 449
DV+ + ++GW+ G +++ L G +++G+P ++ ++ + + VT
Sbjct: 302 HQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQF 360
Query: 450 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII 501
P+ ++ + G + + +R S GE ++W WY+ I
Sbjct: 361 YVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE----WYSEKI 408
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 31/164 (18%)
Query: 573 DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
+H+ + Y Y G GD + GYI + GR DD +N+ G + S+ EIE
Sbjct: 489 NHDRYLDTYL---NPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEA 543
Query: 630 VCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQP------DKLKMIFS 678
D + E A + G + + FVVLK + +K
Sbjct: 544 AII-EDPIVAECAVV------GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLV 596
Query: 679 KAIQSKLNPLFK-----VVPEFPRTASNKLLRRVLRDQIKHELS 717
++ + P +V + P+T S K++RR+LR + E
Sbjct: 597 FTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 640
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 94/559 (16%), Positives = 179/559 (32%), Gaps = 114/559 (20%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLA 252
+AI ++ TY+ L + L+A L + + + + +++++I+ A
Sbjct: 18 IAITDGQES--------YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHA 67
Query: 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI 312
LA + I E+ ++R + IF PL + L I
Sbjct: 68 CWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDI 118
Query: 313 VLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
G+ + + +V P+ +D + +I+F+SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 372 KAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
KA+P T + +A G + + + + G +L + + G T+ +
Sbjct: 179 KAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
E+ +++ +T + VP + + ++ G + + +
Sbjct: 238 FNAEQIL-TMIKNERITHISLVPQTLNWLMQQ---GLHEPYNLQKILLGG--AKLSATMI 291
Query: 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--- 547
++ + I S G TE S Q P+ D G+P
Sbjct: 292 ETALQYNLPIYNSFGMTETCS---QFLTATPE-----------MLHARPDTVGMPSANVD 337
Query: 548 ----DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGMCLRR-------- 592
+ G E+ +G M Y L
Sbjct: 338 VKIKNPNK--EGHG------------------ELMIKGANVMNGY----LYPTDLTGTFE 373
Query: 593 ----H-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
+ GDI + GY+++ R D + GG +IE V Q I + +
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCV--- 429
Query: 648 PAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFP 696
G P +V ++ V + + +L + L +KV V P
Sbjct: 430 ---GHPDDTWGQVPKLYFVSESDIS--KAQLIA-YLSK---HLAK-YKVPKHFEKVDTLP 479
Query: 697 RTASNKLLRRVLRDQIKHE 715
T++ KL R L + H
Sbjct: 480 YTSTGKLQRNKLYREGHHH 498
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y E E+ + AL IA+ I +A + G V + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ L +SK +F+ KV+ + + D
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162
Query: 329 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 383
F+ + ++ + + + V I+ SSG+TG PK + T ++
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 439
+ + G G + G + + L + +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+QD T + VP+L + L D + + AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVP- 693
SI + V P G E+ VVL+ G ++ + S+++ K +
Sbjct: 464 PSIFDAGVAGVPDPVAG--ELPGAVVVLESGKNMTEKEVM----DYVASQVSN-AKRLRG 516
Query: 694 ------EFPRTASNKLLRRVLRDQIKHELS 717
E P+ + K+ R +R+ +K ++
Sbjct: 517 GVRFVDEVPKGLTGKIDGRAIREILKKPVA 546
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY E E + +A A+ + I + +++ + L + G V D +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 323
RE+ + +S+ +F K+L K I++ + + G
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161
Query: 324 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 378
S F++S ++ ++ + I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 379 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 435
+ + G + G + L + R
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270
Query: 436 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
F + +QD + VP+L + + ++ D + + AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVP- 693
+I + + G E+ VVL+ G T ++ + S++ K +
Sbjct: 462 PNIFDAGVAGLPDDDAG--ELPAAVVVLEHGKTMTEKEIV----DYVASQVTT-AKKLRG 514
Query: 694 ------EFPRTASNKLLRRVLRDQIKHELS 717
E P+ + KL R +R+ +
Sbjct: 515 GVVFVDEVPKGLTGKLDARKIREILIKAKK 544
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-24
Identities = 110/585 (18%), Positives = 177/585 (30%), Gaps = 136/585 (23%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI + A V D MTY ++ A+ L + +
Sbjct: 16 KNIGW---MLRQRATVSPRLQAYVEPST--DVR----MTYAQMNALANRCADVLTALGIA 66
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGD +A+ MP +V ++ G V V I AA E++ L S +K +
Sbjct: 67 KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
P+ + A V IG D S + L S
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
D + I+++SGTTG PK + T S + + ID++ D +
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL-------LPL 218
Query: 412 PVILFSSF-LNGATLALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTN 463
P +F L + +G F + + V + G VP+++ R
Sbjct: 219 P--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
LD R F + G + + + L A +++ TE G+LL +
Sbjct: 277 EFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG---GTLLLSE- 330
Query: 524 FGAFSTATMTAGLVILDECGVPYP---------DDQPCVGEVGLFPLYLGASDRLLNADH 574
L G D G
Sbjct: 331 ----------DALRKAGSAGRATMFTDVAVRGDDGVIREHGEG----------------- 363
Query: 575 EEVYFRG---MPMYKGMCLRR-------------H-GDIIKRTVGGYIIVQGRADDTMNL 617
EV + + Y R GDI + GY+ ++ R D +
Sbjct: 364 -EVVIKSDILLKEY----WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS 418
Query: 618 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDK 672
GG EIE V + E A I + P E+ VV + +
Sbjct: 419 GGENVYPAEIESVIIGVPG-VSEVAVIGL------PDEKWGEIAAAIVVADQN-EVSEQQ 470
Query: 673 LKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRRVLRDQ 711
+ + +L +K+ PR + K+L+ VLR+Q
Sbjct: 471 IVE-YCGT---RLAR-YKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 85/575 (14%), Positives = 161/575 (28%), Gaps = 118/575 (20%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
+A+ + + + A + R +T+++ + +A+ L
Sbjct: 6 FTLAD---VYRRNAALFPDRTAFMVDGVR--------LTHRDYLARAERLASGLLRDGVH 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
GD +AI + + A+ L G +++ + A EIA L +
Sbjct: 55 TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ + VL + + + + F P
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
I+ ++ G P+ +Q + + + L DV L V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 412 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
++ + G + F + ++ VTV+ ++ +
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFAPML--GNILDQAA 267
Query: 467 GLDWTKIRSFASTG--ETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQA 523
+R+ ET + NA + G +E S + +
Sbjct: 268 PAQLASLRAVTGLDTPET------IERFEATCPNATFWATFGQSETSGL---STFAPYRD 318
Query: 524 -FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
+ + ++D P P GEVG E+ RG
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLP-----PGEVG------------------EIVLRGP 355
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRAD--DTMNLGGIKTSSVEI 627
Y R GD+ + GY+ GRA + + GG E+
Sbjct: 356 TVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415
Query: 628 ERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
E Q +I + I V P E + V K G + D L F +
Sbjct: 416 EGALKQ-HPAIADAVVIGV------PDPQWSEAIKAVCVCKPGESIAADAL-AEFVAS-- 465
Query: 683 SKLNPLFKV------VPEFPRTASNKLLRRVLRDQ 711
+ +K V P+ A + R ++
Sbjct: 466 -LIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTA 498
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 40/299 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
AI+ E + M + E+ E +A+ + KG+ + + +P ++ V+
Sbjct: 34 EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ V I + + E+ L S+A + + + VL +
Sbjct: 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
+ + + + S + + S ++ + NP + V I ++ GTTG
Sbjct: 148 ERVFVVG----------GEVNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTG 193
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALY 428
PK + T + + L D ++G + +F S L +
Sbjct: 194 MPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVT 244
Query: 429 QGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 478
G+ + + ++ T VP + NT + DW+ ++ FA+
Sbjct: 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+ G++ Q R + + G + E+E + E++++ A I G
Sbjct: 421 GDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL-MKHEAVMDVAVIGKPDEEAG- 478
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRR 706
EV F+VLK + + D+ +I + ++ +++ +K V E PRTAS KLLRR
Sbjct: 479 -EVPKAFIVLKPEYRGKVDEEDII--EWVRERISG-YKRVREVEFVEELPRTASGKLLRR 534
Query: 707 VLRDQIK 713
+LR++
Sbjct: 535 LLREKEA 541
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-23
Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 40/266 (15%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ +A + ++ D + + +P V+ +LA G + F
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S K I T+ K+ +V+ I ++ +P+ E
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
L + + S V D VV + +SSGTTG PK + T ++S+
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257
Query: 386 AEGWA-HIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL------ 433
+G ++ DV L + +S + L G+ +
Sbjct: 258 VDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIMPKF 305
Query: 434 -ERSFGKFVQDAGVTVLGTVPSLVKA 458
+ +Q VTV VP +V A
Sbjct: 306 EINLLLELIQRCKVTVAPMVPPIVLA 331
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-22
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 41/289 (14%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI+ E + ++Y EL +A L KGD + +P I++
Sbjct: 47 LAIICGERQ--------LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
A++ AG VV++ S E+ ++ + K + + ++S L
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD 151
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
V + + + + D D++ + P + P D V S G+TG P
Sbjct: 152 -VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 372 KAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGAT 424
K IP T S+R +AE L N G
Sbjct: 207 KLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGC 261
Query: 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
+ + P F +Q V + VPS V W LE K
Sbjct: 262 VVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW-----LEKAAQYK 303
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+++RT G + V GR D +N GG K +S EIE++ ++ A +++ G
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI-LLHPEVMHAALVAIVDEQFG- 478
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSK---AIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
E F+V + L+ + A KL K++ P TA K+ ++ LR
Sbjct: 479 -EKSCAFIVSRNPELKAVV-LRRHLMELGIAQY-KLPDQIKLIESLPLTAVGKVDKKQLR 535
Query: 710 DQIKHELS 717
+ +
Sbjct: 536 SILNTSTT 543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 6e-21
Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 60/337 (17%)
Query: 160 KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQV 219
+SK ++P + L + L + + ++ + + ++ TY ++
Sbjct: 10 RSKLPDIYIPKN-LPLHSYVL---ENLSNHSSKPCLI------NGANGDVYTYADVELTA 59
Query: 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA+ L+ + +GD I + +P + V+ +L G ++ + E+A +
Sbjct: 60 RRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKA 119
Query: 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDF 335
S+AK + TQ Y KV A +K + + + + L + +
Sbjct: 120 SRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSEL 162
Query: 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-H 391
+ + +P D V + +SSGTTG PK + T ++S+ +G +
Sbjct: 163 TQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217
Query: 392 IDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFV 441
+ DV L + I+ GA + + + + S +
Sbjct: 218 LYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLI 267
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+ V++ VP ++ + + L+ D + +R S
Sbjct: 268 EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--- 691
I + A + + G EV V FVV + + D++K + I ++ +K
Sbjct: 457 PEISDAAVVGLKDEDAG--EVPVAFVVKSEKSQATEDEIK----QYISKQVIF-YKRIKR 509
Query: 692 ---VPEFPRTASNKLLRRVLRDQIK 713
+ P+ S K+LR+ L++++
Sbjct: 510 VFFIEAIPKAPSGKILRKNLKEKLA 534
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-20
Identities = 101/572 (17%), Positives = 167/572 (29%), Gaps = 137/572 (23%)
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
L + A+ + E +TY EL A + +A+
Sbjct: 28 LSPAPTGAPADRPALRFGERS--------LTYAELAAAAGATAGRI----GGAGRVAVWA 75
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPL 299
+ + +A +LAG V + +E+A L S + D L
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA----- 130
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
LGA + + A G + D +
Sbjct: 131 ----LGALERVDVDVRARGAVPEDGADDGDPAL--------------------------- 159
Query: 360 NILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGP 412
++++SGTTG PK + +++ A+ W DV L G V+G
Sbjct: 160 -VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLG- 214
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL---D 469
+ G ++ E + + + G T+L VP++ T +
Sbjct: 215 --ILGPLRRGGSVRHLGRFSTEGAAREL--NDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFS 528
R S + + A +IE G TE + +P+A G
Sbjct: 271 LAGARLLVSGS--AALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRA-G--- 324
Query: 529 TATMTAGLV-------ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
T G+ +++E G P VG E+ RG
Sbjct: 325 ----TVGVPLPGVELRLVEEDGTPIAALDG--ESVG------------------EIQVRG 360
Query: 582 ---MPMYKGM------CLRRHG-----DIIKRTVGGYIIVQGRAD-DTMNLGGIKTSSVE 626
Y G D+ R GY+ + GR D + GG K + E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 627 IERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSK 684
IE + E A P G E +V ++V L + ++
Sbjct: 421 IENALL-EHPEVREAAVTGEPDPDLG--ERIVAWIVPADPAAPPALGTLA----DHVAAR 473
Query: 685 LNPLFKV------VPEFPRTASNKLLRRVLRD 710
L P K + PR K+++R L
Sbjct: 474 LAP-HKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 4e-18
Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 51/305 (16%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ + + +AI ++Y EL + VAN L GD +A +
Sbjct: 11 DKLDDPHKLAIETAAGDK-------ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
V A+++YLA + AG V + + ++ E+ + ++ K + K + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP------SKRDGIAAI 117
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
L G S D + D + IL+
Sbjct: 118 AAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA-----DDLAAILY 162
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGPVILF 416
+SGTTG K + S+ + W DV + G +
Sbjct: 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLFVA---SN 216
Query: 417 SSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473
+ ++ F K + A TVL VP+ + L +
Sbjct: 217 VTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHM 270
Query: 474 RSFAS 478
R F S
Sbjct: 271 RLFIS 275
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+ K GY+ + GR D + GG EIE D ++E+A I V G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFG- 438
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNKLLRR 706
E + VV KG T ++ + +L FK+ V + PR K+ +
Sbjct: 439 -EGVTAVVVRDKGATIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKN 492
Query: 707 VLRDQIKH 714
VLR+ K
Sbjct: 493 VLRETYKD 500
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-14
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + + + + I+ + +
Sbjct: 90 SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S+ + P I ++SGTTG PKA Q ++
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 389 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 441
+ L+ G +V L G+ L ++ T + + P++ + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240
Query: 442 QDAGVTVLGTVP 453
Q VT L P
Sbjct: 241 QQEQVTSLFATP 252
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 22/129 (17%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
D+ T G + + GR DD + GG EIERV A + E I +
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIGL------A 436
Query: 654 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPRTASNK 702
+ + VV + G T D L F ++ S+L FK + + P+ A NK
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDT-FCRS--SELAD-FKRPKRYFILDQLPKNALNK 492
Query: 703 LLRRVLRDQ 711
+LRR L Q
Sbjct: 493 VLRRQLVQQ 501
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 5e-12
Identities = 74/477 (15%), Positives = 136/477 (28%), Gaps = 167/477 (35%)
Query: 10 VEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIW------RELVARKVLKPWHPHGL 63
V+D+ K L EE D I+ + S L R W E+V + V +
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKFV------EEV 86
Query: 64 HQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRL 123
++ Y + + + P S+ + R Y D ++
Sbjct: 87 LRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD-----------RLYNDN----QV 125
Query: 124 FQKFTVEHPEAYWEI--ALKEISVVFREAPKCILDRTDKSKHG--G---TWLPGSV---- 172
F K+ V + Y ++ AL E+ R A ++ G G TW+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVLI-------DGVLGSGKTWVALDVCLSY 174
Query: 173 ------------LNIAECC--------------LLPSNHRRKEDNTVAIVWREDRCDESA 206
LN+ C + N + D++ I R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 207 VNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP----MTVRAVIIYLAIILAGYVVVS 262
L+ K +LV L + + A ++ +T R
Sbjct: 235 RRLLKSKPYEN-CLLV---LLNVQNAKAWNAFNLSCKILLTTRF--------------KQ 276
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP--AIGND 320
+ D +A T + + T D + L K L P LP +
Sbjct: 277 VTDFLSA-ATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---LPREVLT-- 324
Query: 321 VGIPL---------REQDLSWKDFL------------SSVDYHPRPNYYSPVYN-----P 354
P R+ +W ++ SS++ P Y +++ P
Sbjct: 325 -TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFP 382
Query: 355 VDA-----VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----------HIDLKV 396
A ++++++ + + E +++LKV
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY E+ ++ + L + GD +A R + Y A+ G V+ + +
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 326
+EIA L ++ K + + + PL + G ++ V +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 382
E L++++ L R P A + +++GTTG PK + ++ L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 383 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 432
+G A L DV N W + P +++ L GA L +
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258
Query: 433 LERSFGKFVQDAGVTVLGTVP 453
L GVT VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 33/136 (24%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKT-----SSVEIERVCDQADESILETAAISVSP 648
GDI GY+ ++ R D IK+ SSV++E + E A +++
Sbjct: 417 GDIAVWDEEGYVEIKDRLKDL-----IKSGGEWISSVDLENAL-MGHPKVKEAAVVAI-- 468
Query: 649 AGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VPEFPR 697
P E + VV + + + + + +++ E PR
Sbjct: 469 ----PHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF-----AKWQLPDAYVFAEEIPR 519
Query: 698 TASNKLLRRVLRDQIK 713
T++ K L+R LR+Q K
Sbjct: 520 TSAGKFLKRALREQYK 535
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 38/250 (15%), Positives = 76/250 (30%), Gaps = 40/250 (16%)
Query: 191 NTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVII 249
+ A + + D + +T+ +L + + VA L S GD + I P + V+
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVA 98
Query: 250 YLAIILAGYVVVSIA--DSFAARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306
+L + AG + V ++ E + L S I T + + ++ G
Sbjct: 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGE 156
Query: 307 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+P I + + D + + ++SG
Sbjct: 157 SPPSIIEVDLLDLDAP-------------NGYTFKEDEY----------PSTAYLQYTSG 193
Query: 367 TTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPV-ILFS 417
+T P + + + G+ + + W MG V + +
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN--SALVSWLPFYHDMGLVIGICA 251
Query: 418 SFLNGATLAL 427
L G L
Sbjct: 252 PILGGYPAVL 261
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVII 249
N + + +E+ MTY++L + +A L GD + + + +
Sbjct: 26 NKKSCTFLNKELEET----MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 250 YLAIILAGYVVVSIA----DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
+L + AG + V I + + + SK + ++ + L
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELN 135
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
P K + +PAI + S++ + ++ + + + ++S
Sbjct: 136 TNP-KFLKIPAIALE-----------------SIELNRSSSWQPTSIKS-NDIAFLQYTS 176
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAH 391
G+T PK + + L ++ +
Sbjct: 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 15/122 (12%)
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVI 658
+ V GR D + + G +IE + + + AA + L +
Sbjct: 447 HENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHE--YKLTV 504
Query: 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVP---------EFPRTASNKLLRRVLR 709
+K F + + I + ++ P T S K+ R R
Sbjct: 505 MCEVKNRFMDDVAQDNLF--NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCR 562
Query: 710 DQ 711
Sbjct: 563 KH 564
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 73/400 (18%), Positives = 129/400 (32%), Gaps = 99/400 (24%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 409
P + VV + SSGTTG+P + +T I A A + GD G
Sbjct: 90 PREQVVRVHASSGTTGKPTVVGYTA-RDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148
Query: 410 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 464
G + + G + G E+ + ++D ++ PS L+
Sbjct: 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQV-QLIRDFEPKIILVTPSYMLNLIDEMVR--- 204
Query: 465 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 519
+G+D + ++ E W A+ +E+ G + Y ++
Sbjct: 205 -QGMDPAESSLKIGIFGAE-------------PWTQALRNEVETRVGIDALDIYGLSEVM 250
Query: 520 QPQAFGAFSTATMTAGLV---------ILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRL 569
P A G V I+D G PD G G
Sbjct: 251 GP--GVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPD-----GSQG------------ 291
Query: 570 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK---------RTVGGYIIVQGRADDTM 615
E V+ MP+ +R R D+ R + + GR+DD +
Sbjct: 292 -----ELVFTSLTKEAMPV-----IRYRTRDLTALLPPTARAMRRLAK---ITGRSDDML 338
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
+ G+ +IE + + I++S G + + + + S D +
Sbjct: 339 IVRGVNVFPSQIEEIVVALPL-LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397
Query: 676 IFSKAIQSKL------NPLFKVVP--EFPRTASNKLLRRV 707
++ +Q ++ + V+ P TA+ K RRV
Sbjct: 398 ALARELQHRIKTMVGVSSGVTVLAAGGIPATATGK-ARRV 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.59 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.54 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.72 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.69 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.68 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.04 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 97.42 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 97.22 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 94.86 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 81.9 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 81.3 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 81.17 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-92 Score=870.25 Aligned_cols=624 Identities=17% Similarity=0.169 Sum_probs=499.0
Q ss_pred hhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccC----CC-----CCccCCC
Q 004952 20 LEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK----GP-----PLYWFPS 89 (722)
Q Consensus 20 ~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~ 89 (722)
.++..+|.++|+++++. ..+++||++||++ |++.++ ..++|+ +++++++... .. .....+.
T Consensus 308 ~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~---~~~lf~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 378 (1304)
T 2vsq_A 308 LSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD---QPKLID-----HIIVFENYPLQDAKNEESSENGFDMVDV 378 (1304)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS---CSSSCC-----CEEEECSSCHHHHSCCCHHHHSEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC---CCcccc-----eeEEEeecccccccccccccCCceeEee
Confidence 34566777777777777 6666999999999 999886 344544 4444443210 00 1101100
Q ss_pred -ccccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCC
Q 004952 90 -LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGG 165 (722)
Q Consensus 90 -~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~ 165 (722)
....++|||++.+.. ++++...+ |+. ++|++.+++++.++|.++|+++...++.+..++ ++..++...+.
T Consensus 379 ~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~~~~ 452 (1304)
T 2vsq_A 379 HVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLT 452 (1304)
T ss_dssp EECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHHHHT
T ss_pred ecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHHHHHH
Confidence 013467787775532 45666777 888 999999999999999999999988787776653 33333333345
Q ss_pred CcCCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 004952 166 TWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (722)
Q Consensus 166 ~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~ 242 (722)
.|+.+..... ..+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+|+++|
T Consensus 453 ~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~ 523 (1304)
T 2vsq_A 453 GLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKR 523 (1304)
T ss_dssp TTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCS
T ss_pred hcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCC
Confidence 6765543322 133332 345689999999998777 999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCC
Q 004952 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322 (722)
Q Consensus 243 s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (722)
|+++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.........++ .....+.+..
T Consensus 524 s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~~------ 589 (1304)
T 2vsq_A 524 SLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFIDD------ 589 (1304)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESSC------
T ss_pred CHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEecc------
Confidence 99999999999999999999999999999999999999999999875431111111 0011111110
Q ss_pred CCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEE
Q 004952 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (722)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~ 402 (722)
..... .. ...+.....++++|||+|||||||+||||+++|+++++. .+....++++++|++++
T Consensus 590 ---------~~~~~-~~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~ 652 (1304)
T 2vsq_A 590 ---------QTRFE-EQ------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS 652 (1304)
T ss_dssp ---------GGGGG-SC------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE
T ss_pred ---------ccccc-cc------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE
Confidence 00000 00 011223456899999999999999999999999999877 55666788999999999
Q ss_pred ecCccccchhHHHHHHhhcCCEEEEecC--CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 403 PTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
+++++|+.+.+++|.+|++|+++++.+. ..++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++||
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gG 729 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGG 729 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEES
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEec
Confidence 9999999999999999999999999874 347889999999999999999999999998753 22368999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcC---CcCccccccccCCCceEEEECCCCCcCCCCCCccceEE
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~ 557 (722)
|+++++..+.+.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|++ |||+
T Consensus 730 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~ 807 (1304)
T 2vsq_A 730 ERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GELC 807 (1304)
T ss_dssp SCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EEEE
T ss_pred CCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eEEE
Confidence 999999988888877778999999999999765543221 22345689999999999999999999999996 9999
Q ss_pred E-----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 558 v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
| +.||++ +++.|+++|..+|+.+|.|||||||+|||++||+|+|+||+|||||++|+||+|+|||++|.
T Consensus 808 i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~ 881 (1304)
T 2vsq_A 808 ISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ 881 (1304)
T ss_dssp EEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH
T ss_pred EeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH
Confidence 8 356665 67799999999999889999999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
+||+|.+|+|++.++..++ +.++|||+.+. ..+.++++++|+++||.||+| .++++++||+|+||||||++|++.
T Consensus 882 -~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 882 -EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp -HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred -hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 9999999999999887777 89999999865 466789999999999999999 466999999999999999999875
Q ss_pred Hh
Q 004952 712 IK 713 (722)
Q Consensus 712 ~~ 713 (722)
..
T Consensus 958 ~~ 959 (1304)
T 2vsq_A 958 DQ 959 (1304)
T ss_dssp CG
T ss_pred ch
Confidence 44
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-86 Score=761.66 Aligned_cols=577 Identities=25% Similarity=0.372 Sum_probs=467.8
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCC-CCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
+|..+.++++++++.||..+++. +.|.+++.++++.... ..+..+||.++..|.+.+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 46778899999999999999875 5788888888764321 133568999999999999988765 578999999985
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
+. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhh---cCC----CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCC
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (722)
++++++||+++...+.++.++....+.+ ..+ ..++++......... ......+|++++..... ..+.
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999877665555554433322 221 234444322111100 11234567777654322 1223
Q ss_pred ccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEe
Q 004952 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (722)
Q Consensus 351 ~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~ 428 (722)
....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876654 44556899999999999999999998 7899999999999999
Q ss_pred cCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhcc--CCccc
Q 004952 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (722)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~--~~~l~ 501 (722)
++. .++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 853 478899999999999999999999999998653 34567899999999999999999999988764 37899
Q ss_pred ccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccc-cccccccce
Q 004952 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEEVYF 579 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~-~~~~t~~~f 579 (722)
|.||+||++++++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|+ +++.+.+.|
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 99999999976555433 234566899999999999999999999999984 99999542222222233 334443333
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
.. ...+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++||
T Consensus 489 ~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~ 562 (652)
T 1pg4_A 489 FS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAY 562 (652)
T ss_dssp HS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred hh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEE
Confidence 21 11239999999999999999999999999999999999999999995 9999999999999998887 899999
Q ss_pred EEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 660 VVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 660 vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
|+++++...+ .++|+++|+++|+.||+|. ++++++||+|+||||+|++|++++.+++
T Consensus 563 Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 563 VTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 9998875544 4789999999999999995 5599999999999999999999988753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-85 Score=759.03 Aligned_cols=583 Identities=24% Similarity=0.361 Sum_probs=466.6
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCC---C-CCCCCCCcCCCCccchhhhcccCcccCCCC
Q 004952 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (722)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~ 189 (722)
+...+.+|..++++++++++.||..+++.. +.|.+++.++++.. . ...+..+||.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444556788899999999999999998852 57999999988764 2 2233369999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~ 267 (722)
||++|+++.+. +.+..+++||+||+++++++|++|+ +. |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1233468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc---CC--CcEEEEcCCCC-CCCCCCCCCCCCHHHHhcccCC
Q 004952 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP--LKAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 268 ~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+.+++.++++++++++||+++...+.++.++....+.+. .+ ..++++..... .... ......+|.++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC
Confidence 999999999999999999998877666666554443332 22 23444433211 0000 11234567777654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHh
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345689999999999999999999999999876654 34456899999999999999999998 7889999
Q ss_pred hcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++|++++++++. .++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 477899999999999999999999999987654 345678999999999999999999999887
Q ss_pred cc--CCcccccccccccccccccCCc--CCcCccccccccCCCceEEEECC-CCCcCCC-CCCccceEEEecccCCCccc
Q 004952 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGLFPLYLGASDR 568 (722)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~-G~~giGel~v~~~y~~~~~~ 568 (722)
++ .++++|.||+||++++++.... ..+...+++|+|++|++++|+|+ +|+++|. |+. |||++...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 64 3789999999999876555433 23456789999999999999998 9999998 874 999994321111122
Q ss_pred cc-cccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeec
Q 004952 569 LL-NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (722)
Q Consensus 569 ~~-~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~ 647 (722)
|+ +++.+.+.|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 486 y~~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFN 560 (663)
T ss_dssp ETTCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCC
T ss_pred cccChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEe
Confidence 33 444444433211 123 9999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCC---C-C------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 648 PAGGGPEVLVIFVVLKKGFT---S-Q------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++..| +.++|||+++++.. . + .++|+++|+++|+.||+|. ++++++||+|+||||+|++|++++.++
T Consensus 561 ~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 98777 89999999987643 2 2 4789999999999999995 559999999999999999999988765
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-81 Score=707.70 Aligned_cols=502 Identities=18% Similarity=0.172 Sum_probs=381.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 347899999999987432233345999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|+++... +.............+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999997542 2223333333332222221 123456666654432
Q ss_pred CCCCCCCccCC-CCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
........ ++++|||+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 48999999999999999999999999999998888889999999999999999999987788999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC--CCCccceeEEEeecCCCCcchHHHHHhh----cc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~----~~ 496 (722)
+++++.+ ..++..+++.|+++++|+++++|++++.|++..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 568899999999999999999999999998764332 2578999999999999999998888776 32
Q ss_pred --CCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
.++++|.||+||++++++...........++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCC----
Confidence 37899999999999876666555545678999999999999999 89999999996 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|..++ +|.|||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 474 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPD 474 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC
T ss_pred --ChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 6678888886443 47789999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCC--CCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 649 AGGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~--~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+..| +.++|||+++++ ...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++...++..+++
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 548 (549)
T 3g7s_A 475 EEAG-EVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHHH 548 (549)
T ss_dssp -------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------------
T ss_pred cccC-ceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccccC
Confidence 8887 899999999876 45778999999999999999995 56999999999999999999999887765543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-81 Score=714.84 Aligned_cols=465 Identities=18% Similarity=0.170 Sum_probs=386.9
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++|||+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 4578999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
||.+|.+++.+++++++++++++++......... .... +... ..
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~------------------~~~~----~~-- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCVP------------------VRHL----PA-- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEEE------------------GGGC----CC--
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------ceee------------------eccC----Cc--
Confidence 9999999999999999999999765321100000 0000 0000 00
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.+++++++.+|++|+.+++++|.+|++|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 01111223346799999999999999999999999999887765 56788999999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
++++.+. ..++..+.++|+++++|+++++|++++.|.+.. ..++++||.+++|||+++++..+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 9999753 457889999999999999999999999998753 345789999999999999988888877778899999
Q ss_pred cccccccccccccCCc---CCcCccccccccCCCceEEEECCCCCc-CCCCCCccceEEE-----ecccCCCcccccccc
Q 004952 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (722)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|++ |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999876543222 223445789999999999999999988 789985 99998 355655 677
Q ss_pred ccccceeccccCCCc--eecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~--r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
.|+++|..+|+ +|. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCc
Confidence 89999998884 344 89999999999999999999999999999999999999999995 999999999999987743
Q ss_pred CceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
..++++++... ++++++|+++||.||+|. ++++++||+|+||||||++|++.+.+.
T Consensus 458 --~~lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 458 --KQLLCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp --EEEEEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred --eEEEEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 45666666432 234567788999999995 569999999999999999999887554
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-80 Score=704.11 Aligned_cols=517 Identities=18% Similarity=0.199 Sum_probs=406.0
Q ss_pred CCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004952 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (722)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s 243 (722)
..|.....+|...+++++++ +++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+++|+
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~~---g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDDY---GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEESS---SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTC
T ss_pred CCCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcCC---CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 45777777888877777755 689999999986531 3346899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---CcEEEEcCCCCC
Q 004952 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGND 320 (722)
Q Consensus 244 ~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 320 (722)
+++++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. ..+.........+ ...+.+...
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 194 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD--- 194 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS---
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc---
Confidence 999999999999999999999999999999999999999999987421 0012222222222 233333211
Q ss_pred CCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEE
Q 004952 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (722)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~ 400 (722)
...+..++.+.+....... ..........++|++||+|||||||.||||+++|.+++..+......+++.+++++
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (580)
T 3etc_A 195 ----VLEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269 (580)
T ss_dssp ----CCTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEE
T ss_pred ----cccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceE
Confidence 1123455666655443210 00111134578999999999999999999999999998887776667889999999
Q ss_pred EEecCccccchhHH-HHHHhhcCCEEEEec-CCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEe
Q 004952 401 CWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (722)
Q Consensus 401 l~~~~~~~~~~~~~-~~~~L~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (722)
++.++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~ 348 (580)
T 3etc_A 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVV 348 (580)
T ss_dssp EECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEE
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEE
Confidence 99999999999865 788999999999985 4568889999999999999999999999998863 35567899999999
Q ss_pred ecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 479 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|
T Consensus 349 gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v 424 (580)
T 3etc_A 349 AGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVI 424 (580)
T ss_dssp CSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEE
T ss_pred ccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999999888765 689999999999987554433 334567899999999999999999999999996 99999
Q ss_pred e------cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 559 F------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 559 ~------~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
. ++.+. .|+.+++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.
T Consensus 425 ~~~~g~~~~~~~--gY~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~ 495 (580)
T 3etc_A 425 NTMEGKPVGLFV--HYGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI 495 (580)
T ss_dssp ECTTCCCTTCCC--EETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT
T ss_pred ecCCCCCCeeec--cccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence 5 22222 233466788888852 39999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L 708 (722)
+||+|.+|+|++.+++..| +.++|+|++.++...+ .++|+++++++||.||+|+ ++++++||+|+||||+|++|
T Consensus 496 -~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~L 573 (580)
T 3etc_A 496 -QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEI 573 (580)
T ss_dssp -TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------
T ss_pred -hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHH
Confidence 9999999999999999888 8999999998875544 3689999999999999996 55899999999999999999
Q ss_pred HHHHhh
Q 004952 709 RDQIKH 714 (722)
Q Consensus 709 ~~~~~~ 714 (722)
++++++
T Consensus 574 r~~~~~ 579 (580)
T 3etc_A 574 RDKDQS 579 (580)
T ss_dssp ------
T ss_pred HhHhhc
Confidence 998765
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-80 Score=700.09 Aligned_cols=488 Identities=20% Similarity=0.245 Sum_probs=411.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 34789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... +.............+.+... ..+...+.++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987542 22222222222233333211 1233445565543321
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCCCCCCEEEEecCccccchh-HHHHHH
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (722)
..+.....+++++||+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|++++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765433 4568899999999999999998 557889
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 46788999999999999999999999999988766677899999999999999999999999988889
Q ss_pred cccccccccccccccccCC----cCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
+++|.||+||++.+++... .......+++|+|+++++++|+| ++|+++|.|++ |||+|. .||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544332 12234567899999999999999 67999999996 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|.. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 399 --~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --ChhHHHhhccC------CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeec
Confidence 56678877753 349999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+..| +.++|||+..++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTE-EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCC-ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8887 89999999988877888999999999999999995 66999999999999999999987753
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-79 Score=687.45 Aligned_cols=484 Identities=21% Similarity=0.209 Sum_probs=405.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888888753221 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++.... +....+.......+..+... ....+.+......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---- 144 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS---- 144 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC----
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCC----
Confidence 999999999999999999999997543 22222222222222222111 1112222222111
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|+.++ ..++.+++.|+
T Consensus 145 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 145 -EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp -SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred -CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1122335568999999999999999999999999999999888888999999999999999999997 44778999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 568888999987 899999999999999988766667789999999999999999998888765 5789999
Q ss_pred ccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||+++.++ .........+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987543 3333445567899999999999999 88999999995 999993 45555 6678888
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++
T Consensus 371 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDD------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTT------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCC------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 88643 39999999999999999999999999999999999999999995 9999999999999998887 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++|+.+++...+.++++++|+++||.||+|. ++++++||+|+||||||++|++++++..
T Consensus 443 a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 443 AVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 9999998888888999999999999999995 5599999999999999999999987654
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-79 Score=693.88 Aligned_cols=489 Identities=19% Similarity=0.213 Sum_probs=405.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 35 a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCC
Confidence 468899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
|.++.+++.+++++++++++|+++.... ....+....+....+. ..+++.... ..+.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-- 172 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-- 172 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC--
T ss_pred CCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc--
Confidence 9999999999999999999999874310 0000112222222222 112221110 012222211111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~ 421 (722)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .++.+|+.
T Consensus 173 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 173 ---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp ---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 1112345679999999999999999999999999999988888888999999999999999999885 58999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++++
T Consensus 250 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 99999987 46788999999999999999999999999876544556789999999999999999988888766 68999
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCc-eEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
|.||+||+++.+...........+++|+|+++. +++|+|++|+++|.|+. |||+|. .||++ +++.|
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t 399 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHN 399 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHH
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhhh
Confidence 999999976543322211123456899999764 79999999999999995 999993 45555 66678
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.
T Consensus 400 ~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~ 471 (539)
T 1mdb_A 400 AASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ER 471 (539)
T ss_dssp HHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhccCC------CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ce
Confidence 8888643 39999999999999999999999999999999999999999995 9999999999999998877 89
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
++|||++++ ...+.++|+++|+++ ||.||+|. ++++++||+|+||||||++|++++.++++.
T Consensus 472 ~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 472 SCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp EEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 999999874 456778999999998 99999995 558999999999999999999999888764
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-79 Score=690.26 Aligned_cols=482 Identities=21% Similarity=0.210 Sum_probs=403.2
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.. .++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986542 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+|.++.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 222222221111 011010 01123343333221
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
..+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 123345578999999999999999999999999999999888888999999999999999999999876677779
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999987 4688999999999999999999999999988654445568999999999999999999888775 68999
Q ss_pred ccccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
|.||+||+++..+..... .....+++|+|+++++++|+|++|+++|.| . |||+|. .||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998755443332 234567899999999999999999999988 3 999993 45554 66788
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.
T Consensus 384 ~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~ 454 (517)
T 3r44_A 384 RDAFDN-------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EI 454 (517)
T ss_dssp HHTEET-------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred HhhhcC-------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ce
Confidence 888842 39999999999999999999999999999999999999999995 9999999999999998877 88
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++++| ..++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++.+.+.+.
T Consensus 455 ~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 88888 555566788999999999999999995 55999999999999999999999987754
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-78 Score=692.99 Aligned_cols=484 Identities=18% Similarity=0.215 Sum_probs=403.0
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~ 268 (722)
||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++|||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCC
Q 004952 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (722)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (722)
.+++.++++++++++++++...... ........+....+. ..+.+... .....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALF-SGDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEeccccccc-ccHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----c
Confidence 9999999999999999998753210 000111222222222 22222111 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh--HHHHHHhhcCCEE
Q 004952 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (722)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~l 425 (722)
.......++++|||+|||||||.||||+++|+++++.+.+....+++.+++++++.+|++|.++. +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22334567999999999999999999999999999999988888999999999999997776665 4699999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++.+ ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9987 36778899999999999999999999999875322 233689999999999999999999888765 6899999
Q ss_pred ccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (722)
||+||+++.++...........++|+|+ ++++++|+|++++++|.|++ |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998755443332223346899998 78899999999999999996 99998 355655 6678899
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
+|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 477 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSC 477 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEE
Confidence 997544 9999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
+|++..+ ..+.+++++++++ .||.||+|. ++++++||+|+||||||++|++++....
T Consensus 478 a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 478 AYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 9999876 4667899999998 699999994 6699999999999999999999876653
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-78 Score=680.00 Aligned_cols=481 Identities=20% Similarity=0.213 Sum_probs=410.7
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 3478999999998777 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
++|.++.+++.+++++++++++|+++.... . ... .......+.++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~-------~~~----------------~~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSI-----D-------AVG----------------QQIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCT-----T-------CCC----------------CSSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccc-----h-------hcc----------------cccceecHhhhhccccC-
Confidence 999999999999999999999999753210 0 000 00112334454443221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345679999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
+++++.+.. .++..+++.|+++++|++.++|++++.++.........++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998642 467889999999999999999999999998876666778999999999999999999999999888999
Q ss_pred cccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccc
Q 004952 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLN 571 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~ 571 (722)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 361 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------E 361 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------C
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------C
Confidence 9999999998765433221 12345679999999999999999999999996 999993 45554 6
Q ss_pred ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 572 ~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
++.|++.|... +|.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 362 ~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 362 PELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp HHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSS
T ss_pred cccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCC
Confidence 67888888653 36679999999999 69999999999999999999999999999995 999999999999998877
Q ss_pred CceEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 652 GPEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
+ +.++|+|+++++...+ .++++++|+++||.||+|. ++++++||+|+||||||++|++.+..+-...
T Consensus 437 ~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 508 (511)
T 3e7w_A 437 V-EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHH 508 (511)
T ss_dssp C-CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC
T ss_pred c-eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccc
Confidence 7 8999999998765444 2678999999999999995 5599999999999999999999988765443
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-78 Score=686.73 Aligned_cols=467 Identities=19% Similarity=0.196 Sum_probs=392.5
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 3468999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+|.++.+++.+++++++++++|+++.... ...... .....+... . + ....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~--~----~~~~- 171 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEED-----------T--I----KIRE- 171 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCCS-----------T--T----TTSC-
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecch-----------h--h----cccc-
Confidence 99999999999999999999999875321 111111 111111100 0 0 0000
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+++.++.+|+.
T Consensus 172 ----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 172 ----GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp ----CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred ----CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 0011123467899999999999999999999999999988888788999999999999999999999999999999
Q ss_pred CCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++|||++++++.+++.+. ++
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~ 318 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VT 318 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SE
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---Ce
Confidence 9999998642 4778899999999999999999999877432 36899999999999999998888653 68
Q ss_pred ccccccccccccccccCCcC--CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccc
Q 004952 500 IIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNA 572 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~ 572 (722)
++|.||+||++++++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ ++
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p 390 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RP 390 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cc
Confidence 99999999998655433221 22345689999999999999999999999995 999993 34554 67
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
+.|++.|..+|+.+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 391 e~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 469 (563)
T 1amu_A 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ 469 (563)
T ss_dssp HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC
T ss_pred hhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC
Confidence 789999998888888899999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
+.++|||++.. ..+.++|+++++++||.||+|. ++++++||+|+||||||++|++..
T Consensus 470 -~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 470 -PYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -EEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred -eEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 89999999864 4567899999999999999995 558999999999999999998754
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=682.55 Aligned_cols=483 Identities=19% Similarity=0.229 Sum_probs=402.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++...... ..+.. ++. ...+.+.......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCccccc------------ccccc--eec-------------hhhhhhhcccccc---
Confidence 99999999999999999999998532100 00000 000 0012222211111
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334568999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998742 47789999999999999999999999998877666778899999999999999999999999988899999
Q ss_pred cccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccc
Q 004952 503 SCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNAD 573 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~ 573 (722)
.||+||++++++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 99999998765433221 12245689999999999999999999999995 999993 45554 667
Q ss_pred ccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
.|++.|... +|++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..+
T Consensus 365 ~t~~~f~~~---~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTMI---DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEEE---TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhccccC---CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 888888532 36779999999999 89999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCCH----HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 654 EVLVIFVVLKKGFTSQP----DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~----~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+.++|+|++.++...+. ++++++|+++||.||+|. ++++++||+|+||||||++|++.+.++-+.++
T Consensus 439 ~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 88999999987543332 578999999999999995 55899999999999999999999988765544
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-77 Score=672.23 Aligned_cols=473 Identities=20% Similarity=0.190 Sum_probs=391.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+|
T Consensus 12 a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp HHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 4689999999986211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEe--ccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+ +.... ..+....+... ++ .++++.......
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~----------------~~~~~~~~~~~~ 139 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSGSGAR-II----------------FLGDLVRDGEPY 139 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHCCCCE-EE----------------EGGGTEETTEEC
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhccccce-eE----------------EecchhhcCccc
Confidence 9999999999999999999999 54321 11101111111 11 122222211000
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCC--CCCCEEEEecCccccchh-HHHHHHh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
......+.....+++++||+|||||||.||||+++|+++.+.+.+....+++ ++++++++..|++|+.++ ..++.+|
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000111134467999999999999999999999999999988887777888 889999999999999998 6688999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcC-C-CCCCCccceeEEEeecCCCCcchHHHHHhhccC
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~-~-~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~ 497 (722)
+.|+++++.+ ..++..+++.|+++++|+++++|++++.|.+.. . ....++++||.+++|||++++++.+++.+.+ +
T Consensus 220 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~ 297 (504)
T 1t5h_X 220 ALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-P 297 (504)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-C
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-C
Confidence 9999999987 468889999999999999999999999998764 2 2445689999999999999999999998876 4
Q ss_pred CcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCC---CcCCCCCCccceEEEe------cccCCCccc
Q 004952 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGASDR 568 (722)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~~p~G~~giGel~v~------~~y~~~~~~ 568 (722)
++++|.||+||+++++.. . ....+++|+|.++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 298 ~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~---- 367 (504)
T 1t5h_X 298 GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN---- 367 (504)
T ss_dssp SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT----
T ss_pred cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC----
Confidence 789999999999433221 1 23457899999999999999888 99999995 999996 24444
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|.. | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 368 --~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 437 (504)
T 1t5h_X 368 --QPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLAD 437 (504)
T ss_dssp --CHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEC
T ss_pred --CchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 66778888842 3 9999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
+..| +.++|||+++++...+.+++++++++ +||.||+|+ ++++++||+|+||||||++|+++++
T Consensus 438 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 438 QRWG-QSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSSS-EEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CCCC-cEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888 89999999988777788999999998 999999995 5589999999999999999999864
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-77 Score=679.33 Aligned_cols=490 Identities=18% Similarity=0.162 Sum_probs=408.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++ |++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999974211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+++... +.+..+....+ ..++.+.... ...+...|.++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCcc-
Confidence 999999999999999999999987532 22222222232 2222222110 00122346666554321
Q ss_pred CCCCCCCCccC------CCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---cCCCCCCEEEEecCccccchhH
Q 004952 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (722)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~ 413 (722)
. ..+.... .+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 0 0111111 23899999999999999999999999999888777665 6889999999999999999986
Q ss_pred H-HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 414 ~-~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
. ++.++ .|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55667 999999987 46889999999999999999999999999987655556789999999999999999999999
Q ss_pred hhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCc
Q 004952 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (722)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~ 566 (722)
+.+++++++|.||+||++.+++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~-- 405 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN-- 405 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT--
T ss_pred HHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC--
Confidence 8887889999999999987654432 2234567999999999999999 78999999995 999993 35554
Q ss_pred cccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEee
Q 004952 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (722)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~ 646 (722)
+++.|++.|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.
T Consensus 406 ----~~~~t~~~f~~------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 406 ----NPEATKELIDE------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGV 474 (548)
T ss_dssp ----CHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred ----ChHHhhhcccC------CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEE
Confidence 56678777753 239999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC--eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL--FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~--~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
+++..| +.++|||+++++...+.++|+++|+++|+.|++|. ++++++||+|+|||++|++|++++.+.++
T Consensus 475 ~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 475 PDPVAG-ELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EETTTE-EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EcCCCC-eeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 998887 89999999988777788999999999999999997 55899999999999999999999987765
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-79 Score=694.61 Aligned_cols=471 Identities=20% Similarity=0.231 Sum_probs=310.4
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 3478999999999777 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|+++...... .....++.... ....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~----------------~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVEDE----------------AASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeecc----------------cccc-----
Confidence 9999999999999999999999987532111 11111110000 0000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
...........+++++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 01111223456899999999999999999999999999877655 45678899999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
++++.+. ..++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+++++..+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4578899999999999999999999999987643 34789999999999999999888888888899999
Q ss_pred cccccccccccccCCc---CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccc
Q 004952 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~ 574 (722)
.||+||++++.+.... .......++|+|+++++++|+|++++++|.|+. |||+| +.||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchh
Confidence 9999999865443222 122344679999999999999999999999995 99999 345554 6678
Q ss_pred cccceecccc--CCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 575 EEVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 575 t~~~f~~~p~--~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
|++.|..+|+ .++.+||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 508 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD 508 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC
Confidence 9999988876 356789999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred ceEEEEEEEecCC-CCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHH
Q 004952 653 PEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 653 ~~~l~a~vv~~~~-~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
+.++|||+++++ ...+.++|+++|+++||.||+| .++++++||+|+||||||++|++.
T Consensus 509 -~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 509 -KQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -------------------------------------------------------------
T ss_pred -eEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 899999998753 3456789999999999999999 466899999999999999999875
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-78 Score=730.23 Aligned_cols=555 Identities=19% Similarity=0.201 Sum_probs=327.2
Q ss_pred HHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEecCC
Q 004952 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR 201 (722)
Q Consensus 122 ~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~ 201 (722)
++.+..||++|+.++..+++.+...+..+.....-... ..........+.. ..+.+ +++++||++|+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~~--~a~~~pd~~Al~~~~~~ 86 (979)
T 3tsy_A 14 LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIFQ--NISEFATKPCLINGPTG 86 (979)
T ss_dssp -------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHTT--TGGGTTTSEEEEETTTC
T ss_pred cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHHH--HHHhCCCCeEEEECCCC
Confidence 99999999999999999988775544443322211110 0000001111222 22322 45789999999986321
Q ss_pred CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcC
Q 004952 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280 (722)
Q Consensus 202 ~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~ 280 (722)
+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++
T Consensus 87 ------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 160 (979)
T 3tsy_A 87 ------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160 (979)
T ss_dssp ------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHT
T ss_pred ------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcC
Confidence 3899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEE
Q 004952 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360 (722)
Q Consensus 281 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 360 (722)
++++|+++... +....+.......++.+... .......+...+.++...... .....+.....+++++|
T Consensus 161 ~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 161 TKLIITEARYV------DKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVA 229 (979)
T ss_dssp EEEEEECSTTT------TTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEE
T ss_pred CeEEEEChHHH------HHHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEE
Confidence 99999997543 22233333222333333211 111122233445554433221 01122334567899999
Q ss_pred EEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecCCCChh
Q 004952 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLER 435 (722)
Q Consensus 361 il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~ 435 (722)
|+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|+.++ ..++.+|..|+++++.+ ..++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHH
Confidence 999999999999999999999887765533 4568899999999999999998 45788999999999987 46788
Q ss_pred hHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccccccccccccc
Q 004952 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 515 (722)
Q Consensus 436 ~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 515 (722)
.+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+||++.+++.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 388 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEE
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHh
Confidence 99999999999999999999999998876667789999999999999999999999998888999999999999865443
Q ss_pred CC----cCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccC
Q 004952 516 GS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMY 585 (722)
Q Consensus 516 ~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~ 585 (722)
.. ...+...+++|+|+++++++|+| ++|+++|.|++ |||+|. .||++ +++.|++.|..+
T Consensus 389 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~~f~~~--- 457 (979)
T 3tsy_A 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAETIDKD--- 457 (979)
T ss_dssp CGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHHHBCTT---
T ss_pred CCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------ChhhhhhhccCC---
Confidence 32 12234567899999999999999 56999999996 999993 45555 667888888543
Q ss_pred CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCC
Q 004952 586 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665 (722)
Q Consensus 586 ~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~ 665 (722)
+||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++|||+..++
T Consensus 458 ---g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~ 532 (979)
T 3tsy_A 458 ---GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKD 532 (979)
T ss_dssp ---SCEEEEEEEEECTTSCEEEEEESCC----------------------------------------------------
T ss_pred ---CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCC
Confidence 39999999999999999999999999999999999999999995 9999999999999988777 899999998877
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 666 FTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 666 ~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
...+.++|+++|+++||.||+| .++++++||+|+||||||++|++++.+.++
T Consensus 533 ~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 533 SELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 6777789999999999999999 566999999999999999999999876543
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-77 Score=674.67 Aligned_cols=515 Identities=22% Similarity=0.262 Sum_probs=414.1
Q ss_pred CCCCcCCCCccchhhhcccCcc---cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEE
Q 004952 163 HGGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIA 237 (722)
Q Consensus 163 ~~~~w~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~ 237 (722)
.+..|+.+...|....++.+++ +++++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+
T Consensus 27 ~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~ 103 (570)
T 3c5e_A 27 QWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVA 103 (570)
T ss_dssp CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEE
T ss_pred ccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEE
Confidence 3456776666676666665543 23449999999985421 1234899999999999999999986 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEc
Q 004952 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLP 315 (722)
Q Consensus 238 l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 315 (722)
|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++.
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~ 177 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVS 177 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEES
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEec
Confidence 999999999999999999999999999999999999999999999999987432 222222333332 223332
Q ss_pred CCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHH-HHHHhhhhcCC
Q 004952 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDL 394 (722)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~ 394 (722)
... ..+...+.+++..... ..+.....+++++||+|||||||.||||+++|+.+.+ ...+. ..+++
T Consensus 178 ~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 178 EKS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SSC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSC
T ss_pred ccC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCC
Confidence 110 1123356666544322 1122345679999999999999999999999994332 44444 66889
Q ss_pred CCCCEEEEecCccccchhH-HHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccc
Q 004952 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (722)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (722)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999985 68899999999999874 568889999999999999999999999998863 34456899
Q ss_pred eeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCc
Q 004952 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (722)
Q Consensus 473 Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (722)
||.+++|||++++++.+++.+.+ +++++|.||+||++++++... ......+++|+|+++++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999999888766 688999999999986544332 223456799999999999999999999999995
Q ss_pred cceEEEe------cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHH
Q 004952 553 VGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (722)
Q Consensus 553 iGel~v~------~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (722)
|||+|. ++.+. .|+.+++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|
T Consensus 401 -GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~e 470 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFS--GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE 470 (570)
T ss_dssp -EEEEEECSSBCCTTCCC--EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred -CeeEEeccCCCCchhhc--cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHH
Confidence 999995 21111 123356778888852 39999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC--CC---CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCC
Q 004952 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--TS---QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTAS 700 (722)
Q Consensus 627 IE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~--~~---~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~ 700 (722)
||++|. +||+|.+|+|++.+++..| +.++|||++.++. .. ..++|+++|+++||.||+|. ++++++||+|+|
T Consensus 471 IE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 548 (570)
T 3c5e_A 471 VENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVT 548 (570)
T ss_dssp HHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTT
T ss_pred HHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCC
Confidence 999995 9999999999999998777 8999999987653 11 14689999999999999995 558999999999
Q ss_pred chhhHHHHHHHHhhh
Q 004952 701 NKLLRRVLRDQIKHE 715 (722)
Q Consensus 701 GKvdR~~L~~~~~~~ 715 (722)
|||||++|++.+...
T Consensus 549 GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 549 GKIQRAKLRDKEWKM 563 (570)
T ss_dssp CCBCHHHHHHHHTC-
T ss_pred cCCcHHHHHHHHHhh
Confidence 999999999987653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=686.79 Aligned_cols=491 Identities=19% Similarity=0.203 Sum_probs=315.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 3478999999998877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+|.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222221111 011234444433221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~ 420 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|.+++. .++.+|+
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11122345689999999999999999999999999999999888889999999999999988877764 6899999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46788999999999999999999999999887655556688999999999999999998888776 6899
Q ss_pred cccccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccc
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (722)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+|. .||++ +++.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 407 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPEH 407 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHHH
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chhh
Confidence 9999999998654443333333457899996 89999999999999999995 999993 35554 6678
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +
T Consensus 408 t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~ 479 (544)
T 3o83_A 408 NSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-E 479 (544)
T ss_dssp HHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred hhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-c
Confidence 88888543 39999999999999999999999999999999999999999995 9999999999999998888 8
Q ss_pred EEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 655 VLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
.++|||+.++ ...+.+++++++++ +||.||+|. ++++++||+|+||||||++|+++++..
T Consensus 480 ~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 480 KSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ---------------------------------------------------------------
T ss_pred eEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 9999999876 34556789999999 799999994 669999999999999999999988753
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-78 Score=678.11 Aligned_cols=483 Identities=16% Similarity=0.152 Sum_probs=392.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 14 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~ 85 (521)
T 3l8c_A 14 AQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVD 85 (521)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecC
Confidence 468999999998877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|+++......... ....+.++...... .
T Consensus 86 ~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~--~ 133 (521)
T 3l8c_A 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA--E 133 (521)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--T
T ss_pred ccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--c
Confidence 999999999999999999999987532111000 01112222111000 0
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh--cCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
..........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..+++|+.+.+.++.+++.|
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 01112234567999999999999999999999999999887776555 7788999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999998743 377889999999999999999999999988766666778999999999999999999999998888999
Q ss_pred cccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccc
Q 004952 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLN 571 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~ 571 (722)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 365 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------N 365 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------C
T ss_pred EeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------C
Confidence 9999999998755433221 12244689999999999999999999999996 999993 35554 6
Q ss_pred ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 572 ~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...
T Consensus 366 ~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 366 PEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp HHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSC
T ss_pred chHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCC
Confidence 67888888643 35679999999999999999999999999999999999999999995 999999999999876544
Q ss_pred CceEEEEEEEecCCCCCC-------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 652 GPEVLVIFVVLKKGFTSQ-------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~-------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+.+.++|||+++++...+ .++|+++|+++||.||+|. ++++++||+|+||||||++|++.+.++.++..
T Consensus 442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 337899999998764321 4678999999999999995 55999999999999999999999988766654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-78 Score=682.45 Aligned_cols=488 Identities=22% Similarity=0.242 Sum_probs=365.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 368999999996321 1224899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc--EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+++... +....+....+.. ++++.... ..+...+.+++.....
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC-
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC-
Confidence 999999999999999999999987532 2222333333221 22221110 0123346665443221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh--hhhcCCCCCCEEEEecCccccchhHHHHHHhh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (722)
.....+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++..++.+++
T Consensus 170 -------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (541)
T 1v25_A 170 -------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL 242 (541)
T ss_dssp -------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred -------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHh
Confidence 123467899999999999999999999999998776653 34577899999999999999999877889999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ ..+ ++++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999998755688999999999999999999999999987644344568999999999999999998888 444 7899
Q ss_pred cccccccccccccccCCcCC----------cCccccccccCCCceEEEECCCCCcCCC-C-CCccceEEEe-----cccC
Q 004952 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPD-D-QPCVGEVGLF-----PLYL 563 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~-G-~~giGel~v~-----~~y~ 563 (722)
+|.||+||++.+++...... ....+++|+|+++++++|+|++|+++|. | + +|||+|. .||+
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSCB
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhcccc
Confidence 99999999987655443221 0234789999999999999999999985 3 4 5999993 4555
Q ss_pred CCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEE
Q 004952 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (722)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~v 643 (722)
+ +++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|
T Consensus 399 ~------~p~~t~~~f~~~------g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 465 (541)
T 1v25_A 399 G------NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAV 465 (541)
T ss_dssp T------CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CE
T ss_pred C------ChhhhhhhccCC------CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEE
Confidence 4 667788888642 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++.+++..+ +.++|||+++ +...+.+++++++++ +||.||+|. ++++++||+|+||||||++|++.+.+.++
T Consensus 466 v~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 466 VAIPHPKWQ-ERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EEEECSSSS-EEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred EEecCCCcC-ceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 999998887 8999999987 444566889999999 899999995 55899999999999999999999876654
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-78 Score=678.12 Aligned_cols=483 Identities=16% Similarity=0.133 Sum_probs=306.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... +.........+....++.... ....+.++.....
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--- 148 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLAS--- 148 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCC---
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccC---
Confidence 9999999999999999999999987532 111122222222211211111 1112222222111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|+
T Consensus 149 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 149 -DTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp -CSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred -CCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 1112234567899999999999999999999999999999998888999999999999999999999988878777777
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678899999999999999999999999998875 44568899999999987 777778888888999999
Q ss_pred ccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~ 578 (722)
||+||++++++..... ....++|+|+++++++|+|++++++|.|+. |||+|. .||++ +++.|++.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~ 371 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHA 371 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHH
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHH
Confidence 9999998765443322 223459999999999999999999999995 999993 45554 56678878
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeec--CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~--dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
|. .+||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.+
T Consensus 372 f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~ 442 (509)
T 3ivr_A 372 FR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAI 442 (509)
T ss_dssp TG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred hh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEE
Confidence 75 239999999999999999999999 999999999999999999995 9999999999999998877 899
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
+++|++.++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++++.+...++
T Consensus 443 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 443 KAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 99999988777778899999999999999994 6699999999999999999999988876554
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-78 Score=684.79 Aligned_cols=497 Identities=16% Similarity=0.175 Sum_probs=308.8
Q ss_pred CCCCCCceEEE---EecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEE
Q 004952 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (722)
Q Consensus 186 a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~v 261 (722)
++++||++|++ +... .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 36788888865 3221 13899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 262 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|++|.++.+++.+++++++++++|+++... +.........+. .++++.... ...+..++.++....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 171 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT------DYQGFQSMYTFVTSH 171 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS------CBTTBCBHHHHHHHH
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc------cccCcccHHHHhhcc
Confidence 999999999999999999999999997532 222333333332 222222111 112344566665443
Q ss_pred CCCCC--CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---cCCCCCCEEEEecCccccchhHH
Q 004952 340 DYHPR--PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI 414 (722)
Q Consensus 340 ~~~~~--~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~ 414 (722)
..... ....+.....+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~ 251 (550)
T 3rix_A 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251 (550)
T ss_dssp CCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH
Confidence 22100 01111222346889999999999999999999999998887766554 57889999999999999999998
Q ss_pred HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++.+|+.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.
T Consensus 252 ~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 330 (550)
T 3rix_A 252 TLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKR 330 (550)
T ss_dssp HHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHH
Confidence 999999999999986 4688899999999999999999999999998876667788999999999999999999999888
Q ss_pred ccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 331 ~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 403 (550)
T 3rix_A 331 FHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN---- 403 (550)
T ss_dssp TTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred cCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcC----
Confidence 765569999999999976554433 335568999999999999999 57999999995 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 404 --~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~ 474 (550)
T 3rix_A 404 --NPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPD 474 (550)
T ss_dssp --CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred --ChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 566777777532 39999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+..| +.+++||+++++...+.++++++++++|+.+ ++|. ++++++||+|+||||||++|++++.+..+.
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 475 DDAG-ELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCC-ceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 8887 8999999998877777789999999999987 4553 669999999999999999999998776544
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-75 Score=660.10 Aligned_cols=491 Identities=23% Similarity=0.273 Sum_probs=390.1
Q ss_pred cchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004952 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (722)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~l 251 (722)
.|.....+..++ + +||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344444554443 6 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---CcEEEEcCCCCCCCCCCCCC
Q 004952 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (722)
Q Consensus 252 A~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 328 (722)
||+++|++++|++|.++.+++.+++++++++++|+++... +.........+ ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987532 11222222111 22222221100 0001
Q ss_pred CCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHH-HHHHHHhhhhcCCCCCCEEEEecCcc
Q 004952 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (722)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (722)
...++++...... ........+++++||+|||||||.||||+++|+++ .+........+++.++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999999 66666666668899999999999999
Q ss_pred ccchhH-HHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcc
Q 004952 408 WVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (722)
Q Consensus 408 ~~~~~~-~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~ 486 (722)
|+.++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..|+...........+||.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 999985 4678999999999986567889999999999999999999999999876543332124899999999999999
Q ss_pred hHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cc
Q 004952 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PL 561 (722)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~ 561 (722)
+.+++.+.+ +++++|.||+||++.+++..... ....+++|+|+++++++|+|++|+++|.|+. |||+|. .|
T Consensus 316 ~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g 391 (529)
T 2v7b_A 316 IGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM 391 (529)
T ss_dssp HHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC
T ss_pred HHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc
Confidence 999888766 68999999999997554443322 2456789999999999999999999999995 999993 34
Q ss_pred cCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCccee
Q 004952 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (722)
Q Consensus 562 y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~ 641 (722)
|++ +++.|++.|.. +||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|
T Consensus 392 Y~~------~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~ 457 (529)
T 2v7b_A 392 YWN------NREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEA 457 (529)
T ss_dssp BTT------CHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEE
T ss_pred cCC------ChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceE
Confidence 444 56678888852 39999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 642 ~vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+|++. ++..+ +.++|+|++.++...+ .++|+++|+++||.||+|. ++++++||+|+|||++|++|++
T Consensus 458 ~vv~~-~~~~~-~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 458 AVVGV-DHGGL-VKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEE-EETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEe-cCCCc-eEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999 55555 8899999988754322 3679999999999999995 5589999999999999999985
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-76 Score=658.68 Aligned_cols=457 Identities=19% Similarity=0.205 Sum_probs=365.5
Q ss_pred CCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+++++|++++++++|||+++|++++|+|
T Consensus 32 a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~ 99 (505)
T 3nyq_A 32 PTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLN 99 (505)
T ss_dssp CCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcC
Confidence 466776 999999877 9999999999999998775 589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.+|.+++.+++++++++++|++.... .. .... ....+.+... .
T Consensus 100 ~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~~--------------------------~ 143 (505)
T 3nyq_A 100 PKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDVR--------------------------A 143 (505)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCTT--------------------------C
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--cccccccccc--------------------------c
Confidence 999999999999999999999986421 00 0000 0011111000 0
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (722)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 00112234567999999999999999999999999999999988888999999999999999998887 57899999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC---CCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
++++.+ ..++..+++.+ ++++|+++++|+++..|.+.... ....++++|.+++|||++++++.+++...+ ++++
T Consensus 224 ~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~ 300 (505)
T 3nyq_A 224 SVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRV 300 (505)
T ss_dssp EEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCC
T ss_pred EEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCee
Confidence 999986 56778888888 88999999999999999874221 123468899999999999999988887764 6899
Q ss_pred cccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCC---CCCccceEEEe-----cccCCCccccccc
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGLF-----PLYLGASDRLLNA 572 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~---G~~giGel~v~-----~~y~~~~~~~~~~ 572 (722)
+|.||+||+++.++.. .......+++|+|++|++++|+|++|++++. |+. |||+|. .||++ ++
T Consensus 301 ~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~ 371 (505)
T 3nyq_A 301 IERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------RP 371 (505)
T ss_dssp EEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------CH
T ss_pred ecccchhhcccccccC-CCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------Ch
Confidence 9999999998755443 3334556789999999999999999999986 774 999993 45555 66
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeec-CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
+.|++.|..++ ||+|||+|++++||+|+|+||+ |||||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 372 ~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 372 DATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp HHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCCC
Confidence 78888886543 9999999999999999999997 699999999999999999995 999999999999999888
Q ss_pred CceEEEEEEEecC-CCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 652 GPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 652 g~~~l~a~vv~~~-~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+ +.++|||++.+ +...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++
T Consensus 445 g-~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 445 G-ERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp E-EEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred C-cEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 7 89999999986 345677899999999999999995 5599999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-74 Score=649.38 Aligned_cols=482 Identities=17% Similarity=0.203 Sum_probs=367.3
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 3478999999998777 999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++............... ............. . .......+............
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD----IEFAGRDITTNGL-L---DNTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------------CC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEcccccccccccccccc----ceeeeeecccccc-c---ccccccccccchhhccccCC
Confidence 99999999999999999999998754322111100000 0000000000000 0 00000000000000000000
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
..........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|++++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00111234567999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+ ..++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4688999999999999999999999999998754332 389999999999999998888763 78999999
Q ss_pred cccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccc
Q 004952 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~ 578 (722)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+ +|||+|. .||++ +++.|+.
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~------~~~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLY------PTDLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSB------STTCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCc------Chhhcch-
Confidence 999998654443322 22355789999999999999976 344 4999993 45554 4555555
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
|. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 42 239999999999999999999999999999999999999999995 9999999999999998887 89999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+++... ..+.++|+++|+++||.||+|. ++++++||+|+||||||++|++...++
T Consensus 443 ~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999754 4678999999999999999995 559999999999999999999987654
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-74 Score=651.35 Aligned_cols=482 Identities=19% Similarity=0.201 Sum_probs=296.7
Q ss_pred CCCCCCceEEEEecCC--CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 186 RRKEDNTVAIVWREDR--CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
++++||++|+++.+.. ......+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++|
T Consensus 30 a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 30 AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 4789999999986521 0112235899999999999999999999 8 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~- 165 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT- 165 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC-
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc-
Confidence 999999999999999999999999864321110 0111111110 11122232222211
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh--------hcCCCCCCEEEEecCccccchhHH
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVI 414 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~~ 414 (722)
........+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++.++++|+.++..
T Consensus 166 ----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 166 ----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp ----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred ----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 11123345788999999999999999999999999887765433 255788999999999999999999
Q ss_pred HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++|||++++++.+++...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 999999999999876433456788999999999999999999887433 3457899999999999999998888764
Q ss_pred ccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
++++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|.|+. |||+|. .||++
T Consensus 318 -~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 390 (562)
T 3ite_A 318 -DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLN---- 390 (562)
T ss_dssp -SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESS----
T ss_pred -CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCC----
Confidence 4789999999999987655544444455678999999999999995 6889999996 999993 45655
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccC-CCcceeEEEeec
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVS 647 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-p~V~~~~vv~~~ 647 (722)
+++.|+..|. +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +| |.|.+++|++.+
T Consensus 391 --~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~ 462 (562)
T 3ite_A 391 --RPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLN 462 (562)
T ss_dssp --CTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred --CccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEec
Confidence 4455554333 36789999999999999999999999999999999999999999996 66 889999999888
Q ss_pred CCCCCceEEEEEEEecCCCCCC-------------HHHHHHHHHHHHHhhcCCC-eeecCCCCCC-CCchhhHHHHHHHH
Q 004952 648 PAGGGPEVLVIFVVLKKGFTSQ-------------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRT-ASNKLLRRVLRDQI 712 (722)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~-------------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t-~~GKvdR~~L~~~~ 712 (722)
++..+ +..+++++...+.... .++|+++|+++||.||+|+ ++++++||+| +|||+||++|++++
T Consensus 463 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~ 541 (562)
T 3ite_A 463 HPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMF 541 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHH
Confidence 87777 5544444443332221 2489999999999999995 5589999998 99999999999998
Q ss_pred hhh
Q 004952 713 KHE 715 (722)
Q Consensus 713 ~~~ 715 (722)
++.
T Consensus 542 ~~~ 544 (562)
T 3ite_A 542 HTL 544 (562)
T ss_dssp ---
T ss_pred hcc
Confidence 754
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=646.40 Aligned_cols=487 Identities=15% Similarity=0.128 Sum_probs=392.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 21 a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 21 ALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp HHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEec
Confidence 478999999998642 1224999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 265 DSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 265 p~~~---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|.++ .+++.++++++++++++++.......... .....+. ....+. .+++....
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~~~ 155 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAIA----------------LESIELNR 155 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEEE----------------GGGCCGGG
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhcccccccceee----------------chhccccc
Confidence 9984 57899999999999999987542110000 0000000 001110 11110000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHH-HHHH
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSS 418 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~ 418 (722)
..........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+++++. ++.+
T Consensus 156 -----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 230 (590)
T 3kxw_A 156 -----SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTP 230 (590)
T ss_dssp -----GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHH
T ss_pred -----cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHH
Confidence 0111223456799999999999999999999999999999999888999999999999999999999976 8899
Q ss_pred hhcCCEEEEecCCC---ChhhHHHHHHHhCCcEEechhHHHHHHHhc---CCCCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 419 L~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.+++.
T Consensus 231 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 310 (590)
T 3kxw_A 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFY 310 (590)
T ss_dssp HHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHH
Confidence 99999999986422 678899999999999999999999998775 233456789999999999999999999888
Q ss_pred hhcc-----CCcccccccccccccccccCCcC--------------------------CcCccccccccCCCceEEEECC
Q 004952 493 SKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILDE 541 (722)
Q Consensus 493 ~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld~ 541 (722)
+.++ +.+++|.||+||++++++..... ......++|+|+++ ++|+|+
T Consensus 311 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~ 388 (590)
T 3kxw_A 311 QAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDP 388 (590)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECT
T ss_pred HHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcC
Confidence 7753 45799999999999765543211 11234689999998 888997
Q ss_pred C-CCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCC--CceecccCceEEEecCCcEEEEeecCC
Q 004952 542 C-GVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRADD 613 (722)
Q Consensus 542 ~-~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~--g~r~yrTGDl~~~~~dG~l~~~GR~dd 613 (722)
+ ++++|.|+. |||+|. .||++ +++.|++.|..++... |.+||+|||+|+++ ||.|+|+||+||
T Consensus 389 ~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd 459 (590)
T 3kxw_A 389 DTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD 459 (590)
T ss_dssp TTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred CCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence 6 999999995 999993 45554 6778888998765432 55699999999999 999999999999
Q ss_pred eeecCceeechHHHHHHHhccCCCcc--eeEEEeecCCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHHh-hcCCC
Q 004952 614 TMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQS-KLNPL 688 (722)
Q Consensus 614 ~ik~~G~ri~~~eIE~~l~~~~p~V~--~~~vv~~~~~~~g~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~-~~~p~ 688 (722)
|||++|+||+|.|||++|+..||+|. +|+|++++++. + +.+++++++.++. ..+.++++++|+++|+. +++|.
T Consensus 460 ~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 460 LIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999944899998 89999998875 4 7899999988753 34567899999999996 77874
Q ss_pred -e-e--ecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 689 -F-K--VVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 689 -~-~--~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
. . .+++||+|+||||||++|++++.+.
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 2 2 4589999999999999999998654
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=506.97 Aligned_cols=387 Identities=16% Similarity=0.133 Sum_probs=297.8
Q ss_pred cCCCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+++++||++|+++.+.. ...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 34789999999987621 1122335999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhc
Q 004952 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (722)
Q Consensus 263 l~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (722)
+++ .++.+++.+++++++++++|++.... +.........+. ...++. ++....
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 169 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV------DDVVQHVARRPGESPPSIIE----------------VDLLDL 169 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH------HHHHHTCC------CCEEEE----------------GGGSCT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH------HHHHHHHhccccccccceeE----------------eccccc
Confidence 999 88899999999999999999997532 111111111110 001110 000000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCC------CCEEEEecCccccch
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMG 411 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~------~d~~l~~~~~~~~~~ 411 (722)
. ...........+++++||+|||||||.||||+++|+++++.+.+....+.+.+ +|++++.+|++|+++
T Consensus 170 ~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 170 D-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp T-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred c-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccH
Confidence 0 01112233456789999999999999999999999999999888878888877 999999999999999
Q ss_pred h-HHHHHHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhc----CCCCCCCccceeEEEeecCCC
Q 004952 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETS 483 (722)
Q Consensus 412 ~-~~~~~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~Lr~i~~~Ge~l 483 (722)
+ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++||.+++|||++
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l 323 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERV 323 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTC
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcC
Confidence 6 5789999999999998643 3778999999999999 88899988887753 233456789999999999999
Q ss_pred CcchHHHHHhhc-----cCCcccccccccccccccccCCcCC------------------------cCccccccccCCCc
Q 004952 484 NVDDDLWLSSKA-----WYNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMTA 534 (722)
Q Consensus 484 ~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~~~ 534 (722)
++++.+++.+.+ ++++++|.||+||++++++...... .....++|+|++ +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~ 402 (480)
T 3t5a_A 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P 402 (480)
T ss_dssp CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S
T ss_pred CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C
Confidence 999999998876 3457999999999997665544321 123468999999 9
Q ss_pred eEEEECCC-CCcCCCCCCccceEEE-----ecccCCCccccccccccccceecccc-----CCCceecccCceEEEecCC
Q 004952 535 GLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTVGG 603 (722)
Q Consensus 535 ~~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----~~g~r~yrTGDl~~~~~dG 603 (722)
+++|+|++ |+++|.|++ |||+| +.||++ +++.|++.|..++. .++.+||||||+|+++ ||
T Consensus 403 ~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG 473 (480)
T 3t5a_A 403 IVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DG 473 (480)
T ss_dssp EEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TT
T ss_pred EEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CC
Confidence 99999976 899999995 99999 345554 67788888864332 2356799999999997 99
Q ss_pred cEEEEee
Q 004952 604 YIIVQGR 610 (722)
Q Consensus 604 ~l~~~GR 610 (722)
+|+|+||
T Consensus 474 ~l~~~GR 480 (480)
T 3t5a_A 474 KMFIIGR 480 (480)
T ss_dssp EEEECC-
T ss_pred EEEEeCC
Confidence 9999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=473.41 Aligned_cols=316 Identities=17% Similarity=0.131 Sum_probs=267.0
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCCh
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~ 434 (722)
.+++|||+|||||||.||||++||+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999988889999999999999999999999999999999999999875433
Q ss_pred hhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccc
Q 004952 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (722)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (722)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34568999999999999999999988764 689999999999987554
Q ss_pred cCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccC
Q 004952 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (722)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTG 594 (722)
... ......+.+|.|.||+.+.+.+ .||+++...+. ..+||+||
T Consensus 190 ~~~-~~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LKA-LNGPEASELYVFLPGIQYGVDE------------RGCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EEE-CSSTTCCSCEEECTTCEEEECT------------TSEEEEESGGG-----------------------TTCCEEEE
T ss_pred ccc-ccccccceeeccCCCeEEEecC------------cCceEEecccc-----------------------cCcceecC
Confidence 432 2334557889999999887633 28888743221 12399999
Q ss_pred ceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh--ccCCCcceeEEE-eecCCCCCceEEEEEEEecCCCCCCHH
Q 004952 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (722)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~--~~~p~V~~~~vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (722)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+|+..| +.++|+|+...+ ....+
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-~~~~~ 310 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-EALTE 310 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-HHHHH
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-CcCHH
Confidence 999999988 7788999999999999999999998763 268999999887 66777777 889999886653 33457
Q ss_pred HHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 672 KLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 672 ~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+|+++|+++||.||+|+ ++++++||+|+||||||++|++.+++.
T Consensus 311 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 311 RLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 89999999999999995 558999999999999999999988764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=443.58 Aligned_cols=328 Identities=18% Similarity=0.150 Sum_probs=265.9
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh---hhcCCCCCCEEEEecCcc-ccchhHHHHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~L~~G~~lv~ 427 (722)
..++++++|++|||||||.||||+++|+++.+...... ..++++++|++++..+++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877654433 367899999999999985 55666678899999999998
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCC--ccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 764 47889999999999999999999999998753322222 58999999999999999999988776 689999999
Q ss_pred ccccccc-cccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|... +++.| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9998432 2221111 1112455778999999994 6999999995 99999641 12233 1
Q ss_pred cCCCceecccCceEEEecC-CcE-----EEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~d-G~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
..||+|||+|++++| |++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 138999999999999 997 899999999999999999999999995 9999999999998876666 8899
Q ss_pred EEEEecC--CC---CCCHHHHHHHHHHHHHhhc-CCCe-eec--CCCCCCCCchhhHHHH
Q 004952 658 IFVVLKK--GF---TSQPDKLKMIFSKAIQSKL-NPLF-KVV--PEFPRTASNKLLRRVL 708 (722)
Q Consensus 658 a~vv~~~--~~---~~~~~~l~~~l~~~l~~~~-~p~~-~~v--~~lP~t~~GKvdR~~L 708 (722)
++|++.+ +. ..+.++++++|+++|++++ +|.. .++ ++||+|+|||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9999875 32 2334789999999999986 7843 355 6999999999999753
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-50 Score=439.47 Aligned_cols=324 Identities=19% Similarity=0.225 Sum_probs=261.6
Q ss_pred cCCC-CCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEE
Q 004952 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (722)
Q Consensus 352 ~~~~-~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (722)
..++ ++++|++|||||||.||||+++|+++.+...+. ...+++.++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334689999999999998755554 56788999999999
Q ss_pred EecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCC--CccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 35788999999999999999999999999876433333 378999999999999999999998876 78999999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
|+||+++.++.... ......|.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 99999643222111 1122367788899999999 78999999995 99999541 11222 1
Q ss_pred cCCCceecccCceEEEecCC------c---EEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~dG------~---l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
..||+|||+|+++++| + ++|+||+||+||++|+||+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1289999999999998 5 6999999999999999999999999995 9999999999999887766 8
Q ss_pred EEEEEEEecCCCCCC----HHHHHHHHHHHHHhh-cCCC-eeecC--CCCCCCCchhhHH
Q 004952 655 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSK-LNPL-FKVVP--EFPRTASNKLLRR 706 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~-~~p~-~~~v~--~lP~t~~GKvdR~ 706 (722)
.++++|+++ +...+ .++++++|+++|+++ ++|. +.+++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 999999998 55444 578999999999999 8885 44777 999999 999985
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=429.07 Aligned_cols=326 Identities=19% Similarity=0.160 Sum_probs=265.3
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh---hhcCCCCCCEEEEecCc-cccchhHHHHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lv~ 427 (722)
..+++++++++|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877654332 35788999999999998 466666678899999999998
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCC--ccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 763 47889999999999999999999999998753322222 47999999999999999999888766 689999999
Q ss_pred ccccccc-cccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|... +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222111 112566778999999995 6999999995 99998641 22233 1
Q ss_pred cCCCceecccCceEEEec-CCcE-----EEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~-dG~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
..||+|||+|++++ ||++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12899999999999 6996 899999999999999999999999995 9999999999998877666 8999
Q ss_pred EEEEecCCCC---CCHHHHHHHHHHHHHhhc-CCC-eeec--CCCCCCCCchhhHHH
Q 004952 658 IFVVLKKGFT---SQPDKLKMIFSKAIQSKL-NPL-FKVV--PEFPRTASNKLLRRV 707 (722)
Q Consensus 658 a~vv~~~~~~---~~~~~l~~~l~~~l~~~~-~p~-~~~v--~~lP~t~~GKvdR~~ 707 (722)
++|+++++.. .+.++++++|+++|++++ +|. +.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999887543 234789999999999996 884 4455 6999999 9999964
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-32 Score=292.61 Aligned_cols=237 Identities=14% Similarity=0.047 Sum_probs=179.3
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCCCEEEEecCc-cccchhHHHHHHhhcCCEEEEe
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lv~~ 428 (722)
.+++++++|+|||||||+||||+++|+++.+.+.+. ...+++.++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998888743 355678999999999999 88888887888899999 4444
Q ss_pred cCCCChh-----------------------hHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCc
Q 004952 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (722)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~ 485 (722)
. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987633223457899999999999999
Q ss_pred chHHHHH-hhccCCcccccccccccccccccCCcCCcCcccccccc------CCCceEEEECC-CCCcCCCCCCccceEE
Q 004952 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 557 (722)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~-~~~~~p~G~~giGel~ 557 (722)
++.+++. +.+++++++|.||+||+++++..... .++|+| +++++++|+|+ +|+++|.|+. |||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEEE
Confidence 9999999 88878999999999999865432211 158899 99999999997 8999999995 9999
Q ss_pred EecccCCCccccccccccccceeccccCCCceecccCceEEEecC---------CcEEEEeecCCeeecCce
Q 004952 558 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (722)
Q Consensus 558 v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~d---------G~l~~~GR~dd~ik~~G~ 620 (722)
|.... +..|.. .|+|||++++.+. ..+..++|.|+++||.|.
T Consensus 318 vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 85421 112211 5999999988543 245678899999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=129.09 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=75.1
Q ss_pred eecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhc
Q 004952 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKL 685 (722)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~ 685 (722)
.|+||+||++|+||+|.|||++|. +||+|.+++|++++++.++ +.++++|+..++...+. +++.+.+++++.+++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 499999999999999999999995 9999999999999998887 89999999988655443 456777888887765
Q ss_pred -CC-Ceeec--CCCCCCCCchhhH
Q 004952 686 -NP-LFKVV--PEFPRTASNKLLR 705 (722)
Q Consensus 686 -~p-~~~~v--~~lP~t~~GKvdR 705 (722)
+| ...++ ++||+| +||++|
T Consensus 79 gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCC
T ss_pred CCccceEEEcCCeecCC-CCCcch
Confidence 34 33344 689998 799977
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=104.83 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=51.1
Q ss_pred cccCceEEEec----CCcEEEEeecCCeeecCceeechHHHHHHHhccC-----C--CcceeEEEeecCCCCCceEEEEE
Q 004952 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 591 yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-----p--~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
||+||++++.. ...|.|+||.+++++++|.+|...+||++|.+.. . .|.|-.+..-..... ..-+.|
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p--~Hyv~~ 489 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIP--GHYVIY 489 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSS--CEEEEE
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCC--CcEEEE
Confidence 99999999974 5789999999999999999999999999985322 2 255655543222212 244555
Q ss_pred EEec
Q 004952 660 VVLK 663 (722)
Q Consensus 660 vv~~ 663 (722)
+..+
T Consensus 490 wEl~ 493 (609)
T 4b2g_A 490 WELL 493 (609)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-07 Score=102.38 Aligned_cols=162 Identities=16% Similarity=0.088 Sum_probs=90.0
Q ss_pred ccceeE--EEeecCCCCcchHHHHHhhccCCccc-ccccccccccccccCCcCCcCccccccccCCCceE-EEE--CCCC
Q 004952 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-VIL--DECG 543 (722)
Q Consensus 470 l~~Lr~--i~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~-~vl--d~~~ 543 (722)
+++|+. ++++|. + ..-...++..+++.+++ ..|+.||+-..+-..+...+... ....+|+... ..+ |+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~--~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEA--TFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTC--CEEECTTSCEEEEEEC----
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCcccc--ceeecCCcEEEEEEeccccc
Confidence 567753 344552 2 22234454445567776 99999997432211111111110 1122333311 222 3221
Q ss_pred ---------CcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceEEEecC----CcEEEEee
Q 004952 544 ---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQGR 610 (722)
Q Consensus 544 ---------~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~d----G~l~~~GR 610 (722)
..|..|+. +|++|+..- |-.-||+||++++..- ..|.|+||
T Consensus 377 ~~~~~~v~l~eve~G~~--YelviTt~~------------------------GL~RYr~GD~v~v~g~~~~~p~~~~~gR 430 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEE--YEVVITNYA------------------------GLYRYRLGDVVKVIGFYNNTPQLKFICR 430 (581)
T ss_dssp ---CCCEEGGGCCTTCE--EEEEEESTT------------------------SCSSEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCceeeHHHcCCCCe--EEEEEeecc------------------------ceeeEEcCCEEEEecccCCCcEEEEEee
Confidence 24556664 788874320 1013999999998642 67999999
Q ss_pred cCCeeecCceeechHHHHHHHhcc-----CC--CcceeEEEeecCCCCCceEEEEEEEec
Q 004952 611 ADDTMNLGGIKTSSVEIERVCDQA-----DE--SILETAAISVSPAGGGPEVLVIFVVLK 663 (722)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~~-----~p--~V~~~~vv~~~~~~~g~~~l~a~vv~~ 663 (722)
.|+++++.|.++...+||.+|.+. .. .|.|..+...... .. ..-+.|+...
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~-~p-~hyv~~wE~~ 488 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVST-DP-GHYAIFWEIS 488 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSS-SS-CEEEEEEEES
T ss_pred cCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCC-CC-CcEEEEEeec
Confidence 999999999999999999998531 22 3666665542222 11 3445555664
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.6e-08 Score=105.11 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=79.2
Q ss_pred ccc---eeEEEeecCCCCcchHHHHHhhccCCccc-ccccccccccccccCCcCCcCccccccc-cCCCc-eEEEEC--C
Q 004952 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMTA-GLVILD--E 541 (722)
Q Consensus 470 l~~---Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~vld--~ 541 (722)
+++ +..++.||- ..-...++..+++.+++ ..|+.||+...+-..+...+. ..+. .+++. =...++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~---~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPE---DVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGG---GCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcc---cCceeecCCcEEEEEEeccc
Confidence 456 555666662 22234455555667776 899999964322111111111 1111 23333 222343 2
Q ss_pred C--CC-----cCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceEEEec----CCcEEEEee
Q 004952 542 C--GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 610 (722)
Q Consensus 542 ~--~~-----~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~----dG~l~~~GR 610 (722)
. .+ .|..|+. +|++|+..- |-.-||+||++++.. ...|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~~------------------------GL~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNFA------------------------GLYRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECSS------------------------SCCSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeecc------------------------ceeeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 12 2335553 777774320 111399999999976 568999999
Q ss_pred cCCeeecCceeechHHHHHHHhc
Q 004952 611 ADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
.+++++++|.++...+||++|.+
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHH
T ss_pred cCCEEEeeeeECCHHHHHHHHHH
Confidence 99999999999999999999963
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.2e-08 Score=107.55 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=92.7
Q ss_pred ChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC----CCcc--CCCcc
Q 004952 19 KLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW--FPSLD 91 (722)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~ 91 (722)
..++..+|.++++++.+. ..+++||++||++ |++.+++.+..+..|+ |+++|++++..... ...+ .+...
T Consensus 380 ~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
T 2jgp_A 380 KPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLAPFMTDE 456 (520)
T ss_dssp CCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEEECSSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeEEeecCC
Confidence 344566777878777777 5556999999999 9999998877667777 88888887643211 1111 11112
Q ss_pred c--cccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCe
Q 004952 92 Q--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK 152 (722)
Q Consensus 92 ~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~ 152 (722)
. ..++||.+.+...++++...+ |+. ++|++++++++.++|.++|+++...|+.+..
T Consensus 457 ~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~ 515 (520)
T 2jgp_A 457 TGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRLG 515 (520)
T ss_dssp SCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBGG
T ss_pred CCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCchh
Confidence 2 567888887766677787788 988 9999999999999999999998766655443
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=97.42 E-value=3e-06 Score=93.60 Aligned_cols=122 Identities=5% Similarity=-0.141 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhh-ccCCChhhhhHHHHHhh---hcCCCCCCCcchhhhhhhhcccccccCCC------------CCcc
Q 004952 23 AEEFDKILKQVISC-SKGLDAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGP------------PLYW 86 (722)
Q Consensus 23 ~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~---~l~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 86 (722)
..+|.++++++.+. ..+++| ++||+. |++ .|++.+.....++ |+++|++++..... ....
T Consensus 311 ~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
T 4hvm_A 311 EPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRGERTLAELGVSI 386 (493)
T ss_dssp SCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC--------------------CEE
T ss_pred CCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccccccccccCCCcee
Confidence 56677777777776 555699 999999 999 8988877777777 89999987543221 1111
Q ss_pred CCCcc----------------cccccc---HHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee
Q 004952 87 FPSLD----------------QSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (722)
Q Consensus 87 ~~~~~----------------~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~ 146 (722)
.+... ..++++ +.+.+...++++...+ |+. ++| +++++++.++|.++|+++...
T Consensus 387 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~~L~~~~~~ 460 (493)
T 4hvm_A 387 ELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDAAMAQAVAD 460 (493)
T ss_dssp EECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHHHHHHHHHC
T ss_pred eeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHHHHHHHHhC
Confidence 11100 123566 7777666777888888 998 999 999999999999999999888
Q ss_pred eecCCeee
Q 004952 147 FREAPKCI 154 (722)
Q Consensus 147 ~~~~~~~~ 154 (722)
|+.+..++
T Consensus 461 p~~~l~~l 468 (493)
T 4hvm_A 461 PSAPLPHS 468 (493)
T ss_dssp TTSBCCC-
T ss_pred CCCccccC
Confidence 87777664
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=97.22 E-value=3.5e-06 Score=91.47 Aligned_cols=129 Identities=6% Similarity=-0.146 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC--CCCccC--CCccc
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--PPLYWF--PSLDQ 92 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 92 (722)
+..++..+|.++++++.+. ..+++||++||+. +++.++..+. ..++ |+++|+++..... ....+. .....
T Consensus 283 ~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~~--~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (436)
T 1l5a_A 283 RLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELKVLASG 357 (436)
T ss_dssp CCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEEEEEEC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhccccc--CCCc--cceEEEeeccCccccCCCeeEEEecCCC
Confidence 3445566788888777777 5555999999999 9999987642 2344 6666776643221 111110 01112
Q ss_pred cccccHHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee---eecCCeeeccC
Q 004952 93 SKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (722)
Q Consensus 93 ~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (722)
... +|.+.+. ..++.+...+ |+. ++|++.+++++.++|.++|+++... |+.+..++|.+
T Consensus 358 ~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 358 SAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp CCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred Ccc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 223 6666554 3455677777 888 9999999999999999999998877 77776666444
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.00064 Score=74.09 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhhccCCChhhhhHHHHHhhhcCCC-----CCCCcchhhhhhhhcccccccC----CCCCccCCCc-
Q 004952 21 EEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIK----GPPLYWFPSL- 90 (722)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~~hq~~Pfe~~lv~~l~p~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~- 90 (722)
++..+|.++++++.+.+.++.||++||+. + +.++.. +.....| +++|++..... .......+..
T Consensus 317 ~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~~~~~~~~~~~ 390 (466)
T 2xhg_A 317 KQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRTELFTRSPYSG 390 (466)
T ss_dssp SCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSSSSCEECTTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccCCceecccccC
Confidence 44557778888877776667999999987 4 566543 2222222 24455432111 1111101100
Q ss_pred --------------cccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceee
Q 004952 91 --------------DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (722)
Q Consensus 91 --------------~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (722)
.....++|++.+...++++...+ |+. ++|++.+|+++.++|.++|+++...+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 391 GNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp TCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 11225666665555566777777 988 99999999999999999999875443
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=81.90 E-value=0.039 Score=58.76 Aligned_cols=107 Identities=10% Similarity=-0.082 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhh-ccCCChhhhh-----HHHHHhhhcCCCCCCCcchhhhhhhhcccccccC---CCCCccCCCc--cc
Q 004952 24 EEFDKILKQVISC-SKGLDAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK---GPPLYWFPSL--DQ 92 (722)
Q Consensus 24 ~~~~~~l~~~~~~-~~~~~hq~~P-----fe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~ 92 (722)
.+|.++++++.+. ..+++||++| |++ +++.+++. .++ +++ |+ |+..... .......... ..
T Consensus 298 ~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~--~pl-~~~-~~---n~~~~~~~~~~~~~~~~~~~~~~~ 369 (422)
T 1q9j_A 298 TDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG--LPP-LVF-CT---DATSFPTMRTPPGLEIEDIKGQFY 369 (422)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS--SCC-CEE-EE---CCCCCCSCCCCTTCEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC--CCc-eEE-Ee---cCCcCCCCCCCCCceeEeeecccc
Confidence 3566666666666 4555999994 999 99988753 333 332 22 3322111 1111111111 11
Q ss_pred -cccccHHHH-HHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceee
Q 004952 93 -SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (722)
Q Consensus 93 -~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (722)
...+++.+. +...++.+...+|+. + .+++++.++|.++|+++...+
T Consensus 370 ~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 370 CSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp CBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 334565554 334455555555665 4 889999999999999876443
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=81.30 E-value=3.6 Score=45.23 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCC
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~ 431 (722)
|+.++++.+..+.++ ..+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 355555544343333 46888776443 344445568999999998887765543 4477999999999998877
Q ss_pred CChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 432 PLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
...+++...++..++.++++.+.....+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7788999999999999999887765544
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=7.3 Score=41.18 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCCceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCcEEEec
Q 004952 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~--s~~~vv~~lA~~~aGa~~vpl 263 (722)
.++.+|.+.... |.+|.. ..+|.+.+...+..+++.+... +.++|++...++- ....+..+++++..|+..+++
T Consensus 88 ~~~~~~~i~~TS-GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 88 PQDRISRIHASS-GTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp CGGGCCEEEECC-CTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred ChhHeEEEEECC-CCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 456666554332 233333 4679999988888888877778 9999999999885 344455678899999999987
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccch
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~ 290 (722)
++ ...+++...+++.++.+++.....
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 65 478899999999999999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 722 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-80 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-70 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 4e-49 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 4e-46 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-43 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-39 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-34 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 268 bits (685), Expect = 1e-80
Identities = 144/618 (23%), Positives = 247/618 (39%), Gaps = 48/618 (7%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGGTWLPGSVLNIAECCLLPSN 184
K ++ P+ +W K + + + + + + W LN+A CL
Sbjct: 25 KQSINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCL--DR 80
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
H ++ + AI+W D +S ++Y+EL V AN L + KGD +AI MPM
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV 138
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
A + LA G V I F+ +A + S ++ + T D +R GR PL V
Sbjct: 139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 198
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
A LK + ++ + + + D+ W +D + P + +
Sbjct: 199 DDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSS 418
IL++SG+TG+PK + T + A + ++ D GD+Y ++GWV G +L+
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 419 FLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKI 473
GAT +++G P + + V V +L T P+ ++A +EG D + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 474 RSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 531
R S GE N + W K ++++ TE + ++ L A S
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSATR 435
Query: 532 MTAG--LVILDECGVPYPDDQP---CVGE--VGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G ++D G P + + G G +R E+ YF
Sbjct: 436 PFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERF-----EQTYFSTFKN 490
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD +R GY + GR DD +N+ G + + EIE A I E A +
Sbjct: 491 M-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVV 544
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKVVPEFPRTA 699
+ A G + + +V L G P+ + ++ ++ P + P+T
Sbjct: 545 GIPHAIKG-QAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIGPLATPDVLHWTDSLPKTR 602
Query: 700 SNKLLRRVLRDQIKHELS 717
S K++RR+LR + S
Sbjct: 603 SGKIMRRILRKIAAGDTS 620
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 240 bits (614), Expect = 1e-70
Identities = 130/618 (21%), Positives = 236/618 (38%), Gaps = 38/618 (6%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH----GGTWLPGSVLNIAECCLL 181
K ++E P ++ + + + + + K+ W LN C+
Sbjct: 8 KESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV- 65
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAID 239
H K N AI++ D + +TYKEL E+V VA L KGD +A+
Sbjct: 66 -DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A+I LAI G + + F++ + R+ +K + T D RGG+
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
V A V + + +D + + YY + +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFS 417
+L++SG+TG PK + + + + D DV+ ++GW+ G +++
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 418 SFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTK 472
L G +++G+P ++ ++ + + VT P+ ++ + +E
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 473 IRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQ--GSLLQPQAFGAFS 528
+R S GE + W S K I+++ TE S + + P G+ S
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
V+LD + G + + + + + +H+ + Y G
Sbjct: 423 FPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK-NHDRYLDTYLNPYPGY 481
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648
GD + GYI + GR DD +N+ G + S+ EIE D + E A + +
Sbjct: 482 Y--FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI-IEDPIVAECAVVGFND 538
Query: 649 AGGGPEVLVIFVVLKKGFTSQP------DKLKMIFSKAIQSKLNP-----LFKVVPEFPR 697
G + + FVVLK + +K ++ + P L +V + P+
Sbjct: 539 DLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPK 597
Query: 698 TASNKLLRRVLRDQIKHE 715
T S K++RR+LR + E
Sbjct: 598 TRSGKIMRRILRKILAGE 615
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 178 bits (453), Expect = 4e-49
Identities = 105/551 (19%), Positives = 177/551 (32%), Gaps = 58/551 (10%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ TY E+ ++ + L + GD +A
Sbjct: 20 AAALFGRKEVVSRLHTGEVHR----TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
R + Y A+ G V+ + + +EIA L ++ K + +L
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------------ 123
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
++AI + + E+ PV P A + +
Sbjct: 124 ---PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAY 176
Query: 364 SSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
++GTTG PK L A L DV + V + +++ L
Sbjct: 177 TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 236
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GA L S + GVT VP++ A + G +R G
Sbjct: 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 296
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGAFSTATMTAG--- 535
+ + + + G TE S +Q S L+ + T G
Sbjct: 297 AAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354
Query: 536 ----LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
L + DE G P P D +GEV + Y G + +A + +F
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------- 407
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646
R GDI GY+ ++ R D + GG SSV++E + E A +++
Sbjct: 408 -----RTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL-MGHPKVKEAAVVAI 461
Query: 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLR 705
E + VV + + + + + P + E PRT++ K L+
Sbjct: 462 PHPKWQ-ERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLK 520
Query: 706 RVLRDQIKHEL 716
R LR+Q K+
Sbjct: 521 RALREQYKNYY 531
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 170 bits (431), Expect = 4e-46
Identities = 88/559 (15%), Positives = 178/559 (31%), Gaps = 48/559 (8%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
P E L +R I + + + + +TY E E + +A A+
Sbjct: 12 YPLEDGTAGE--QLHKAMKRYALVPGTIAFTDAHIEVN----ITYAEYFEMSVRLAEAMK 65
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ I + +++ + L + G V D + RE+ + +S+ +F
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346
L+ ++ K I++ + + G ++ +Y P
Sbjct: 126 SKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP- 180
Query: 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWP 403
++ + I+ SSG+TG PK + + +
Sbjct: 181 ---ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237
Query: 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 463
G + G + L E F + +QD + VP+L + +
Sbjct: 238 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKST 296
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
++ D + + AS G + + ++ + I + G TE +SA + +
Sbjct: 297 LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-ITPEGDDK 355
Query: 524 FGAFSTATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYF 579
GA ++D + G +Q CV + Y+ N +
Sbjct: 356 PGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN------NPEATNALI 409
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639
GDI + + R + G + + E+E + Q I
Sbjct: 410 DKDGWL------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IF 462
Query: 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV------VP 693
+ + G E+ VVL+ G T ++ + S++ K+ V
Sbjct: 463 DAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIV----DYVASQVTTAKKLRGGVVFVD 517
Query: 694 EFPRTASNKLLRRVLRDQI 712
E P+ + KL R +R+ +
Sbjct: 518 EVPKGLTGKLDARKIREIL 536
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 161 bits (408), Expect = 3e-43
Identities = 91/527 (17%), Positives = 174/527 (33%), Gaps = 62/527 (11%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N VAIV ++ +TY EL + +A K + I M ++ I
Sbjct: 38 NNVAIVCENEQ--------LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LA++ AG V I + I L S+A+ + TQ ++
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------------- 132
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
++ I + + + E+D R V + + ++++SGTTG
Sbjct: 133 ---LIHNIQFNGQVEIFEED----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTG 179
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK +++ D ++ + +F + L GA+L +
Sbjct: 180 NPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL 239
Query: 430 GSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ F +++ +TV+ L+ I++ + G ++
Sbjct: 240 KDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSL 293
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
K Y T ++ ++ + I+DE
Sbjct: 294 VNKWKEKVTYINAYGPTETTICATTWVATK-ETIGHSVPIGAPIQNTQIYIVDENLQLKS 352
Query: 548 DDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
+ C+G GL Y + F P G L + GD + G
Sbjct: 353 VGEAGELCIGGEGLARGYWK------RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 406
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
I GR D+ + + G + E+E + I ETA L + V +K
Sbjct: 407 IEYLGRIDNQVKIRGHRVELEEVESIL-LKHMYISETAVSVHKDHQEQ-PYLCAYFVSEK 464
Query: 665 GFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRD 710
++L+ S+ + + + P F + + P T++ K+ R+ L +
Sbjct: 465 HIP--LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 151 bits (381), Expect = 2e-39
Identities = 92/530 (17%), Positives = 169/530 (31%), Gaps = 40/530 (7%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ +AI +Y+EL + +A + + D + + +P +
Sbjct: 40 DRIAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ G + V S + EI ++A D A
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQ 143
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
LP + N + E+ L +D + P + + S G+TG
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTG 195
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALY 428
K IP T I L VY + L +
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488
SP ++ VT+ VP L W + D + ++ G + +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVPYP 547
+ + + + + G E Y + + + + D+
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
GE G L + E + G R GDI++ T GYI+V
Sbjct: 375 P-----GETGH--LLTRGPYTIRGYYKAEEHNAASFTEDGFY--RTGDIVRLTRDGYIVV 425
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
+GRA D +N GG K ++ E+E A ++ + A +S+ G E +F++ +
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDEAP 483
Query: 668 SQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHEL 716
+ + + + + P + V FP+T K+ ++ LR+ I +L
Sbjct: 484 KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 134 bits (337), Expect = 5e-34
Identities = 93/514 (18%), Positives = 150/514 (29%), Gaps = 52/514 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + A + G+ I
Sbjct: 90 SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 386
+ + S P I ++SGTTG PKA P S
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446
+ +V L V+G + + L + + VQ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 447 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
T L P+ + A G L +R G T + D + + +
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNI 303
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 564
GT + + + A + + I + + V
Sbjct: 304 YGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
A E + + G + + GR DD + GG
Sbjct: 364 GYLNQPQATAE--KLQDGWYRTSDVAVWTPE-------GTVRILGRVDDMIISGGENIHP 414
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIERV A + E I ++ G + + VV + G T D L +S
Sbjct: 415 SEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALD----TFCRSS 468
Query: 685 LNPLFKV------VPEFPRTASNKLLRRVLRDQI 712
FK + + P+ A NK+LRR L Q+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 97.32 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 89.52 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 88.19 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 82.77 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 81.53 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6.5e-88 Score=772.95 Aligned_cols=578 Identities=25% Similarity=0.385 Sum_probs=475.2
Q ss_pred CCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCC-CCCCCCCcCCCCccchhhhcccCcccCCCCCCceEE
Q 004952 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (722)
Q Consensus 117 ~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (722)
.+.+|+.++++++++++.||..+++. ..|.+++.++++... ......+||.++.+|+++|+++++. +.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHHH--HhCCCCEEE
Confidence 44678999999999999999999986 568889988876543 2233568999999999999999875 578999999
Q ss_pred EEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHH
Q 004952 196 VWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274 (722)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~ 274 (722)
++.+. +.+..+++||+||+++++++|++|+++ |++||+|+++++|++++++++|||+++|++++|++|.++.+++.+
T Consensus 92 i~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~ 169 (643)
T d1pg4a_ 92 IWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 169 (643)
T ss_dssp EEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHH
Confidence 98765 345667899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEeccchhcCCccccchHHHhhcC-----C--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCC
Q 004952 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (722)
Q Consensus 275 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (722)
++++++++++|+++...+..+..+....+...+ + ..++++.......... ......+.+....... .
T Consensus 170 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 243 (643)
T d1pg4a_ 170 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKASP-----E 243 (643)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSCS-----C
T ss_pred HHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc-cccchhhhhhhcccCc-----c
Confidence 999999999999988777777666555444321 1 2344443332221111 1122334444433322 2
Q ss_pred CCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHH-HHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEE
Q 004952 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (722)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~l 425 (722)
..+...+++|++||+|||||||+||||+++|++++.. .......++++++|++++.+|++|++++ +.++++|++|+++
T Consensus 244 ~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~ 323 (643)
T d1pg4a_ 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATT 323 (643)
T ss_dssp CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEE
T ss_pred cCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 3345567899999999999999999999999997654 4444556899999999999999999997 5688999999999
Q ss_pred EEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhcc--CC
Q 004952 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (722)
Q Consensus 426 v~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~--~~ 498 (722)
+++++. +++..++++|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++.+.++ ++
T Consensus 324 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~ 403 (643)
T d1pg4a_ 324 LMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403 (643)
T ss_dssp EEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCS
T ss_pred EEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCc
Confidence 998753 367889999999999999999999999987643 35667999999999999999999999988874 57
Q ss_pred cccccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccc-cccccc
Q 004952 499 AIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEE 576 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~-~~~~t~ 576 (722)
+++|.||+||++++++...+ ..+...+++|+|++|++++|+|++|++++.|+. |||+|...+.+.+..|+ +++.+.
T Consensus 404 ~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~--Gel~v~~~~p~~~~~~~~~~~~~~ 481 (643)
T d1pg4a_ 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFE 481 (643)
T ss_dssp CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHH
T ss_pred eEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCce--EEEEEecCCCcccccccCChhhch
Confidence 89999999999876655433 334567899999999999999999999999985 99999543333322233 233333
Q ss_pred c-ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 577 V-YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 577 ~-~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
+ +|.. ..+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.||+|++++++..| +.
T Consensus 482 ~~~~~~-----~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~ 554 (643)
T d1pg4a_ 482 QTYFST-----FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QA 554 (643)
T ss_dssp HHHHSS-----STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhccc-----CCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eE
Confidence 2 2222 3349999999999999999999999999999999999999999995 9999999999999998888 89
Q ss_pred EEEEEEecCCCCCCH---HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 656 LVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 656 l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++|||+++++...+. .+|+++|+++|+.|++|. ++++++||+|+||||+|++|+++++.+
T Consensus 555 ~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 555 IYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 999999999877664 378999999999999995 559999999999999999999998775
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-83 Score=737.19 Aligned_cols=579 Identities=23% Similarity=0.328 Sum_probs=457.6
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCC----CCCCCCcCCCCccchhhhcccCcccCCCCCCceEE
Q 004952 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (722)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (722)
||+.+++++++++.+||.++++.. +.|.+++++++..... ..+...||.++.+|++++|+++++ +++||++|+
T Consensus 2 ~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~Al 78 (640)
T d1ry2a_ 2 DYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKAI 78 (640)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEEE
T ss_pred CHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHH--hhCCCCEEE
Confidence 689999999999999999998876 7899999988654321 234568999999999999999875 789999999
Q ss_pred EEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHH
Q 004952 196 VWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (722)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~ 273 (722)
++.+. +.+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98654 3456679999999999999999997 67 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEeccchhcCCccccchHHHhhcCC---C--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCC
Q 004952 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 348 (722)
Q Consensus 274 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (722)
++++++++++++++....+..+.+.....+.+... . ....+.................+........ ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 231 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TYY 231 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccc-----ccc
Confidence 99999999999999887766666655444433221 1 1222221111111111111122222222211 223
Q ss_pred CCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHH-hhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEE
Q 004952 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (722)
Q Consensus 349 ~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (722)
......++|++||+|||||||.||||+++|++++..... ....++++++|++++.+|++|+++. +.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 344556789999999999999999999999997665444 3446789999999999999999986 57889999999999
Q ss_pred EecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhccC--Cc
Q 004952 427 LYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NA 499 (722)
Q Consensus 427 ~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~--~~ 499 (722)
++++. .++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++. .+
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 98754 367889999999999999999999999987643 355679999999999999999999999988763 56
Q ss_pred ccccccccccccccccCCc--CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe---cccCCCccccccccc
Q 004952 500 IIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---PLYLGASDRLLNADH 574 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~---~~y~~~~~~~~~~~~ 574 (722)
+++.||+||++........ ..+...+++|+|++|++++|+|+++...+.+..+.||+++. |+++. .++.+++.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~--gy~~~~e~ 469 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFAR--TIWKNHDR 469 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCC--EETTCHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCccc--ccccCHHH
Confidence 9999999999865444332 34456789999999999999998765443332225999983 33333 23335555
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
+.+.|.. +..+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +
T Consensus 470 t~~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e 543 (640)
T d1ry2a_ 470 YLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-Q 543 (640)
T ss_dssp HHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-C
T ss_pred HHhhhcc----CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-e
Confidence 6555432 13349999999999999999999999999999999999999999995 9999999999999998888 8
Q ss_pred EEEEEEEecCCCCCC----------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 655 VLVIFVVLKKGFTSQ----------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~----------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
.++|||+++++...+ .++|+++++++|+.|++|. ++++++||+|+||||+|++|+++++++.
T Consensus 544 ~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 616 (640)
T d1ry2a_ 544 AVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES 616 (640)
T ss_dssp CCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred EEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCc
Confidence 999999998864322 2468888999999999996 5589999999999999999999987653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.4e-71 Score=627.89 Aligned_cols=495 Identities=17% Similarity=0.178 Sum_probs=389.7
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 004952 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (722)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~ 266 (722)
..|+++|+++.+.+ +++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCeEEEEeCCCC------eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCC
Confidence 45999999875442 3899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC--CCC
Q 004952 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPR 344 (722)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 344 (722)
++.+++.++|++++++++|+++... +....+....+....++....... ......+.+....... ...
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHhccceEEeeecccc------ccchhccccccccceeeeecCCcc----ccccchhhhhhhhhccccccc
Confidence 9999999999999999999998532 334444445554333322221110 1122233333222111 011
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---cCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
....+.....+++++||+|||||||.||||+++|++++....+.... ..+.+++++++..|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 22233344567899999999999999999999999988766655433 457889999999999999999888888889
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+.++... ..+......++..+++|.+.++|+++..+.........++++|+.+++||+++++...+++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred cccccccc-ccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceee
Confidence 98887765 45677888999999999999999999999988777777889999999999999999999998888777899
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
+.||+||++..++.... .....+++|+|++|++++|+| ++|+++|.|++ |||+|. .||++ +++.+
T Consensus 335 ~~YG~TE~~~~~~~~~~-~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~~ 405 (541)
T d1lcia_ 335 QGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN------NPEAT 405 (541)
T ss_dssp CEECCGGGSSCSEECCC-C---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT------BHHHH
T ss_pred ecCCccccCceEEecCc-ccCCCCccccccCCCEEEEEECCCCcCCCCCCe--EEEEEccCccCCeeCC------Chhhh
Confidence 99999999976655433 345678999999999999999 56999999996 999993 45554 33444
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
...|. +.+||+|||+|++++||.++++||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| ++
T Consensus 406 ~~~~~------~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~ 477 (541)
T d1lcia_ 406 NALID------KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-EL 477 (541)
T ss_dssp HHHBC------TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhccc------CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-EE
Confidence 44443 3449999999999999999999999999999999999999999995 9999999999999998887 89
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++|||+++++...+.++|+++|+++|+.+ ++|. ++++++||+|+||||||++|++++.++-
T Consensus 478 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 540 (541)
T d1lcia_ 478 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 540 (541)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence 99999999888888899999999999765 6785 5589999999999999999999988753
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-72 Score=633.20 Aligned_cols=507 Identities=21% Similarity=0.212 Sum_probs=373.3
Q ss_pred cCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 004952 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (722)
Q Consensus 167 w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~ 245 (722)
|.-+...|..+ ++++++ +++||++|+++.+. ++.+++||+||+++++++|++|.+. +++||+|+|+++|+++
T Consensus 5 ~~~~~~~~l~~-~l~~~a--~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e 77 (534)
T d1v25a_ 5 TMMDEELNLWD-FLERAA--ALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR 77 (534)
T ss_dssp CBCCCCCCTHH-HHHHHH--HHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred ccCCCCCCHHH-HHHHHH--HHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH
Confidence 33344444433 444443 78999999998665 4556899999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCC
Q 004952 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325 (722)
Q Consensus 246 ~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (722)
+++++|||+++|++++|++|.++.+++.++++++++++++++.... +....+..........+.......
T Consensus 78 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (534)
T d1v25a_ 78 HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP---- 147 (534)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC----
T ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccccceeEEeecccc----
Confidence 9999999999999999999999999999999999999999987543 233333333333222222111110
Q ss_pred CCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh--hhhcCCCCCCEEEEe
Q 004952 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWP 403 (722)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~d~~l~~ 403 (722)
......... .. .........++++++++|||||||.||||+++|++++...... ...+....++++++.
T Consensus 148 -~~~~~~~~~-~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 218 (534)
T d1v25a_ 148 -EGYLAYEEA-LG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPV 218 (534)
T ss_dssp -TTCEEHHHH-CC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEEC
T ss_pred -ccccccccc-cc-------ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccc
Confidence 011111111 11 1122334567899999999999999999999999997655433 344567889999999
Q ss_pred cCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCC
Q 004952 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS 483 (722)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l 483 (722)
+|+.|..+....+.++..|+++++.....++..+..++.++++|++.++|+++..++........++++||.+++||+++
T Consensus 219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~ 298 (534)
T d1v25a_ 219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298 (534)
T ss_dssp SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCC
T ss_pred cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCC
Confidence 99999999988888999999999988778889999999999999999999999999886555667789999999999999
Q ss_pred CcchHHHHHhhccCCcccccccccccccccccCCcCC----------cCccccccccCCCceEEEECCCCCcCCCCCCcc
Q 004952 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (722)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~gi 553 (722)
++...+++... +.++++.||+||++.++....... ....+++|+|++|++++|+|++|+++|.+..++
T Consensus 299 ~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~ 376 (534)
T d1v25a_ 299 PRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 376 (534)
T ss_dssp CHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC
T ss_pred CHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCee
Confidence 99998888754 568999999999998765543221 122468999999999999999999998865446
Q ss_pred ceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHH
Q 004952 554 GEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (722)
Q Consensus 554 Gel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (722)
|||+|. .||++ +++.|+..|..++ ||+|||+|++++||.++++||+||+||++|+||+|.|||
T Consensus 377 Gel~v~g~~v~~gY~~------~~~~t~~~~~~dg------~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE 444 (534)
T d1v25a_ 377 GEVQLKGPWITGGYYG------NEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLE 444 (534)
T ss_dssp EEEEEESTTSBSSCBT------CHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHH
T ss_pred EEEEEcCCcccceecC------ChhhhhhhcccCC------CCccCceeEECCCccEEEecccccEEEECCEEECHHHHH
Confidence 999993 34544 5566777775433 999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHH
Q 004952 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRV 707 (722)
Q Consensus 629 ~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~ 707 (722)
++|. +||+|.||+|++++++..+ +.++|||+++++.....+.++.+++++||.|++|. ++++++||+|+||||||++
T Consensus 445 ~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~ 522 (534)
T d1v25a_ 445 NALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRA 522 (534)
T ss_dssp CC-----------CEEEEECSSSS-EEEEECC-------------------CCCTTTSCSBC--------------CCTT
T ss_pred HHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHH
Confidence 9995 9999999999999998888 89999999987544443444556788899999995 5599999999999999999
Q ss_pred HHHHHhhh
Q 004952 708 LRDQIKHE 715 (722)
Q Consensus 708 L~~~~~~~ 715 (722)
|+++|++.
T Consensus 523 lr~~~~~~ 530 (534)
T d1v25a_ 523 LREQYKNY 530 (534)
T ss_dssp HHHHSTTS
T ss_pred HHHHHHhh
Confidence 99998764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.1e-69 Score=608.50 Aligned_cols=471 Identities=19% Similarity=0.180 Sum_probs=392.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+|+++||++|++++++ ++||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 32 ~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 32 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103 (514)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 4589999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... ..+................ ...
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------------~~~---- 153 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDT-----------------IKI---- 153 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCST-----------------TTT----
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhccccccccccccc-----------------ccc----
Confidence 9999999999999999999999987532 1222222221111111000 000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
........+..++++++|+|||||||.||+|+++|+++..........+....+++++...+++|..+++.++.++..|+
T Consensus 154 ~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~ 233 (514)
T d1amua_ 154 REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGA 233 (514)
T ss_dssp SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 11112223456789999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecC--CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 424 TLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 424 ~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
++++... ..+....++.+..+.++.+..+|...... ...++++++.+++||+++++++..++.. +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~ 304 (514)
T d1amua_ 234 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYI 304 (514)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred cccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc---ceeEE
Confidence 9998753 23456778899999999999999875532 4456899999999999999998877655 46899
Q ss_pred ccccccccccccccCCc--CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-cccCCCccccccccccccc
Q 004952 502 ESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~~~~~~t~~~ 578 (722)
+.||+||++.+++.... ......++.|.++++..+.+.|++++++|.|+. |||+|. +..+. .|+.++..+.+.
T Consensus 305 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~--GEl~v~~~~~~~--gY~~~~~~~~~~ 380 (514)
T d1amua_ 305 NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLAR--GYWKRPELTSQK 380 (514)
T ss_dssp EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC--EETTCHHHHHHH
T ss_pred EeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCe--eEEEEccCcccc--ccccccccccee
Confidence 99999999976543332 233445688999999999999999999999995 999993 32221 233366677889
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
|..+++.++++||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|. +||+|.+|+|++.+++..| ++++|
T Consensus 381 ~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~~~~~~g-~~~~a 458 (514)
T d1amua_ 381 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-PYLCA 458 (514)
T ss_dssp EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEE
T ss_pred eEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-EEEEE
Confidence 999998889999999999999999999999999999999999999999999995 9999999999999998888 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+|+++++ .+.++|+++++++|+.|++|. ++++++||+|++|||+|++|++
T Consensus 459 ~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 459 YFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 9998875 567899999999999999995 5599999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.6e-68 Score=601.97 Aligned_cols=490 Identities=19% Similarity=0.218 Sum_probs=394.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 35 a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~ 106 (536)
T d1mdba_ 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (536)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecC
Confidence 478999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++++++........ ..........+.....+..... .....+.++.
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------- 170 (536)
T d1mdba_ 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEA-------EEFLPLEDLH-------- 170 (536)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCC-------TTSEEGGGCC--------
T ss_pred CCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhccccccceeeeecc-------ccccchhhcc--------
Confidence 99999999999999999999998753211000 0111111111111111110000 0111122211
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHH-HHHHhh-cC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFL-NG 422 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~-~G 422 (722)
..........++|+++|+|||||||.||||++||+++...+......+++.+++++++..++.|.+++.. ++..++ .|
T Consensus 171 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g 250 (536)
T d1mdba_ 171 TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250 (536)
T ss_dssp CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred cCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccc
Confidence 1122334567899999999999999999999999999999998888999999999999999999998743 333444 45
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
.+++.. ...++..+...+++++++.+..+|+.+..+..........+++++.+++||+++++....++...+ +...+.
T Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~ 328 (536)
T d1mdba_ 251 GRVVLS-PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQ 328 (536)
T ss_dssp CEEEEC-SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEE
T ss_pred cccccc-CCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeee
Confidence 555554 467888999999999999999999999998877666667789999999999999999988888766 467788
Q ss_pred cccccccccccccCCcCCcCccccccccCC-CceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccc
Q 004952 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEE 576 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~ 576 (722)
.||.+|.+..+...........+++|+|++ +..+.|.+++|++++.|+. |||++. +||++ +++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~--Gel~v~g~~~~~gY~~------~~~~~~ 400 (536)
T d1mdba_ 329 VFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHNA 400 (536)
T ss_dssp EEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHHH
T ss_pred ccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeeccccc--ceeecCCCcccccccc------cccccc
Confidence 888888776655555555556678999986 6677778889999999995 999993 44444 344444
Q ss_pred cceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 577 ~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
..+.. .+||+|||++++++||+|+++||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +++
T Consensus 401 ~~~~~------~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~~~~~g-~~~ 472 (536)
T d1mdba_ 401 ASFTE------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERS 472 (536)
T ss_dssp HHBCT------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEE
T ss_pred ccccc------cCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eEE
Confidence 44443 349999999999999999999999999999999999999999995 9999999999999988887 899
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+|||+++++ ..+.++|+++|+++ ||.|++|. ++++++||+|+||||||++|++++++++.+
T Consensus 473 ~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~a 535 (536)
T d1mdba_ 473 CVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (536)
T ss_dssp EEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEECCC-CCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHHhC
Confidence 999998875 45678999999986 99999995 558999999999999999999999887754
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=4.8e-65 Score=567.82 Aligned_cols=484 Identities=19% Similarity=0.149 Sum_probs=384.4
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+|+++||++|+++.+.+ +++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi 84 (503)
T d3cw9a1 11 AATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (503)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 34789999999986552 4899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++++++++++++++++++|++.... ....+........++. +.++........
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~i~-----------------~~~~~~~~~~~~ 140 (503)
T d3cw9a1 85 NPRLKSAELAELIKRGEMTAAVIAVGRQ-------VADAIFQSGSGARIIF-----------------LGDLVRDGEPYS 140 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEESSCHH-------HHHHHHHTTCCCEEEE-----------------HHHHEETTEECC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEeecchH-------HHHHHhhhcccccccc-----------------chhhhhhhcccc
Confidence 9999999999999999999999886421 1112222222222211 222222211111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcC--CCCCCEEEEecCccccchhH-HHHHHhh
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~~~~L~ 420 (722)
...........+++++|++|||||||.||+|+++|+++...+......+. ....+++++.+|+.+..+.. ..+.+..
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (503)
T d3cw9a1 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (503)
T ss_dssp CSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHH
T ss_pred cCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccc
Confidence 12223334567899999999999999999999999999888877766554 45568899999988877764 3556666
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcC--CCCCCCccceeEEEeecCCCCcchHHHHHhhccCC
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~--~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
.++++++.+ ..++..+...+..++++++..+|+.+..+.... ......+++||.+++|||+++++...++...+ +.
T Consensus 221 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~ 298 (503)
T d3cw9a1 221 LDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PG 298 (503)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CS
T ss_pred ccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cc
Confidence 777777665 567889999999999999999999988776532 23455678999999999999999988887765 46
Q ss_pred cccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccc
Q 004952 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~ 578 (722)
.+.+.||.||++..+....... ......+.+.+.....+.+..++.++.|+. |++.+..+......++.+++.|++.
T Consensus 299 ~~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~~~~~~t~~~ 375 (503)
T d3cw9a1 299 EKVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQATAEK 375 (503)
T ss_dssp EEEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred cccccccccccceeeeeccccc-cccccccccccceeeeeecccCcccCCCcc--ccccccccccccccccCChhhhHHH
Confidence 7999999999987655443322 222344555566666667788999999997 7776633333223334455667777
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
|.+ | ||+|||+|++++||.|+++||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++|
T Consensus 376 ~~~-----g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a 446 (503)
T d3cw9a1 376 LQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTA 446 (503)
T ss_dssp EET-----T--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hcC-----C--ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEE
Confidence 642 3 9999999999999999999999999999999999999999994 9999999999999998887 89999
Q ss_pred EEEecCCCCCCHHHHHHHHH-HHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 659 FVVLKKGFTSQPDKLKMIFS-KAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~-~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
||+++++...+.++++++++ ++||.|++|. ++++++||+|+||||||++|++++
T Consensus 447 ~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 447 CVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 99999888888899999995 5799999995 558999999999999999999876
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=97.32 E-value=1.3e-06 Score=84.74 Aligned_cols=125 Identities=6% Similarity=-0.140 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCC-CCcchhhhhhhhcccccccC--CCCC--ccCCCcc
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHP-HGLHQLVYYSVYNDWDASIK--GPPL--YWFPSLD 91 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~-~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~ 91 (722)
+..++..+|.++++++.+. ..++.||++||+. |++.++..+. .++| .+++++..... .+.. .+... .
T Consensus 109 ~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~ 181 (250)
T d1l5aa2 109 RLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAEQSYFM-----SPFINILPFESPHFADCQTELKVL-A 181 (250)
T ss_dssp CCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTTCCBCC-----CSEEEEECCCCCCCTTCEEEEEEE-E
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHH-HHHHhcCCCCCCCcc-----ceEEEeeccCccCCCCCceEEEee-e
Confidence 4456677888888888877 4445999999999 9999875532 3333 44444432211 1111 11111 1
Q ss_pred ccccccHHHHHHHh-CCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee
Q 004952 92 QSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI 154 (722)
Q Consensus 92 ~~~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (722)
.....|+.+.+... ++.+...+ |+. ++|++++|+++.++|.++|+++...|+.+..++
T Consensus 182 ~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l 241 (250)
T d1l5aa2 182 SGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDV 241 (250)
T ss_dssp ECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred ccceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcCcccchh
Confidence 12234555554443 33456666 888 999999999999999999999998888887765
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=89.52 E-value=1.7 Score=44.73 Aligned_cols=103 Identities=16% Similarity=-0.011 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
..||.+|++...+|. .-.+|.+.+.. .++......+++++|++....+-+... +..+|+++..|+..+..+
T Consensus 23 ~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 96 (534)
T d1v25a_ 23 LFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTAN 96 (534)
T ss_dssp HSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred HcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecC
Confidence 356888877666542 23467766543 444455667899999998888777654 344789999999999998
Q ss_pred CCCChhhHHHHHHHhCCcEEechhHHHHHHHh
Q 004952 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (722)
.....+.+...++..++..++........+..
T Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 77788899999999999999988877766654
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=88.19 E-value=0.46 Score=49.41 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=75.8
Q ss_pred EEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEe
Q 004952 374 IPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (722)
Q Consensus 374 V~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (722)
..+|.+.+... ++......++++||++..+.+-+.+. +..+|+++..|+..+..+.....+.+...++..++++++
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 124 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence 45788776443 33444567899999998887766544 344678999999999988777888999999999999999
Q ss_pred chhHHHHHHHhcCCCCCCCccceeEEEeecCC
Q 004952 451 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (722)
Q Consensus 451 ~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~ 482 (722)
+....+..+.+... .++.++.+++....
T Consensus 125 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 152 (541)
T d1lcia_ 125 VSKKGLQKILNVQK----KLPIIQKIIIMDSK 152 (541)
T ss_dssp ECGGGHHHHHHHHH----HCTTCCEEEETTCS
T ss_pred eeccccccchhccc----cccccceeeeecCC
Confidence 99988776655321 24556666655443
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=82.77 E-value=1.8 Score=43.74 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHH---HHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.||.+|++.-.+| ..+|.+.+. +.++......+++++|++....+-+.+.- ..+|+++..|+..+..+.
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH-HHHHHHHHhCcEEEEeCC
Confidence 5688887665444 347777653 34444455678999999988877665443 347799999999999987
Q ss_pred CCChhhHHHHHHHhCCcEEechhH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPS 454 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~ 454 (722)
...++.+..++++.++..++....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 778889999999999999876543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=81.53 E-value=2.9 Score=42.54 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=82.8
Q ss_pred CCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEec
Q 004952 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPT 404 (722)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~ 404 (722)
...++.++++... ...||.+|++.- +-.+|.+.+... ++......+++++|++....
T Consensus 21 ~~~tl~~l~~~~a-----------~~~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~ 80 (514)
T d1amua_ 21 RDKTIHQLFEEQV-----------SKRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 80 (514)
T ss_dssp TTCCHHHHHHHHH-----------HHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCcHHHHHHHHH-----------HhCCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEe
Confidence 4445666665432 235788888731 235787776443 33344567999999998888
Q ss_pred CccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHh
Q 004952 405 NLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (722)
Q Consensus 405 ~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (722)
+-+... +..+|+++..|+..+..+.....+.+...++..++.++++.+.....+..
T Consensus 81 ~n~~~~-v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 81 EKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp CSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCHHH-HHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 777655 34477999999999999877788899999999999999998887777654
|