Citrus Sinensis ID: 004967

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-

MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVVA

cccccccccccccccccEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccHHHHHcccHHHccccccccccccEEEEEEcccccEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHcccccccEEEccccccccccccccEEEEEEEEEEcEEEEEccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEcccccccccccccEEEEEEEcccccEEEEEccccccEEEEEcccccccccEEEEEEEEcccccccccEEEEEEcccccccccEEEEEEEcccEEEc

cccccccccccccHHHHHHEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcEEEccccccccHHHHHHccHHHHHHccccccccEEEEEEEEcccccEEEEEEEcccccccccccEEEEcccHHHHHHHHHHHHHHccccccccccEccccccccccEEccccHHHHHHHHHHHHccccccccccccccEEEEEEEEcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccEEEEcccccccccEEEcccccccEEEcccccccccccccccccccccHHHHHHHHHHccccHHHHHHcccccEEEEccccccccccccccEcEEEEEEcEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEcHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccEccccccccccccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEEcccccEEEc

MMGYANMEQIASGIHFRLRARTfivaepqgnrvVFVNLDACMASQIVKIKVIERLKARYgdlyteknvaisgihthagpggYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHenlrpgsifvnkgelldasisrspsaylnnpasergkykynVDKEMTLLKfvddqwgpvgsfnwfathgtsmsrtnslisgdnKGAAARFMEDWfeqsnaghssadelvsegiprrVSDIISDFRNNHHELLELAasfqsppgkaATKILSVARRVRGILReaekpgfvsafcqsncgdvspnvlgafcidsglpcdfnhstcggknemcygrgpgypdefestrIIGERQFRKAVDLFNKASEKlegkidyrhsyldfsqlevtipkqnggsetvktcpaamgfafaagttdgpgafdftqgddkgnpFWRLVRDLLkkpdkeqincqypkpilldtgemkqpydwapsilpiqilQVGQLVILsvpgefttmAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEgastlygphTLSAYIQEFKKLASALLsgqpvelgpqppdlldkqisfltpvvmdstpigvnfgdcksdvpqnttfrrgeMVTVSfwsacprndlmtegTFALVEILhgkdiwapayddddfclrfkwsrpsklsarsMATIewripdtaplgvyriRHFGAAKSLlgstrhftgsssafvva

MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISrspsaylnnpasergkYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFRNNHHELLElaasfqsppgkAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLlkkpdkeqincqypkpilldtGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVvtttgesnsnvHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDStpigvnfgdcksDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSrpsklsarsmatiewripdtaplgVYRIRHFGAAKSllgstrhftgsssafvva

MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCpaamgfafaagttdgpgafdFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVVA

********QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLD*******************KYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGT*******************FM*DW***********************SDIISDFRNNHHELLELAA********AATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQ*********DLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGST*************

*MG*****QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFRNNHHELLELAAS************LSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNE**Y*******DEFESTRIIGERQFRKAV************KIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLA*********************QISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVVA

****ANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVVA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		721	2.2.26 [Sep-21-2011]
Q304B9		757	Neutral ceramidase OS=Ara	no	no	0.986	0.939	0.749	0.0
Q0JL46		785	Neutral ceramidase OS=Ory	yes	no	0.994	0.913	0.721	0.0
Q55G11		718	Neutral ceramidase B OS=D	yes	no	0.895	0.899	0.440	1e-166
Q9VA70		704	Neutral ceramidase OS=Dro	yes	no	0.893	0.914	0.395	1e-149
Q29C43		704	Neutral ceramidase OS=Dro	yes	no	0.894	0.916	0.396	1e-148
Q5W7F1		743	Neutral ceramidase OS=Dan	yes	no	0.897	0.870	0.412	1e-148
Q9NR71		780	Neutral ceramidase OS=Hom	yes	no	0.895	0.828	0.408	1e-145
Q91XT9		761	Neutral ceramidase OS=Rat	yes	no	0.866	0.821	0.410	1e-139
P0C7U2		622	Putative neutral ceramida	no	no	0.826	0.958	0.400	1e-131
Q54BK2		714	Neutral ceramidase A OS=D	no	no	0.571	0.577	0.469	1e-106

>sp\|Q304B9\|NCASE_ARATH Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1	Back alignment and function desciption

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/722 (74%), Positives = 622/722 (86%), Gaps = 11/722 (1%)

Query: 1   MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG 60
           MMGYAN +QIASGIHFRLRAR FIVAEPQGNRVVFVNLDACMASQIV IKV+ERLKARYG
Sbjct: 44  MMGYANSDQIASGIHFRLRARAFIVAEPQGNRVVFVNLDACMASQIVTIKVLERLKARYG 103

Query: 61  DLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRP 120
           +LYTEKNVAISGIHTHAGPGGYLQYV YIVTSLGFVRQSFD +V+GIE+S++QAHE+LRP
Sbjct: 104 ELYTEKNVAISGIHTHAGPGGYLQYVTYIVTSLGFVRQSFDVVVNGIEQSIVQAHESLRP 163

Query: 121 GSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWF 180
           GS FVNKG+LLDA ++RSPS+YLNNPA+ER KYKY+VDKEMTL+KFVD Q GP GSFNWF
Sbjct: 164 GSAFVNKGDLLDAGVNRSPSSYLNNPAAERSKYKYDVDKEMTLVKFVDSQLGPTGSFNWF 223

Query: 181 ATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFR 240
           ATHGTSMSRTNSLISGDNKGAAARFMEDWFE     +   + + S  IPRRVS I+SDF 
Sbjct: 224 ATHGTSMSRTNSLISGDNKGAAARFMEDWFE-----NGQKNSVSSRNIPRRVSTIVSDFS 278

Query: 241 NNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVL 300
            N   LL++AA+++S  G +  K L V  RVR       K  FVSAFCQSNCGDVSPN L
Sbjct: 279 RNRDRLLDIAATYKSSRGHSVDKSLDVKTRVR----NGSKRKFVSAFCQSNCGDVSPNTL 334

Query: 301 GAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEK 360
           G FCID+GLPCDFNHSTC G+NE+CYGRGPGYPDEFESTRIIGE+QF+ AV+LFNKA+EK
Sbjct: 335 GTFCIDTGLPCDFNHSTCNGQNELCYGRGPGYPDEFESTRIIGEKQFKMAVELFNKATEK 394

Query: 361 LEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDD 420
           L+GKI Y+H+YLDFS L+VT+PK  GGSETVKTCPAAMGF FAAGTTDGPGAFDF QGDD
Sbjct: 395 LQGKIGYQHAYLDFSNLDVTVPKAGGGSETVKTCPAAMGFGFAAGTTDGPGAFDFKQGDD 454

Query: 421 KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVIL 480
           +GN FWRLVR++L+ P  EQ+ CQ PKPILLDTGEMK+PYDWAPSILPIQIL++GQLVIL
Sbjct: 455 QGNVFWRLVRNVLRTPGPEQVQCQKPKPILLDTGEMKEPYDWAPSILPIQILRIGQLVIL 514

Query: 481 SVPGEFTTMAGRRLRDAVKTVVTTTG--ESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRY 538
           SVPGEFTTMAGRRLRDA+K+ + ++   E ++N+HVV+AGLTN+YSQY+ TFEEY+VQRY
Sbjct: 515 SVPGEFTTMAGRRLRDAIKSFLISSDPKEFSNNMHVVIAGLTNTYSQYIATFEEYEVQRY 574

Query: 539 EGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIG 598
           EGASTLYG HTL+AYIQEFKKLA+AL++G  +  GPQPPDLLDKQIS L+PVV+DSTP+G
Sbjct: 575 EGASTLYGRHTLTAYIQEFKKLATALVNGLTLPRGPQPPDLLDKQISLLSPVVVDSTPLG 634

Query: 599 VNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDD 658
           V FGD K+DVP  +TFRRG+ V  +FWS CPRNDLMTEG+FA+VE L     WAP YDDD
Sbjct: 635 VKFGDVKADVPPKSTFRRGQQVNATFWSGCPRNDLMTEGSFAVVETLREGGKWAPVYDDD 694

Query: 659 DFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAF 718
           DF L+FKWSRP+KLS+ S ATIEWR+P++A  GVYRIRH+GA+KSL GS   F+GSSSAF
Sbjct: 695 DFSLKFKWSRPAKLSSESQATIEWRVPESAVAGVYRIRHYGASKSLFGSISSFSGSSSAF 754

Query: 719 VV 720
           VV
Sbjct: 755 VV 756

Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 3

>sp\|Q0JL46\|NCASE_ORYSJ Neutral ceramidase OS=Oryza sativa subsp. japonica GN=Os01g0624000 PE=1 SV=1	Back alignment and function description

>sp\|Q55G11\|NCSEB_DICDI Neutral ceramidase B OS=Dictyostelium discoideum GN=dcd2B PE=3 SV=1	Back alignment and function description

>sp\|Q9VA70\|NCASE_DROME Neutral ceramidase OS=Drosophila melanogaster GN=CDase PE=1 SV=1	Back alignment and function description

>sp\|Q29C43\|NCASE_DROPS Neutral ceramidase OS=Drosophila pseudoobscura pseudoobscura GN=CDase PE=3 SV=1	Back alignment and function description

>sp\|Q5W7F1\|ASAH2_DANRE Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV=1	Back alignment and function description

>sp\|Q9NR71\|ASAH2_HUMAN Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 SV=2	Back alignment and function description

>sp\|Q91XT9\|ASAH2_RAT Neutral ceramidase OS=Rattus norvegicus GN=Asah2 PE=1 SV=1	Back alignment and function description

>sp\|P0C7U2\|ASA2C_HUMAN Putative neutral ceramidase C OS=Homo sapiens GN=ASAH2C PE=2 SV=1	Back alignment and function description

>sp\|Q54BK2\|NCSEA_DICDI Neutral ceramidase A OS=Dictyostelium discoideum GN=dcd2A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		721
255558846		772	ceramidase, putative [Ricinus communis]	0.998	0.932	0.854	0.0
359478575		810	PREDICTED: neutral ceramidase-like [Viti	1.0	0.890	0.817	0.0
356552320		768	PREDICTED: neutral ceramidase-like isofo	0.998	0.937	0.818	0.0
357495253		792	Neutral ceramidase [Medicago truncatula]	0.998	0.909	0.786	0.0
356501679		768	PREDICTED: neutral ceramidase-like [Glyc	0.998	0.937	0.809	0.0
356552322		791	PREDICTED: neutral ceramidase-like isofo	0.998	0.910	0.791	0.0
449450776		778	PREDICTED: neutral ceramidase-like [Cucu	0.997	0.924	0.803	0.0
449496635		778	PREDICTED: LOW QUALITY PROTEIN: neutral	0.997	0.924	0.803	0.0
449455048		756	PREDICTED: neutral ceramidase-like [Cucu	0.998	0.952	0.796	0.0
255573907		780	ceramidase, putative [Ricinus communis]	0.991	0.916	0.785	0.0

>gi\|255558846\|ref\|XP_002520446.1\| ceramidase, putative [Ricinus communis] gi\|223540288\|gb\|EEF41859.1\| ceramidase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/721 (85%), Positives = 671/721 (93%), Gaps = 1/721 (0%)

Query: 1   MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG 60
           MMGYAN +QIASG+HFRLRARTFIVAEPQGNRVVFVNLDACMASQIV IKV+ERLKARYG
Sbjct: 51  MMGYANTDQIASGVHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVTIKVLERLKARYG 110

Query: 61  DLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRP 120
           DLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKS++QAH+NLRP
Sbjct: 111 DLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSIVQAHKNLRP 170

Query: 121 GSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWF 180
           GSIFVNKGELLDA ++RSPSAYLNNPA ER KYKY+VDKEMTLLKFVDD+WGP+GSFNWF
Sbjct: 171 GSIFVNKGELLDAGVNRSPSAYLNNPAEERNKYKYDVDKEMTLLKFVDDEWGPIGSFNWF 230

Query: 181 ATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFR 240
           ATHGTSMSRTNSLISGDNKGAAARFMEDWFE   AG S  DE V++  PRRVS II +  
Sbjct: 231 ATHGTSMSRTNSLISGDNKGAAARFMEDWFENKGAGISYFDESVADETPRRVSSIIPNMH 290

Query: 241 NNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVL 300
           +NHHELLELAASFQ+PPG+ ATKIL+VARRVR  LR+A+KPGFVSAFCQSNCGDVSPNVL
Sbjct: 291 DNHHELLELAASFQAPPGRPATKILNVARRVRSSLRQADKPGFVSAFCQSNCGDVSPNVL 350

Query: 301 GAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEK 360
           GAFCID+GLPCDFNHSTCGGKNE+CYGRGPGYPDEFESTRIIGERQFRKAV+LFNKASE+
Sbjct: 351 GAFCIDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTRIIGERQFRKAVELFNKASEE 410

Query: 361 LEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMGFAFAAGTTDGPGAFDFTQGDD 420
           L GK+DYRHSY+DFSQLEVT+PK+ GGSETVKTCPAAMGFAFAAGTTDGPGAFDF QGDD
Sbjct: 411 LNGKVDYRHSYIDFSQLEVTLPKEGGGSETVKTCPAAMGFAFAAGTTDGPGAFDFKQGDD 470

Query: 421 KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVIL 480
           KGN FWRLVR+ LK P+KEQI+CQ+PKPILLDTGEMKQPYDWAPS+LP+QI++VGQLVIL
Sbjct: 471 KGNTFWRLVRNFLKTPNKEQIDCQHPKPILLDTGEMKQPYDWAPSVLPVQIVRVGQLVIL 530

Query: 481 SVPGEFTTMAGRRLRDAVKTVVTTTG-ESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYE 539
           SVPGEFTTM+GR LRDAVKTV+T+   E N+NVHVV+AGLTN+YSQYVTTFEEY+VQRYE
Sbjct: 531 SVPGEFTTMSGRHLRDAVKTVLTSGNREFNNNVHVVIAGLTNTYSQYVTTFEEYEVQRYE 590

Query: 540 GASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGV 599
           GASTL+GPHTLSAYIQEFKKLA+AL+SGQ VE GPQPPDLL KQIS LTPVVMD+TP GV
Sbjct: 591 GASTLFGPHTLSAYIQEFKKLANALVSGQSVEPGPQPPDLLGKQISLLTPVVMDATPAGV 650

Query: 600 NFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDD 659
           NFGDC SDVP+N+TF+RG+ VTV FWSACPRNDLMTEGTFALVEIL G D W PAYDDDD
Sbjct: 651 NFGDCSSDVPKNSTFKRGDTVTVVFWSACPRNDLMTEGTFALVEILEGSDTWLPAYDDDD 710

Query: 660 FCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSAFV 719
           FCLRFKWSRPS+LS RS AT+EWRIP +A  GVYRIRHFGAAKSL+GS RHFTGSSSAFV
Sbjct: 711 FCLRFKWSRPSRLSTRSQATMEWRIPQSAKPGVYRIRHFGAAKSLMGSIRHFTGSSSAFV 770

Query: 720 V 720
           V
Sbjct: 771 V 771

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359478575\|ref\|XP_002279962.2\| PREDICTED: neutral ceramidase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356552320\|ref\|XP_003544516.1\| PREDICTED: neutral ceramidase-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|357495253\|ref\|XP_003617915.1\| Neutral ceramidase [Medicago truncatula] gi\|355519250\|gb\|AET00874.1\| Neutral ceramidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356501679\|ref\|XP_003519651.1\| PREDICTED: neutral ceramidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356552322\|ref\|XP_003544517.1\| PREDICTED: neutral ceramidase-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|449450776\|ref\|XP_004143138.1\| PREDICTED: neutral ceramidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449496635\|ref\|XP_004160185.1\| PREDICTED: LOW QUALITY PROTEIN: neutral ceramidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449455048\|ref\|XP_004145265.1\| PREDICTED: neutral ceramidase-like [Cucumis sativus] gi\|449472726\|ref\|XP_004153679.1\| PREDICTED: neutral ceramidase-like [Cucumis sativus] gi\|449516248\|ref\|XP_004165159.1\| PREDICTED: neutral ceramidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255573907\|ref\|XP_002527872.1\| ceramidase, putative [Ricinus communis] gi\|223532723\|gb\|EEF34503.1\| ceramidase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		721
TAIR\|locus:2025042		779	AT1G07380 [Arabidopsis thalian	0.998	0.924	0.761	1.4e-307
TAIR\|locus:2065685		792	AT2G38010 [Arabidopsis thalian	0.653	0.594	0.683	3.1e-287
TAIR\|locus:2154598		733	AT5G58980 [Arabidopsis thalian	0.715	0.703	0.697	2.5e-193
DICTYBASE\|DDB_G0268374		718	dcd2B "neutral/alkaline nonlys	0.599	0.601	0.467	1.3e-156
DICTYBASE\|DDB_G0293538		714	dcd2A "neutral/alkaline nonlys	0.603	0.609	0.431	1.8e-144
ZFIN\|ZDB-GENE-041112-1		743	asah2 "N-acylsphingosine amido	0.599	0.581	0.418	1.4e-142
UNIPROTKB\|E2QVL9		782	ASAH2 "Uncharacterized protein	0.575	0.530	0.429	1.5e-140
UNIPROTKB\|F1NN67		779	ASAH2 "Uncharacterized protein	0.590	0.546	0.426	2.4e-140
UNIPROTKB\|Q9NR71		780	ASAH2 "Neutral ceramidase" [Ho	0.589	0.544	0.42	1.1e-137
UNIPROTKB\|E1BJU5		756	ASAH2 "Uncharacterized protein	0.578	0.551	0.423	5.8e-137

TAIR\|locus:2025042 AT1G07380 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2951 (1043.9 bits), Expect = 1.4e-307, P = 1.4e-307
 Identities = 551/724 (76%), Positives = 622/724 (85%)

Query:     1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG 60
             MMGYANMEQ+ASGIHFRLRARTFIV+EPQG RVVFVNLDACMASQIVK+KVIERLKARYG
Sbjct:    55 MMGYANMEQVASGIHFRLRARTFIVSEPQGKRVVFVNLDACMASQIVKLKVIERLKARYG 114

Query:    61 DLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRP 120
             DLYTE+NV ISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIE S++QAHENLRP
Sbjct:   115 DLYTEQNVGISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIENSIIQAHENLRP 174

Query:   121 GSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNWF 180
             GSIF+N GELLDA ++RSPSAYLNNP+ ER K+KYNVDKEMTLLKFVDDQWGPVGSFNWF
Sbjct:   175 GSIFLNNGELLDAGVNRSPSAYLNNPSKERSKHKYNVDKEMTLLKFVDDQWGPVGSFNWF 234

Query:   181 ATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDFR 240
             ATHGTSMSRTNSLISGDNKGAA+RFMEDW+EQ+ A  S ++E +S+ IPRRVS +I + +
Sbjct:   235 ATHGTSMSRTNSLISGDNKGAASRFMEDWYEQNTAERSYSEEFISDEIPRRVSSLIENHQ 294

Query:   241 NNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVL 300
             ++HHELLELA+ F+S PGK  T+I S ARRVR  LR+A+KPGFVSAFCQ+NCGDVSPNVL
Sbjct:   295 DSHHELLELASYFESQPGKPVTRISSSARRVRSALRKADKPGFVSAFCQTNCGDVSPNVL 354

Query:   301 GAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEK 360
             GAFC+D+GLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQF+ A++LFNKASE+
Sbjct:   355 GAFCLDTGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEQ 414

Query:   361 LEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDD 420
             L+GK+DYRH Y+DFSQL VT+PK++G SE VKTC                    FTQGDD
Sbjct:   415 LQGKVDYRHVYVDFSQLNVTLPKKDGKSEVVKTCPAAMGFAFAAGTTDGPGAFDFTQGDD 474

Query:   421 KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVIL 480
             KGNPFWRLVR++LK PDK+QI+C YPKPILLDTGEM +PYDWAPSIL +Q+L++GQL IL
Sbjct:   475 KGNPFWRLVRNVLKTPDKKQIDCHYPKPILLDTGEMTKPYDWAPSILSLQVLRIGQLFIL 534

Query:   481 SVPGEFTTMAGRRLRDAVKTVVTTTGESN--SNVHVVLAGLTNSYSQYVTTFEEYQVQRY 538
             SVPGEFTTMAGRRLR AVKT +  +G  +    +HVV+AGL N YSQYVTTFEEYQVQRY
Sbjct:   535 SVPGEFTTMAGRRLRYAVKTQLKNSGNKDLSGEIHVVIAGLANGYSQYVTTFEEYQVQRY 594

Query:   539 EGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIG 598
             EGASTLYGPHTLS YIQEFKKL+ +L+   PV+ GPQPPDLLDKQ+SFLTPV+MD+TP G
Sbjct:   595 EGASTLYGPHTLSGYIQEFKKLSKSLVLDMPVQPGPQPPDLLDKQLSFLTPVMMDTTPSG 654

Query:   599 VNFGDCKSDVPQNTTFRRGE-MVTVSFWSACPRNDLMTEGTFALVEILHGKD-IWAPAYD 656
              +FGD  SDVP+N + +RG   VTV F SACPRNDL+TEGTF LVE L  KD  W P YD
Sbjct:   655 DSFGDVISDVPKNLSLKRGNGQVTVVFRSACPRNDLLTEGTFTLVERLEQKDKTWTPVYD 714

Query:   657 DDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSS 716
             DDD CLRFKWSR  KLS+RS AT+EWRIP++A  GVYRI HFGAAK L GS  HFTGSSS
Sbjct:   715 DDDLCLRFKWSRHKKLSSRSQATVEWRIPESASPGVYRITHFGAAKKLFGSVHHFTGSSS 774

Query:   717 AFVV 720
             AFVV
Sbjct:   775 AFVV 778

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0017040 "ceramidase activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR\|locus:2065685 AT2G38010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154598 AT5G58980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268374 dcd2B "neutral/alkaline nonlysosomal ceramidase family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0293538 dcd2A "neutral/alkaline nonlysosomal ceramidase family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041112-1 asah2 "N-acylsphingosine amidohydrolase 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QVL9 ASAH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NN67 ASAH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NR71 ASAH2 "Neutral ceramidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJU5 ASAH2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JL46	NCASE_ORYSJ	3, ., 5, ., 1, ., 2, 3	0.7215	0.9944	0.9133	yes	no
Q55G11	NCSEB_DICDI	3, ., 5, ., 1, ., 2, 3	0.4409	0.8959	0.8997	yes	no
Q9NR71	ASAH2_HUMAN	3, ., 5, ., 1, ., 2, 3	0.4084	0.8959	0.8282	yes	no
O06769	NCASE_MYCTU	3, ., 5, ., 1, ., 2, 3	0.3245	0.8502	0.9623	yes	no
Q29C43	NCASE_DROPS	3, ., 5, ., 1, ., 2, 3	0.3964	0.8945	0.9161	yes	no
Q9VA70	NCASE_DROME	3, ., 5, ., 1, ., 2, 3	0.3956	0.8932	0.9147	yes	no
Q304B9	NCASE_ARATH	3, ., 5, ., 1, ., 2, 3	0.7493	0.9861	0.9392	no	no
Q5W7F1	ASAH2_DANRE	3, ., 5, ., 1, ., 2, 3	0.4120	0.8973	0.8707	yes	no
Q91XT9	ASAH2_RAT	3, ., 5, ., 1, ., 2, 3	0.4101	0.8668	0.8212	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	0.983
3rd Layer	3.5.1.23	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024181001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (773 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		721
pfam04734		672	pfam04734, Ceramidase_alk, Neutral/alkaline non-ly	0.0
PTZ00487		715	PTZ00487, PTZ00487, ceramidase; Provisional	1e-168
pfam04734		672	pfam04734, Ceramidase_alk, Neutral/alkaline non-ly	1e-127
PTZ00487		715	PTZ00487, PTZ00487, ceramidase; Provisional	2e-76

>gnl\|CDD\|218235 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase	Back alignment and domain information

 Score =  735 bits (1899), Expect = 0.0
 Identities = 264/445 (59%), Positives = 311/445 (69%), Gaps = 9/445 (2%)

Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337
               GFV+AF QSN GDVSPNVLGA+C D   PC FN STCGGK+E C+GRGPG  DEFE
Sbjct: 235 PGAGGFVAAFAQSNVGDVSPNVLGAWCEDGSGPCCFNSSTCGGKSEACHGRGPG-DDEFE 293

Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAA 397
           STRIIG RQF  A +L++ ASE++ G +D RH Y+D S   VT P   G  ETV+TCPAA
Sbjct: 294 STRIIGRRQFAAAKELYDNASEEVTGPVDSRHQYVDMSNYTVT-PPFTGDGETVRTCPAA 352

Query: 398 MGFAFAAGTTDGPGAFDFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGE 455
           +G++FAAGTTDGPGAFDFTQGD    GNP W  VRDLL  P +EQ  CQ PKPILLDTGE
Sbjct: 353 LGYSFAAGTTDGPGAFDFTQGDTGATGNPLWDAVRDLLAVPTQEQKACQAPKPILLDTGE 412

Query: 456 MKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVV 515
           M  PY W P+I+P+Q+L++GQL I++VPGEFTTMAGRRLR+AV   +   G +    HVV
Sbjct: 413 MTFPYPWVPNIVPVQLLRIGQLAIVAVPGEFTTMAGRRLREAVAAAL---GAAGIKPHVV 469

Query: 516 LAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQ 575
           +AGL N+Y+ YVTT EEY +QRYEGASTL+GPHTL+AYIQEF +LA AL  G PV  GP 
Sbjct: 470 IAGLANAYAHYVTTPEEYAIQRYEGASTLFGPHTLAAYIQEFLRLAPALADGAPVPPGPS 529

Query: 576 PPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMT 635
           PPD  DKQ+S +T VV D  PIG +FGD  +    N ++RRGE V+V+F  A PRN+L T
Sbjct: 530 PPDNTDKQLSLITGVVFDGKPIGKSFGDVLTQP--NPSYRRGETVSVTFVGANPRNNLRT 587

Query: 636 EGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRI 695
           EGTF  VE L     W     D D+  RF+W R   L   S  TIEW IPD  P G YRI
Sbjct: 588 EGTFLAVERLEAGGTWVTVATDADWETRFRWKRTGTLLGTSEVTIEWEIPDDTPPGTYRI 647

Query: 696 RHFGAAKSLLGSTRHFTGSSSAFVV 720
           RHFG  KS LG  + F G+S AF V
Sbjct: 648 RHFGDWKSGLGGKKPFEGTSRAFTV 672

This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes. Length = 672

>gnl\|CDD\|240437 PTZ00487, PTZ00487, ceramidase; Provisional	Back alignment and domain information

>gnl\|CDD\|218235 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase	Back alignment and domain information

>gnl\|CDD\|240437 PTZ00487, PTZ00487, ceramidase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		721
KOG2232		734	consensus Ceramidases [Signal transduction mechani	100.0
PTZ00487		715	ceramidase; Provisional	100.0
PF04734		674	Ceramidase_alk: Neutral/alkaline non-lysosomal cer	100.0
COG3356		578	Predicted membrane protein [Function unknown]	97.41
PF09843		179	DUF2070: Predicted membrane protein (DUF2070); Int	97.31
PF01835		99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.75

>KOG2232 consensus Ceramidases [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=2.1e-196  Score=1557.32  Aligned_cols=675  Identities=75%  Similarity=1.219  Sum_probs=655.0

Q ss_pred             CCcccCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 004967            1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG   80 (721)
Q Consensus         1 m~GYa~~~q~a~Gvhd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP~   80 (721)
                      ||||++.+|.+.|||.||+|||||++++.++|++||++|.+|+.+.++.+|.+||+++||++|.++||.||+||||+||+
T Consensus        50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg  129 (734)
T KOG2232|consen   50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG  129 (734)
T ss_pred             eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence            89999999999999999999999999987899999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeccccccCCchhccCCChhhcccCCCCCCCe
Q 004967           81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE  160 (721)
Q Consensus        81 g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~NP~~er~~y~g~vD~~  160 (721)
                      ||++|.+|.++++||+++.|+.++++|.++|.+||+||+|++|.+++|++.++++|||+.+|++||.+||++|+.++|++
T Consensus       130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe  209 (734)
T KOG2232|consen  130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE  209 (734)
T ss_pred             ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCeEE---EEEeeeccccccC---CCCcccc---CCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcc
Q 004967          161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR  231 (721)
Q Consensus       161 l~vL~f~~~dG~~ia---~L~~yA~HpTsl~---~~N~lIS---~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~  231 (721)
                      |++|||+|..+.++|   +..||++|+++|+   +.|+++|   +|+.||++++||++.+.                   
T Consensus       210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~-------------------  270 (734)
T KOG2232|consen  210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNP-------------------  270 (734)
T ss_pred             eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCc-------------------
Confidence            999999999899999   5999999999999   8899999   99999999999997532                   


Q ss_pred             ccccccccccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEEeccccCCCCCCCCCCccccCCCCC
Q 004967          232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC  311 (721)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~c~d~g~~c  311 (721)
                                            .+.+||.+++.++++|++|    ...++.||+||||+|+||||||++|++|.|||+||
T Consensus       271 ----------------------~~~pG~~v~~~~~~~~rvr----~~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C  324 (734)
T KOG2232|consen  271 ----------------------NSMPGKSVTRSSSVARRVR----NADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC  324 (734)
T ss_pred             ----------------------ccCCCcccccchhhhhhhh----cccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence                                  3567999999999999997    57788999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccccceeEEEEEeeceeeeecCCCCCCCccc
Q 004967          312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV  391 (721)
Q Consensus       312 ~~~~s~c~g~~~~~~~~GP~~~d~~e~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~  391 (721)
                      ||++|||+|++++|+++||+++||||+++|||+|||+.|++||++++++++|+|+++|+||||++++|.++...+..+.+
T Consensus       325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v  404 (734)
T KOG2232|consen  325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV  404 (734)
T ss_pred             ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887888999


Q ss_pred             cccccccchhhhhccCCCCCCccccCCCCCCChhHHHHhhhhcCCChhhhcccCCcceeecCCCCCCCCCCCCCceeeeE
Q 004967          392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQI  471 (721)
Q Consensus       392 ~tc~~a~G~sfaagt~dgpg~~~f~qg~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~v~iqi  471 (721)
                      +||||||||||||||+||||+|+|+||++.+||||+++|++++.|++|+++||.||||||+||+|++||+|.|.||++||
T Consensus       405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi  484 (734)
T KOG2232|consen  405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI  484 (734)
T ss_pred             ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCEEEEecCCchhhHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCccccCChhhhccCceeeeeeccCCCcHH
Q 004967          472 LQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLS  551 (721)
Q Consensus       472 lriG~l~iv~~PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~G~aN~y~~YitT~eeY~~q~YEg~sT~yGp~tl~  551 (721)
                      ||||+|+|++||||||||+|||||++|++.+.+.+. ..+.+|+|+||+|.|++||+|+|||++||||||||+||||||.
T Consensus       485 lriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~-~~~~~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGpHtlS  563 (734)
T KOG2232|consen  485 LRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGN-SINMHVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGPHTLS  563 (734)
T ss_pred             eeeccEEEEecCccceehhhHHHHHHHHHHHHhcCC-CcceEEEEeccccchhhhcccHHHHhHHHhhccccccCcchhh
Confidence            999999999999999999999999999999987654 2478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccCCcccCCCCCCCCCcceeecCCCCCcccCCCeEEEEEEcccCCC
Q 004967          552 AYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRN  631 (721)
Q Consensus       552 ay~q~~~~La~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~~~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~~~Prn  631 (721)
                      +|||+|++|+++|..+..+++||+|||+.++|+++++||++|..|.|..||||+.|++.++.|+.|+.|+|+|++|||||
T Consensus       564 ~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~D~tP~g~~FGdV~s~vp~k~~~r~g~~v~v~f~sanPrN  643 (734)
T KOG2232|consen  564 AYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVVDGTPIGTDFGDVKSDVPNKSYFRRGTQVKVTFRSANPRN  643 (734)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceeeccCccCCccccccCCCCCchhhccccEEEEEEeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999766788999999999999999999


Q ss_pred             CCCCCCCeEEEEEEeCCCc-eEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEeccccccCCCcee
Q 004967          632 DLMTEGTFALVEILHGKDI-WAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRH  710 (721)
Q Consensus       632 ~l~~~~tf~~Ver~~~~~~-W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~  710 (721)
                      ||++|+||++|||+.+++. |++|+||+||+|||+|+|++.|++.|++||+|+||+.+.||.|||||||.+|.++|.|.+
T Consensus       644 dl~Te~Tf~~VEr~~~~~~tW~~vydD~~~~~rf~W~r~~kl~~~S~atieW~Ipeta~pGvYRIrhfG~~k~ilg~i~~  723 (734)
T KOG2232|consen  644 DLMTEGTFATVERLEEGDKTWKPVYDDDDWELRFKWSRPNKLSGFSQATIEWRIPETASPGVYRIRHFGAAKKILGSIHS  723 (734)
T ss_pred             ccccccceeeehhhhccCceeeeeecCccceeEEEeccCccccccccceEEEecCCcCCCceEEEEeccccccccccccc
Confidence            9999999999999987766 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeccceEEC
Q 004967          711 FTGSSSAFVVA  721 (721)
Q Consensus       711 ~~g~s~~F~v~  721 (721)
                      |+|+|+.|+|.
T Consensus       724 f~Gss~aF~V~  734 (734)
T KOG2232|consen  724 FEGSSSAFVVV  734 (734)
T ss_pred             cccCccceEeC
Confidence            99999999985

>PTZ00487 ceramidase; Provisional	Back alignment and domain information

>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]	Back alignment and domain information

>COG3356 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase	Back alignment and domain information

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		721
2zxc_A		646	Seramidase Complexed With C2 Length = 646		2e-66

>pdb|2ZXC|A Chain A, Seramidase Complexed With C2 Length = 646

Back alignment and structure

Iteration: 1

Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 168/447 (37%), Positives = 233/447 (52%), Gaps = 52/447 (11%) Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337 + K GFV+AF Q+N G++SPN+ + G GP + +EF+ Sbjct: 232 SRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNEFD 267 Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXX 397 +TR IG RQF KA ++ +A E++ G++D R ++DF++L + +G + T Sbjct: 268 NTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIG 327 Query: 398 XXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDTGEM 456 ++ NPF + LL P +E + CQ K IL DTG Sbjct: 328 TSLAAGSTEDGPGPLGL----EEGNNPFLSALGGLLTGVPPQELVQCQAEKTILADTGN- 382 Query: 457 KQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVL 516 K+PY W P++LPIQ+ ++GQL +L P EFT MAG R+R AV+ G HVV Sbjct: 383 KKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIR----HVVF 438 Query: 517 AGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQP 576 G N+Y+ YVTT EEY Q YEG STLYGP T +AY Q F +A AL PVE Sbjct: 439 NGYANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIA 498 Query: 577 PDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTE 636 PDL Q++F T VV D IG +FGD P+ ++R G+ VTV+F + P+NDL TE Sbjct: 499 PDLSCCQMNFQTGVVADDPYIGKSFGDVLQQ-PRE-SYRIGDKVTVAFVTGHPKNDLRTE 556 Query: 637 GTFALVEILH----GKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGV 692 TF +E+++ GK D+D+ +++W R +SA S ATI W IP G Sbjct: 557 KTF--LEVVNIGKDGKQTPVTVATDNDWDTQYRWER-VGISA-SKATISWSIPPGTEPGH 612 Query: 693 YRIRHFGAAKSLL--------GSTRHF 711 Y IRH+G AK+ GSTR F Sbjct: 613 YYIRHYGNAKNFWTQKISEIGGSTRSF 639

PyMOL of 2zxc

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		721
2zws_A		646	Neutral ceramidase; prism fold and beta-sandwich f	1e-141
2zws_A		646	Neutral ceramidase; prism fold and beta-sandwich f	4e-69
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A* Length = 646	Back alignment and structure

 Score =  428 bits (1100), Expect = e-141
 Identities = 176/450 (39%), Positives = 242/450 (53%), Gaps = 43/450 (9%)

Query: 276 REAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDE 335
             + K GFV+AF Q+N G++SPN+                        +  G GP + +E
Sbjct: 230 DVSRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNE 265

Query: 336 FESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCP 395
           F++TR IG RQF KA ++  +A E++ G++D R  ++DF++L +     +G  +  + C 
Sbjct: 266 FDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDG--QPRQLCT 323

Query: 396 AAMGFAFAAGTT-DGPGAFDFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDT 453
           AA+G + AAG+T DGPG     +G+   NPF   +  LL   P +E + CQ  K IL DT
Sbjct: 324 AAIGTSLAAGSTEDGPGPLGLEEGN---NPFLSALGGLLTGVPPQELVQCQAEKTILADT 380

Query: 454 GEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVH 513
           G  K PY W P++LPIQ+ ++GQL +L  P EFT MAG R+R AV+      G      H
Sbjct: 381 GNKK-PYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIR----H 435

Query: 514 VVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELG 573
           VV  G  N+Y+ YVTT EEY  Q YEG STLYGP T +AY Q F  +A AL    PVE  
Sbjct: 436 VVFNGYANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETS 495

Query: 574 PQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDL 633
              PDL   Q++F T VV D   IG +FGD         ++R G+ VTV+F +  P+NDL
Sbjct: 496 AIAPDLSCCQMNFQTGVVADDPYIGKSFGDVLQQP--RESYRIGDKVTVAFVTGHPKNDL 553

Query: 634 MTEGTFALVEILH--GKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLG 691
            TE TF  V  +   GK        D+D+  +++W R     + S ATI W IP     G
Sbjct: 554 RTEKTFLEVVNIGKDGKQTPVTVATDNDWDTQYRWERVG--ISASKATISWSIPPGTEPG 611

Query: 692 VYRIRHFGAAKSLL-GSTRHFTGSSSAFVV 720
            Y IRH+G AK+          GS+ +F V
Sbjct: 612 HYYIRHYGNAKNFWTQKISEIGGSTRSFEV 641

PyMOL of 2zws

>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A* Length = 646	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		721
2zws_A		646	Neutral ceramidase; prism fold and beta-sandwich f	100.0
2p9r_A		102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	94.89
4fxk_A		656	Complement C4 beta chain; immune system, proteolyt	82.56

>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*	Back alignment and structure

Probab=100.00  E-value=1.8e-156  Score=1352.04  Aligned_cols=614  Identities=43%  Similarity=0.716  Sum_probs=572.6

Q ss_pred             CCcccCCCCccceeecceEEEEEEEEeC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCC
Q 004967            1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP   79 (721)
Q Consensus         1 m~GYa~~~q~a~Gvhd~L~ARAlvl~d~-~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP   79 (721)
                      ||||+.+.|+++|||||||||||||+++ +++|+|||++|++|+++.++++|+++|+++||++|+.+||+||+|||||||
T Consensus        23 m~GYa~~~q~a~Gihd~L~aRA~vl~d~~~~~rvv~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~~~~nV~isaTHTHSgP  102 (646)
T 2zws_A           23 MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKYPGVYDENNVMLAATHTHSGP  102 (646)
T ss_dssp             EESSCCTTCEEEEESSCCEEEEEEEEESSSCCEEEEEEESSSCCCHHHHHHHHHHHHHHSTTTCCTTTEEEEECCBSBEE
T ss_pred             ecCccccCccccceecceEEEEEEEEcCCCCCEEEEEEECcccCCHHHHHHHHHHHHHHhCCCCChhHEEEEeeeeCCCC
Confidence            8999999999999999999999999984 389999999999999999999999999999998899999999999999999


Q ss_pred             CcCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeccccccCCchhccCCChhhcccCCCCCCC
Q 004967           80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK  159 (721)
Q Consensus        80 ~g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~NP~~er~~y~g~vD~  159 (721)
                      ++|+++.+++++..||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||  ||++|++++||
T Consensus       103 ~g~~~~~l~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~pa~l~~g~g~~~~~~~NRs~~ay~~NP--er~~~~g~vD~  180 (646)
T 2zws_A          103 GGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDP  180 (646)
T ss_dssp             CCCCSSHHHHGGGTBCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSSEEESCHHHHTTCS--CCTTCTTSCCC
T ss_pred             cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeCcceecCChhhhhcCc--cccccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  89999999999


Q ss_pred             eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 004967          160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF  239 (721)
Q Consensus       160 ~l~vL~f~~~dG~~ia~L~~yA~HpTsl~~~N~lIS~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +|++|+|++.||+++|+|+|||||||+|+++|++||+||+|+++++||+.+++                           
T Consensus       181 ~~~vL~f~~~dg~~ig~l~~fA~HpTsl~~~N~liS~D~~G~a~~~lE~~~~~---------------------------  233 (646)
T 2zws_A          181 QMSVLSFVDANGELAGAISWFPVHSTSMTNANHLISPDNKGYASYHWEHDVSR---------------------------  233 (646)
T ss_dssp             EEEEEEEEETTCCEEEEEEECCCCBCSSCTTCCEEBCHHHHHHHHHHHHTTCC---------------------------
T ss_pred             ceEEEEEEeCCCCEEEEEEEEccCceecCCCCCeecCccHHHHHHHHHHHhCC---------------------------
Confidence            99999999999999999999999999999999999999999999999997531                           


Q ss_pred             ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEEeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 004967          240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG  319 (721)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~c~d~g~~c~~~~s~c~  319 (721)
                                                              .++||++|+|||+||||||+.                   
T Consensus       234 ----------------------------------------~~~fva~F~qg~~GDvsP~~~-------------------  254 (646)
T 2zws_A          234 ----------------------------------------KSGFVAAFAQTNAGNLSPNLN-------------------  254 (646)
T ss_dssp             ----------------------------------------STTCEEEEECSSCTTEEECCC-------------------
T ss_pred             ----------------------------------------CCCeEEEEeccCcccCCcccc-------------------
Confidence                                                    257999999999999999975                   


Q ss_pred             CCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccccceeEEEEEeeceeeeecCCCCCCCccccccccccc
Q 004967          320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG  399 (721)
Q Consensus       320 g~~~~~~~~GP~~~d~~e~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~~tc~~a~G  399 (721)
                          +|+++||++ ++++++++||++|+++|++++++..++++|+|+++|++|||+++++.++.+  +++.++||++|||
T Consensus       255 ----~~~~~Gp~~-~~~e~~~~iG~~~~~~a~~~l~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~--~g~~~~tc~~a~g  327 (646)
T 2zws_A          255 ----LKPGSGPFD-NEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFT--DGQPRQLCTAAIG  327 (646)
T ss_dssp             ----CCTTCCTTS-CHHHHHHHHHHHHHHHHHHHHHHCCEEECSCEEEEEEEEECTTCEECGGGS--SSSCEECCCCCEE
T ss_pred             ----ccccCCCCc-ccHHHHHHHHHHHHHHHHHHHhhccccccCCcceEEEEecCcceeeecccC--Ccccceechhhhc
Confidence                366889987 899999999999999999999887788999999999999999999987654  4478999999999


Q ss_pred             hhhhhcc-CCCCCCccccCCCCCCChhHHHHhhhhcCC-ChhhhcccCCcceeecCCCCCCCCCCCCCceeeeEEEECCE
Q 004967          400 FAFAAGT-TDGPGAFDFTQGDDKGNPFWRLVRDLLKKP-DKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQL  477 (721)
Q Consensus       400 ~sfaagt-~dgpg~~~f~qg~~~~~p~w~~~~~~~~~p-~~~~~~cq~pKpill~~G~~~~p~~~~p~~v~iqilriG~l  477 (721)
                      ++|+||+ +||||.|+|+|+ +  ||+|+.+++++.+| ++|+++||+||||||++|+ +.||+|+|.+++||+||||+|
T Consensus       328 ~s~aag~~~dgpg~~~f~q~-~--~~~w~~~~~~l~~~~~~~~~~cq~~k~ill~~g~-~~p~~~~~~~v~vqilriGdl  403 (646)
T 2zws_A          328 TSLAAGSTEDGPGPLGLEEG-N--NPFLSALGGLLTGVPPQELVQCQAEKTILADTGN-KKPYPWTPTVLPIQMFRIGQL  403 (646)
T ss_dssp             C---------------CCSS-C--CHHHHHTTCSCCCCCCHHHHHHTTTCCEEECCTT-CSSSCSSCSEEEEEEEEETTE
T ss_pred             hhhhcCCcccCCCccccccc-c--chhhhhhhhhhccccchhHHhhccCcceecccCC-CCCcccccceEEEEEEEECCE
Confidence            9999999 999999999999 4  99999999999988 7999999999999999999 899999999999999999999


Q ss_pred             EEEecCCchhhHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCccccCChhhhccCceeeeeeccCCCcHHHHHHHH
Q 004967          478 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEF  557 (721)
Q Consensus       478 ~iv~~PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~G~aN~y~~YitT~eeY~~q~YEg~sT~yGp~tl~ay~q~~  557 (721)
                      +|+++|||+|+|+|+|||+++++.+.+. +   ...|+|+||+|+|+|||||+|||+.|+|||+||+|||+|+++|+|++
T Consensus       404 ~iv~~PgE~tt~~G~rlr~~~~~~~~~~-~---~~~v~v~GyaN~y~gYi~T~EeY~~q~YEg~sT~~gp~tl~~~i~~~  479 (646)
T 2zws_A          404 ELLGAPAEFTVMAGVRIRRAVQAASEAA-G---IRHVVFNGYANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLF  479 (646)
T ss_dssp             EEEECSSEECHHHHHHHHHHHHHHHGGG-T---CCEEEEECSBSSCCCEECCHHHHHHCCTTTTSCTTCTTHHHHHHHHH
T ss_pred             EEEecCcHHHHHHHHHHHHHHHhhhccC-C---CceEEEEecCCCCCCccCCHHHHhcCCccceeeecCCChHHHHHHHH
Confidence            9999999999999999999999877553 3   37999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCccccccccccCCcccCCCCCCCCCcceeecCCCCCcccCCCeEEEEEEcccCCCCCCCCC
Q 004967          558 KKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEG  637 (721)
Q Consensus       558 ~~La~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~~~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~~~Prn~l~~~~  637 (721)
                      .+|+++|.+|+++++||+|||++.++++|+++|++|.+|+|++||||++||  +++|++|++|+|+|++||||||||+++
T Consensus       480 ~~L~~~l~~~~~~~~g~~p~~~~~~~~~~~~~v~~d~~p~~~~fg~v~~~~--~~~y~~g~~v~~~f~~~~p~n~~~~~~  557 (646)
T 2zws_A          480 VDMAVALRERLPVETSAIAPDLSCCQMNFQTGVVADDPYIGKSFGDVLQQP--RESYRIGDKVTVAFVTGHPKNDLRTEK  557 (646)
T ss_dssp             HHHHHHHHHCCCCCCCCCCCCCGGGCCBCCCCCCCCCCCTTCCTTCEEECC--CSEEETTCEEEEEEECCCGGGCCCTTS
T ss_pred             HHHHHHHhcCCCCCCCCCCccccccccccCCCCccCCCCCCCCCCcEeecC--cccccCCCEEEEEEEccCCCcccccCC
Confidence            999999999999999999999999999999999999999999999999999  679999999999999999999999999


Q ss_pred             CeEEEEEEeCCCceE--EeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEeccccc-cCCCceeeEEe
Q 004967          638 TFALVEILHGKDIWA--PAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKS-LLGSTRHFTGS  714 (721)
Q Consensus       638 tf~~Ver~~~~~~W~--~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~-~~g~~~~~~g~  714 (721)
                      ||++|||+.++++|+  +|+||+||+|+|+|+|++.  ++|++||+|+||++++||+|||+|||+||+ +.|+|+||+|+
T Consensus       558 t~~~ve~~~~~~~w~~~~v~~D~d~~t~~~w~r~~~--~~s~~~~~W~i~~~~~~g~yRi~~~g~~k~~~~g~~~~~~g~  635 (646)
T 2zws_A          558 TFLEVVNIGKDGKQTPVTVATDNDWDTQYRWERVGI--SASKATISWSIPPGTEPGHYYIRHYGNAKNFWTQKISEIGGS  635 (646)
T ss_dssp             CSEEEEEEESSSCCCCEEEEETTSTTEEEEEEEETT--TEEEEEEEEECCTTCCSEEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             ceEEEEEecCCCceEEEEEecCCCccEEEEEEeCCC--CceEEEEEEECCCCCCCcceEEEEEcccccccCCCceeeEEe
Confidence            999999977789999  9999999999999999984  899999999999999999999999999999 99999999999


Q ss_pred             ccceEEC
Q 004967          715 SSAFVVA  721 (721)
Q Consensus       715 s~~F~v~  721 (721)
                      |++|+|.
T Consensus       636 s~~f~v~  642 (646)
T 2zws_A          636 TRSFEVL  642 (646)
T ss_dssp             CCCEEEE
T ss_pred             cccEEEe
Confidence            9999984

PyMOL of 2zws

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}	Back alignment and structure

>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00