Citrus Sinensis ID: 004955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--
MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPICQN
ccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccEEEEccccccHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEcHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHcHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHccccccccccccc
cccccccccccEccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHcccEEEEccccEcHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccEcccccHHHHHHHHHHHHcccccEEEcccccEccHHHHHHHcccccccEEEccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccc
melshetcngikndrnggtsslglctgtdplnwTVAADSLKGSHLDEVKRMIDEYRRpvvklggesltiGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSmmkgtdsygvttgfgatshrrtKQGGALQKELIRFLNsgifgngtesshtlphsATRAAMLVRVNTLLQGYSGIRFEILETITKFLnhnitpclplrgtitasgdlvpLSYIAGlltgrpnskavgpngqvlnpteafnlagvtsgffelqpkeglalvngTAVGSGLAATVLFEANILAIMSEVLSAIFAEVmngkpeftdhlthklkhhpgQIEAAAIMEHILDGSSYVKAAQKlheidplqkpkqdryalrtspqwlgpQIEVIRAATKMIEREInsvndnplidvsrnkalhggnfqgtpigvsmdNTRLAIASIGKLLFAQFSELVNDFynnglpsnltggrnpsldygfkGAEIAMASYCSELQFlanpvtnhvqsaeqhnqdvnslglissrktAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMgvngelhpsrfcekDLIKVVDREYVfayiddpcsasypLMQKLRQVLVDHaldngdreknsTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKecrsyplyKIVREEIGTslltgekvrspgeeFDKVFAAMCEGKLIDPMLECLkewngaplpicqn
MELSHETCngikndrnggtsslgLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEidplqkpkqdryalrtspqwlgpqiEVIRAATKMIEREinsvndnpLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTmgvngelhpsrfcEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALdngdreknsttsiFQKIGAFEDELKTLLPKEVEIARTelesgnaaianrikecrsyplYKIVREEIgtslltgekvrspgEEFDKVFAAMCEGKLIDPMLECLKEwngaplpicqn
MELSHETCNGIKNDRNggtsslglctgtDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPICQN
*********************LGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA*********GALQKELIRFLNSGIFGNGT*****LPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHE***********YALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV************LGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALD*********TSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPI***
************************CTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY**************KPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALD**********SIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC**
MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPICQN
************************CTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGD*E*NSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC*N
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MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPICQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query722 2.2.26 [Sep-21-2011]
Q42667722 Phenylalanine ammonia-lya N/A no 1.0 1.0 0.988 0.0
O64963717 Phenylalanine ammonia-lya N/A no 0.986 0.993 0.857 0.0
P25872715 Phenylalanine ammonia-lya N/A no 0.975 0.984 0.857 0.0
P45729718 Phenylalanine ammonia-lya N/A no 0.984 0.990 0.857 0.0
P45733712 Phenylalanine ammonia-lya N/A no 0.973 0.987 0.859 0.0
P35513712 Phenylalanine ammonia-lya N/A no 0.973 0.987 0.859 0.0
Q9SMK9718 Phenylalanine ammonia-lya N/A no 0.984 0.990 0.834 0.0
P45726714 Phenylalanine ammonia-lya N/A no 0.973 0.984 0.856 0.0
P45730715 Phenylalanine ammonia-lya no no 0.975 0.984 0.851 0.0
P26600721 Phenylalanine ammonia-lya N/A no 0.969 0.970 0.845 0.0
>sp|Q42667|PALY_CITLI Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1477 bits (3824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/722 (98%), Positives = 716/722 (99%)

Query: 1   MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV 60
           MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV
Sbjct: 1   MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV 60

Query: 61  KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA 120
           KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA
Sbjct: 61  KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA 120

Query: 121 TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
           TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF
Sbjct: 121 TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180

Query: 181 EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTE 240
           EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NGQVLNPTE
Sbjct: 181 EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTE 240

Query: 241 AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG 300
           AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG
Sbjct: 241 AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG 300

Query: 301 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTS 360
           KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHE DPLQKPKQDRYALRTS
Sbjct: 301 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHETDPLQKPKQDRYALRTS 360

Query: 361 PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 420
           PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI
Sbjct: 361 PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 420

Query: 421 ASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 480
           ASIGKL+FAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV
Sbjct: 421 ASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 480

Query: 481 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV 540
           TNHVQSAEQHNQDVNSLGL SSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV
Sbjct: 481 TNHVQSAEQHNQDVNSLGLNSSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV 540

Query: 541 KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQV 600
           KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSAS PLMQKLRQV
Sbjct: 541 KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASSPLMQKLRQV 600

Query: 601 LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECR 660
           LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAI NRIKECR
Sbjct: 601 LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECR 660

Query: 661 SYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
           SYPLYKIVRE+IGTSLLTGEKVRSPGEEFDKVF AMCEGKLIDPMLECLKEWNGAPLPIC
Sbjct: 661 SYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720

Query: 721 QN 722
           QN
Sbjct: 721 QN 722
This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 4
>sp|O64963|PAL1_PRUAV Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1 Back     alignment and function description
>sp|P25872|PAL1_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1 Back     alignment and function description
>sp|P45729|PAL3_PETCR Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1 Back     alignment and function description
>sp|P45733|PAL3_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P35513|PAL2_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2 Back     alignment and function description
>sp|Q9SMK9|PAL2_CICAR Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1 Back     alignment and function description
>sp|P45726|PALY_CAMSI Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1 Back     alignment and function description
>sp|P45730|PALY_POPTR Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1 Back     alignment and function description
>sp|P26600|PAL5_SOLLC Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
3024360722 RecName: Full=Phenylalanine ammonia-lyas 1.0 1.0 0.988 0.0
255581751719 Phenylalanine ammonia-lyase, putative [R 0.990 0.994 0.877 0.0
183585195711 phenylalanine ammonia-lyase [Populus tri 0.977 0.992 0.888 0.0
14486430710 phenylalanine ammonia-lyase 1 [Manihot e 0.970 0.987 0.884 0.0
224109780711 phenylalanine amonnia lyase [Populus tri 0.977 0.992 0.885 0.0
429326622711 phenylalanine ammonia-lyase [Populus tom 0.984 1.0 0.876 0.0
224100783711 phenylalanine amonnia lyase [Populus tri 0.984 1.0 0.877 0.0
34541972711 phenylalanine ammonia lyase [Populus tri 0.977 0.992 0.885 0.0
382929313720 phenylalanine ammonialyase [Malus hybrid 0.997 1.0 0.858 0.0
113203757713 phenylalanine ammonia lyase [Jatropha cu 0.966 0.978 0.873 0.0
>gi|3024360|sp|Q42667.1|PALY_CITLI RecName: Full=Phenylalanine ammonia-lyase gi|1276903|gb|AAB67733.1| phenylalanine ammonia-lyase [Citrus limon] Back     alignment and taxonomy information
 Score = 1477 bits (3824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/722 (98%), Positives = 716/722 (99%)

Query: 1   MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV 60
           MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV
Sbjct: 1   MELSHETCNGIKNDRNGGTSSLGLCTGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVV 60

Query: 61  KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA 120
           KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA
Sbjct: 61  KLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGA 120

Query: 121 TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
           TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF
Sbjct: 121 TSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180

Query: 181 EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTE 240
           EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NGQVLNPTE
Sbjct: 181 EILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTE 240

Query: 241 AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG 300
           AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG
Sbjct: 241 AFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNG 300

Query: 301 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTS 360
           KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHE DPLQKPKQDRYALRTS
Sbjct: 301 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHETDPLQKPKQDRYALRTS 360

Query: 361 PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 420
           PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI
Sbjct: 361 PQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 420

Query: 421 ASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 480
           ASIGKL+FAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV
Sbjct: 421 ASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 480

Query: 481 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV 540
           TNHVQSAEQHNQDVNSLGL SSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV
Sbjct: 481 TNHVQSAEQHNQDVNSLGLNSSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTV 540

Query: 541 KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQV 600
           KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSAS PLMQKLRQV
Sbjct: 541 KNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASSPLMQKLRQV 600

Query: 601 LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECR 660
           LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAI NRIKECR
Sbjct: 601 LVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECR 660

Query: 661 SYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
           SYPLYKIVRE+IGTSLLTGEKVRSPGEEFDKVF AMCEGKLIDPMLECLKEWNGAPLPIC
Sbjct: 661 SYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720

Query: 721 QN 722
           QN
Sbjct: 721 QN 722

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581751|ref|XP_002531677.1| Phenylalanine ammonia-lyase, putative [Ricinus communis] gi|223528682|gb|EEF30696.1| Phenylalanine ammonia-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|183585195|gb|ACC63889.1| phenylalanine ammonia-lyase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|14486430|gb|AAK62030.1| phenylalanine ammonia-lyase 1 [Manihot esculenta] Back     alignment and taxonomy information
>gi|224109780|ref|XP_002315308.1| phenylalanine amonnia lyase [Populus trichocarpa] gi|183585199|gb|ACC63891.1| phenylalanine ammonia-lyase [Populus trichocarpa] gi|222864348|gb|EEF01479.1| phenylalanine amonnia lyase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326622|gb|AFZ78651.1| phenylalanine ammonia-lyase [Populus tomentosa] Back     alignment and taxonomy information
>gi|224100783|ref|XP_002312013.1| phenylalanine amonnia lyase [Populus trichocarpa] gi|183585197|gb|ACC63890.1| phenylalanine ammonia-lyase [Populus trichocarpa] gi|222851833|gb|EEE89380.1| phenylalanine amonnia lyase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|34541972|gb|AAQ74878.1| phenylalanine ammonia lyase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|382929313|gb|AFG30054.1| phenylalanine ammonialyase [Malus hybrid cultivar] Back     alignment and taxonomy information
>gi|113203757|gb|ABI33979.1| phenylalanine ammonia lyase [Jatropha curcas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
TAIR|locus:2057981725 PAL1 "PHE ammonia lyase 1" [Ar 0.958 0.954 0.832 1.10000010554e-317
TAIR|locus:2101958717 PAL2 "phenylalanine ammonia-ly 0.958 0.965 0.833 6.89999976374e-317
TAIR|locus:2076244707 PAL4 "phenylalanine ammonia-ly 0.957 0.977 0.839 2.39999999981e-314
ASPGD|ASPL0000000997701 AN6075 [Emericella nidulans (t 0.876 0.902 0.330 4e-90
ASPGD|ASPL0000017810686 AN3897 [Emericella nidulans (t 0.873 0.919 0.341 8.9e-86
TIGR_CMR|SO_4374521 SO_4374 "histidine ammonia-lya 0.513 0.712 0.336 3e-53
UNIPROTKB|B8ZV93526 tam "Tyrosine 2,3-aminomutase" 0.608 0.834 0.341 3.8e-53
UNIPROTKB|B8ZV94526 tam "Tyrosine 2,3-aminomutase" 0.608 0.834 0.339 4.9e-53
DICTYBASE|DDB_G0273787529 DDB_G0273787 "putative histidi 0.662 0.903 0.321 5.6e-52
DICTYBASE|DDB_G0273081529 DDB_G0273081 "putative histidi 0.662 0.903 0.321 5.6e-52
TAIR|locus:2057981 PAL1 "PHE ammonia lyase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3046 (1077.3 bits), Expect = 1.1e-317, P = 1.1e-317
 Identities = 576/692 (83%), Positives = 638/692 (92%)

Query:    29 DPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAE 88
             DPLNW  AA+ +KGSHLDEVKRM+ E+R+PVV LGGE+LTIGQV AI+   + VKVEL+E
Sbjct:    34 DPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSE 93

Query:    89 AARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNG 148
              ARAGV ASSDWVM+SM KGTDSYGVTTGFGATSHRRTK G ALQKELIRFLN+GIFG+ 
Sbjct:    94 TARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGST 153

Query:   149 TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASG 208
              E+SHTLPHSATRAAMLVR+NTLLQG+SGIRFEILE IT FLN+NITP LPLRGTITASG
Sbjct:   154 KETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITASG 213

Query:   209 DLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAV 268
             DLVPLSYIAGLLTGRPNSKA GPNG+ L   EAF LAG++SGFF+LQPKEGLALVNGTAV
Sbjct:   214 DLVPLSYIAGLLTGRPNSKATGPNGEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAV 273

Query:   269 GSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHI 328
             GSG+A+ VLFE N+L++++E+LSA+FAEVM+GKPEFTDHLTH+LKHHPGQIEAAAIMEHI
Sbjct:   274 GSGMASMVLFETNVLSVLAEILSAVFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHI 333

Query:   329 LDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDN 388
             LDGSSY+K AQKLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREINSVNDN
Sbjct:   334 LDGSSYMKLAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKSIEREINSVNDN 393

Query:   389 PLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLT 448
             PLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAIA+IGKL+FAQFSELVNDFYNNGLPSNLT
Sbjct:   394 PLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLT 453

Query:   449 GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEA 508
               RNPSLDYGFKGAEIAMASYCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISSRKT+EA
Sbjct:   454 ASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEA 513

Query:   509 VDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEK 568
             VDILKLMS+TFLVA+CQA+DLRHLEENL+ TVKNTVSQVAK+VLT GVNGELHPSRFCEK
Sbjct:   514 VDILKLMSTTFLVAICQAVDLRHLEENLRQTVKNTVSQVAKKVLTTGVNGELHPSRFCEK 573

Query:   569 DLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFED 628
             DL+KVVDRE V+ Y DDPCSA+YPL+QKLRQV+VDHAL NG+ EKN+ TSIF KIGAFE+
Sbjct:   574 DLLKVVDREQVYTYADDPCSATYPLIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEE 633

Query:   629 ELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEE 688
             ELK +LPKEVE AR   ++G +AI NRIKECRSYPLY+ VREE+GT LLTGEKV SPGEE
Sbjct:   634 ELKAVLPKEVEAARAAYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEE 693

Query:   689 FDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
             FDKVF A+CEGK+IDPM+ECL EWNGAP+PIC
Sbjct:   694 FDKVFTAICEGKIIDPMMECLNEWNGAPIPIC 725
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006559 "L-phenylalanine catabolic process" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009699 "phenylpropanoid biosynthetic process" evidence=TAS
GO:0016841 "ammonia-lyase activity" evidence=IEA
GO:0045548 "phenylalanine ammonia-lyase activity" evidence=ISS;IDA;TAS
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
GO:0009555 "pollen development" evidence=IMP
GO:0009819 "drought recovery" evidence=IMP
GO:0010224 "response to UV-B" evidence=IMP
GO:0046244 "salicylic acid catabolic process" evidence=IMP
GO:0046274 "lignin catabolic process" evidence=IMP
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA;TAS
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
GO:0006952 "defense response" evidence=TAS
TAIR|locus:2101958 PAL2 "phenylalanine ammonia-lyase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076244 PAL4 "phenylalanine ammonia-lyase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000997 AN6075 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017810 AN3897 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4374 SO_4374 "histidine ammonia-lyase, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV93 tam "Tyrosine 2,3-aminomutase" [Myxococcus fulvus (taxid:33)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV94 tam "Tyrosine 2,3-aminomutase" [Myxococcus sp. Mx-B0 (taxid:563923)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273787 DDB_G0273787 "putative histidine ammonia-lyase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273081 DDB_G0273081 "putative histidine ammonia-lyase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P45724PAL2_ARATH4, ., 3, ., 1, ., 2, 40.83160.96260.9693nono
P31425PAL1_SOLTU4, ., 3, ., 1, ., 2, 40.84170.95840.9611N/Ano
P45726PALY_CAMSI4, ., 3, ., 1, ., 2, 40.85650.97360.9845N/Ano
P45727PALY_PERAE4, ., 3, ., 1, ., 2, 40.86450.85730.9983N/Ano
O04058PALY_HELAN4, ., 3, ., 1, ., 2, 40.85060.90440.9790N/Ano
P45725PAL3_ARATH4, ., 3, ., 1, ., 2, 40.75140.94180.9798nono
P25872PAL1_TOBAC4, ., 3, ., 1, ., 2, 40.85750.97500.9846N/Ano
Q9SS45PAL4_ARATH4, ., 3, ., 1, ., 2, 40.83980.95700.9773nono
P45728PAL2_PETCR4, ., 3, ., 1, ., 2, 40.84100.98750.9958N/Ano
P45729PAL3_PETCR4, ., 3, ., 1, ., 2, 40.85730.98470.9902N/Ano
P19143PAL3_PHAVU4, ., 3, ., 1, ., 2, 40.72090.97360.9901N/Ano
P19142PAL2_PHAVU4, ., 3, ., 1, ., 2, 40.85540.95840.9719N/Ano
P52777PALY_PINTA4, ., 3, ., 1, ., 2, 40.66760.95560.9151N/Ano
Q9SMK9PAL2_CICAR4, ., 3, ., 1, ., 2, 40.83470.98470.9902N/Ano
Q8VXG7PALY_MAIZE4, ., 3, ., 1, ., 2, 50.69240.96120.9871N/Ano
P27991PAL1_SOYBN4, ., 3, ., 1, ., 2, 40.83770.98330.9957nono
P27990PALY_MEDSA4, ., 3, ., 1, ., 2, 40.85400.95840.9544N/Ano
P14717PAL1_ORYSJ4, ., 3, ., 1, ., 2, 40.71710.95290.9814nono
P26600PAL5_SOLLC4, ., 3, ., 1, ., 2, 40.84580.96950.9708N/Ano
Q9M568PAL1_RUBID4, ., 3, ., 1, ., 2, 40.82260.97640.9929N/Ano
O23924PALY_DIGLA4, ., 3, ., 1, ., 2, 40.84580.97640.9887N/Ano
P45733PAL3_TOBAC4, ., 3, ., 1, ., 2, 40.85950.97360.9873N/Ano
P45732PALY_STYHU4, ., 3, ., 1, ., 2, 40.85110.95840.9678N/Ano
P45731PAL1_POPKI4, ., 3, ., 1, ., 2, 40.86730.94451.0N/Ano
P45730PALY_POPTR4, ., 3, ., 1, ., 2, 40.85160.97500.9846nono
P45734PALY_TRISU4, ., 3, ., 1, ., 2, 40.85400.95700.9531N/Ano
Q04593PAL2_PEA4, ., 3, ., 1, ., 2, 40.85110.95700.9544N/Ano
Q42667PALY_CITLI4, ., 3, ., 1, ., 2, 40.98891.01.0N/Ano
P07218PAL1_PHAVU4, ., 3, ., 1, ., 2, 40.83990.70081.0N/Ano
O23865PAL1_DAUCA4, ., 3, ., 1, ., 2, 40.85240.96390.9830N/Ano
Q42609PALY_BROFI4, ., 3, ., 1, ., 2, 40.82260.96260.9886N/Ano
O49835PAL1_LITER4, ., 3, ., 1, ., 2, 40.84390.97500.9915N/Ano
O49836PAL2_LITER4, ., 3, ., 1, ., 2, 40.83070.97220.9957N/Ano
Q42858PAL2_IPOBA4, ., 3, ., 1, ., 2, 40.82690.97220.9915N/Ano
Q43210PALY_WHEAT4, ., 3, ., 1, ., 2, 40.77310.95420.9842N/Ano
P35510PAL1_ARATH4, ., 3, ., 1, ., 2, 40.80630.98470.9806yesno
P35511PAL1_SOLLC4, ., 3, ., 1, ., 2, 40.83800.96810.9928N/Ano
P35513PAL2_TOBAC4, ., 3, ., 1, ., 2, 40.85950.97360.9873N/Ano
Q01861PAL1_PEA4, ., 3, ., 1, ., 2, 40.84650.95560.9543N/Ano
O64963PAL1_PRUAV4, ., 3, ., 1, ., 2, 40.85710.98610.9930N/Ano
P31426PAL2_SOLTU4, ., 3, ., 1, ., 2, 40.86630.77280.9457N/Ano
Q43052PAL2_POPKI4, ., 3, ., 1, ., 2, 40.86280.97640.9929N/Ano
P14166PAL1_IPOBA4, ., 3, ., 1, ., 2, 40.82620.96670.9872N/Ano
Q40910PAL4_POPKI4, ., 3, ., 1, ., 2, 40.87910.78940.9982N/Ano
P24481PAL1_PETCR4, ., 3, ., 1, ., 2, 40.84370.98750.9958N/Ano
A2X7F7PAL2_ORYSI4, ., 3, ., 1, ., 2, 40.75420.97920.9915N/Ano
Q0DZE0PAL2_ORYSJ4, ., 3, ., 1, ., 2, 40.75280.97920.9915nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.1.240.993
3rd Layer4.3.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PAL5
SubName- Full=Phenylalanine ammonia-lyase; (712 aa)
(Populus trichocarpa)
Predicted Functional Partners:
Ptr4CL3
SubName- Full=4-coumarate-CoA ligase; (541 aa)
     •• 0.966
Ptr4CL4
SubName- Full=Putative uncharacterized protein; (570 aa)
     •• 0.966
Ptr4CL8
4-coumarate-coa ligase (544 aa)
     •• 0.962
ACLL12
4-coumarate-coa ligase (544 aa)
     •• 0.962
estExt_fgenesh4_pm.C_LG_XII0003
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)
     •• 0.946
estExt_fgenesh4_pm.C_LG_IV0266
glutamine synthetase (EC-6.3.1.2) (356 aa)
     •• 0.946
estExt_fgenesh4_pg.C_LG_VII0739
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)
     •• 0.946
estExt_fgenesh4_pg.C_1220090
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)
     •• 0.946
estExt_Genewise1_v1.C_LG_V3325
glutamine synthetase (EC-6.3.1.2) (356 aa)
     •• 0.946
estExt_Genewise1_v1.C_LG_II2125
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (358 aa)
     •• 0.946

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
PLN02457706 PLN02457, PLN02457, phenylalanine ammonia-lyase 0.0
TIGR01226680 TIGR01226, phe_am_lyase, phenylalanine ammonia-lya 0.0
pfam00221477 pfam00221, Lyase_aromatic, Aromatic amino acid lya 0.0
cd00332444 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL 0.0
COG2986498 COG2986, HutH, Histidine ammonia-lyase [Amino acid 7e-95
PRK09367500 PRK09367, PRK09367, histidine ammonia-lyase; Provi 2e-90
TIGR01225506 TIGR01225, hutH, histidine ammonia-lyase 1e-80
TIGR03832507 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutas 2e-61
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 8e-17
>gnl|CDD|215251 PLN02457, PLN02457, phenylalanine ammonia-lyase Back     alignment and domain information 
 Score = 1512 bits (3917), Expect = 0.0
 Identities = 594/707 (84%), Positives = 647/707 (91%), Gaps = 3/707 (0%)

Query: 16  NGGTSSLGLCTG-TDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTA 74
            G  SS G C G  DPLNW  AA++LKGSHLDEVKRM+ EYR+PVVKL GE+LTI QV A
Sbjct: 1   VGAASSEGFCIGGADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLTIAQVAA 60

Query: 75  IAAHD-SGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQ 133
           +A     GV+VEL+E+ARA VKASSDWVM+SMMKGTDSYGVTTGFGATSHRRTKQGGALQ
Sbjct: 61  VARRGAGGVRVELSESARARVKASSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQ 120

Query: 134 KELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHN 193
           +ELIRFLN+GIFG G ES HTLP SATRAAMLVR+NTLLQGYSGIRFEILE ITK LN N
Sbjct: 121 RELIRFLNAGIFGTG-ESGHTLPASATRAAMLVRINTLLQGYSGIRFEILEAITKLLNAN 179

Query: 194 ITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFE 253
           +TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAV P+G+ +   EAF LAG+  GFFE
Sbjct: 180 VTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIEGGFFE 239

Query: 254 LQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLK 313
           LQPKEGLALVNGTAVGS LA+TVLF+AN+LA+++EVLSA+F EVM GKPEFTDHLTHKLK
Sbjct: 240 LQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLK 299

Query: 314 HHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRA 373
           HHPGQIEAAAIMEHILDGSSY+KAA+KLHE DPLQKPKQDRYALRTSPQWLGPQIEVIRA
Sbjct: 300 HHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRA 359

Query: 374 ATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSE 433
           ATK IEREINSVNDNPLIDV+R+KALHGGNFQGTPIGVSMDNTRLAIA+IGKL+FAQFSE
Sbjct: 360 ATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSE 419

Query: 434 LVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQD 493
           LVNDFYNNGLPSNL+GGRNPSLDYGFKGAEIAMASYCSELQ+LANPVTNHVQSAEQHNQD
Sbjct: 420 LVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQD 479

Query: 494 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLT 553
           VNSLGLIS+RKTAEAVDILKLMSST+LVALCQAIDLRHLEENLK+ VKNTVSQVAK+ LT
Sbjct: 480 VNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLT 539

Query: 554 MGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREK 613
            G NGELHPSRFCEKDL+KVVDRE VF+YIDDPCSA+YPLMQKLRQVLV+HAL NG+ EK
Sbjct: 540 TGANGELHPSRFCEKDLLKVVDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEK 599

Query: 614 NSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIG 673
           N++TS+F+KIGAFE+ELK  LPKEVE AR   E+G A I NRIKECRSYPLY+ VREE+G
Sbjct: 600 NASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIPNRIKECRSYPLYRFVREELG 659

Query: 674 TSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
           T LLTGEK RSPGEEFDKVF A+C+GKLIDP+LECLKEWNGAPLPIC
Sbjct: 660 TELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706

Length = 706
>gnl|CDD|130293 TIGR01226, phe_am_lyase, phenylalanine ammonia-lyase Back     alignment and domain information
>gnl|CDD|215800 pfam00221, Lyase_aromatic, Aromatic amino acid lyase Back     alignment and domain information
>gnl|CDD|176460 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236484 PRK09367, PRK09367, histidine ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase Back     alignment and domain information
>gnl|CDD|163544 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutase Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 722
PLN02457706 phenylalanine ammonia-lyase 100.0
KOG0222715 consensus Phenylalanine and histidine ammonia-lyas 100.0
TIGR01226680 phe_am_lyase phenylalanine ammonia-lyase. Members 100.0
COG2986498 HutH Histidine ammonia-lyase [Amino acid transport 100.0
TIGR01225506 hutH histidine ammonia-lyase. This enzyme deaminat 100.0
TIGR03832507 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members o 100.0
PRK09367500 histidine ammonia-lyase; Provisional 100.0
PF00221473 Lyase_aromatic: Aromatic amino acid lyase; InterPr 100.0
cd00332444 PAL-HAL Phenylalanine ammonia-lyase (PAL) and hist 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 99.78
PLN02972 763 Histidyl-tRNA synthetase 94.92
>PLN02457 phenylalanine ammonia-lyase Back     alignment and domain information 
Probab=100.00  E-value=6.9e-211  Score=1777.66  Aligned_cols=699  Identities=84%  Similarity=1.285  Sum_probs=676.7

Q ss_pred             cccCccccC-CCCCCHHHHHHHhccCcHHHHHHHHhhccCCeEEEcCCCcCHHHHHHHHhhC-CCCeEEeCHHHHHHHHH
Q 004955           19 TSSLGLCTG-TDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHD-SGVKVELAEAARAGVKA   96 (722)
Q Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Lti~~v~avA~~~-~~~~V~l~~~a~~ri~~   96 (722)
                      .+.+++|+. .|||||++||++|+|||+||||+|+++|++..|+|||.+||++||++||++. .+++|++++++++||++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~V~aVA~~~~~~~~V~ls~~a~~ri~~   83 (706)
T PLN02457          4 ASSEGFCIGGADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLTIAQVAAVARRGAGGVRVELSESARARVKA   83 (706)
T ss_pred             ccccccccCCCCCCcHHHHHHHhcCCcHHHHHHHHHHhcCceEEECCCCCCHHHHHHHHhcCCCCCeeeeCHHHHHHHHH
Confidence            344678985 6999999999999999999999999999999999999999999999999732 15899999999999999


Q ss_pred             HHHHHHHHHhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 004955           97 SSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS  176 (722)
Q Consensus        97 s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~S  176 (722)
                      |+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||+++.+. .|++||+++|||+|++|+|+|++|||
T Consensus        84 S~~~l~~~~~~g~~iYGVtTGfG~~~d~ri~~~~~LQ~nLirshaaGvg~~~~-~g~~lp~~~VRAaMliRlNsL~~G~S  162 (706)
T PLN02457         84 SSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGTGE-SGHTLPASATRAAMLVRINTLLQGYS  162 (706)
T ss_pred             HHHHHHHHHhcCCeeeeecCCCCCccCCchhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999986553 47999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCC--ccc
Q 004955          177 GIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGF--FEL  254 (722)
Q Consensus       177 GVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P--~~L  254 (722)
                      |||||++|+|.+|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+  |  ++|
T Consensus       163 GVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~--Pp~~~L  240 (706)
T PLN02457        163 GIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIE--GGFFEL  240 (706)
T ss_pred             CCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCC--CCCcCC
Confidence            999999999999999999999999999999999999999999999999988778899999999999999999  7  999


Q ss_pred             CCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChh
Q 004955          255 QPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY  334 (722)
Q Consensus       255 ~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~  334 (722)
                      +|||||||||||++|+|+|+++++||++|+.++++++||++|||+|++++|||++|++||||||+++|++||++|+||++
T Consensus       241 ~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa~ir~lL~GS~l  320 (706)
T PLN02457        241 QPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY  320 (706)
T ss_pred             CCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHHHHHHHhCcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHH
Q 004955          335 VKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMD  414 (722)
Q Consensus       335 ~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD  414 (722)
                      ++...+.|+.+|.++++||||||||+||||||++|+|++++++||+||||+|||||||+++++++|||||||+||+++||
T Consensus       321 ~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~amD  400 (706)
T PLN02457        321 MKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMD  400 (706)
T ss_pred             chhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHHH
Confidence            87766666667667899999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccc
Q 004955          415 NTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDV  494 (722)
Q Consensus       415 ~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv  494 (722)
                      ++++||++||+++|||+++|+||.+|+|||+||+++++||++||||++||+||||+|||++||||+|+|++|+++|||||
T Consensus       401 ~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~nED~  480 (706)
T PLN02457        401 NTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDV  480 (706)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCCcccc
Confidence            99999999999999999999999999999999997679999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHH
Q 004955          495 NSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVV  574 (722)
Q Consensus       495 ~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~  574 (722)
                      ||||++||||+.+++|++++|+||||+++|||+|||+++++|++.++++++++|+++++++.++++++.||+++|+.+++
T Consensus       481 ~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~~~~~~~l~~~~  560 (706)
T PLN02457        481 NSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSRFCEKDLLKVV  560 (706)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCccccccccCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhh
Q 004955          575 DREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIAN  654 (722)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n  654 (722)
                      +++++|+|+||||+.+|++|++++++|++|++++++++++..+++|++|..|++++++.|+++|+++|++|++|+.+++|
T Consensus       561 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~~~~~~~~~~~~  640 (706)
T PLN02457        561 DREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIPN  640 (706)
T ss_pred             hhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            99999999999999999999999999999999988888888889999999999999999999999999999999988999


Q ss_pred             hhhccccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955          655 RIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC  720 (722)
Q Consensus       655 ~il~~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~  720 (722)
                      +|++|||||||+|||+|||||||+|++++|||+||+|||+|||+|+++||||+||++|+|+|+|||
T Consensus       641 ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~  706 (706)
T PLN02457        641 RIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC  706 (706)
T ss_pred             hhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase Back     alignment and domain information
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01225 hutH histidine ammonia-lyase Back     alignment and domain information
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase Back     alignment and domain information
>PRK09367 histidine ammonia-lyase; Provisional Back     alignment and domain information
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4 Back     alignment and domain information
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
1w27_A714 Phenylalanine Ammonia-Lyase (Pal) From Petroselinum 0.0
2yii_A705 Manipulating The Regioselectivity Of Phenylalanine 1e-166
3nz4_A696 Crystal Structure Of A Taxus Phenylalanine Aminomut 1e-165
4baa_A705 Redesign Of A Phenylalanine Aminomutase Into A Beta 1e-165
1y2m_A716 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 1e-91
1t6j_A714 Crystal Structure Of Phenylalanine Ammonia Lyase Fr 2e-88
2nyf_A567 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 3e-74
2nyn_A565 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 2e-71
3czo_A539 Crystal Structure Of Double Mutant Phenylalanine Am 2e-67
3kdy_A537 X-Ray Crystal Structure Of Tyrosine Aminomutase Mut 8e-48
1gk3_A509 Histidine Ammonia-Lyase (Hal) Mutant D145a From Pse 1e-47
1gk2_A509 Histidine Ammonia-Lyase (Hal) Mutant F329g From Pse 2e-47
2qve_A526 Crystal Structure Of Sgtam Bound To Mechanism Based 3e-47
2rjr_A537 Substrate Mimic Bound To Sgtam Length = 537 3e-47
2ohy_A539 X-Ray Crystal Structure Of Tyrosine Aminomutase Fro 4e-47
3kdz_A537 X-Ray Crystal Structure Of A Tyrosine Aminomutase M 1e-46
2o78_A521 Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides 1e-46
2o6y_A521 Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides 1e-45
1gkm_A507 Histidine Ammonia-Lyase (Hal) From Pseudomonas Puti 2e-45
1gkj_A507 Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pse 5e-45
1eb4_A507 Histidine Ammonia-Lyase (Hal) Mutant F329a From Pse 2e-44
3unv_A547 Pantoea Agglomerans Phenylalanine Aminomutase Lengt 4e-44
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum Crispum Length = 714 Back     alignment and structure 
Iteration: 1

 Score = 1252 bits (3240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/693 (86%), Positives = 646/693 (93%), Gaps = 5/693 (0%)
Query: 29  DPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHD-SGVKVELA 87
           DPL W +AA+++ GSHLDEVK+M+ EYR+PVVKLGGE+LTI QV AI+A D SGV VEL+
Sbjct: 26  DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELS 85
Query: 88  EAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGN 147
           EAARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGN
Sbjct: 86  EAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGN 145
Query: 148 GTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITAS 207
           G  S +TLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTIT  
Sbjct: 146 G--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITX- 202
Query: 208 GDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTA 267
            DLVPLSYIAGLLTGRPNSKAVGP G +L+P EAF LAGV  GFFELQPKEGLALVNGTA
Sbjct: 203 -DLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTA 261
Query: 268 VGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEH 327
           VGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEH
Sbjct: 262 VGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEH 321
Query: 328 ILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVND 387
           ILDGS+YVKAAQKLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR++TKMIEREINSVND
Sbjct: 322 ILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVND 381
Query: 388 NPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNL 447
           NPLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAIA+IGKL+FAQFSELVNDFYNNGLPSNL
Sbjct: 382 NPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL 441
Query: 448 TGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAE 507
           +GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+E
Sbjct: 442 SGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSE 501
Query: 508 AVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCE 567
           AV+ILKLMS+TFLV LCQAIDLRHLEENLK+TVKNTVS VAKRVLTMGVNGELHPSRFCE
Sbjct: 502 AVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCE 561
Query: 568 KDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFE 627
           KDL++VVDREY+FAYIDDPCSA+YPLMQKLRQ LV+HAL NGD E+N +TSIFQKI  FE
Sbjct: 562 KDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFE 621
Query: 628 DELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGE 687
           DELK LLPKEVE AR  LESGN AI NRI+ECRSYPLYK VR+E+GT  LTGEKV SPGE
Sbjct: 622 DELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGE 681
Query: 688 EFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
           EF+KVF AM +G++IDP+LECL+ WNGAPLPIC
Sbjct: 682 EFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine Aminomutase: New Insights Into The Reaction Mechanism Of Mio-dependent Enzymes From Structure-guided Directed Evolution Length = 705 Back     alignment and structure
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase Length = 696 Back     alignment and structure
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta- Phenylalanine Ammonia Lyase Length = 705 Back     alignment and structure
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Yeast Rhododporidium Toruloides Length = 716 Back     alignment and structure
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From Rhodosporidium Toruloides Length = 714 Back     alignment and structure
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Nostoc Punctiforme Length = 567 Back     alignment and structure
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 565 Back     alignment and structure
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 539 Back     alignment and structure
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant Construct Length = 537 Back     alignment and structure
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based Inhibitor Length = 526 Back     alignment and structure
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam Length = 537 Back     alignment and structure
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From Streptomyces Globisporus Length = 539 Back     alignment and structure
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant Construct With Bound Ligand Length = 537 Back     alignment and structure
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides (his89phe Variant) Complexed With Cinnamic Acid Length = 521 Back     alignment and structure
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides Length = 521 Back     alignment and structure
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida Inhibited With L-Cysteine Length = 507 Back     alignment and structure
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pseudomonas Putida Length = 507 Back     alignment and structure
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From Pseudomonas Putida Length = 507 Back     alignment and structure
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase Length = 547 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 0.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 0.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 0.0
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 0.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 0.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 0.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 0.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Length = 714 Back     alignment and structure
 Score =  996 bits (2576), Expect = 0.0
 Identities = 599/717 (83%), Positives = 655/717 (91%), Gaps = 6/717 (0%)

Query: 6   ETCNGIKNDRNGGTSSLGLC-TGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGG 64
           E  NG   + +   + +  C    DPL W +AA+++ GSHLDEVK+M+ EYR+PVVKLGG
Sbjct: 2   ENGNGATTNGHVNGNGMDFCMKTEDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGG 61

Query: 65  ESLTIGQVTAIAAHD-SGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSH 123
           E+LTI QV AI+A D SGV VEL+EAARAGVKASSDWVMDSM KGTDSYGVTTGFGATSH
Sbjct: 62  ETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSH 121

Query: 124 RRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
           RRTKQGGALQKELIRFLN+GIFGNG++  +TLPHSATRAAMLVR+NTLLQGYSGIRFEIL
Sbjct: 122 RRTKQGGALQKELIRFLNAGIFGNGSD--NTLPHSATRAAMLVRINTLLQGYSGIRFEIL 179

Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
           E ITKFLN NITPCLPLRGTI  + DLVPLSYIAGLLTGRPNSKAVGP G +L+P EAF 
Sbjct: 180 EAITKFLNQNITPCLPLRGTI--TXDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFK 237

Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
           LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPE
Sbjct: 238 LAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPE 297

Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
           FTDHLTHKLKHHPGQIEAAAIMEHILDGS+YVKAAQKLHE+DPLQKPKQDRYALRTSPQW
Sbjct: 298 FTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQW 357

Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
           LGPQIEVIR++TKMIEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAIA+I
Sbjct: 358 LGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAI 417

Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
           GKL+FAQFSELVNDFYNNGLPSNL+GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH
Sbjct: 418 GKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 477

Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
           VQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV LCQAIDLRHLEENLK+TVKNT
Sbjct: 478 VQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNT 537

Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVD 603
           VS VAKRVLTMGVNGELHPSRFCEKDL++VVDREY+FAYIDDPCSA+YPLMQKLRQ LV+
Sbjct: 538 VSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVE 597

Query: 604 HALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYP 663
           HAL NGD E+N +TSIFQKI  FEDELK LLPKEVE AR  LESGN AI NRI+ECRSYP
Sbjct: 598 HALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECRSYP 657

Query: 664 LYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
           LYK VR+E+GT  LTGEKV SPGEEF+KVF AM +G++IDP+LECL+ WNGAPLPIC
Sbjct: 658 LYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Length = 705 Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Length = 716 Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Length = 547 Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Length = 526 Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Length = 521 Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Length = 565 Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Length = 507 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 100.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 100.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 100.0
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 100.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 100.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 100.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 100.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 100.0
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Back     alignment and structure
Probab=100.00  E-value=2.9e-202  Score=1712.07  Aligned_cols=694  Identities=86%  Similarity=1.315  Sum_probs=663.9

Q ss_pred             CccccC-CCCCCHHHHHHHhccCcHHHHHHHHhhccCCeEEEcCCCcCHHHHHHHHhhCC--CCeEEeCHHHHHHHHHHH
Q 004955           22 LGLCTG-TDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDS--GVKVELAEAARAGVKASS   98 (722)
Q Consensus        22 ~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Lti~~v~avA~~~~--~~~V~l~~~a~~ri~~s~   98 (722)
                      .++|++ .|||||++||++|++||+++|++|+++|+.+.|+|+|.+||++||++||++ .  +++|+|++++++||++|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Ltl~dv~aVa~~-~~~~~~v~ls~~a~~rI~~sr   96 (714)
T 1w27_A           18 MDFCMKTEDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISAR-DGSGVTVELSEAARAGVKASS   96 (714)
T ss_dssp             -------CCTTSHHHHHHTTCSCHHHHHHHHHHHHTCSEEEECSSCCCHHHHHHHHCC-SCCCCEEEECGGGHHHHHHHH
T ss_pred             cccccCCCCCCChHHhhhhccCCHHHHHHHHHHHhcCCeEEECCCCCCHHHHHHHHhc-CCCCCeEeeCHHHHHHHHHHH
Confidence            569987 499999999999999999999999999988999999999999999999972 2  589999999999999999


Q ss_pred             HHHHHHHhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcc
Q 004955           99 DWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI  178 (722)
Q Consensus        99 ~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGV  178 (722)
                      ++|++.+++|++|||||||||+++++++++..+||+||||+|+||++|.|+  +++||+++|||+|++|+|+|++|||||
T Consensus        97 ~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~Gv~G~~~--~~~lp~~~vRA~MllRlnsL~~G~SGV  174 (714)
T 1w27_A           97 DWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGS--DNTLPHSATRAAMLVRINTLLQGYSGI  174 (714)
T ss_dssp             HHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHHHHHHHHCCCCCCSSS--TTBCCHHHHHHHHHHHHHTTTTSCSCC
T ss_pred             HHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHHHHHHHHhCCcCCCCC--CCCCCHHHHHHHHHHHHHHHccCCCCC
Confidence            999999999999999999999999999999999999999999999953221  249999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCcc
Q 004955          179 RFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKE  258 (722)
Q Consensus       179 r~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKE  258 (722)
                      |||++|+|++|||+||+|+||++||||  |||+||||||++|+|||+++++.|+|+++|+.|||+++||+.+|++|+|||
T Consensus       175 r~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~~aGl~~~Pl~L~~KE  252 (714)
T 1w27_A          175 RFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKE  252 (714)
T ss_dssp             CHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHHHHTCSSSCCCCCTTH
T ss_pred             CHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHHHHHHcCCCCCCCCCCCcc
Confidence            999999999999999999999999999  999999999999999999877789999999999999999986699999999


Q ss_pred             chhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhh
Q 004955          259 GLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAA  338 (722)
Q Consensus       259 GLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~  338 (722)
                      ||||||||++|+|+|++++++|++|+.++++++||++|||+|++++|||++|++||||||+++|++||++|+||+++...
T Consensus       253 GLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~~ir~lL~gS~l~~~~  332 (714)
T 1w27_A          253 GLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAA  332 (714)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHHHHHHHHHHHHTCSSCCCC
T ss_pred             hhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHHHHHHHHHHhCccchhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             hhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHH
Q 004955          339 QKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRL  418 (722)
Q Consensus       339 ~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~l  418 (722)
                      .+.+..|+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||++|||++++
T Consensus       333 ~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvA~AmD~L~i  412 (714)
T 1w27_A          333 QKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRL  412 (714)
T ss_dssp             CSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCCccchHHHHHHHHHHH
Confidence            44444566667999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchh
Q 004955          419 AIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLG  498 (722)
Q Consensus       419 Ala~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma  498 (722)
                      |+++||+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||+||||+||||+|+|++|+++|||||||||
T Consensus       413 Ala~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~qEDhvSmg  492 (714)
T 1w27_A          413 AIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLG  492 (714)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTTTBSSCCCH
T ss_pred             HHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCccccCCcccccccH
Confidence            99999999999999999999999999999976789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhh
Q 004955          499 LISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREY  578 (722)
Q Consensus       499 ~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~  578 (722)
                      ++||||+.+++|++++|+||||+++|||+|||++++++++.++++++++++++++++.+|++++.||+++|+.+++++++
T Consensus       493 ~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~  572 (714)
T 1w27_A          493 LISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREY  572 (714)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCCSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCccccccccCHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhhhhhc
Q 004955          579 VFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKE  658 (722)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n~il~  658 (722)
                      +|+|++|||+.+||+|+|++++|++|++++++.+++..+++|++|..|+++++++++++|+++|++|++|++++|++|++
T Consensus       573 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~~f~~g~~~~~~~i~~  652 (714)
T 1w27_A          573 IFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEE  652 (714)
T ss_dssp             GGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGG
T ss_pred             HHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCccchhhc
Confidence            99999999999999999999999999998877777777889999999999999999999999999999998899999999


Q ss_pred             cccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955          659 CRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC  720 (722)
Q Consensus       659 ~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~  720 (722)
                      |||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus       653 ~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~  714 (714)
T 1w27_A          653 CRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC  714 (714)
T ss_dssp             STTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred             CCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 722
d1w27a_692 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {P 0.0
d1t6ja_678 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {F 0.0
d1gkma_509 a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseu 1e-148

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
d1w27a_692 Phenylalanine ammonia-lyase, PAL {Parsley (Petrose 100.0
d1t6ja_678 Phenylalanine ammonia-lyase, PAL {Fungi (Rhodospor 100.0
d1gkma_509 Histidine ammonia-lyase (HAL) {Pseudomonas putida 100.0