Citrus Sinensis ID: 005008

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc
MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGI
MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL*********
***DLQIKVAQAVHVLNHD*****RVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS*****KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG**********ATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
*QMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDES*****GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
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MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query719 2.2.26 [Sep-21-2011]
Q6P2B1 923 Transportin-3 OS=Mus musc yes no 0.898 0.699 0.232 2e-26
Q9Y5L0 923 Transportin-3 OS=Homo sap yes no 0.898 0.699 0.232 2e-26
Q9USZ2 955 Uncharacterized protein C yes no 0.866 0.652 0.258 7e-22
A7YWD2 963 Importin-13 OS=Bos taurus no no 0.856 0.639 0.222 2e-18
Q8K0C1 963 Importin-13 OS=Mus muscul no no 0.856 0.639 0.220 2e-17
Q5R974 963 Importin-13 OS=Pongo abel no no 0.851 0.635 0.219 2e-17
O94829 963 Importin-13 OS=Homo sapie no no 0.856 0.639 0.220 2e-17
Q9JM04 963 Importin-13 OS=Rattus nor no no 0.855 0.638 0.221 2e-16
Q99189 972 mRNA transport regulator yes no 0.706 0.522 0.223 4e-16
Q5ZIC8 958 Importin-13 OS=Gallus gal no no 0.799 0.600 0.234 6e-14
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1 Back     alignment and function desciption
 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 169/728 (23%), Positives = 309/728 (42%), Gaps = 82/728 (11%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKM---LMKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSG 718
             A++  G
Sbjct: 667 RFAVRCVG 674
Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3 Back     alignment and function description
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2 Back     alignment and function description
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3 Back     alignment and function description
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
359488588 1015 PREDICTED: transportin-3-like [Vitis vin 0.993 0.703 0.798 0.0
255543441 1020 Transportin-3, putative [Ricinus communi 0.993 0.7 0.799 0.0
449501328 1029 PREDICTED: transportin-3-like [Cucumis s 0.993 0.693 0.774 0.0
224131372 1008 predicted protein [Populus trichocarpa] 0.976 0.696 0.774 0.0
356561051 1011 PREDICTED: transportin-3-like [Glycine m 0.993 0.706 0.743 0.0
449455816 1031 PREDICTED: LOW QUALITY PROTEIN: transpor 0.990 0.690 0.753 0.0
18391456 1005 exportin 1-like protein domain-containin 0.979 0.700 0.655 0.0
15215746 1005 At1g12930/F13K23_14 [Arabidopsis thalian 0.979 0.700 0.654 0.0
8698739 974 Contains similarity to transportin-SR fr 0.979 0.722 0.654 0.0
297849682 1007 hypothetical protein ARALYDRAFT_471447 [ 0.979 0.699 0.656 0.0
>gi|359488588|ref|XP_002276597.2| PREDICTED: transportin-3-like [Vitis vinifera] gi|296082227|emb|CBI21232.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/721 (79%), Positives = 638/721 (88%), Gaps = 7/721 (0%)

Query: 3   MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
           M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1   MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59  DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
           DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61  DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119 ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
           I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121 IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179 GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
           GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181 GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239 AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
            HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239 GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
           KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299 KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
           SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359 SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418 MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
           MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419 MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478 FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
           FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479 FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538 ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
           ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539 ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
           IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599 ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658 TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
           TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659 TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718 G 718
           G
Sbjct: 719 G 719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543441|ref|XP_002512783.1| Transportin-3, putative [Ricinus communis] gi|223547794|gb|EEF49286.1| Transportin-3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449501328|ref|XP_004161339.1| PREDICTED: transportin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224131372|ref|XP_002321068.1| predicted protein [Populus trichocarpa] gi|222861841|gb|EEE99383.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356561051|ref|XP_003548799.1| PREDICTED: transportin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|449455816|ref|XP_004145646.1| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18391456|ref|NP_563920.1| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi|332190829|gb|AEE28950.1| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15215746|gb|AAK91418.1| At1g12930/F13K23_14 [Arabidopsis thaliana] gi|27363440|gb|AAO11639.1| At1g12930/F13K23_14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8698739|gb|AAF78497.1|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb|AF145029. ESTs gb|T46556, gb|AI993189, gb|T45501, gb|AA394463 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297849682|ref|XP_002892722.1| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi|297338564|gb|EFH68981.1| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
TAIR|locus:2010381 1005 AT1G12930 "AT1G12930" [Arabido 0.979 0.700 0.647 2e-239
MGI|MGI:1196412 923 Tnpo3 "transportin 3" [Mus mus 0.549 0.427 0.257 1.7e-30
RGD|1308938 929 Tnpo3 "transportin 3" [Rattus 0.549 0.425 0.257 1.7e-30
ZFIN|ZDB-GENE-040426-708 923 tnpo3 "transportin 3" [Danio r 0.542 0.422 0.256 2.6e-30
UNIPROTKB|Q9Y5L0 923 TNPO3 "Transportin-3" [Homo sa 0.549 0.427 0.257 3.6e-30
UNIPROTKB|A5D7C4 923 TNPO3 "TNPO3 protein" [Bos tau 0.549 0.427 0.257 7.5e-30
UNIPROTKB|F1SMQ0 921 TNPO3 "Uncharacterized protein 0.549 0.428 0.257 2.4e-29
TAIR|locus:2154159 958 MOS14 "AT5G62600" [Arabidopsis 0.720 0.540 0.255 1.5e-28
UNIPROTKB|F1N8G5 955 IPO13 "Importin-13" [Gallus ga 0.913 0.687 0.232 1.5e-27
UNIPROTKB|A7YWD2 963 IPO13 "Importin-13" [Bos tauru 0.934 0.697 0.215 5.5e-27
TAIR|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2308 (817.5 bits), Expect = 2.0e-239, P = 2.0e-239
 Identities = 464/717 (64%), Positives = 568/717 (79%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSG 705
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
MGI|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8G5 IPO13 "Importin-13" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A7YWD2 IPO13 "Importin-13" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XIV000378
hypothetical protein (1008 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 6e-17
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 6e-04
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information 
 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 719
KOG2022 982 consensus Nuclear transport receptor LGL2 (importi 100.0
KOG2081559 consensus Nuclear transport regulator [Intracellul 100.0
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 100.0
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.96
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.95
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.9
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 99.9
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.68
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 99.65
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.61
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.43
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 99.41
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 98.9
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.87
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.9
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 97.75
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.66
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.33
KOG1242569 consensus Protein containing adaptin N-terminal re 96.92
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.05
KOG1824 1233 consensus TATA-binding protein-interacting protein 95.86
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 95.77
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.87
KOG1824 1233 consensus TATA-binding protein-interacting protein 93.64
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 93.59
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.38
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 93.32
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.09
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 92.84
PRK09687280 putative lyase; Provisional 92.49
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 92.17
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 90.45
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 90.4
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 90.27
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 90.19
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.35
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 89.09
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 87.99
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 87.86
PTZ00429746 beta-adaptin; Provisional 86.27
PF08167165 RIX1: rRNA processing/ribosome biogenesis 80.7
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-73  Score=604.88  Aligned_cols=679  Identities=19%  Similarity=0.291  Sum_probs=520.4

Q ss_pred             CCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCC
Q 005008            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (719)
Q Consensus         1 ~~~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~   80 (719)
                      |+.+.+++|+++|..||++++++.++.+++||++.|+|+.||.++++||+.++.+     ++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~-----evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSS-----EVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchh-----HHHHHhHHHHHHHHHhhhcc
Confidence            6777799999999999998899999999999999999999999999999988764     88999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCC----CchhHHHHHHHh
Q 005008           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT  154 (719)
Q Consensus        81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~----~~~~~~~L~~L~  154 (719)
                      +|++++..|+.+++..+.+++.|++.|.||+|.++|.+.+++.  .||+++.+++.+++...+.    ...+..+|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999998999999999999999999986  5999999999999864321    124689999999


Q ss_pred             hhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCc
Q 005008          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (719)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~  234 (719)
                      .+|||....+     ++..+|..++.++......+..++..++....+...+.-.-..+..+++|+.+|+++.   ..+.
T Consensus       156 ~~p~e~q~~~-----l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~  227 (982)
T KOG2022|consen  156 FMPAEFQHVT-----LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG  227 (982)
T ss_pred             cCcHhhhhcc-----chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence            9999996543     7888999999999999999999988888765432100000135789999999999964   2332


Q ss_pred             chhcccchHHHHHHhcCC--CCh---HHHHHHHH------------HHHhh-----cCCChhHHHHHhhhh-hHHHchh-
Q 005008          235 GSLAAHPLLNFVFNSLQV--QSS---FDVAIEVL------------VELVG-----RHEGLPQALLCRVPF-LKELLLL-  290 (719)
Q Consensus       235 ~~~~~~~ll~~~~~~l~~--~~~---~~~a~~~l------------~eil~-----~~~~~~~~l~~~~~~-l~~~~~~-  290 (719)
                        .....++..++..+..  +..   ++.+++..            +..+.     .+..-...+++-+.+ +++.... 
T Consensus       228 --~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 --MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             --ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence              2233445555554441  111   11111111            11111     111112233333333 2332110 


Q ss_pred             hhhhcCc--hhHHhHHHHHHHHHHHhchHHHHhCC------hhHHHHHHHHHhhccCCCCCch----hhhhhHHHHHHHH
Q 005008          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEAS------PEALALADALLSCVAFPSEDWE----IADSTLQFWSTLA  358 (719)
Q Consensus       291 ~a~~~~d--~e~~~~l~~l~~~~~e~~~~~l~~~~------~~~~~ll~~ll~~~~~p~~d~~----v~~~~~~FW~~l~  358 (719)
                      +...+.|  +|....++++++..+|++.+.++++.      ..+.++++.|+.|++.|| -|+    ++..++.|||+|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG-~ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPG-QYPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCC-CccHHHHHhHHHHHHHHHHH
Confidence            2344556  67889999999999999999987642      247899999999999998 354    4568999999999


Q ss_pred             HHHhccchhhhhhhhhhHHhhH-HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchH--
Q 005008          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT--  435 (719)
Q Consensus       359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~--  435 (719)
                      |++..+..+..   +.....|+ |+|.+|++++++|+.+|.++.+..|..|++|.|++||+|++|+++++|.++|+..  
T Consensus       385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~  461 (982)
T KOG2022|consen  385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD  461 (982)
T ss_pred             HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99865533221   23345565 9999999999999999999877789999999999999999999999999999642  


Q ss_pred             HHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 005008          436 FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG  514 (719)
Q Consensus       436 ~l~~~~~~~~~~~~-~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig  514 (719)
                      ++...+.+...+.. .+.+|+..|+|+|++.++++....+++    +.++.++...++.+....+  ..+..| ++.+||
T Consensus       462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~~T-ss~~ig  534 (982)
T KOG2022|consen  462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLLST-SSDLIG  534 (982)
T ss_pred             HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHHHH-HHHHHH
Confidence            23333333333322 345699999999999999999876554    4566655554432211000  135555 579999


Q ss_pred             hhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHH
Q 005008          515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVG  593 (719)
Q Consensus       515 ~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~e  593 (719)
                      .|+.|++.||.+|.+.++.+++|+++++....|-..+++||++|+.+|. | +.+.+. .+++.+.....+..++.+++.
T Consensus       535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm~  612 (982)
T KOG2022|consen  535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLMK  612 (982)
T ss_pred             HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHHH
Confidence            9999999999999999999999999999888889999999999999985 5 555555 455556667778899999999


Q ss_pred             HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCC---
Q 005008          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN---  670 (719)
Q Consensus       594 ai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~---  670 (719)
                      +||+|++..-+|++ ++++.++++|++..++.++...-.     .+...   ++.++ .+-+++++|.++..+.+..   
T Consensus       613 sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~~~~-~l~~iS~LftSL~~~~~~~d~d  682 (982)
T KOG2022|consen  613 SIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGID-----DQENH---LRIAF-QLNTISALFTSLINKKDIIDTD  682 (982)
T ss_pred             HHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HHHHH-HHHHHHHHHhccCCCCcccccc
Confidence            99999999988887 899999999999999998665432     22111   22222 4666789999998765311   


Q ss_pred             --CCC-----CchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008          671 --PAG-----DDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG  718 (719)
Q Consensus       671 --~~~-----~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g  718 (719)
                        ..+     .-|++.++++++|++++++. +|.++.+|+|..|...+++++++|
T Consensus       683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~  736 (982)
T KOG2022|consen  683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLL  736 (982)
T ss_pred             chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhcccccc
Confidence              111     13789999999999999999 799999999999999999998875

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
2xwu_B 963 Crystal Structure Of Importin 13 - Ubc9 Complex Len 2e-17
2x19_B 963 Crystal Structure Of Importin13 - Rangtp Complex Le 4e-14
2x1g_F 971 Crystal Structure Of Importin13 - Mago-Y14 Complex 7e-09
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 151/698 (21%), Positives = 284/698 (40%), Gaps = 82/698 (11%)
Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       E+++F A 
Sbjct: 26  VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80
Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L  +    P
Sbjct: 81  ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140
Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183
                + +LF +  +        +A+LE+LTVLPEE   S+          R+    E  
Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199
Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243
           +  P++ + L Q S                +K+L+C  SWV+     E+      A  L+
Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243
Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299
              F +LQ    FD ++E +V  + + +       LL  +P              +GD +
Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303
Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353
              G+  +   +G+     +   VE     LAL + ++ C   P     +   +  TL F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363
Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413
           W TL   IL  +   A+ +   + ++  V+  L+D LL +AQ            D  +  
Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420
Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470
             +R+++ + L+ + ++L  A  +  ++   G    S+  P  W+  E  L+    ++E 
Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479
Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520
           +                     + S+ + G + ++ R       LAD     IG+ S+W+
Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520
Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580
           +        +L  +   +     S +  S L+KIC +    +  P    I+    + L K
Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579
Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636
           +         ++ A+  +L ++  +E+  NL + L+S   + + KL +      N  +++
Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638
Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNP 671
           H     + + ++     +     G     LPVP   NP
Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP 676
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963 Back     alignment and structure
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
2x19_B 963 Importin-13; nuclear transport, protein transport; 4e-80
2x1g_F 971 Cadmus; transport protein, developmental protein, 7e-58
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-49
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-48
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 5e-46
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 7e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 3e-05
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
 Score =  274 bits (701), Expect = 4e-80
 Identities = 150/738 (20%), Positives = 299/738 (40%), Gaps = 59/738 (7%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSG 718
            +  A C     ++++  
Sbjct: 700 QVVEAVCAIFEKSVKTLL 717
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
2x19_B 963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F 971 Cadmus; transport protein, developmental protein, 100.0
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.97
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.95
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.93
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.46
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.23
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.02
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.01
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 98.95
1qgr_A876 Protein (importin beta subunit); transport recepto 98.94
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.89
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.99
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.91
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.86
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.63
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.31
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.13
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.93
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.73
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.45
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.45
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.27
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.06
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.85
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.49
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.31
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.96
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.59
2x1g_F971 Cadmus; transport protein, developmental protein, 94.27
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 92.95
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 92.89
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 92.61
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 92.35
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 91.23
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 90.71
2x19_B963 Importin-13; nuclear transport, protein transport; 90.58
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 89.74
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 88.97
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 88.77
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 88.36
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 88.14
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 87.38
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 87.04
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 86.84
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 86.54
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 86.53
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 86.52
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 85.88
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 84.14
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 84.11
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 83.41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
Probab=100.00  E-value=1.6e-73  Score=675.77  Aligned_cols=653  Identities=14%  Similarity=0.156  Sum_probs=503.9

Q ss_pred             HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008            6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA   84 (719)
Q Consensus         6 ~~~v~~av~~-ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~   84 (719)
                      .++|.+||.. ++.++|++.|++|++||++||++|+||++|..+|..+..   .+.++|||||+||++||+    .+|++
T Consensus         5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~---~~~~vr~fa~~~L~~~I~----~l~~e   77 (980)
T 3ibv_A            5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTK---YKPSTRLICLQTLSEKVR----EWNNE   77 (980)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTT---SCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHH----hCChh
Confidence            5679999965 444558999999999999999999999999999987532   257999999999999999    79999


Q ss_pred             ----hHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCC-chhHHHHHHHhh
Q 005008           85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV  155 (719)
Q Consensus        85 ----~~~~Lr~~Ll~~l~~~~--~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~-~~~~~~L~~L~~  155 (719)
                          ++..||+.|++++.+..  .++++|+||||.+++.++.+.+  .||++++++++.++++  ++ .....+|++|..
T Consensus        78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~LriL~~  155 (980)
T 3ibv_A           78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKVLLS  155 (980)
T ss_dssp             TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence                99999999999998854  4678999999999999999975  6999999999999764  22 245667777777


Q ss_pred             hhhccccccccccCCCh---HHHHHHHHHHHhc-----hhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcc
Q 005008          156 LPEEVIDSQASDCNISS---AHRSQYGQELLSH-----TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAG  227 (719)
Q Consensus       156 l~EE~~~~~~~~~~l~~---~~r~~~~~~l~~~-----~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~  227 (719)
                      |+||+.+.+ +.  .+.   .|++.+++.+..+     .+.++.++.++...        +...+...+|+|+.+|+.| 
T Consensus       156 i~EEv~~~~-~~--~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~w-  223 (980)
T 3ibv_A          156 IGDEIADSL-VL--KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVSW-  223 (980)
T ss_dssp             HHHHHCCCC-SC--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTTT-
T ss_pred             hHHHHHhcc-cc--cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHhh-
Confidence            779998653 11  232   4555667777776     55555566555432        1246789999999999997 


Q ss_pred             cccccCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHH--HHHhhhhhHHHchhhhhh-cCchhHHhHH
Q 005008          228 CFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQA--LLCRVPFLKELLLLPALT-DGDEKVIGGL  304 (719)
Q Consensus       228 ~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~--l~~~~~~l~~~~~~~a~~-~~d~e~~~~l  304 (719)
                          +|.+.+.++++++.+|+.|.+++++++|++||+++++++++..+.  ++. .+.+.+.+.. ... ++|.|+.+++
T Consensus       224 ----i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~-~l~L~~~~~~-l~~~~~D~d~~~~l  297 (980)
T 3ibv_A          224 ----ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLN-ILNLNLFFSK-SQEQSTDPNFDEHV  297 (980)
T ss_dssp             ----SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHCC------CCHHHHHHH
T ss_pred             ----cCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHH-HHhHHHHHHH-HhcccccHHHHHHH
Confidence                577788889999999999999999999999999999998763221  222 2455665532 222 6888999999


Q ss_pred             HHHHHHHHHhchHHHHhCC------------hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhh
Q 005008          305 ACLMSEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNK  372 (719)
Q Consensus       305 ~~l~~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~  372 (719)
                      |++++++|+.+... .+.+            +++..+++++|.|++||  +++|+..||+||+.+.+.+...+.     .
T Consensus       298 a~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~-----~  369 (980)
T 3ibv_A          298 AKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESS-----S  369 (980)
T ss_dssp             HHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTT-----S
T ss_pred             HHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccc-----c
Confidence            99999999999998 6655            45678999999999997  679999999999998875421110     1


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHh----hcC
Q 005008          373 KHVEDMFFSVFSALLDALLLRAQVDESSFND-DGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS----WGS  447 (719)
Q Consensus       373 ~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~-~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~----~~~  447 (719)
                      ......++|++.+|++++++||+||++..++ ++|.||+++|.+||++++ ++.|++.++|++.++..+++.+    .+.
T Consensus       370 ~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~  448 (980)
T 3ibv_A          370 KELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTA  448 (980)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            2345788999999999999999999885433 234577889999999999 8999999999988777444322    111


Q ss_pred             --CCCCCChhHHHHHHHHHHHhhhhcccC------CcccchhHHHHHHHHhc-----cCchhhhhhHHHHHHHHHHHHHH
Q 005008          448 --ANVPIPWKEVETKLFALNVVSEVVLQE------GQAFDFSVIMQLVAVLS-----ASRSEELKGFMHIVYRSLADVIG  514 (719)
Q Consensus       448 --~~~~~~W~~~Ea~L~~l~~i~e~~~~~------~~~~~l~~i~~ll~~l~-----~~~~~~~~~~~~l~~~t~~~~ig  514 (719)
                        ...+.+|+++||+||+++++||+++..      ++.. +|.+++++..+.     +++|+      .+++++ |+++|
T Consensus       449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~-lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~  520 (980)
T 3ibv_A          449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKS-PTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILV  520 (980)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCC-BCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHH
T ss_pred             hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccch-hHHHHHHHHHHHhCCCCCCCCH------HHHHHH-HHHHH
Confidence              112356999999999999999998742      1122 678888777663     35554      266665 89999


Q ss_pred             hhHHHHHhCccchHHHHHHHHH--hcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCC-------
Q 005008          515 SYSKWISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHL-------  583 (719)
Q Consensus       515 ~y~~~~~~~p~~L~~vl~~l~~--~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l-------  583 (719)
                      ||++||..||++++++|++++.  |+++|  +|+.+||+||++||++|+.++. |+..+++..+...+.....       
T Consensus       521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~~~~~il~~l~~lL~~~~~~~~~~~~  599 (980)
T 3ibv_A          521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-NYTESSLAMLGDLLNISVSPVTDMDA  599 (980)
T ss_dssp             HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-SSHHHHHHHTTGGGCCCCCCCCC--C
T ss_pred             HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHhhcCcCCCCCcccc
Confidence            9999999999999999999999  99875  5999999999999999999985 5444444444333331111       


Q ss_pred             ------------ChhhHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHH
Q 005008          584 ------------PLEDEEEVVGAISLILGSV--SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSA  649 (719)
Q Consensus       584 ------------~~~~~~~l~eai~~vi~~~--p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  649 (719)
                                  ..+++..++||+|.+++..  |.++. ..+++.+++|++++++++++....++   +  ... .+...
T Consensus       600 ~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~-~~~l~~ll~pl~~~l~~~l~~~~~~~---~--~~~-~i~~~  672 (980)
T 3ibv_A          600 PVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ-ALYCDSLINALIGKANAALSSDLSAL---E--NII-SVYCS  672 (980)
T ss_dssp             SSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHHHHHHHTTSCC-----C--HHH-HHHHH
T ss_pred             cccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhcccCc---c--HHH-HHHHH
Confidence                        1347999999999999875  45554 89999999999999999998654321   1  111 22223


Q ss_pred             HHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008          650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG  718 (719)
Q Consensus       650 ~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g  718 (719)
                      +..+..++..|+...       ...+|+..+++++|+++..+++ +|+++..|.|++|++++++++++|
T Consensus       673 i~al~~lakgf~~~~-------~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg  733 (980)
T 3ibv_A          673 LMAIGNFAKGFPARG-------SEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVG  733 (980)
T ss_dssp             HHHHHHHHHTSCSCC--------CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHhccCCccc-------CCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHcc
Confidence            334455556665431       2357899999999999999999 599999999999999999999987
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 719
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 7e-07
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 7e-06
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 7e-07
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASD 167
              + L      L S+D N        L  + E+  +   SD
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 164
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.95
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.93
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.92
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.85
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.82
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.68
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.64
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.46
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.07
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.03
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.4
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.56
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.98
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 91.92
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 90.32
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 85.07
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 84.27
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-31  Score=312.61  Aligned_cols=511  Identities=14%  Similarity=0.135  Sum_probs=321.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008            6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA   85 (719)
Q Consensus         6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~   85 (719)
                      .+++.++++... +||++.|++|+++|++|++.|+.|.++..|+.....   .+..+|.+||.+||++|+++|..++++.
T Consensus        10 l~ql~~~L~~~~-s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~---~~~~~R~~A~i~Lkn~i~~~w~~~~~~~   85 (888)
T d1qbkb_          10 LQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKS---EDEPTRSLSGLILKNNVKAHFQNFPNGV   85 (888)
T ss_dssp             HHHHHHHHTTCC-HHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSC---STTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence            345555555433 567889999999999999999999999999875432   2457999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccc
Q 005008           86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS  163 (719)
Q Consensus        86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~  163 (719)
                      +..+|+.++..+.   ..++.||++++.+++.++....  .||+.++.++..+.++  ++...+..+..|..++|+....
T Consensus        86 ~~~Ik~~ll~~l~---~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~--~~~~~~~al~~L~~i~e~~~~~  160 (888)
T d1qbkb_          86 TDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSAEI  160 (888)
T ss_dssp             CHHHHHHHTTGGG---CCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGG--GSSCSSSSSTTTHHHHGGGHHH
T ss_pred             HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999988774   3556799999999999997654  6999999999888654  2334455667777777765321


Q ss_pred             cccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcch-hcccch
Q 005008          164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS-LAAHPL  242 (719)
Q Consensus       164 ~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~-~~~~~l  242 (719)
                            +..       +........++..+.+.+...        ...++..+++|+..++...     +... .....+
T Consensus       161 ------~~~-------~~~~~~~~~ll~~ll~~~~~~--------~~~vr~~al~~l~~~~~~~-----~~~~~~~~~~~  214 (888)
T d1qbkb_         161 ------LDS-------DVLDRPLNIMIPKFLQFFKHS--------SPKIRSHAVACVNQFIISR-----TQALMLHIDSF  214 (888)
T ss_dssp             ------HHT-------C---CCSTTTTHHHHTGGGSS--------SSCSSSTTTHHHHGGGGCC-----CSTTCSHHHHC
T ss_pred             ------hhH-------HHHHHHHHHHHHHHHHHhhCC--------CHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Confidence                  000       011122333444444444432        1245667788887776532     1111 111234


Q ss_pred             HHHHHHhcCC--CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHH
Q 005008          243 LNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV  320 (719)
Q Consensus       243 l~~~~~~l~~--~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~  320 (719)
                      ++.++....+  ++++..+++++..++.                                             .+...+.
T Consensus       215 l~~l~~~~~~~~~~vr~~~~~~l~~l~~---------------------------------------------~~~~~l~  249 (888)
T d1qbkb_         215 TENLFALAGDEEPEVRKNVCRALVMLLE---------------------------------------------VRMDRLL  249 (888)
T ss_dssp             SHHHHTTSSCCCSSSTTHHHHTTTTTSC---------------------------------------------SCTTTTT
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHH---------------------------------------------HhHHHHH
Confidence            4444444432  2334444444433332                                             2222221


Q ss_pred             hCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCC
Q 005008          321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS  400 (719)
Q Consensus       321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~  400 (719)
                      .   +...+++.++..+..+  |+++...+++||..+.+.-            .......+++.++++.++..+.|++.+
T Consensus       250 ~---~l~~i~~~~l~~~~~~--~e~v~~~a~ef~~~~~e~~------------~~~~~~~~~l~~l~~~l~~~~~~~~~~  312 (888)
T d1qbkb_         250 P---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDID  312 (888)
T ss_dssp             T---TTTTTTTTTTTTTTSS--CHHHHHHHHHHHCCCCSGG------------GGTTTTTTSTTTTTTTTTTSSCCSSTT
T ss_pred             H---HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            1   1123334455555553  6778888999998876532            111222334444444444444443221


Q ss_pred             CC--------------------------------------C-------CCCCCCCchHHHHHhHhhHHHHHHHHhcCchH
Q 005008          401 FN--------------------------------------D-------DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT  435 (719)
Q Consensus       401 ~~--------------------------------------~-------~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~  435 (719)
                      ..                                      .       +.++++.+.....|+..+.++..+....|.+ 
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~-  391 (888)
T d1qbkb_         313 IILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE-  391 (888)
T ss_dssp             HHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS-
T ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH-
Confidence            00                                      0       0000011111123555555555555555544 


Q ss_pred             HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 005008          436 FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS  515 (719)
Q Consensus       436 ~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~  515 (719)
                      ++..++..+... ..+.+|+.+||++++++++++++.+.-..+ ++.++..+....+++++      .+|.++ ++++|+
T Consensus       392 il~~~l~~l~~~-l~s~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d~~~------~Vr~~a-~~~l~~  462 (888)
T d1qbkb_         392 LLPHILPLLKEL-LFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKA------LVRSIT-CWTLSR  462 (888)
T ss_dssp             SHHHHHHHHHHT-TTSSSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTSSCH------HHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHh-hccchhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccCCCH------HHHHHH-HHHHHH
Confidence            444444433321 145679999999999999999886543323 56777666555666664      266664 799999


Q ss_pred             hHHHHHhCc--cchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHH
Q 005008          516 YSKWISAFQ--TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV  591 (719)
Q Consensus       516 y~~~~~~~p--~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l  591 (719)
                      |++|+....  .++.++++.++.++.+  |.|+.+|+.||..+++.++..+. |+..+++..+...+.  ......+..+
T Consensus       463 ~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~--~~~~~~~~~~  539 (888)
T d1qbkb_         463 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV-PYLAYILDTLVFAFS--KYQHKNLLIL  539 (888)
T ss_dssp             THHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG-GGHHHHHHHHHHHTT--TCCHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHh--hhhHHHHHHH
Confidence            999997653  4889999999999977  45999999999999999998875 544444444444433  3356678889


Q ss_pred             HHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhh
Q 005008          592 VGAISLILGSVSNKELKNNLLARLLSSSYEAIGKL  626 (719)
Q Consensus       592 ~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~  626 (719)
                      +++++.++..+...-..+.+++.++.+++..++..
T Consensus       540 ~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~  574 (888)
T d1qbkb_         540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML  574 (888)
T ss_dssp             HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhc
Confidence            99999999876554333567888888887766654
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure