Citrus Sinensis ID: 004960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHc
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITghwaklspQLKQLVKQSLIESitlehsapvrraSANVVSIIAKYavpagewpdllpflFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFleftndgaevvkfreFIPSILNVSRQCLASGEEDVAVIAFEIFDEliespapllgdsVKSIVHFSLEvssshnlepntrHQAIQIISWLAKYKYnslkkhklvIPILQVMCpllaesneagedddlapdRAAAEVIDTMALNLakhvfppvfefasvscqnaspKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGalrdpeqfVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEdesdevkeKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESvgrarmepilppfVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPlafsscnlddgsavdidgsddeningfggvssddeahcersVRNISVRTGVLDEKAAATQALGLFAlhtkssyapfLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHlrtaktpnvRQLAAVLLRKKITGhwaklspqlKQLVKQSLIESitlehsapvrrASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVssshnlepntrHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFggvssddeahcERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
******LLLIQFLM********************QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS***EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS*******NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA****************AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI************************SVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSC*
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS*****EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIF***NVSLCYHFFLLSCL
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
*AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
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MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query721 2.2.26 [Sep-21-2011]
Q8TEX9 1081 Importin-4 OS=Homo sapien yes no 0.945 0.630 0.283 4e-63
O60100 1067 Probable importin subunit yes no 0.966 0.653 0.264 8e-62
Q8VI75 1082 Importin-4 OS=Mus musculu yes no 0.950 0.633 0.276 1e-61
P40069 1113 Importin subunit beta-4 O yes no 0.866 0.561 0.269 3e-54
Q8BKC5 1097 Importin-5 OS=Mus musculu no no 0.940 0.618 0.262 2e-53
O00410 1097 Importin-5 OS=Homo sapien no no 0.940 0.618 0.260 1e-52
Q8BIV3 1105 Ran-binding protein 6 OS= no no 0.961 0.627 0.264 4e-45
O60518 1105 Ran-binding protein 6 OS= no no 0.947 0.618 0.260 6e-44
Q54EW3 1067 Probable importin-5 homol no no 0.847 0.572 0.234 5e-39
O74476 1095 Importin subunit beta-3 O no no 0.933 0.614 0.253 8e-38
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 207/729 (28%), Positives = 362/729 (49%), Gaps = 47/729 (6%)

Query: 15  PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74
           PD +  R+A +Q++ + + P  +PAL   L +A  P +RQ AAVL R+++   W +L+ +
Sbjct: 16  PDTERIRRATEQLQIVLRAPAALPALCDLLASAADPQIRQFAAVLTRRRLNTRWRRLAAE 75

Query: 75  LKQLVKQSLIESITLEHSAPVRRASANV-VSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE 133
            ++ +K  ++ ++  E    V  + A +  +I  K  + A  WP LL  L   + S    
Sbjct: 76  QRESLKSLILTALQRETEHCVSLSLAQLSATIFRKEGLEA--WPQLLQLLQHSTHSPHSP 133

Query: 134 HREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193
            RE+ L+L S +  +  + F+PH  ++  LL + L +  S  +   +L+ + +   + + 
Sbjct: 134 EREMGLLLLSVVVTSRPEAFQPHHRELLRLLNETLGEVGSPGLLFYSLRTLTTMAPYLST 193

Query: 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSL 253
             +V   R  +P ++ ++ Q L   +E  A  A E  DEL+ES  P++   +  ++ F L
Sbjct: 194 -EDVPLARMLVPKLI-MAMQTLIPIDEAKACEALEALDELLESEVPVITPYLSEVLTFCL 251

Query: 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAG----E 309
           EV+ +  L    R + +  +++L K K  +L K++L+ P+L  + P++A     G    E
Sbjct: 252 EVARNVALGNAIRIRILCCLTFLVKVKSKALLKNRLLPPLLHTLFPIVAAEPPPGQLDPE 311

Query: 310 DDDL------------APDRAAAEVIDTMALNL-AKHVFPPVFEFASVSCQNASPKYREA 356
           D D              P   A +V+D +AL+L  + + P +      + ++ SP  R+A
Sbjct: 312 DQDSEEEELEIELMGETPKHFAVQVVDMLALHLPPEKLCPQLMPMLEEALRSESPYQRKA 371

Query: 357 AVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415
            +  + ++S+G  + ++++ L  +L IV   L DP Q VR AA FALGQF+E LQP I S
Sbjct: 372 GLLVLAVLSDGAGDHIRQRLLPPLLQIVCKGLEDPSQVVRNAALFALGQFSENLQPHISS 431

Query: 416 HYESVLPCILNALED---ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN- 471
           +   V+P +L  L+           K+ YAL  F E++G ++ P+L  LM  +L  L N 
Sbjct: 432 YSREVMPLLLAYLKSVPLGHTHHLAKACYALENFVENLGPKVQPYLPELMECMLQLLRNP 491

Query: 472 -SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS-RARATELLG 529
            SPR  +E  +SA+G++A AA+ + +PY   ++E L+ F+ LT  EDL+  + ++ E LG
Sbjct: 492 SSPRA-KELAVSALGAIATAAQASLLPYFPAIMEHLREFL-LTGREDLQPVQIQSLETLG 549

Query: 530 LVAESVGRARMEPILPPFVEAAISGFGL----EFSELREYTHGFFSNIAGVLEDGFAQYL 585
           ++A +VG    EP+ P   E    G GL    +  +LR  T+  F+ ++G++ +G A +L
Sbjct: 550 VLARAVG----EPMRPLAEECCQLGLGLCDQVDDPDLRRCTYSLFAALSGLMGEGLAPHL 605

Query: 586 PLVVPLAFSSCNLDDGSAVDIDGSDD--------ENINGFGGVSSDDEAHCERSVRNISV 637
             +  L   S    +G     DGS          +       +  D E   +  +   SV
Sbjct: 606 EQITTLMLLSLRSTEGIVPQYDGSSSFLLFDDESDGEEEEELMDEDVEEEDDSEISGYSV 665

Query: 638 RTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNIL 697
                DEK     A+G  +++T  ++ P++E   + + +     H +VR  A  AL    
Sbjct: 666 ENAFFDEKEDTCAAVGEISVNTSVAFLPYMESVFEEVFKLLECPHLNVRKAAHEALGQFC 725

Query: 698 TAAHAIFQS 706
            A H   QS
Sbjct: 726 CALHKACQS 734
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of RPS3A. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.
Homo sapiens (taxid: 9606)
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function description
>sp|Q8VI75|IPO4_MOUSE Importin-4 OS=Mus musculus GN=Ipo4 PE=1 SV=1 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
225447959 1048 PREDICTED: probable importin subunit bet 0.981 0.675 0.877 0.0
224101343 1048 predicted protein [Populus trichocarpa] 0.981 0.675 0.874 0.0
356528799 1048 PREDICTED: probable importin subunit bet 0.981 0.675 0.857 0.0
356558485 1048 PREDICTED: probable importin subunit bet 0.981 0.675 0.854 0.0
449457055 1046 PREDICTED: probable importin subunit bet 0.979 0.674 0.851 0.0
224109024 1048 predicted protein [Populus trichocarpa] 0.981 0.675 0.867 0.0
147778567 1028 hypothetical protein VITISV_007422 [Viti 0.954 0.669 0.833 0.0
22328982 1048 armadillo/beta-catenin-like repeat-conta 0.981 0.675 0.826 0.0
297799210 1048 importin beta-2 subunit family protein [ 0.981 0.675 0.823 0.0
218192474 1047 hypothetical protein OsI_10833 [Oryza sa 0.979 0.674 0.776 0.0
>gi|225447959|ref|XP_002267673.1| PREDICTED: probable importin subunit beta-4 [Vitis vinifera] gi|298204504|emb|CBI23779.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1285 bits (3324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/708 (87%), Positives = 664/708 (93%)

Query: 1   MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
           MAQSLELLLIQFLMPDNDARRQAE+QIKRLAKDPQV+PAL+ HLRTAKTPNVRQL+AVLL
Sbjct: 1   MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALIHHLRTAKTPNVRQLSAVLL 60

Query: 61  RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
           RKKITGHWAKLSPQL+ LVKQSLIESIT+EHS PVRRASANVVSI+AKYAVPAGEWPDLL
Sbjct: 61  RKKITGHWAKLSPQLRHLVKQSLIESITMEHSPPVRRASANVVSIVAKYAVPAGEWPDLL 120

Query: 121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
           PFLFQ SQS QE+HREVALILFSSLTETIG  FRPHFAD+QALLLKCLQDETSNRVR+AA
Sbjct: 121 PFLFQCSQSAQEDHREVALILFSSLTETIGIAFRPHFADLQALLLKCLQDETSNRVRVAA 180

Query: 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
           LKA+GSFLEFT DGAEVVKFREFIPSILNVSRQCLASGEEDVA+IAFEIFDELIESPAPL
Sbjct: 181 LKAVGSFLEFTQDGAEVVKFREFIPSILNVSRQCLASGEEDVAIIAFEIFDELIESPAPL 240

Query: 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
           LGDSVKSIV FSL+V SS NLE NTRHQAIQIISWLAKYK NSLKKHKLVIPILQVMCPL
Sbjct: 241 LGDSVKSIVQFSLDVCSSQNLESNTRHQAIQIISWLAKYKSNSLKKHKLVIPILQVMCPL 300

Query: 301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
           LAES    EDDDLAPDRAAAEVIDTMALNL+KH+FPPVFEFAS+S Q+A+PKYREA+ T 
Sbjct: 301 LAESANGDEDDDLAPDRAAAEVIDTMALNLSKHMFPPVFEFASLSSQSANPKYREASATV 360

Query: 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
           +G+ISEGC + MK+KLE +LHIVLGALRDPEQ VRGAASFALGQFAE+LQPEIVSHYESV
Sbjct: 361 LGVISEGCLDLMKDKLEPILHIVLGALRDPEQMVRGAASFALGQFAEHLQPEIVSHYESV 420

Query: 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
           LPCILNALED SDEVKEKSYYALAAFCE+MGEEILPFLDPLMGKLLAAL+NSPRNLQETC
Sbjct: 421 LPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMGKLLAALQNSPRNLQETC 480

Query: 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
           MSAIGSVAAAAEQAF+PYAERVLEL+K FMVLTNDEDLRSRARATEL+G+VA SVGR +M
Sbjct: 481 MSAIGSVAAAAEQAFVPYAERVLELMKNFMVLTNDEDLRSRARATELVGMVAMSVGRIKM 540

Query: 541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
           EPILPPF+EAAISGF LEFSELREYTHGFFSN+A +++D F QYLP VVPLAFSSCNLDD
Sbjct: 541 EPILPPFIEAAISGFALEFSELREYTHGFFSNLAEIMDDSFTQYLPHVVPLAFSSCNLDD 600

Query: 601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
           GSAVDID SDDENINGFGGVSSDDEAH E  VRNIS+RTGVLDEKAAATQALGLFALHTK
Sbjct: 601 GSAVDIDESDDENINGFGGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFALHTK 660

Query: 661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHN 708
            SYAP+LEESLKILVRH+ YFHEDVR QA+ ALK +LTAA A+FQ HN
Sbjct: 661 GSYAPYLEESLKILVRHSGYFHEDVRLQAIIALKYMLTAAEAVFQGHN 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101343|ref|XP_002312242.1| predicted protein [Populus trichocarpa] gi|222852062|gb|EEE89609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356528799|ref|XP_003532985.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|356558485|ref|XP_003547537.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|449457055|ref|XP_004146264.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] gi|449495557|ref|XP_004159877.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224109024|ref|XP_002315055.1| predicted protein [Populus trichocarpa] gi|222864095|gb|EEF01226.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147778567|emb|CAN76102.1| hypothetical protein VITISV_007422 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22328982|ref|NP_194494.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|17065302|gb|AAL32805.1| putative protein [Arabidopsis thaliana] gi|38564254|gb|AAR23706.1| At4g27640 [Arabidopsis thaliana] gi|332659973|gb|AEE85373.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799210|ref|XP_002867489.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297313325|gb|EFH43748.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218192474|gb|EEC74901.1| hypothetical protein OsI_10833 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
TAIR|locus:2137717 1048 AT4G27640 "AT4G27640" [Arabido 0.981 0.675 0.826 4e-312
ZFIN|ZDB-GENE-041014-307 1085 ipo4 "importin 4" [Danio rerio 0.837 0.556 0.307 4e-81
DICTYBASE|DDB_G0270336 1103 ipo4 "importin 4" [Dictyosteli 0.955 0.624 0.287 6e-80
POMBASE|SPBC14F5.03c 1067 kap123 "karyopherin Kap123" [S 0.965 0.652 0.270 7.8e-71
FB|FBgn0042177 1079 CG32164 [Drosophila melanogast 0.884 0.591 0.243 3.2e-53
FB|FBgn0042178 1080 CG32165 [Drosophila melanogast 0.814 0.543 0.262 8.1e-52
MGI|MGI:1923001 1082 Ipo4 "importin 4" [Mus musculu 0.669 0.446 0.280 1.1e-50
ASPGD|ASPL0000030160 1095 kapI [Emericella nidulans (tax 0.864 0.568 0.285 3e-50
RGD|1305206 1083 Ipo4 "importin 4" [Rattus norv 0.669 0.445 0.274 1.8e-49
RGD|1308715 1097 Ipo5 "importin 5" [Rattus norv 0.736 0.484 0.280 1.3e-47
TAIR|locus:2137717 AT4G27640 "AT4G27640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2994 (1059.0 bits), Expect = 4.0e-312, P = 4.0e-312
 Identities = 585/708 (82%), Positives = 658/708 (92%)

Query:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
             MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL
Sbjct:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60

Query:    61 RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
             RK+ITGHWAKLSPQLKQ VKQSLIESIT+E+S PVRRASANVVS++AKYAVPAGEWPDLL
Sbjct:    61 RKRITGHWAKLSPQLKQHVKQSLIESITVENSPPVRRASANVVSVVAKYAVPAGEWPDLL 120

Query:   121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
              FLFQ SQS QE+HREVALILFSSLTETIG TFRP+FAD+QALLLKC+QDE+S+RVR+AA
Sbjct:   121 TFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVAA 180

Query:   181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
             LKA+GSFLEFTNDG EVVKFR+FIPSIL+VSR+C+ASGEEDVA++AFEIFDELIESPAPL
Sbjct:   181 LKAVGSFLEFTNDGDEVVKFRDFIPSILDVSRKCIASGEEDVAILAFEIFDELIESPAPL 240

Query:   241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
             LGDSVK+IV FSLEVS + NLE +TRHQAIQI+SWLAKYKYNSLKKHKLVIPILQVMCPL
Sbjct:   241 LGDSVKAIVQFSLEVSCNQNLESSTRHQAIQIVSWLAKYKYNSLKKHKLVIPILQVMCPL 300

Query:   301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
             LAES++  +DDDLAPDRA+AEVIDT+A+NL KHVF PV EFASV CQ+ + K+REA+VTA
Sbjct:   301 LAESSDQEDDDDLAPDRASAEVIDTLAMNLPKHVFLPVLEFASVHCQSTNLKFREASVTA 360

Query:   361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
             +G+ISEGC + MKEKL++VL+IVLGALRDPE  VRGAASFA+GQFAE+LQPEI+SHY+SV
Sbjct:   361 LGVISEGCFDLMKEKLDTVLNIVLGALRDPELVVRGAASFAIGQFAEHLQPEILSHYQSV 420

Query:   421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
             LPC+L A+ED S+EVKEKS+YALAAFCE+MGEEI+P LD LMGKL+AALENSPRNLQETC
Sbjct:   421 LPCLLIAIEDTSEEVKEKSHYALAAFCENMGEEIVPLLDHLMGKLMAALENSPRNLQETC 480

Query:   481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
             MSAIGSVAAAAEQAF PYAERVLEL+K FMVLT DEDLR+RAR+TEL+G+VA SVGR  M
Sbjct:   481 MSAIGSVAAAAEQAFNPYAERVLELMKFFMVLTKDEDLRARARSTELVGIVAMSVGRKGM 540

Query:   541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
             E ILPPF++AAISGF LEFSELREYTHGFFSN+A +L+D FAQYLP V+PL F+SCNLDD
Sbjct:   541 EAILPPFIDAAISGFELEFSELREYTHGFFSNVAEILDDTFAQYLPRVMPLVFASCNLDD 600

Query:   601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
             GSAVDID SDDEN+N FGGVSSDD+A  E  VRNISVRTGVLDEKAAATQALGLFALHTK
Sbjct:   601 GSAVDIDESDDENVNDFGGVSSDDDADDEPRVRNISVRTGVLDEKAAATQALGLFALHTK 660

Query:   661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHN 708
             S++AP+LEESLKI+ +H++YFHEDVR QAV  LK+IL AAHAIFQ+HN
Sbjct:   661 SAFAPYLEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHN 708
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
ZFIN|ZDB-GENE-041014-307 ipo4 "importin 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270336 ipo4 "importin 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC14F5.03c kap123 "karyopherin Kap123" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0042177 CG32164 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0042178 CG32165 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1923001 Ipo4 "importin 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030160 kapI [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
RGD|1305206 Ipo4 "importin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026483001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (1048 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.490
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
   •    0.461
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   •    0.435
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.428
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
   •    0.427
GSVIVG00025547001
RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa)
   •    0.413
GSVIVG00016571001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (474 aa)
   •    0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 6e-25
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 1e-12
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 1e-10
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 2e-05
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 3e-05
COG5656 970 COG5656, SXM1, Importin, protein involved in nucle 8e-05
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 6e-25
 Identities = 129/651 (19%), Positives = 235/651 (36%), Gaps = 76/651 (11%)

Query: 13  LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAVLLRKKITGH-- 67
           L PD +AR +AE Q+  L      Q +  LVQ L    +   +R +A ++L+  +  +  
Sbjct: 15  LSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDP 74

Query: 68  ---------WAKLSPQLKQLVKQSLIESITLEHSAP-VRRASANVVSIIAKYAVPAGEWP 117
                    W  +  + K+ VK   +    L+   P     +A +++ IA+  +P   WP
Sbjct: 75  ELQKGCSQRWLGMRHESKEQVKGMALR--ALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132

Query: 118 DLLPFLFQFSQSEQEEH--REVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSN 174
            L+  + +    EQ      E   I          +         + A+++  L++ET++
Sbjct: 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTS 192

Query: 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234
            VR+AALKA+   L F         + E     + V  +     +E++   AF   ++++
Sbjct: 193 AVRLAALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249

Query: 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW--------------LAKYK 280
                L    ++S +  +L   +   ++      AIQ + +                   
Sbjct: 250 M----LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305

Query: 281 YNSLKKHKL----VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP 336
               + H      V  +L  +  LL +  E    DD  P  AA+  +   A      +  
Sbjct: 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR 365

Query: 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVR 395
           PV  F   + ++ S   REAAV A G +  G  E    K+    L  +   + D   +V+
Sbjct: 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425

Query: 396 GAASFALGQFAEYLQPEIVS---HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452
              ++  G  A+++   I+S   H    +   L  L D        S +      + + +
Sbjct: 426 STTAWCFGAIADHV-AMIISPCGHLVLEVSASLIGLMDCPFRSINCS-WRKENLVDHIAK 483

Query: 453 E-------ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
                   +  F   ++  L+   E   +  NL+ +  SA+G++      A         
Sbjct: 484 AVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543

Query: 504 -----ELLKIFMVLTNDEDLRSRARATELLG---LVAESVGRARMEPILPPFVEAAISGF 555
                +L +   VL        +    EL      V E++ R R   I    VE  +   
Sbjct: 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED--VEDQLMEL 601

Query: 556 GLEFSELREYTHGF------FSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
            +   E  + T  F       S ++  LE+ F QY    +P    + N  D
Sbjct: 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTD 652

Length = 858
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 721
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 100.0
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.98
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 99.97
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.96
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.96
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.94
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.94
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 99.94
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 99.92
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.9
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.89
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.89
KOG2022 982 consensus Nuclear transport receptor LGL2 (importi 99.86
KOG1242569 consensus Protein containing adaptin N-terminal re 99.85
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.84
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.84
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 99.84
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.82
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.8
KOG1242569 consensus Protein containing adaptin N-terminal re 99.79
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.76
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.75
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.75
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.74
PTZ00429746 beta-adaptin; Provisional 99.74
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.7
PTZ00429 746 beta-adaptin; Provisional 99.67
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.66
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.65
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.6
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.56
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.52
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.49
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.49
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.48
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.45
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.43
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.39
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.39
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 99.38
PRK09687280 putative lyase; Provisional 99.38
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.36
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.35
PRK09687280 putative lyase; Provisional 99.35
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.35
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.34
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 99.31
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.28
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.27
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.22
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.21
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 99.2
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.18
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 99.18
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.17
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.15
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.11
KOG2032533 consensus Uncharacterized conserved protein [Funct 99.07
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.06
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.05
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.04
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.01
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.99
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.99
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 98.97
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.96
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.92
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.89
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.87
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.86
PF05804708 KAP: Kinesin-associated protein (KAP) 98.86
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.86
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.84
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.82
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 98.8
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.77
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.76
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.69
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.67
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.67
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.66
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.66
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.64
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.62
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.59
KOG2956516 consensus CLIP-associating protein [General functi 98.57
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.53
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.52
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.49
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.48
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.48
KOG2956516 consensus CLIP-associating protein [General functi 98.46
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 98.46
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.46
KOG04141251 consensus Chromosome condensation complex Condensi 98.43
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.41
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 98.35
COG5096 757 Vesicle coat complex, various subunits [Intracellu 98.34
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.34
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.34
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.33
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.3
KOG2259 823 consensus Uncharacterized conserved protein [Funct 98.29
PF05804708 KAP: Kinesin-associated protein (KAP) 98.28
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.28
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.25
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.24
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 98.24
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.22
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.14
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.14
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.14
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 98.14
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 98.13
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.12
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 98.12
PF14500262 MMS19_N: Dos2-interacting transcription regulator 98.11
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.07
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.07
PF08167165 RIX1: rRNA processing/ribosome biogenesis 98.04
PF05004309 IFRD: Interferon-related developmental regulator ( 98.02
PF05004309 IFRD: Interferon-related developmental regulator ( 98.02
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 98.01
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.99
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.98
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.97
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.96
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 97.96
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.94
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.93
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.92
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.91
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.9
PF04510174 DUF577: Family of unknown function (DUF577); Inter 97.89
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.89
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.87
TIGR02270410 conserved hypothetical protein. Members are found 97.87
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.86
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.86
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.85
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.81
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.79
COG5656970 SXM1 Importin, protein involved in nuclear import 97.73
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.72
PF08767 319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 97.67
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.67
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.65
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.64
KOG18511710 consensus Uncharacterized conserved protein [Funct 97.63
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.62
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 97.62
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.62
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.6
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.6
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.58
TIGR02270410 conserved hypothetical protein. Members are found 97.57
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.57
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.53
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.52
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.49
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.48
KOG19491005 consensus Uncharacterized conserved protein [Funct 97.43
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 97.42
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.4
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.39
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.39
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.34
KOG1048717 consensus Neural adherens junction protein Plakoph 97.25
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 97.25
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.22
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.21
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 97.18
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 97.17
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.17
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.14
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.04
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 97.03
KOG2025892 consensus Chromosome condensation complex Condensi 97.02
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 97.01
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.94
KOG2062929 consensus 26S proteasome regulatory complex, subun 96.94
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.91
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.9
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.89
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.88
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 96.88
COG5116926 RPN2 26S proteasome regulatory complex component [ 96.84
KOG1243690 consensus Protein kinase [General function predict 96.79
PF05536543 Neurochondrin: Neurochondrin 96.77
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.76
PF05536543 Neurochondrin: Neurochondrin 96.73
KOG2149393 consensus Uncharacterized conserved protein [Funct 96.72
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 96.72
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.68
KOG0567289 consensus HEAT repeat-containing protein [General 96.66
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.61
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.6
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.56
PF1036392 DUF2435: Protein of unknown function (DUF2435) 96.54
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.46
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.38
KOG0567289 consensus HEAT repeat-containing protein [General 96.31
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 96.26
COG5218885 YCG1 Chromosome condensation complex Condensin, su 96.22
KOG4524 1014 consensus Uncharacterized conserved protein [Funct 96.19
smart00638574 LPD_N Lipoprotein N-terminal Domain. 96.14
KOG1222 791 consensus Kinesin associated protein KAP [Intracel 96.09
KOG2025 892 consensus Chromosome condensation complex Condensi 96.06
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 96.05
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 96.02
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 95.96
KOG3961262 consensus Uncharacterized conserved protein [Funct 95.85
KOG2549576 consensus Transcription initiation factor TFIID, s 95.84
smart00638574 LPD_N Lipoprotein N-terminal Domain. 95.84
KOG1243690 consensus Protein kinase [General function predict 95.83
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.79
KOG18371621 consensus Uncharacterized conserved protein [Funct 95.78
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.78
KOG18371621 consensus Uncharacterized conserved protein [Funct 95.74
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 95.71
KOG2137700 consensus Protein kinase [Signal transduction mech 95.55
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.55
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 95.45
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 95.35
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.27
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.18
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.13
KOG2137700 consensus Protein kinase [Signal transduction mech 95.11
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.1
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.03
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.94
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.9
KOG4199461 consensus Uncharacterized conserved protein [Funct 94.89
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.76
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.56
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.47
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 94.43
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 94.34
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 94.32
PF14222552 MOR2-PAG1_N: Cell morphogenesis N-terminal 94.29
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 94.22
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 94.04
KOG2549576 consensus Transcription initiation factor TFIID, s 93.92
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 93.91
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 93.82
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 93.72
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 93.64
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 93.62
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 93.61
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 93.31
cd03561133 VHS VHS domain family; The VHS domain is present i 93.25
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 93.1
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 93.1
cd03561133 VHS VHS domain family; The VHS domain is present i 93.01
KOG4199461 consensus Uncharacterized conserved protein [Funct 92.92
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 92.73
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 92.72
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 92.69
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 92.6
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 92.58
PF12726727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 92.47
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 92.4
KOG3961262 consensus Uncharacterized conserved protein [Funct 91.89
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 91.53
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 91.39
PF11701157 UNC45-central: Myosin-binding striated muscle asse 91.3
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 91.29
KOG2973353 consensus Uncharacterized conserved protein [Funct 91.28
KOG18511710 consensus Uncharacterized conserved protein [Funct 91.18
KOG2038 988 consensus CAATT-binding transcription factor/60S r 91.01
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 91.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 90.87
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 90.83
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 90.69
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 90.61
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 90.45
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 90.38
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 90.26
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 90.25
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 89.95
KOG1048717 consensus Neural adherens junction protein Plakoph 89.9
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 89.89
PF03542356 Tuberin: Tuberin; InterPro: IPR018515 Initiation o 89.87
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 89.74
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 89.63
PF14868559 DUF4487: Domain of unknown function (DUF4487) 89.53
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 89.25
KOG2199462 consensus Signal transducing adaptor protein STAM/ 88.9
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 88.85
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 86.93
KOG3036293 consensus Protein involved in cell differentiation 86.8
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 86.15
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.02
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 85.88
COG5369743 Uncharacterized conserved protein [Function unknow 85.82
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 85.69
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 85.62
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 85.6
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 85.59
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 85.32
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 85.27
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 84.89
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 84.82
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 84.82
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 84.78
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 84.41
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 84.19
KOG2973353 consensus Uncharacterized conserved protein [Funct 83.87
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 83.86
PF11701157 UNC45-central: Myosin-binding striated muscle asse 83.49
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 83.41
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 83.29
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 82.85
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 82.67
KOG2256661 consensus Predicted protein involved in nuclear ex 82.58
KOG1877 819 consensus Putative transmembrane protein cmp44E [G 81.53
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 81.53
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 81.04
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 80.75
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 80.43
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 80.21
PF04510174 DUF577: Family of unknown function (DUF577); Inter 80.11
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 80.01
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-84  Score=667.71  Aligned_cols=695  Identities=38%  Similarity=0.603  Sum_probs=621.0

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960            2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ   81 (721)
Q Consensus         2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~   81 (721)
                      .+.+.++++.+.|||+++|++||+.|+.....+.....|.+++.+..+|++|++|++++|+.+.++|+.++.+.++.||.
T Consensus         3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks   82 (1075)
T KOG2171|consen    3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS   82 (1075)
T ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            46799999999999999999999999877766668899999998889999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 004960           82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ  161 (721)
Q Consensus        82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~  161 (721)
                      .++..+.+|+.+.||+++|++++.|++.+.|. .||++++.+++..+|+++..|+.|+.+|..+.+..++.+.+|++++.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            99999999999999999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960          162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL  240 (721)
Q Consensus       162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~  240 (721)
                      +++.++++| ++..||.+|+++++.++.+.+ +......++.++|.++..+.+.+++++.+....++++|.++++..|++
T Consensus       162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            999999999 554599999999999998884 456678899999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhc-CChHHHHHHHHhhhccCCCC---------CCC
Q 004960          241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED  310 (721)
Q Consensus       241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l~~~~~~---------~~~  310 (721)
                      +++++..++++++.+..++++++.+|..|++++..++++.|...++. .+..+++..++..+++.++|         ++|
T Consensus       241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded  320 (1075)
T KOG2171|consen  241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED  320 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence            99999999999999999999999999999999999999988877653 47788888888888876544         122


Q ss_pred             CCCcHHHHHHHHHHHHHHHcC-ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC
Q 004960          311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD  389 (721)
Q Consensus       311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d  389 (721)
                      +...+...|.++++.++..+| +.+++++++.+...+.|++|+.|+|++.+++.+++||.+.+...++++++.+++.++|
T Consensus       321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND  400 (1075)
T ss_pred             cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence            335788999999999999998 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhhHHHHHhhhh-HHHHHHHhccCC-ChHHHHHHHHHHHHHHHhh-hhccccchHHHHH-HH
Q 004960          390 PEQFVRGAASFALGQFAEYLQPEIVSHYES-VLPCILNALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMG-KL  465 (721)
Q Consensus       390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~~-~l  465 (721)
                      ++|+||++|+.++|++++.+.+.++++.++ +.|.|+..+.+. +++|+.+|+.++-++.+.+ ++.+.||++.+++ .+
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987755 455777777776 4689999999999999888 5678899999999 55


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchh-hhhHHHHHHHHHHHHHhhchhhccCCh
Q 004960          466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED-LRSRARATELLGLVAESVGRARMEPIL  544 (721)
Q Consensus       466 ~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~  544 (721)
                      ..+.+++.+.+++.++.+|++++.+.++.|.||++.++|.|.++++..++++ ..+|+++++|++.++.++|++.|.|+.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            5555666899999999999999999999999999999999999999876544 568999999999999999999999999


Q ss_pred             HHHHHHHHhc---cCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCC
Q 004960          545 PPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS  621 (721)
Q Consensus       545 ~~i~~~l~~~---l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (721)
                      .++++.+...   ..+++...+++.+.+|+++|+.+|++|.||++.++|.+++.+..+++.. .+++++++......++.
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~-~~d~~d~e~~~~~~~~e  639 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA-LSDEEDEEEEQDLDGWE  639 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc-CcCchhhhhccccccch
Confidence            9999999886   4455778899999999999999999999999999999999998876542 12333433333333321


Q ss_pred             CCchhhhhcccc-ceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHH-HHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960          622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLK-ILVRHASYFHEDVRYQAVFALKNILTA  699 (721)
Q Consensus       622 ~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~vr~~a~~~l~~l~~~  699 (721)
                           ..+...+ .++|+|+.+++|..|+..|+.++...+++|.||+++.++ .+..+..++++.||.+|+++++.++++
T Consensus       640 -----~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~  714 (1075)
T KOG2171|consen  640 -----VVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC  714 (1075)
T ss_pred             -----hhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence                 1112223 688999999999999999999999999999999999999 455556789999999999999999999


Q ss_pred             HHHhc
Q 004960          700 AHAIF  704 (721)
Q Consensus       700 ~~~~~  704 (721)
                      .+..-
T Consensus       715 ~~~A~  719 (1075)
T KOG2171|consen  715 ALKAC  719 (1075)
T ss_pred             HHHHh
Confidence            98844

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only] Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
2bpt_A 861 Structure Of The Nup1p:kap95p Complex Length = 861 8e-17
3nd2_A 861 Structure Of Yeast Importin-Beta (Kap95p) Length = 2e-16
2ot8_A 852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-12
2h4m_A 865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 5e-11
2p8q_A 876 Crystal Structure Of Human Importin Beta Bound To T 7e-11
1qgk_A 876 Structure Of Importin Beta Bound To The Ibb Domain 1e-10
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 2e-10
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 3e-10
1ukl_A 876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 7e-10
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 7e-10
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 2e-08
2qmr_A 890 Karyopherin Beta2TRANSPORTIN Length = 890 5e-06
2qna_A 762 Crystal Structure Of Human Importin-Beta (127-876) 2e-05
1qbk_B 890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 9e-05
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 125/572 (21%), Positives = 225/572 (39%), Gaps = 94/572 (16%)
Query: 6   ELLLIQFLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTP-NVRQLAAVLLRK 62
           +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67
Query: 63  KITG-----------HW-AKLSPQLKQLVK-QSLIESITLEHSAPVRRASANVVSIIAKY 109
           ++              W  ++SP+ K  +K  +L   +++E       A         + 
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE- 126
Query: 110 AVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLLKCL 168
            +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L+  +
Sbjct: 127 -LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Query: 169 Q----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224
           Q     ETS  VR+AAL A+   L F  +  E    R ++  ++     C A+  ED+ V
Sbjct: 186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV-----CEATQAEDIEV 240
Query: 225 --IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW------- 275
              AF    +++      +   ++  + ++L +++  +  PN +  ++ +  W       
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKS--PNDKVASMTVEFWSTICEEE 297
Query: 276 ------LAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDT 325
                 LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A   +  
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357
Query: 326 MALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385
            A N   H+  PV EF   +    + + REAAV A G I +G                  
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG------------------ 399
Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445
               P++  R                    +    LP ILN + D+S +VKE + + +  
Sbjct: 400 ----PDKVQR------------------TYYVHQALPSILNLMNDQSLQVKETTAWCIGR 437
Query: 446 FCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
             + + E I P   L  ++   L  L++ P+       + I  V   AE    P      
Sbjct: 438 IADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP 497
Query: 504 ELLKIFMVLTN--DEDLRSRARATELLGLVAE 533
            L+   +   N  D +  +RA A   L  + E
Sbjct: 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVE 529
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-119
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 7e-12
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-117
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-100
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-25
1qgr_A 876 Protein (importin beta subunit); transport recepto 5e-05
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-73
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 1e-40
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-30
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-21
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 1e-10
2x19_B 963 Importin-13; nuclear transport, protein transport; 1e-26
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-24
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-20
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 6e-16
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-15
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-21
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-04
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 3e-18
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-05
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 2e-14
2x1g_F 971 Cadmus; transport protein, developmental protein, 6e-14
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 7e-08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-05
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 8e-08
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 5e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 5e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 1e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  376 bits (965), Expect = e-119
 Identities = 141/771 (18%), Positives = 292/771 (37%), Gaps = 72/771 (9%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGH------------WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++                 ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281
           V   AF    +++      +   ++  + ++L +++  +         ++  S + + + 
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 282 NSLKKHKLVIP---------------ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326
           +   +                     ++  +  LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYAL 443
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D   +V     + +
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTI 477

Query: 444 AAFCEDMGEE----ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIP 497
               E + E     I  F   L+  L+ A    ++  N + +  SA+ ++   A      
Sbjct: 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAE 537

Query: 498 YAERVLELLKIFM---------VLTNDEDLRSRARATELLGLVAESVGR--ARMEPILPP 546
            +  +   +   +          LT ++    +   + +L ++A  + +  + +EP+   
Sbjct: 538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM 597

Query: 547 FVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDG---- 601
            +          + + + +      S +A  L  GF +YL    P    + N  D     
Sbjct: 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSI 657

Query: 602 SAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661
           +AV        ++          +A      + IS      + K A     G  A +  +
Sbjct: 658 TAVGFIADISNSL--EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715

Query: 662 SYAPFLEESLKILVRHASYFHEDVRYQAVFALKN----ILTAAHAIFQSHN 708
            + P+L + + + V   +   E+   +A+         +L A   I    +
Sbjct: 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 100.0
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2x19_B 963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F 971 Cadmus; transport protein, developmental protein, 100.0
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.97
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.9
2x1g_F971 Cadmus; transport protein, developmental protein, 99.9
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.89
2x19_B963 Importin-13; nuclear transport, protein transport; 99.89
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.87
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.87
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.86
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.86
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.86
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.86
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.85
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.84
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.84
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.83
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.82
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.81
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.8
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.79
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.79
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.79
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.78
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.77
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.77
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.76
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.76
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.75
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.73
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.73
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.72
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.72
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.69
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.66
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.59
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.57
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.54
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.52
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.49
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.47
3nmz_A458 APC variant protein; protein-protein complex, arma 99.47
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.47
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.43
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.38
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.36
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.36
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.35
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.33
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.32
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.31
3nmz_A458 APC variant protein; protein-protein complex, arma 99.3
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.29
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.28
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.24
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.22
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.19
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.19
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.18
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.14
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.13
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.11
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.08
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.07
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.04
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.0
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.86
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.78
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.78
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.75
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.73
1vsy_5 997 Proteasome activator BLM10; 20S proteasome BLM10, 98.71
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.67
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.64
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.64
3grl_A651 General vesicular transport factor P115; vesicle t 98.6
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.5
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.46
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.26
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.25
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.16
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.15
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 98.12
3grl_A 651 General vesicular transport factor P115; vesicle t 98.08
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 98.07
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.02
1w9c_A 321 CRM1 protein, exportin 1; nuclear protein, nuclear 97.82
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 97.67
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.58
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 97.58
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.55
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.46
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.23
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 97.02
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.86
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.71
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 96.61
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.51
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.43
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.43
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 96.41
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 96.26
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 96.08
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 96.07
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 95.62
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 95.47
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 94.98
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 94.93
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 94.78
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 94.44
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 93.69
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 93.6
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 93.33
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 93.23
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 93.13
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 92.71
3g2s_A149 C-terminal fragment of sortilin-related receptor; 92.21
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 92.2
3g2s_A149 C-terminal fragment of sortilin-related receptor; 92.03
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 91.51
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 90.66
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 90.49
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 90.15
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 89.46
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 89.19
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.86
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 87.52
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 85.92
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 85.6
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 84.92
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 84.86
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 84.46
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 83.73
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 83.13
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 81.27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=1.1e-59  Score=535.32  Aligned_cols=646  Identities=18%  Similarity=0.277  Sum_probs=553.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960            3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK   80 (721)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~--~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~   80 (721)
                      +++.++|+.++|||+++|++|+++|++++++|+|...|..++.  ++.++.+|++|+++|||.+.++|..++++.+..||
T Consensus        13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik   92 (852)
T 4fdd_A           13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK   92 (852)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence            5788899999999999999999999999999999999999998  45789999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc-----cc
Q 004960           81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----RP  155 (721)
Q Consensus        81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~-----~~  155 (721)
                      +.+++.|. ++++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++..|+.++.+++.+++..+..+     ..
T Consensus        93 ~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~  170 (852)
T 4fdd_A           93 SECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR  170 (852)
T ss_dssp             HHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence            99999987 68999999999999999998866 5999999999999999999999999999999999876543     34


Q ss_pred             cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960          156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE  235 (721)
Q Consensus       156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~  235 (721)
                      .++.+++.+.+++++ +++.+|..|++++..++...+.     .....++.++..+...+.+++++++..++++|..+++
T Consensus       171 ~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~  244 (852)
T 4fdd_A          171 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE  244 (852)
T ss_dssp             CHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            578999999999998 8999999999999988765421     1344556666666667888899999999999999999


Q ss_pred             CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH--hhhhhcCChHHHHHHHHhhhc-----------
Q 004960          236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLLA-----------  302 (721)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l~-----------  302 (721)
                      ..+.++.++++.+++.++..+.+.  ++.+|..|+++|..+++...  ..+  .+++..+++.+++.+.           
T Consensus       245 ~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~--~~~~~~l~p~ll~~l~~~e~d~~~~~~  320 (852)
T 4fdd_A          245 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVL--VRHLPKLIPVLVNGMKYSDIDIILLKG  320 (852)
T ss_dssp             HCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHH--TTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred             hCHHHHHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence            999999999999999998887665  78899999999999986421  112  2568888888888874           


Q ss_pred             cCCCCCCC----CCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHH
Q 004960          303 ESNEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES  378 (721)
Q Consensus       303 ~~~~~~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~  378 (721)
                      +.++|+++    ++|.+|.++..+++.++...++.+++.+++.+.+.+.+++|..|++|+.++|.+++++++.+.++++.
T Consensus       321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~  400 (852)
T 4fdd_A          321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE  400 (852)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred             CcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            21122222    46899999999999999999988899999999999999999999999999999999999888889999


Q ss_pred             HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc
Q 004960          379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF  457 (721)
Q Consensus       379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~  457 (721)
                      +++.+++.++|+++.||.+|+++++++++..++. ...++.++++.+++.+.+.++.||..|+++|.++++..+..+.||
T Consensus       401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~  480 (852)
T 4fdd_A          401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY  480 (852)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence            9999999999999999999999999999987542 345789999999999999999999999999999999998889999


Q ss_pred             hHHHHHHHHHhhcCCC----------------------------------------------hhHHHHHHHHHHHHHHHh
Q 004960          458 LDPLMGKLLAALENSP----------------------------------------------RNLQETCMSAIGSVAAAA  491 (721)
Q Consensus       458 ~~~i~~~l~~~l~~~~----------------------------------------------~~v~~~~l~~l~~l~~~~  491 (721)
                      ++.+++.|...++..+                                              +.++ .++++++.++...
T Consensus       481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~  559 (852)
T 4fdd_A          481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL  559 (852)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence            9999998888876433                                              2222 4678888888888


Q ss_pred             hhcchhhHHHHHHHHHHHHhcc--------------CchhhhhHHHHHHHHHHHHHhhchhhccCCh--HHHHHHHHhcc
Q 004960          492 EQAFIPYAERVLELLKIFMVLT--------------NDEDLRSRARATELLGLVAESVGRARMEPIL--PPFVEAAISGF  555 (721)
Q Consensus       492 ~~~~~~~~~~i~~~l~~~l~~~--------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l  555 (721)
                      |..+.||++.+++.+.+.+...              ..++...+..++..++.++..+|. .+.+++  +.+++.+..++
T Consensus       560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l  638 (852)
T 4fdd_A          560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCM  638 (852)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHh
Confidence            9999999999888665555321              122455777889999999999984 777776  68899999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccce
Q 004960          556 GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNI  635 (721)
Q Consensus       556 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (721)
                      +++++++|+.++.+++.++..+|..+.+|++.++|.+++.+..                                     
T Consensus       639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~-------------------------------------  681 (852)
T 4fdd_A          639 QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP-------------------------------------  681 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-------------------------------------
T ss_pred             CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-------------------------------------
Confidence            9889999999999999999999999999999999999976521                                     


Q ss_pred             eeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCC--ChhHHHHHHHHHHHHHHHHHHh
Q 004960          636 SVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAHAI  703 (721)
Q Consensus       636 ~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~  703 (721)
                          ...+.|..|++++|.++.++++.+.||++.+++.|.++++++  +..+++.|+.++|++.......
T Consensus       682 ----~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~  747 (852)
T 4fdd_A          682 ----EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE  747 (852)
T ss_dssp             ----TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ----cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHH
Confidence                113568999999999999999999999999999999998764  5789999999999998875443
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 721
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-66
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-06
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 7e-63
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 9e-14
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-62
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-25
d1wa5c_ 959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-50
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-46
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 3e-04
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-21
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-13
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-12
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-09
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-15
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_ 588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-07
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-05
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.001
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  234 bits (596), Expect = 1e-66
 Identities = 142/768 (18%), Positives = 282/768 (36%), Gaps = 66/768 (8%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKTP-NVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGHWA------------KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++    +            ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E  +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS------- 274
           V   AF    +++      +   ++  + ++L +++  +         ++  S       
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 275 ----WLAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDTM 326
                LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKE---KSY 440
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D             
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478

Query: 441 YALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--NLQETCMSAIGSVAAAAEQAFIPY 498
             +    E     I  F   L+  L+ A        N + +  SA+ ++   A       
Sbjct: 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538

Query: 499 AERVLELLKIFMVLTNDEDLRS-----RARATELLGLVAE--SVGRARMEPILPPFVEAA 551
           +  +   +   +  T   D             EL   +    +    +    + P  +  
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598

Query: 552 ISGFGLEF-----SELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGS--AV 604
           +  F         + + +      S +A  L  GF +YL    P    + N  D      
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSIT 658

Query: 605 DIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA 664
            +    D + +         +A      + IS      + K A     G  A +  + + 
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718

Query: 665 PFLEESLKILVRHASYFHEDVRYQAVFAL----KNILTAAHAIFQSHN 708
           P+L + + + V   +   E+   +A+       + +L A   I    +
Sbjct: 719 PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.97
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.97
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.96
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.96
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.95
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.94
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.81
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.75
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.68
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.68
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.64
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.63
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.57
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.57
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.38
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.36
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.01
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.01
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.9
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.78
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.78
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.49
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.17
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.72
d1w9ca_ 321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 97.31
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.09
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.86
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 95.0
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 94.27
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 94.08
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 93.74
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 93.72
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 93.53
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 91.12
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.6
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 90.49
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 90.16
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 89.76
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 89.22
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 89.2
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 88.31
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 86.91
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 82.09
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-55  Score=501.41  Aligned_cols=654  Identities=17%  Similarity=0.250  Sum_probs=519.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960            3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK   80 (721)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~--~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~   80 (721)
                      ++|.++|+.++|||+++|++|+++|+++.+.|+|..+|..++.+  +.+..+|++|+++|||.+.++|..++++.++.||
T Consensus        11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik   90 (888)
T d1qbkb_          11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK   90 (888)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            57888888889999999999999999999999999888888765  3467899999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc-----ccc
Q 004960           81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-----FRP  155 (721)
Q Consensus        81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~-----~~~  155 (721)
                      +.+++.|. ++++.+|+.++.+++.|++.+++. .||+++|.|.+.+.++++..+++++.+++.++++....     ...
T Consensus        91 ~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~-~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~  168 (888)
T d1qbkb_          91 SECLNNIG-DSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR  168 (888)
T ss_dssp             HHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSSC-SSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---C
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence            99999997 588999999999999999988774 89999999999999888888999999999999865432     233


Q ss_pred             cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960          156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE  235 (721)
Q Consensus       156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~  235 (721)
                      ..+.+++.+.+++++ +++.+|..|+.++..++......     +...++.+++.+.....+++++++..+++++..+++
T Consensus       169 ~~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~  242 (888)
T d1qbkb_         169 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQA-----LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLE  242 (888)
T ss_dssp             CSTTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCCCST-----TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSC
T ss_pred             HHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            456688899999998 88899999999998887655332     122233334444446677888999999999999999


Q ss_pred             CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccC-----------
Q 004960          236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES-----------  304 (721)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~-----------  304 (721)
                      ..+..+.++++.+++.++....+.  ++++|..|+++|..+++.......-.++++.+++.+...+...           
T Consensus       243 ~~~~~l~~~l~~i~~~~l~~~~~~--~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~  320 (888)
T d1qbkb_         243 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  320 (888)
T ss_dssp             SCTTTTTTTTTTTTTTTTTTTTSS--CHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTS
T ss_pred             HhHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhh
Confidence            888888888888888776665554  7889999999998887542211000122333322222111100           


Q ss_pred             ------------------------------------------CCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHH
Q 004960          305 ------------------------------------------NEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA  342 (721)
Q Consensus       305 ------------------------------------------~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l  342 (721)
                                                                ++++..++|+.|.++..+++.++...++.+++.+++.+
T Consensus       321 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l  400 (888)
T d1qbkb_         321 EEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLL  400 (888)
T ss_dssp             SCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHH
Confidence                                                      01112245889999999999999999988999999999


Q ss_pred             HhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH-HHhhhhHH
Q 004960          343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESVL  421 (721)
Q Consensus       343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~l  421 (721)
                      .+.+.+++|..|++|+.++|.+++++.+.+.++++++++.++..++|+++.||..++|++|+++++..+.. ..++..++
T Consensus       401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  480 (888)
T d1qbkb_         401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM  480 (888)
T ss_dssp             HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred             HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999998775433 35789999


Q ss_pred             HHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc--hhhH
Q 004960          422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF--IPYA  499 (721)
Q Consensus       422 ~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~--~~~~  499 (721)
                      +.+++.+.+++++|+..||++|..+++..+..+.||++.+++.+...+...+...+..++++++.++...+..+  .+|+
T Consensus       481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~  560 (888)
T d1qbkb_         481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI  560 (888)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH
Confidence            99999999999999999999999999999999999999999999999999888778888888888888877655  3567


Q ss_pred             HHHHHHHHHHHhccCchhhh---------------------------------------------------------hHH
Q 004960          500 ERVLELLKIFMVLTNDEDLR---------------------------------------------------------SRA  522 (721)
Q Consensus       500 ~~i~~~l~~~l~~~~~~~~~---------------------------------------------------------~~~  522 (721)
                      +.++|.+...++...+++..                                                         ...
T Consensus       561 ~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  640 (888)
T d1qbkb_         561 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI  640 (888)
T ss_dssp             HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            77777666555432221111                                                         111


Q ss_pred             HHHHHHHHHHHhhchhhccCChH--HHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCC
Q 004960          523 RATELLGLVAESVGRARMEPILP--PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD  600 (721)
Q Consensus       523 ~~~~~l~~l~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~  600 (721)
                      .++++++.++..+|. .+.+++.  .+++.+..++++.++++|+.++.+++.++..++..+.||++.++|.++..+.   
T Consensus       641 ~~l~~l~~l~~~l~~-~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~---  716 (888)
T d1qbkb_         641 VALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN---  716 (888)
T ss_dssp             HHHHHHHHHHHHHTT-TTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHhhh-hhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC---
Confidence            122233333333322 2222221  2556666777788999999999999999999999999999999999986542   


Q ss_pred             CCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccC
Q 004960          601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASY  680 (721)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  680 (721)
                                                            +...++|..|++++|+++.+.|+.+.||++.+++.|.+.+++
T Consensus       717 --------------------------------------~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~  758 (888)
T d1qbkb_         717 --------------------------------------PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR  758 (888)
T ss_dssp             --------------------------------------GGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTC
T ss_pred             --------------------------------------cCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcC
Confidence                                                  122357899999999999999999999999999999999875


Q ss_pred             --CChhHHHHHHHHHHHHHHHHHHhcccCC
Q 004960          681 --FHEDVRYQAVFALKNILTAAHAIFQSHN  708 (721)
Q Consensus       681 --~~~~vr~~a~~~l~~l~~~~~~~~~~~~  708 (721)
                        .+..|+..++.++|++....+....++.
T Consensus       759 ~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l  788 (888)
T d1qbkb_         759 PNTPKTLLENTAITIGRLGYVCPQEVAPML  788 (888)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             CCccHHHHHHHHHHHHHHHHHCHHHHHhhH
Confidence              4577999999999999887777665443
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure