Citrus Sinensis ID: 005010
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXD6 | 878 | E3 ubiquitin-protein liga | yes | no | 0.987 | 0.808 | 0.583 | 0.0 | |
| Q7XU27 | 884 | E3 ubiquitin-protein liga | yes | no | 0.991 | 0.806 | 0.466 | 1e-162 | |
| A2XW69 | 884 | E3 ubiquitin-protein liga | N/A | no | 0.991 | 0.806 | 0.466 | 1e-162 | |
| Q9C895 | 900 | E3 ubiquitin-protein liga | no | no | 0.986 | 0.787 | 0.314 | 2e-88 | |
| Q336R3 | 844 | E3 ubiquitin-protein liga | no | no | 0.908 | 0.773 | 0.330 | 8e-88 | |
| A2ZAC2 | 844 | E3 ubiquitin-protein liga | N/A | no | 0.908 | 0.773 | 0.330 | 8e-88 | |
| Q4R7K7 | 1001 | E3 ubiquitin-protein liga | N/A | no | 0.212 | 0.152 | 0.347 | 1e-13 | |
| Q8CJB9 | 1002 | E3 ubiquitin-protein liga | yes | no | 0.216 | 0.155 | 0.335 | 2e-13 | |
| O75150 | 1001 | E3 ubiquitin-protein liga | no | no | 0.212 | 0.152 | 0.347 | 3e-13 | |
| Q5RAU7 | 1001 | E3 ubiquitin-protein liga | yes | no | 0.212 | 0.152 | 0.347 | 3e-13 |
| >sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/715 (58%), Positives = 537/715 (75%), Gaps = 5/715 (0%)
Query: 1 MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
M STGEPDRKRRHFSSISP+ AA KK PFF S E K+DTAVLQFQN KL QKLE Q+
Sbjct: 1 MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLKLSQKLEAQQ 60
Query: 59 VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L +ESCS+R +SS+G R ++
Sbjct: 61 VECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNKE 119
Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
+ +P +D F++RL+ETGATESSS++ C NQMEE+ + + N++AA ++L
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDLR 178
Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
LK LY VL+ +L Q A S L+SE+K+ R L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238
Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
AK + L R++GELE V EL++CN L+ALRAERD T GAFFPVL+LGNK DR RD
Sbjct: 239 AKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298
Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
+QRDL+DME+V KEL AS +L +LK LH+ R K+L ++ NLQN KSV+C+SSS+A L
Sbjct: 299 KQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQACL 358
Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
S+K+QLEKSK VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A
Sbjct: 359 SLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMAS 418
Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
L EIQKQ+DEK RI+ RL SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE A
Sbjct: 419 LDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKETA 478
Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
IH LRADV SL+ VL RK KE E L SAD +++ L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFLD 538
Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
MY+RESTD+RD+ A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAAE
Sbjct: 539 MYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAE 598
Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
AEIAD+RQK++ KRD+ SD LKSK+EE YLSEI+TIG +Y+D+ QNQQLL Q+T
Sbjct: 599 AEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVT 658
Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQV 712
ERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A +F K++RIE+Q+
Sbjct: 659 ERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQL 713
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E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3 | Back alignment and function description |
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| >sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1 | Back alignment and function description |
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| >sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2 | Back alignment and function description |
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| >sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1 | Back alignment and function description |
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| >sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| 297734578 | 878 | unnamed protein product [Vitis vinifera] | 0.988 | 0.809 | 0.697 | 0.0 | |
| 225453456 | 901 | PREDICTED: E3 ubiquitin-protein ligase B | 0.988 | 0.789 | 0.675 | 0.0 | |
| 224067588 | 877 | histone ubiquitination proteins group [P | 0.977 | 0.801 | 0.677 | 0.0 | |
| 224136330 | 884 | histone ubiquitination proteins group [P | 0.938 | 0.763 | 0.642 | 0.0 | |
| 356498180 | 874 | PREDICTED: E3 ubiquitin-protein ligase B | 0.984 | 0.810 | 0.630 | 0.0 | |
| 356539611 | 873 | PREDICTED: E3 ubiquitin-protein ligase B | 0.983 | 0.809 | 0.627 | 0.0 | |
| 449431978 | 878 | PREDICTED: E3 ubiquitin-protein ligase B | 0.990 | 0.810 | 0.618 | 0.0 | |
| 357504631 | 947 | E3 ubiquitin-protein ligase BRE1-like pr | 0.988 | 0.750 | 0.553 | 0.0 | |
| 297828217 | 878 | histone mono-ubiquitination 1 [Arabidops | 0.987 | 0.808 | 0.586 | 0.0 | |
| 30689877 | 878 | E3 ubiquitin-protein ligase BRE1-like 1 | 0.987 | 0.808 | 0.583 | 0.0 |
| >gi|297734578|emb|CBI16629.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/714 (69%), Positives = 597/714 (83%), Gaps = 3/714 (0%)
Query: 1 MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
MGSTGEPDRKRRHFSS+SPTAATAKK PF P SE+KK+DTAVLQ+QNQKL QKLE QKVE
Sbjct: 1 MGSTGEPDRKRRHFSSLSPTAATAKKMPFLPVSEDKKLDTAVLQYQNQKLKQKLEAQKVE 60
Query: 61 YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARES-SNGQESRCLSIIE 119
SALENKF+QLKE QQ Y++TL +VNK+W EL+ +LE+CS+ ++S S G+ + S E
Sbjct: 61 CSALENKFSQLKETQQSYNTTLTLVNKTWRELVDNLETCSVHLKDSASAGRHVKLPSTTE 120
Query: 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWH 179
D DAFLSRL+ETGATES SA++ ++MEEDR T +TKN +SNI++ +++LW
Sbjct: 121 DGNS-CLQDAFLSRLIETGATESCSANDFSDRMEEDRPTSCGKTKNSLSNIVSTINDLWC 179
Query: 180 LKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238
LK GLYAAVL+ L +DG +K SS+L +EV N+RLA DLHLKHKS+TR++QS +DIDA
Sbjct: 180 LKDGLYAAVLEALPEDGLCNKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDA 239
Query: 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDE 298
K+KA+L RL+GELES V ELEE NCKL L+AERD KGAFFP+L+LG+K+VAGD+ RD+
Sbjct: 240 KNKAELKRLRGELESTVAELEESNCKLVTLKAERDAAKGAFFPILSLGSKNVAGDKARDK 299
Query: 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS 358
Q+DL DME+ KEL+DQ+S +LLELK L++ RI +L+QL NLQNTLK+VKC+SSS A++
Sbjct: 300 QKDLHDMEATLKELLDQSSSRLLELKALYEERIGILKQLSNLQNTLKNVKCISSSSAYVL 359
Query: 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADL 418
V +QLEKSK+EV YQALFEKLQVEKDNL WRE E+NMK D VDVFRRSS VTDS++++L
Sbjct: 360 VTDQLEKSKAEVVHYQALFEKLQVEKDNLVWREKEVNMKNDFVDVFRRSSVVTDSRLSEL 419
Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
IEIQ QI+E+N IE++LEEASREPGRKEIIAEF+AL+SSFP++M MQ QL KYKEAA
Sbjct: 420 RIEIQNQINERNLIEIKLEEASREPGRKEIIAEFKALLSSFPDNMGTMQNQLRKYKEAAS 479
Query: 479 DIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDM 538
D+H LRADV SL++VLERK KE ETL SADQVA+I KLQA++QDL +S+++LKLIL+M
Sbjct: 480 DVHSLRADVQSLSSVLERKEKELETLSTRSADQVADIRKLQALIQDLEESDIQLKLILEM 539
Query: 539 YRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEA 598
YR ES DSRDVL ARD EYKAWAHV SLKSSL+E SLELRVKTAIEAEA+SQQRLAAAEA
Sbjct: 540 YRCESVDSRDVLEARDKEYKAWAHVQSLKSSLNEHSLELRVKTAIEAEALSQQRLAAAEA 599
Query: 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658
I D+RQKLEA KRDM LSD LKSK+EE EAYLSEIETIGQ+YDDMQTQNQ LLQQITE
Sbjct: 600 VIVDLRQKLEASKRDMFRLSDVLKSKHEENEAYLSEIETIGQAYDDMQTQNQHLLQQITE 659
Query: 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQV 712
RDDYNIKLVLEGVR+RQLQD+LLM+K ME Q+A SL FFDMKA RIE+Q+
Sbjct: 660 RDDYNIKLVLEGVRSRQLQDSLLMEKQTMERGFQRATTSLGFFDMKAGRIEDQL 713
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453456|ref|XP_002274055.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224067588|ref|XP_002302510.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222844236|gb|EEE81783.1| histone ubiquitination proteins group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224136330|ref|XP_002326834.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222835149|gb|EEE73584.1| histone ubiquitination proteins group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356498180|ref|XP_003517931.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356539611|ref|XP_003538290.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449431978|ref|XP_004133777.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus] gi|449478010|ref|XP_004155194.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357504631|ref|XP_003622604.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula] gi|355497619|gb|AES78822.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297828217|ref|XP_002881991.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata] gi|297327830|gb|EFH58250.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30689877|ref|NP_182022.2| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] gi|75303266|sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gi|19698951|gb|AAL91211.1| unknown protein [Arabidopsis thaliana] gi|34098841|gb|AAQ56803.1| At2g44950 [Arabidopsis thaliana] gi|330255395|gb|AEC10489.1| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| TAIR|locus:2054997 | 878 | HUB1 "histone mono-ubiquitinat | 0.986 | 0.807 | 0.575 | 2e-200 | |
| TAIR|locus:2035726 | 900 | HUB2 "histone mono-ubiquitinat | 0.944 | 0.754 | 0.316 | 1.1e-89 | |
| MGI|MGI:2142048 | 1001 | Rnf40 "ring finger protein 40" | 0.229 | 0.164 | 0.3 | 1.2e-23 | |
| RGD|628638 | 1002 | Rnf40 "ring finger protein 40, | 0.228 | 0.163 | 0.303 | 8.7e-22 | |
| UNIPROTKB|F1RG77 | 1000 | RNF40 "Uncharacterized protein | 0.296 | 0.213 | 0.266 | 4.2e-21 | |
| UNIPROTKB|E2R1L5 | 1001 | RNF40 "Uncharacterized protein | 0.261 | 0.187 | 0.284 | 5.3e-21 | |
| UNIPROTKB|H3BP71 | 961 | RNF40 "E3 ubiquitin-protein li | 0.260 | 0.194 | 0.280 | 7.7e-21 | |
| UNIPROTKB|Q4R7K7 | 1001 | RNF40 "E3 ubiquitin-protein li | 0.260 | 0.186 | 0.280 | 8.9e-21 | |
| UNIPROTKB|O75150 | 1001 | RNF40 "E3 ubiquitin-protein li | 0.260 | 0.186 | 0.280 | 9e-21 | |
| UNIPROTKB|Q5RAU7 | 1001 | RNF40 "E3 ubiquitin-protein li | 0.260 | 0.186 | 0.280 | 1.4e-20 |
| TAIR|locus:2054997 HUB1 "histone mono-ubiquitination 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1940 (688.0 bits), Expect = 2.0e-200, P = 2.0e-200
Identities = 412/716 (57%), Positives = 533/716 (74%)
Query: 1 MGSTGEPDRKRRHFSSISPT--AATAKKNPFF-PSSEEKKIDTAVLQFQNQKLVQKLETQ 57
M STGEPDRKRRHFSSISP+ AA KK PFF PSSE+K +DTAVLQFQN KL QKLE Q
Sbjct: 1 MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDK-LDTAVLQFQNLKLSQKLEAQ 59
Query: 58 KVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSI 117
+VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L +ESCS+R +SS+G R ++
Sbjct: 60 QVECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNK 118
Query: 118 IEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNL 177
+ +P +D F++RL+ETGATESSS++ C NQMEE+ + + N++AA ++L
Sbjct: 119 EDGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDL 177
Query: 178 WHLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDI 236
LK LY VL+ +L Q A S L+SE+K+ R L D+ +K KSL+RELQS +D
Sbjct: 178 RCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDA 237
Query: 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVR 296
DAK + L R++GELE V EL++CN L+ALRAERD T GAFFPVL+LGNK DR R
Sbjct: 238 DAKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRER 297
Query: 297 DEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAF 356
D+QRDL+DME+V KEL AS +L +LK LH+ R K+L ++ NLQN KSV+C+SSS+A
Sbjct: 298 DKQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQAC 357
Query: 357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIA 416
LS+K+QLEKSK VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A
Sbjct: 358 LSLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMA 417
Query: 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476
L EIQKQ+DEK RI+ RL SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE
Sbjct: 418 SLDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKET 477
Query: 477 ALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536
A IH LRADV SL+ VL RK KE E L SAD +++ L A V DL +S+ ELKL L
Sbjct: 478 AGGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFL 537
Query: 537 DMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAA 596
DMY+RESTD+RD+ A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAA
Sbjct: 538 DMYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAA 597
Query: 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXI 656
EAEIAD+RQK++ KRD+ SD LKSK+EE YLSEI+TIG +Y+D+ +
Sbjct: 598 EAEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQV 657
Query: 657 TERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQV 712
TERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A +F K++RIE+Q+
Sbjct: 658 TERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQL 713
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| TAIR|locus:2035726 HUB2 "histone mono-ubiquitination 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|628638 Rnf40 "ring finger protein 40, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RG77 RNF40 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|H3BP71 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4R7K7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RXD6 | BRE1A_ARATH | 6, ., 3, ., 2, ., - | 0.5832 | 0.9874 | 0.8086 | yes | no |
| Q7XU27 | BRE1A_ORYSJ | 6, ., 3, ., 2, ., - | 0.4668 | 0.9916 | 0.8065 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019139001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (878 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 719 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.003 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 49/264 (18%), Positives = 112/264 (42%), Gaps = 14/264 (5%)
Query: 405 RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDM 463
+RSS ++ +L E+ + + ++E L+ E ++++ E R + +
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 464 SAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQ 523
++R+L+ +E L++ + L LE +E E L + E+ L+ +
Sbjct: 719 EELKRELAALEEELEQ---LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 524 DLTDSNLELKLI-------LDMYRRESTDSRDVLAARDLEYKAW-AHVHSLKSSLDEQSL 575
L + EL+ L+ E ++ L A + E ++ L+ + + L
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI--EEL 833
Query: 576 ELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635
E ++ E ++ L E E+ +++++LE + + L D LK EE E E+
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 636 ETIGQSYDDMQTQNQQLLQQITER 659
+ +++ + ++L +++ E
Sbjct: 894 RELESELAELKEEIEKLRERLEEL 917
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 100.0 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 99.31 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.17 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.95 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 98.93 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.92 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.89 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.88 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.88 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 98.78 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.75 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.66 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.62 | |
| PF08647 | 96 | BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395 | 98.53 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.51 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.5 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.43 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.31 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.24 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.17 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.1 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.09 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 98.09 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.03 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.98 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.92 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.85 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.84 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.83 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.81 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.79 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 97.78 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.71 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.67 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.65 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.63 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.6 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.48 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.47 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.39 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.36 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.29 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.16 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.16 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.08 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.03 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.97 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.95 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 96.95 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.79 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 96.78 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.76 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.72 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 96.59 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 96.56 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 96.52 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 96.45 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 96.44 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.33 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 96.32 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.27 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 96.27 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 96.18 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.09 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 96.02 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.82 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 95.77 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.75 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 95.71 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 95.69 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 95.61 | |
| PF13514 | 1111 | AAA_27: AAA domain | 95.5 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.08 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 95.02 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.95 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 94.81 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 94.77 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 94.69 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 94.59 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 94.49 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.45 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 94.08 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.06 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 93.93 | |
| PF15294 | 278 | Leu_zip: Leucine zipper | 93.9 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 93.82 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 93.73 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 93.51 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.42 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 93.32 | |
| PRK09039 | 343 | hypothetical protein; Validated | 93.27 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 93.22 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 92.62 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 92.55 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 92.46 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 92.26 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 92.11 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 92.1 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 91.99 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 91.99 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 91.95 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 91.81 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 91.59 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 91.22 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 91.01 | |
| KOG4807 | 593 | consensus F-actin binding protein, regulates actin | 90.95 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 90.93 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 90.58 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 90.37 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 89.96 | |
| PF13863 | 126 | DUF4200: Domain of unknown function (DUF4200) | 89.94 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 89.68 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 89.3 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 88.73 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 88.61 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 88.48 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 88.39 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 88.33 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 87.95 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 87.85 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 87.18 | |
| PF15294 | 278 | Leu_zip: Leucine zipper | 87.11 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 87.05 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 86.75 | |
| KOG2991 | 330 | consensus Splicing regulator [RNA processing and m | 86.51 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 86.43 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 86.33 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 85.96 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 85.89 | |
| PF06548 | 488 | Kinesin-related: Kinesin-related; InterPro: IPR010 | 85.77 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 84.64 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 84.63 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 84.59 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 84.26 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 84.22 | |
| PF09738 | 302 | DUF2051: Double stranded RNA binding protein (DUF2 | 83.84 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 83.61 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 83.57 | |
| PF14197 | 69 | Cep57_CLD_2: Centrosome localisation domain of PPC | 83.56 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 83.46 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 83.42 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 83.23 | |
| PF09486 | 158 | HrpB7: Bacterial type III secretion protein (HrpB7 | 83.1 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 82.36 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 82.29 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 82.11 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 81.79 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 81.7 | |
| PF08647 | 96 | BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395 | 81.52 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 81.37 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 80.92 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 80.88 | |
| COG2433 | 652 | Uncharacterized conserved protein [Function unknow | 80.69 |
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=456.59 Aligned_cols=525 Identities=26% Similarity=0.318 Sum_probs=461.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 005010 152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQ 231 (719)
Q Consensus 152 ~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~ 231 (719)
++..+..|+.++++.++.++..+|.+....+.++..+.+.. . .....++.|..++.+||..++.+|.+|+.++.++.
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~-e--~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~ 79 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRVE-E--ALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS 79 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999988887776520 0 01227888999999999999999999999999999
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCccccccCCCCCCCCCCccchhhhhhhHHHHHH
Q 005010 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVT-KGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310 (719)
Q Consensus 232 ~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~ele 310 (719)
.+.|+++...+++.++..++|+++|++++.+++...+..-...+ .+.++||. |||+ ++|.++.+...+..+.+.++
T Consensus 80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~~-~~~~~t~~~t~~~~l~~~ie 156 (698)
T KOG0978|consen 80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNGS-LSGTITVNSTELEELRDEIE 156 (698)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--cccc-cCcccccchhhhhhhccchh
Confidence 99999999999999999999999999999999888876432222 22333222 2322 33445556666999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (719)
Q Consensus 311 E~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~--~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~ 388 (719)
+++.+++.|+.+|+.++..+..+..++..+++.++.. +++..|..|.+++ ++..+....
T Consensus 157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~~~-------------- 217 (698)
T KOG0978|consen 157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQRKT-------------- 217 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccccc--------------
Confidence 9999999999999999999999999999999999644 7777778888877 332322221
Q ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhcHHHHHHHH
Q 005010 389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQ 467 (719)
Q Consensus 389 ~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~-k~~~~~E~r~Lissl~~~i~~Lk 467 (719)
+ ++.+++. ...++.+++.++.|+.+|++++.+++....+.+ .++|++||++|++++++++++|+
T Consensus 218 -----~----~~~e~~~------~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~ 282 (698)
T KOG0978|consen 218 -----M----ESDEAIN------SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLK 282 (698)
T ss_pred -----c----hhhhhhc------cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 4455542 344899999999999999999999999999988 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhcCCCc
Q 005010 468 RQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRRESTDS 546 (719)
Q Consensus 468 ~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk-~~l~ka~~~~~elkl~ldmy~~~~~d~ 546 (719)
+..++|+++..++.+++....++...+..++.+.+.+.+.+....+.+..+. .-+.+.....++++.+++++...+.+.
T Consensus 283 ~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~ 362 (698)
T KOG0978|consen 283 EYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKE 362 (698)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 9999999999999999999999888887777778888888888888888888 777888888999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHh---hhhhhhHHh
Q 005010 547 RDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSDAL 621 (719)
Q Consensus 547 rd~~~~~~~E~~-~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr-~~l~~~~~---~~~~l~~~l 621 (719)
||+........+ ++..++.++..+.++..+.+||...|.+..+|+.+...+.++.+++ ..++...| ++.+++..|
T Consensus 363 ~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 363 RDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 999999999888 9999999999999999999999999999999999999999999999 77888888 888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhH
Q 005010 622 KSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFF 701 (719)
Q Consensus 622 ~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~ 701 (719)
..+.+...+|++||++||+||||||+||++|++|++++||+|||||+|+++++|.|+.|+.++.+|+.+++++.++++++
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhc
Q 005010 702 DMKAARIENQVCLFG 716 (719)
Q Consensus 702 ~~~~~~~e~~~~~~~ 716 (719)
..+|.+|||++++|-
T Consensus 523 ~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999873
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF15294 Leu_zip: Leucine zipper | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13863 DUF4200: Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF15294 Leu_zip: Leucine zipper | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG2991 consensus Splicing regulator [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [] | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 8e-21
Identities = 102/696 (14%), Positives = 207/696 (29%), Gaps = 174/696 (25%)
Query: 39 DTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEEL--ITDL 96
+T Q+Q + ++ E+ F + + D +++K EE+ I
Sbjct: 10 ETGEHQYQYKDILS----------VFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMS 57
Query: 97 ESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQME--- 153
+ R + F+ E N M
Sbjct: 58 KDAVSGTL--------RLFWTLLS-KQEEMVQKFV---------EEVLRINYKFLMSPIK 99
Query: 154 -EDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNL 212
E R+ + I D L++ D K + + L
Sbjct: 100 TEQRQPSMMTRMYI-----EQRDRLYN--------------DNQVFAKYNVSRLQPYLKL 140
Query: 213 RLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC-K--LAA-- 267
R AL+ EL+ +++ ++ + G K +A
Sbjct: 141 RQALL-----------ELRPAKNV------LIDGVLG-------------SGKTWVALDV 170
Query: 268 LRAERDVTKGAFFPV--LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKG 325
+ + V F + LNL N + + Q+ L ++ D +S+ L +
Sbjct: 171 CLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 326 LHDGRIKVLQQLYNLQNTL------KSVKCLSSSKAF------------LSVKNQLEKSK 367
+ ++ L + +N L ++ K AF V + L +
Sbjct: 230 IQA-ELRRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 368 SEVFKYQALFEKLQVEKDNLAWRETE------LNMKI-DLVDVFRRSSAVTDS--KIADL 418
+ L L E + L+ + DL +T + +++ +
Sbjct: 286 TTHI-------SLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTNPRRLSII 333
Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
I+ D + + + + I + L P + M +LS +
Sbjct: 334 AESIR---DGLATWD-NWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPP--- 383
Query: 479 DIHILRADVLSL------TNVLERKVKECE--TLLA-SSADQVAEIHKLQAMVQDLTDSN 529
HI +LSL + + V + +L+ + I + ++ ++
Sbjct: 384 SAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 530 LEL-KLILDMYR-RESTDSRDVLAARDLEYKAWAHV--HSLKSSLDEQSLELRVKTA--- 582
L + I+D Y ++ DS D++ +Y H+ H E+ R+
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 583 -IEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQS 641
+E + A I + Q+L+ +K + + I +L +IE
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ 677
LL+ +D I E +Q+Q
Sbjct: 562 SKYT-----DLLRIALMAEDEAI--FEEA--HKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.86 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.74 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.71 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.84 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.42 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.77 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 93.86 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.17 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.06 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 92.6 | |
| 3i00_A | 120 | HIP-I, huntingtin-interacting protein 1; transcrip | 92.21 | |
| 3q8t_A | 96 | Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 | 89.44 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 87.3 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 86.87 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 84.93 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 84.22 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 83.31 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 80.44 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.03 Score=56.03 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 212 Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
+...++.+......+..++..+...+......+..+...+..+...+..+..
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333343333333333333333
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A | Back alignment and structure |
|---|
| >3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00