Citrus Sinensis ID: 004956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--
MASVSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFASPLSLLHYSTLI
cccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
cccccccccccccHHHEEccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccEEEEccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHccccccccHEEEHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccHHccccccHHcccHHHHHHHHHHHHHHccccEccccHHHHHHHcc
masvsqcppfgfsrkyyhvsedgscvrqssffqghavlnqGVGYSVILGFGAFFAVFTSFLVWLEKRyvgsrhtsEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVaweygvsgpfwyasgATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTasselgspsvMYNRLVEVAsksricqepvshagqscgpvngnykgSFLTILSSGGLVFGIINIVGnfgtvfvdngywvsaiaarpssthkgylLGGLVWFAVPFSLATSLGLgalaldlplteteashglvppaTAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIyrtyinpdasgeKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGrinldttgrnapmlaGNLVSILTGGAVHAVCSLlwpqnydwdttkQITMVEKekgelpvdefkEEKLMKAKAWIVKWGVGFTVVIALLWplltlpagefslgyFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAqrnkldfasplsllhystli
masvsqcppfgFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTAsselgspsVMYNRLVEVASKSRICQEPvshagqscgpvnGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEkgelpvdefKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKeaqrnkldfasplsllhystli
MASVSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLAsyihsvivhvvlvifvylvyTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFslatslglgalaldlpltETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANaigaiagtitgCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLekekaknkeaqrnkLDFASPLSLLHYSTLI
*********FGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLL******************************
***********FSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQI********************MKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFT***************************************************LSLLHYSTLI
MASVSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFASPLSLLHYSTLI
*****QCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVE*INIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFASPLSLLHYSTLI
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MASVSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFASPLSLLHYSTLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query722 2.2.26 [Sep-21-2011]
F4KD71704 Urea-proton symporter DUR yes no 0.966 0.991 0.768 0.0
Q7XBS0721 Urea-proton symporter DUR yes no 0.951 0.952 0.760 0.0
O94469664 Probable urea active tran yes no 0.880 0.957 0.425 1e-138
P33413735 Urea active transporter O yes no 0.742 0.729 0.438 1e-128
Q9URY6661 Probable urea active tran no no 0.885 0.966 0.374 1e-113
Q8TFG0673 Probable urea active tran no no 0.891 0.956 0.349 5e-98
O06493492 Osmoregulated proline tra yes no 0.202 0.296 0.264 0.0003
P31448571 Uncharacterized symporter N/A no 0.494 0.625 0.225 0.0005
P96169543 Sodium/glucose cotranspor no no 0.583 0.775 0.218 0.0007
>sp|F4KD71|DUR3_ARATH Urea-proton symporter DUR3 OS=Arabidopsis thaliana GN=DUR3 PE=1 SV=1 Back     alignment and function desciption
 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/705 (76%), Positives = 626/705 (88%), Gaps = 7/705 (0%)

Query: 4   VSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVW 63
           ++ CPPF FS KYY    DG C RQSSFF G  VL+QGVGY+VILGFGAFFAVFTSFLVW
Sbjct: 1   MATCPPFDFSTKYY--DGDGGCQRQSSFFGGTTVLDQGVGYAVILGFGAFFAVFTSFLVW 58

Query: 64  LEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA 123
           LEKRYVG+RHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAW+YGVSGPFWYA
Sbjct: 59  LEKRYVGARHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWQYGVSGPFWYA 118

Query: 124 SGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLL 183
           SGATIQVLLFGVMAIEIKRKA +AHTVCEIVKARWGTA H+VFL FC  TN++VTAMLLL
Sbjct: 119 SGATIQVLLFGVMAIEIKRKAPNAHTVCEIVKARWGTATHIVFLVFCLATNVVVTAMLLL 178

Query: 184 GGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVY 243
           GGSAVVNALTGVN+YAASFLIPLGV+VYTLAGGLKATFLASY+HSVIVHV LV+FV+LVY
Sbjct: 179 GGSAVVNALTGVNLYAASFLIPLGVVVYTLAGGLKATFLASYVHSVIVHVALVVFVFLVY 238

Query: 244 TASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFG 303
           T+S ELGSPSV+Y+RL ++ +KSR C EP+SH GQ+CGPV+GN++GS+LT+LSSGG VFG
Sbjct: 239 TSSKELGSPSVVYDRLKDMVAKSRSCTEPLSHHGQACGPVDGNFRGSYLTMLSSGGAVFG 298

Query: 304 IINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL 363
           +INIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL
Sbjct: 299 LINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL 358

Query: 364 PLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY 423
           P+++ EA  GLVPPATAIALMGK GS+LLLTMLFMAVTSAGSSELIAVSSL TYDIYRTY
Sbjct: 359 PISKDEADRGLVPPATAIALMGKSGSLLLLTMLFMAVTSAGSSELIAVSSLFTYDIYRTY 418

Query: 424 INPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFM 483
           INP A+G +ILK+SR  +LGFGCFMG LAV+LNKAGVSLGWMYLAMGVLIGSAV+PIAFM
Sbjct: 419 INPRATGRQILKISRCAVLGFGCFMGILAVVLNKAGVSLGWMYLAMGVLIGSAVIPIAFM 478

Query: 484 LLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGG 543
           LLW KANA GAI G  +GC+ GIITWL+    +YGR++LD+TG+N PMLAGNLV+ILTGG
Sbjct: 479 LLWSKANAFGAILGATSGCVFGIITWLTTAKTQYGRVDLDSTGKNGPMLAGNLVAILTGG 538

Query: 544 AVHAVCSLLWPQNYDWDTTKQITMVE-----KEKGELPVDEFKEEKLMKAKAWIVKWGVG 598
            +HAVCSL+ PQNYDW TT++I +VE      E  ++P +E +EEKL +AKAWIVKWG+ 
Sbjct: 539 LIHAVCSLVRPQNYDWSTTREIKVVEAYASGDEDVDVPAEELREEKLRRAKAWIVKWGLV 598

Query: 599 FTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVG 658
           FT++I ++WP+L+LPA  FS GYF FWA+VAIAWGTIGS VII LPL+ESW+TIKSVC+G
Sbjct: 599 FTILIVVIWPVLSLPARVFSRGYFWFWAIVAIAWGTIGSIVIIGLPLVESWDTIKSVCMG 658

Query: 659 MFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQ 703
           MFTND +M++++++N +L+ + +A+PEAE +YLLE EK K  + +
Sbjct: 659 MFTNDRVMKKLDDLNHRLRALTMAVPEAEKIYLLELEKTKKNDEE 703
High-affinity urea-proton symporter involved in the active transport of urea across the plasma membrane into root cells. May play an important role in urea uptake by plant cells at low external urea concentrations.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XBS0|DUR3_ORYSJ Urea-proton symporter DUR3 OS=Oryza sativa subsp. japonica GN=DUR3 PE=1 SV=1 Back     alignment and function description
>sp|O94469|DUR31_SCHPO Probable urea active transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dur3-1 PE=3 SV=1 Back     alignment and function description
>sp|P33413|DUR3_YEAST Urea active transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUR3 PE=1 SV=2 Back     alignment and function description
>sp|Q9URY6|DUR33_SCHPO Probable urea active transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dur3-3 PE=3 SV=1 Back     alignment and function description
>sp|Q8TFG0|DUR32_SCHPO Probable urea active transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dur3-2 PE=3 SV=1 Back     alignment and function description
>sp|O06493|OPUE_BACSU Osmoregulated proline transporter OS=Bacillus subtilis (strain 168) GN=opuE PE=3 SV=1 Back     alignment and function description
>sp|P31448|YIDK_ECOLI Uncharacterized symporter YidK OS=Escherichia coli (strain K12) GN=yidK PE=1 SV=1 Back     alignment and function description
>sp|P96169|SGLT_VIBPH Sodium/glucose cotransporter OS=Vibrio parahaemolyticus GN=sglT PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
225427484710 PREDICTED: probable urea active transpor 0.954 0.970 0.885 0.0
356510355714 PREDICTED: probable urea active transpor 0.970 0.981 0.864 0.0
357484591711 Urea active transporter-like protein [Me 0.976 0.991 0.861 0.0
255557687720 sodium/proline symporter, putative [Rici 0.976 0.979 0.800 0.0
449456915711 PREDICTED: urea-proton symporter DUR3-li 0.969 0.984 0.794 0.0
334188207704 solute:sodium symporter [Arabidopsis tha 0.966 0.991 0.768 0.0
9758728694 urea active transporter-like protein [Ar 0.952 0.991 0.757 0.0
242095256729 hypothetical protein SORBIDRAFT_10g00832 0.961 0.951 0.758 0.0
302781086679 hypothetical protein SELMODRAFT_172808 [ 0.908 0.966 0.799 0.0
115483686721 Os10g0580400 [Oryza sativa Japonica Grou 0.951 0.952 0.760 0.0
>gi|225427484|ref|XP_002263043.1| PREDICTED: probable urea active transporter 1 [Vitis vinifera] gi|296088481|emb|CBI37472.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1241 bits (3211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/689 (88%), Positives = 661/689 (95%)

Query: 4   VSQCPPFGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFTSFLVW 63
           ++ CPPF FS KYY VS+ G CVRQSSFFQG AVLNQGVGYSVILGFGAFFAVFTSFLVW
Sbjct: 1   MASCPPFEFSSKYYQVSDGGGCVRQSSFFQGKAVLNQGVGYSVILGFGAFFAVFTSFLVW 60

Query: 64  LEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA 123
           LEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAW+YGVSGPFWYA
Sbjct: 61  LEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWQYGVSGPFWYA 120

Query: 124 SGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLL 183
           SGATIQVLLFG+MAIEIKRKA HAHTVCEIVKARWGTAAH+VFL FCF+TNIIVTAMLLL
Sbjct: 121 SGATIQVLLFGIMAIEIKRKAPHAHTVCEIVKARWGTAAHIVFLTFCFMTNIIVTAMLLL 180

Query: 184 GGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVY 243
           GGSAVVNALTGVNIYAASFLIPLGVIVYT+AGGLKATFLASYIHSVIVHVVLVIFVYLVY
Sbjct: 181 GGSAVVNALTGVNIYAASFLIPLGVIVYTIAGGLKATFLASYIHSVIVHVVLVIFVYLVY 240

Query: 244 TASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFG 303
           TAS+ELGSP+V+Y RL+EVA KSR+CQEP SH GQ+CGPVNGNYKGS+LT+LSSGGLVFG
Sbjct: 241 TASNELGSPNVVYKRLMEVAGKSRMCQEPSSHDGQACGPVNGNYKGSYLTMLSSGGLVFG 300

Query: 304 IINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL 363
           IINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL
Sbjct: 301 IINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL 360

Query: 364 PLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY 423
           P+TE+EASHGLVPPATAIALMGK GSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY
Sbjct: 361 PITESEASHGLVPPATAIALMGKAGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY 420

Query: 424 INPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFM 483
           INP+ASG+KIL+VSR V+LGFGCFMG LAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFM
Sbjct: 421 INPNASGKKILQVSRMVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFM 480

Query: 484 LLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGG 543
           LLWRKANA GAI GT+TGC+LG+ITWLSVT+IEYG++NLDTTGRNAPMLAGNLVSILTGG
Sbjct: 481 LLWRKANAFGAILGTVTGCILGVITWLSVTSIEYGQVNLDTTGRNAPMLAGNLVSILTGG 540

Query: 544 AVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVI 603
           AVHAVCSLLWPQNYDWDTT+QIT VEKEK ELP +EF+EEKL++AKAWIVKWGVGFT+VI
Sbjct: 541 AVHAVCSLLWPQNYDWDTTRQITTVEKEKSELPAEEFREEKLIRAKAWIVKWGVGFTIVI 600

Query: 604 ALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGMFTND 663
            +LWPLL+LP G+FS GYFTFWA++A+AWGTIGSAVIIALPL+ESWETI++V +GMFTND
Sbjct: 601 VILWPLLSLPIGKFSKGYFTFWAIIAVAWGTIGSAVIIALPLVESWETIQNVFLGMFTND 660

Query: 664 LLMERVEEINIKLQTIMLAIPEAENMYLL 692
            LME++EE+NIKLQ+I+L+IPEAE  YL+
Sbjct: 661 RLMEKIEEMNIKLQSIILSIPEAERTYLM 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510355|ref|XP_003523904.1| PREDICTED: probable urea active transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357484591|ref|XP_003612583.1| Urea active transporter-like protein [Medicago truncatula] gi|355513918|gb|AES95541.1| Urea active transporter-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255557687|ref|XP_002519873.1| sodium/proline symporter, putative [Ricinus communis] gi|223540919|gb|EEF42477.1| sodium/proline symporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449456915|ref|XP_004146194.1| PREDICTED: urea-proton symporter DUR3-like [Cucumis sativus] gi|449517941|ref|XP_004166002.1| PREDICTED: urea-proton symporter DUR3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334188207|ref|NP_199351.2| solute:sodium symporter [Arabidopsis thaliana] gi|403399374|sp|F4KD71.1|DUR3_ARATH RecName: Full=Urea-proton symporter DUR3; Short=AtDUR3; AltName: Full=High-affinity urea active transporter DUR3 gi|332007859|gb|AED95242.1| solute:sodium symporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9758728|dbj|BAB09166.1| urea active transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242095256|ref|XP_002438118.1| hypothetical protein SORBIDRAFT_10g008320 [Sorghum bicolor] gi|241916341|gb|EER89485.1| hypothetical protein SORBIDRAFT_10g008320 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|302781086|ref|XP_002972317.1| hypothetical protein SELMODRAFT_172808 [Selaginella moellendorffii] gi|300159784|gb|EFJ26403.1| hypothetical protein SELMODRAFT_172808 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|115483686|ref|NP_001065513.1| Os10g0580400 [Oryza sativa Japonica Group] gi|75296164|sp|Q7XBS0.1|DUR3_ORYSJ RecName: Full=Urea-proton symporter DUR3; Short=OsDUR3; AltName: Full=High-affinity urea active transporter DUR3 gi|12039384|gb|AAG46170.1|AC018727_22 putative urea active transport protein [Oryza sativa Japonica Group] gi|31433710|gb|AAP55189.1| SSS sodium solute transporter superfamily protein, expressed [Oryza sativa Japonica Group] gi|39545690|gb|AAR27948.1| DUR3 [Oryza sativa Japonica Group] gi|113640045|dbj|BAF27350.1| Os10g0580400 [Oryza sativa Japonica Group] gi|125575827|gb|EAZ17111.1| hypothetical protein OsJ_32609 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
UNIPROTKB|Q7XBS0721 DUR3 "Urea-proton symporter DU 0.951 0.952 0.705 4e-264
UNIPROTKB|G5EI36687 MGCH7_ch7g226 "Urea active tra 0.833 0.876 0.427 1.2e-129
ASPGD|ASPL0000059555693 ureA [Emericella nidulans (tax 0.835 0.870 0.425 2.8e-128
ASPGD|ASPL0000068046699 AN7373 [Emericella nidulans (t 0.740 0.765 0.439 3.1e-123
POMBASE|SPBC23G7.13c664 SPBC23G7.13c "urea transporter 0.876 0.953 0.395 1.1e-121
SGD|S000001008735 DUR3 "Plasma membrane transpor 0.742 0.729 0.417 1.3e-111
CGD|CAL0001976725 DUR31 [Candida albicans (taxid 0.720 0.717 0.423 6.3e-110
UNIPROTKB|Q59VF2725 DUR31 "Potential urea active t 0.720 0.717 0.423 6.3e-110
POMBASE|SPAC869.03c661 SPAC869.03c "urea transporter 0.867 0.947 0.357 6.2e-101
ASPGD|ASPL0000049523680 AN2598 [Emericella nidulans (t 0.839 0.891 0.328 1.2e-90
UNIPROTKB|Q7XBS0 DUR3 "Urea-proton symporter DUR3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 2541 (899.5 bits), Expect = 4.0e-264, P = 4.0e-264
 Identities = 489/693 (70%), Positives = 557/693 (80%)

Query:     1 MASVSQCPP--FGFSRKYYHVSEDGSCVRQSSFFQGHAVLNQGVGYSVILGFGAFFAVFT 58
             MAS   CPP   GF  +YY V  +G C R  S+F G  VL Q VGY+V+LGFGAFFA+FT
Sbjct:     1 MAS-GVCPPAELGFGAEYYSVV-NGVCSRAGSYFGGRPVLTQAVGYAVVLGFGAFFALFT 58

Query:    59 SFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSG 118
             SFLVWLEKRYVGS+HTSEWFNTAGR+VKTGLIASVIVSQWTWAATILQSSNVAW+YGVSG
Sbjct:    59 SFLVWLEKRYVGSQHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQSSNVAWQYGVSG 118

Query:   119 PFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVT 178
             PFWYASGATIQVLLFGVMAIEIKRKA +AHTVCEIV+ARWGT AHLVFL FC LTN+IVT
Sbjct:   119 PFWYASGATIQVLLFGVMAIEIKRKAPNAHTVCEIVRARWGTPAHLVFLTFCLLTNVIVT 178

Query:   179 AMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLAXXXXXXXXXXXXXXX 238
             AMLLLGGSAVVNALTGVN+YAASFLIPLGV+VYTLAGGLKATFLA               
Sbjct:   179 AMLLLGGSAVVNALTGVNVYAASFLIPLGVVVYTLAGGLKATFLASYIHSVVVHAVLVVF 238

Query:   239 XXXXXTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSG 298
                  T+SS+LGSP V+Y+RL+ VAS +R C   +S  GQ+CGPV GN+KGS+LT+LSSG
Sbjct:   239 VFLVYTSSSKLGSPRVVYDRLMAVASAARDCSADLSRNGQACGPVAGNFKGSYLTMLSSG 298

Query:   299 GLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFXXXXXXXXXX 358
             GLVFGIINIVGNFGTVFVDNGYW+SAIAARPSSTHKGYLLGGLVWFAVPF          
Sbjct:   299 GLVFGIINIVGNFGTVFVDNGYWMSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGA 358

Query:   359 XXXXXXXXETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYD 418
                       EA+ GLVPPATA ALMGK GS+LLLTMLFMAVTSAGS+EL+AVSSLCTYD
Sbjct:   359 LALDLPLTAAEAAKGLVPPATATALMGKSGSVLLLTMLFMAVTSAGSAELVAVSSLCTYD 418

Query:   419 IYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVL 478
             IYRTY+NP ASG++IL+VSRAV+LGFGCFMG LAV+LN AGVSLGWMYLAMGV++GSAV+
Sbjct:   419 IYRTYLNPGASGKQILRVSRAVVLGFGCFMGVLAVVLNVAGVSLGWMYLAMGVIVGSAVI 478

Query:   479 PIAFMLLWRKANXXXXXXXXXXXCLLGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVS 538
             PIA +LLW KAN           C LG+  WL+V  ++YGR+NLDTTGRNAPMLAGNLVS
Sbjct:   479 PIALLLLWSKANAVGAMGGAVSGCALGVAVWLTVAKVQYGRVNLDTTGRNAPMLAGNLVS 538

Query:   539 ILTGGAVHAVCSLLWPQNYDWDTTKQ-ITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGV 597
             IL GGAVHA CSLL PQ+YDW T+++ IT VE     L  DE KEE+L+ AK WIV+WG+
Sbjct:   539 ILVGGAVHAACSLLRPQHYDWGTSREMITTVESVHAALD-DELKEERLVHAKRWIVRWGL 597

Query:   598 GFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCV 657
              FT VI + WP L+LPA  +SLGYFT WA VAIAWGT+GS VII LP+ ESW TI  VC 
Sbjct:   598 VFTAVIVVAWPALSLPARRYSLGYFTLWAAVAIAWGTVGSVVIILLPVAESWTTITKVCA 657

Query:   658 GMFTNDLLMERVEEINIKLQTIMLAIPEAENMY 690
             GMFTND + +R++++N++L+ IM A+PEAE  Y
Sbjct:   658 GMFTNDAVYDRLDDVNLRLRAIMGAMPEAEKRY 690
GO:0005886 "plasma membrane" evidence=IDA
GO:0015204 "urea transmembrane transporter activity" evidence=IMP
GO:0071918 "urea transmembrane transport" evidence=IMP
UNIPROTKB|G5EI36 MGCH7_ch7g226 "Urea active transporter" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059555 ureA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068046 AN7373 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC23G7.13c SPBC23G7.13c "urea transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000001008 DUR3 "Plasma membrane transporter for both urea and polyamines" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001976 DUR31 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59VF2 DUR31 "Potential urea active transport protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPAC869.03c SPAC869.03c "urea transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049523 AN2598 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O94469DUR31_SCHPONo assigned EC number0.42540.88080.9578yesno
Q7XBS0DUR3_ORYSJNo assigned EC number0.76080.95150.9528yesno
F4KD71DUR3_ARATHNo assigned EC number0.76870.96670.9914yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003175001
SubName- Full=Chromosome chr2 scaffold_140, whole genome shotgun sequence; (700 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
cd11476493 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotran 0.0
TIGR00813407 TIGR00813, sss, transporter, SSS family 1e-53
COG0591493 COG0591, PutP, Na+/proline symporter [Amino acid t 1e-48
cd10322455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 7e-38
pfam00474406 pfam00474, SSF, Sodium:solute symporter family 3e-18
cd11477495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 2e-17
cd11480484 cd11480, SLC5sbd_u4, Uncharacterized bacterial sol 5e-17
cd11478495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 4e-15
cd11475464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 3e-14
COG4147529 COG4147, DhlC, Predicted symporter [General functi 8e-12
TIGR02119471 TIGR02119, panF, sodium/pantothenate symporter 4e-11
COG4145473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 3e-10
cd11479454 cd11479, SLC5sbd_u3, Uncharacterized bacterial sol 3e-10
cd11494481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 4e-09
cd11495477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 1e-08
cd11474464 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent c 1e-08
PRK09442483 PRK09442, panF, sodium/panthothenate symporter; Pr 1e-07
TIGR03648552 TIGR03648, Na_symport_lg, probable sodium:solute s 1e-07
cd10328472 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfam 3e-06
TIGR02121487 TIGR02121, Na_Pro_sym, sodium/proline symporter 9e-06
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 2e-05
cd10325523 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na 3e-05
cd11489604 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporte 5e-04
PRK10484523 PRK10484, PRK10484, putative transporter; Provisio 7e-04
cd11486635 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte 7e-04
PRK15419502 PRK15419, PRK15419, proline:sodium symporter PutP; 8e-04
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 0.002
cd11494481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 0.004
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  640 bits (1654), Expect = 0.0
 Identities = 307/510 (60%), Positives = 375/510 (73%), Gaps = 17/510 (3%)

Query: 44  YSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAAT 103
           Y V+LG GA FA+   F+  L KRY G + +SE F TAGR+V TGL A+ IVS WTWAAT
Sbjct: 1   YGVVLGLGALFALLMVFITRLLKRYRGKKQSSEEFMTAGRSVGTGLTAASIVSSWTWAAT 60

Query: 104 ILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAH 163
           +LQS+ VA++YGVSGPFWYASGA +Q+LLF  +AI IKRKA +AHT+ EIV+AR+G AAH
Sbjct: 61  LLQSATVAYQYGVSGPFWYASGAALQILLFAPLAIRIKRKAPNAHTLLEIVRARYGKAAH 120

Query: 164 LVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLA 223
           LVFL F   TN IV AMLLLGGSAVVNALTG+NI AASFLIPLGV++YTL GGL+ATFL 
Sbjct: 121 LVFLFFALFTNFIVLAMLLLGGSAVVNALTGMNIVAASFLIPLGVLLYTLFGGLRATFLT 180

Query: 224 SYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPV 283
            YIH+VI+ ++L+IF + VYT SS++GSPS +Y+ LVE A                  PV
Sbjct: 181 DYIHTVIILIILLIFAFAVYT-SSDIGSPSKVYDLLVEAAPDL---------------PV 224

Query: 284 NGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVW 343
            GN +GS+LT  S  GL+FGIINIVGNFGTVF+D GYW  AIAA+PS+  KGY LGGL W
Sbjct: 225 EGN-QGSYLTFKSKAGLIFGIINIVGNFGTVFLDQGYWQRAIAAKPSAAVKGYFLGGLAW 283

Query: 344 FAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSA 403
           FA+PF LAT LGL ALAL L  T  E S GLV P  A AL+GKGG+  +L +LFMAVTS 
Sbjct: 284 FAIPFLLATFLGLAALALGLNPTFEEVSAGLVLPYVAAALLGKGGAAAVLILLFMAVTST 343

Query: 404 GSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLG 463
            S+ELIAVSS+ TYDIYRTYINP+A+G+++L+VSR  ++GFG FMG LAV LN  G+SLG
Sbjct: 344 ASAELIAVSSIVTYDIYRTYINPNATGKQLLRVSRIAVIGFGLFMGGLAVGLNYIGISLG 403

Query: 464 WMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLD 523
           W+YL MG+LIGSAV P+A  L WR+     A+   I G   G+  WL      YG +N+D
Sbjct: 404 WLYLFMGILIGSAVFPVALGLYWRRLTGAAAVVSPIAGLAAGLAVWLVTAKSYYGEVNVD 463

Query: 524 TTGRNAPMLAGNLVSILTGGAVHAVCSLLW 553
           TTG N PMLAGNLV++ + G V  + SL++
Sbjct: 464 TTGSNYPMLAGNLVALFSPGIVSVLLSLIF 493

Dur3 is the yeast plasma membrane urea transporter. Saccharomyces cerevisiae DUR3 also transports polyamine. The polyamine uptake of S. cerevisiae DUR3 is activated upon its phosphorylation by polyamine transport protein kinase 2 (PTK2). S. cerevisiae DUR3 also appears to play a role in regulating the cellular boron concentration. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 493
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain Back     alignment and domain information
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain Back     alignment and domain information
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 722
KOG2348667 consensus Urea transporter [Amino acid transport a 100.0
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 100.0
PRK15419502 proline:sodium symporter PutP; Provisional 100.0
PRK10484523 putative transporter; Provisional 100.0
PRK09442483 panF sodium/panthothenate symporter; Provisional 100.0
PRK09395551 actP acetate permease; Provisional 100.0
PRK12488549 acetate permease; Provisional 100.0
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 100.0
COG0591493 PutP Na+/proline symporter [Amino acid transport a 100.0
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 100.0
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 100.0
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 100.0
TIGR00813407 sss transporter, SSS family. have different number 100.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 100.0
COG4147529 DhlC Predicted symporter [General function predict 100.0
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 100.0
COG4146571 Predicted symporter [General function prediction o 100.0
KOG3761591 consensus Choline transporter [Lipid transport and 99.97
PRK00701439 manganese transport protein MntH; Reviewed 98.9
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.52
PRK11017404 codB cytosine permease; Provisional 98.47
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.45
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 98.43
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.24
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.23
PRK11375484 allantoin permease; Provisional 98.19
TIGR00814397 stp serine transporter. The HAAAP family includes 97.97
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 97.97
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 97.91
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.9
PRK15049499 L-asparagine permease; Provisional 97.88
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.88
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 97.82
TIGR00909429 2A0306 amino acid transporter. 97.81
PRK10746461 putative transport protein YifK; Provisional 97.79
PRK10249458 phenylalanine transporter; Provisional 97.78
PRK10238456 aromatic amino acid transporter; Provisional 97.76
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.62
COG1457442 CodB Purine-cytosine permease and related proteins 97.61
PRK11387471 S-methylmethionine transporter; Provisional 97.59
TIGR00837381 araaP aromatic amino acid transport protein. aroma 97.57
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.57
PRK09950506 putative transporter; Provisional 97.56
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 97.54
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 97.48
TIGR00913478 2A0310 amino acid permease (yeast). 97.42
PRK10655438 potE putrescine transporter; Provisional 97.41
PRK11021410 putative transporter; Provisional 97.41
PRK15132403 tyrosine transporter TyrP; Provisional 97.4
PRK10483414 tryptophan permease; Provisional 97.4
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 97.33
COG3949349 Uncharacterized membrane protein [Function unknown 97.33
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.32
PRK09928679 choline transport protein BetT; Provisional 97.22
TIGR00908442 2A0305 ethanolamine permease. The three genes used 97.17
COG0833541 LysP Amino acid transporters [Amino acid transport 97.16
TIGR00842453 bcct choline/carnitine/betaine transport. properti 97.08
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.07
PRK15433439 branched-chain amino acid transport system 2 carri 97.05
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.04
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 96.99
TIGR00930 953 2a30 K-Cl cotransporter. 96.97
TIGR00906557 2A0303 cationic amino acid transport permease. 96.95
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.9
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.89
TIGR00912359 2A0309 spore germination protein (amino acid perme 96.88
COG0814415 SdaC Amino acid permeases [Amino acid transport an 96.8
PRK10580457 proY putative proline-specific permease; Provision 96.65
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 96.62
PRK10644445 arginine:agmatin antiporter; Provisional 96.61
PRK10197446 gamma-aminobutyrate transporter; Provisional 96.57
PF03845320 Spore_permease: Spore germination protein; InterPr 96.54
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.49
COG1292537 BetT Choline-glycine betaine transporter [Cell env 96.42
PRK09664415 tryptophan permease TnaB; Provisional 96.39
PRK11357445 frlA putative fructoselysine transporter; Provisio 96.19
PRK10836489 lysine transporter; Provisional 96.02
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 95.5
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 95.45
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 95.25
PRK15015701 carbon starvation protein A; Provisional 93.77
TIGR00911501 2A0308 L-type amino acid transporter. 92.57
KOG1286554 consensus Amino acid transporters [Amino acid tran 92.18
PRK13629443 threonine/serine transporter TdcC; Provisional 91.96
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.64
KOG2466572 consensus Uridine permease/thiamine transporter/al 91.33
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 90.95
TIGR00907482 2A0304 amino acid permease (GABA permease). 90.07
PTZ00206467 amino acid transporter; Provisional 90.05
COG0531466 PotE Amino acid transporters [Amino acid transport 89.38
COG1966575 CstA Carbon starvation protein, predicted membrane 89.22
PLN02776341 prenyltransferase 89.01
PRK15238496 inner membrane transporter YjeM; Provisional 85.25
KOG1304449 consensus Amino acid transporters [Amino acid tran 85.08
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-134  Score=1055.53  Aligned_cols=639  Identities=52%  Similarity=0.868  Sum_probs=607.8

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004956           33 QGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAW  112 (722)
Q Consensus        33 ~~~~~l~~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay  112 (722)
                      |.+|+|+|++||++++|+|+.|+++|++.+|+.|||.++++++|+|.+||||+++++++++++|+|+|++|++.+++.+|
T Consensus         1 ~~~~~L~Qg~GY~IVlGlG~~FA~~mi~vt~llKry~~e~~tsE~FtTA~rsVkTGLiasaVVSsWtW~sTlLtSa~~ay   80 (667)
T KOG2348|consen    1 MTETVLNQGVGYGIVLGLGAAFAIVMILVTYLLKRYVGEVQTSEHFTTASRSVKTGLIASAVVSSWTWASTLLTSAGKAY   80 (667)
T ss_pred             CCcccccCCcceEEEEechHHHHHHHHHHHHHHHHHhccccchhhhcccccccccceehhhhhhhhhhhHHHHhhccchh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004956          113 EYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNAL  192 (722)
Q Consensus       113 ~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l  192 (722)
                      +||++|++||+.|+++|+++|..+++++||++||+||+.|+++.|||+..|.++.++++.+|++++++.+.|++++++.+
T Consensus        81 qyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaMLL~gGSavisal  160 (667)
T KOG2348|consen   81 QYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTAMLLLGGSAVISAL  160 (667)
T ss_pred             hhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHHHhCchhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCC
Q 004956          193 TGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEP  272 (722)
Q Consensus       193 ~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~  272 (722)
                      ||||..++++++|+.|++||++||+||+++||++|+++++++++++.+.+|.+++++|+|++++|.+.|..+.       
T Consensus       161 TGmn~vAa~FLlPlGVvvYTl~GGlKaTFLtdy~HtvIv~iillvf~f~vYtss~~iGSp~kvYDllke~~~~-------  233 (667)
T KOG2348|consen  161 TGMNTVAACFLLPLGVVVYTLFGGLKATFLTDYTHTVIVYIILLVFLFVVYTSSKHIGSPGKVYDLLKEASKT-------  233 (667)
T ss_pred             ccchhhhhhheeeeeEEEEEecCcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHHHhc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998754       


Q ss_pred             CCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCChhhhHHHHHHHHHHHHHHHHHHH
Q 004956          273 VSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLAT  352 (722)
Q Consensus       273 ~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~~a~k~~~l~~~l~~~ip~~~~~  352 (722)
                              +|.+||.+|+|+||.|..+.+|++++++|+||++|+|++||||+++|||.++.|+|.+||+.||.+||.+.+
T Consensus       234 --------~Pv~Gn~qGsYlTm~s~~~~i~~iinliGnFgTVFvDngYw~kAIaA~PasalkgY~lGGLaWfaVP~~~at  305 (667)
T KOG2348|consen  234 --------HPVDGNYQGSYLTMTSRDAAIFGIINLIGNFGTVFVDNGYWQKAIAAKPASALKGYFLGGLAWFAVPWLMAT  305 (667)
T ss_pred             --------CCCCCcccceEEEEEccCceEEEEEEeccCceeEEEcCchhHHHhccCchhhccchhhcchHHHhHHHHHHH
Confidence                    899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---------CCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 004956          353 SLGLGALALDL---------PLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY  423 (722)
Q Consensus       353 ~iGl~a~al~~---------~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~  423 (722)
                      .+|+.+.++++         +++..|++.++++|+.+..+|++.++.+.+.++|||++|..|++++++||++||||||.|
T Consensus       306 tmgL~~Lalen~p~fptyPdp~ss~q~s~Glvlp~aaiAlMGk~Ga~a~llmlFMAvTSA~SaELIAvSSvfTYDIYr~Y  385 (667)
T KOG2348|consen  306 TMGLSCLALENNPVFPTYPDPVSSKQVSEGLVLPYAAIALMGKNGAAAGLLMLFMAVTSATSAELIAVSSVFTYDIYRNY  385 (667)
T ss_pred             HhhhhhheeccCCCCCCCCCccchhhhccCCCChHHHHHHhcccchHHHHHHHHHHHhcccchhheeehhhhehHHHHhh
Confidence            99999999972         366678899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHH
Q 004956          424 INPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCL  503 (722)
Q Consensus       424 i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~  503 (722)
                      +||++++||+++.+|.+++++++.+..+|..+++.+++++|++.++|++++|.+.|+.+.++|||+|+.|++.|...|.+
T Consensus       386 i~PrAsGkell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~pit~~l~~kkmn~~~~iv~~~lG~i  465 (667)
T KOG2348|consen  386 IRPRASGKELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVFPITLTLLWKKMNKYGAIVGPPLGSI  465 (667)
T ss_pred             cCCccCcceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhHhHHHHHHHHHhhhhhEeecCcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecc-cCCCCChhhhhhhhhcccccCCC--CCchh
Q 004956          504 LGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLL-WPQNYDWDTTKQITMVEKEKGEL--PVDEF  580 (722)
Q Consensus       504 ~~i~~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSll-tp~~~d~~~~~~~~~~~~~~~~~--~~~~~  580 (722)
                      .+++.|+..++..++..++++++.+.|++.||+++++.+.+..++.|++ .|+|+||++++|+..++++...+  .+.|+
T Consensus       466 ~~IitWl~~ak~~y~~~~vdtT~~n~PmlaGNlv~llspaiyi~ilsy~f~pqn~D~n~l~e~~~v~~~a~~~E~~d~e~  545 (667)
T KOG2348|consen  466 TGIITWLVSAKKQYKNLTVDTTGLNTPMLAGNLVGLLSPAIYIVILSYFFPPQNYDWNNLNEIFVVGDDAEAEEIVDAEQ  545 (667)
T ss_pred             hhhhhhhhhhhhccceeEEecccCCCccccchhhhhhchhhheeeeeEecCCccCchhhhhheEEeccccccchhcchhH
Confidence            9999999999988999999999999999999999999999999999987 58999999999999887654432  23456


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhheeccCcccccC-CCCccchhHHHHHHHHHHHHHhhhheeeccccchHHHHHHHhhc
Q 004956          581 KEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAG-EFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGM  659 (722)
Q Consensus       581 ~~~~l~~~~k~~~~~~~~~~~~~~v~~p~~~~~~~-~fs~~~f~~wv~~~~~w~~~~~~~~~~~p~~e~~~~~~~~~~~~  659 (722)
                      |+++++|++|+...++++++++++|+||+||||++ ||||+||||||+|.|||.|++++.|++||||||||+|+.++|||
T Consensus       546 ek~kl~Ra~~i~~~~~li~t~~~viiwP~pmygskyIFSk~fF~gWviV~iiW~~~~a~~i~~~PL~E~rd~I~~v~~~m  625 (667)
T KOG2348|consen  546 EKKKLNRALRIGIFVSLIITFAFVIIWPLPMYGSKYIFSKLFFTGWVIVIIIWTFIAAFAITIYPLWESRDTIYYVCKGM  625 (667)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHhhccccccCccceeechhhhHHHHHHHHHHHHHHHheEeeeeeeccccHHHHHHHH
Confidence            77799999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhHHhhhhhhhhhhcCchhh
Q 004956          660 FTNDLLMERVEEINIKLQTIMLAIPEAE  687 (722)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (722)
                      +.++ .+++.++..++++...++.++.+
T Consensus       626 ~~~~-~~~~~~d~~~~l~v~~~~is~~~  652 (667)
T KOG2348|consen  626 IGKA-KGPKPNDYVDDLEVVTESISDDD  652 (667)
T ss_pred             hhhc-cCCCcccchhhhheeeeecCcch
Confidence            9544 44466666666766666666554

>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3761 consensus Choline transporter [Lipid transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN02776 prenyltransferase Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 1e-24
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 3e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score =  107 bits (270), Expect = 1e-24
 Identities = 97/597 (16%), Positives = 206/597 (34%), Gaps = 63/597 (10%)

Query: 50  FGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSN 109
           F  + A+     +W+ +   G++ ++E +  AG+++    + + +++    A   +  S 
Sbjct: 16  FAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSG 75

Query: 110 VAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVF-LA 168
             +  G++    Y   + I +++ G   + I  +    +T+ E V+ R+      +  + 
Sbjct: 76  SGYSIGLAI-ASYEWMSAITLIIVGKYFLPIFIE-KGIYTIPEFVEKRFNKKLKTILAVF 133

Query: 169 FCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHS 228
           +  L   +    +L  G   +  + G+ +  +   + L  +VY++ GGL A      I  
Sbjct: 134 WISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 193

Query: 229 VIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYK 288
             +   ++      Y A S +G     +  + ++   +        H        N  Y 
Sbjct: 194 FFL---VLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAA------PGHFEMILDQSNPQYM 244

Query: 289 G-SFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAAR-PSSTHKGYLLGGLVWFAV 346
               + +L  G  V  +     N   +          +AA+  S   KG +    +   V
Sbjct: 245 NLPGIAVLIGGLWVANLYYWGFNQYII-------QRTLAAKSVSEAQKGIVFAAFLALIV 297

Query: 347 PFSLATSLGLGALAL----DLPLTETEASHGLVPPATA--------IALMGKGGSILLLT 394
           PF L    G+ A  +     L  +  + +   +P A             +  G   ++  
Sbjct: 298 PF-LVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFA 356

Query: 395 MLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVI 454
            L  A+ S+ +S L + +++ T DIY+ YI+PD+   K++ V R   +        +A +
Sbjct: 357 ALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPM 416

Query: 455 LNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTA 514
           L   G    ++    G++    +      L W+K  + GAI G +      +       +
Sbjct: 417 LGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLS 476

Query: 515 IEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGE 574
           +              P +   L ++L    V A  SL                      +
Sbjct: 477 M--------------PFMDQMLYTLLFTMVVIAFTSLSTS---------------INDDD 507

Query: 575 LPVDEFKEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAGEFSLGYFTFWAVVAIA 631
                      +  +++ +       V+  L          E +L  F   A V   
Sbjct: 508 PKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVNADAEITLIIFGVMAGVIGT 564
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 100.0
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.28
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.63
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.47
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 97.81
4ain_A539 Glycine betaine transporter BETP; membrane protein 96.71
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 95.93
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
Probab=100.00  E-value=1.4e-63  Score=571.20  Aligned_cols=454  Identities=18%  Similarity=0.240  Sum_probs=351.7

Q ss_pred             cCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCC
Q 004956           69 VGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFG-VMAIEIKRKASHA  147 (722)
Q Consensus        69 ~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~-~la~~lr~~~~~~  147 (722)
                      +||++|+|||++|||++|+|++++|++|||+|+++++|.+|.+|++|+++. ++..+..++.++.+ ++.++.||  .+.
T Consensus         6 ~~~~~~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~-~~~~~~~~~~~i~~~~~~p~~~~--~~~   82 (530)
T 3dh4_A            6 XXXXXXXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIA-SYEWMSAITLIIVGKYFLPIFIE--KGI   82 (530)
T ss_dssp             HHHHHHHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGH-HHHHHHHHHHHHHHHHTHHHHHH--TTC
T ss_pred             ccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence            456889999999999999999999999999999999999999999999863 44444444544433 34555554  589


Q ss_pred             CCHHHHHHHhhCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHH
Q 004956          148 HTVCEIVKARWGTAAHLVFLAFCFLTN-IIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYI  226 (722)
Q Consensus       148 ~Ti~E~l~~Ryg~~~~~v~~~~~li~~-i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~i  226 (722)
                      +|+||++++|||++.|.+.+++.++.+ ..+++.|+++++.+++.++|+|++.++++.++++++||.+||+||+++||.+
T Consensus        83 ~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i  162 (530)
T 3dh4_A           83 YTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVI  162 (530)
T ss_dssp             CSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            999999999999999988888776544 4568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH---HhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHH
Q 004956          227 HSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLV---EVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFG  303 (722)
Q Consensus       227 Q~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~---~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg  303 (722)
                      |+++|+++.+++.+..+   .++||++++.+.+.   +..++..             +...++.+++|.++..+ ..+++
T Consensus       163 Q~~im~~g~~~v~~~~~---~~~Gg~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~i~  225 (530)
T 3dh4_A          163 QVFFLVLGGFMTTYMAV---SFIGGTDGWFAGVSKMVDAAPGHF-------------EMILDQSNPQYMNLPGI-AVLIG  225 (530)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHTTSCHHHHHHHHHHHCGGGG-------------CSSCCSSSSGGGGSCTT-HHHHS
T ss_pred             HHHHHHHHHHHHHHHHH---HHcCChhhHHHHHHHHHhcCchhc-------------ccccCCCCccccccchH-HHHHH
Confidence            99999999888877654   34577665555443   3322211             11111111233332111 11111


Q ss_pred             HHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCccc
Q 004956          304 IINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLP-------------LTETE  369 (722)
Q Consensus       304 ~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~~-------------l~~~~  369 (722)
                      -.+ +.+++..++||+++||++++|| +++||+.++++++++.+|++. .++|+++++++++             ..++.
T Consensus       226 ~~~-~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~-~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~  303 (530)
T 3dh4_A          226 GLW-VANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLV-VLPGIAAYVITSDPQLMASLGDIAATNLPSA  303 (530)
T ss_dssp             THH-HHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTT-HHHHHHHHHHHHCHHHHHHHCTTCCSCCCCS
T ss_pred             HHH-HHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhcccccccCCCC
Confidence            111 1233344579999999999998 578999999998887766544 4689999887621             00223


Q ss_pred             cCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHH
Q 004956          370 ASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMG  449 (722)
Q Consensus       370 ~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~  449 (722)
                      .++|+++|.++. ++|+++.|++++++++|+|||+||.+|+.||++++|+||+++||+++|||+++++|+.++++++++.
T Consensus       304 ~~~d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~  382 (530)
T 3dh4_A          304 ANADKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAC  382 (530)
T ss_dssp             SSGGGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478999999986 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCc
Q 004956          450 FLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNA  529 (722)
Q Consensus       450 ~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G~i~~~~~~~~~  529 (722)
                      .++..++..+..++++....+.+.+++++|+++++||||+|++||++|+++|+++++..+..              ....
T Consensus       383 ~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~--------------~~~~  448 (530)
T 3dh4_A          383 LIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFM--------------PLSM  448 (530)
T ss_dssp             HHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHTS--------------SSCC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH--------------cCCc
Confidence            99976655544467777677777788899999999999999999999999999876543321              1134


Q ss_pred             hhhHHHHHHHHhHhHhhhheecccCCCCCh
Q 004956          530 PMLAGNLVSILTGGAVHAVCSLLWPQNYDW  559 (722)
Q Consensus       530 ~~l~g~~vsl~~s~i~~vivSlltp~~~d~  559 (722)
                      |.++..++++++|.++++++|+++|++.|+
T Consensus       449 ~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~  478 (530)
T 3dh4_A          449 PFMDQMLYTLLFTMVVIAFTSLSTSINDDD  478 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCSSSSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence            567778889999999999999999987653
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00