Citrus Sinensis ID: 005038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------
Protein Sequence
MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHcccccccccEEEEEccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccHHHHccccccccccEEEEEEccccccccccccEEEEEEEEcccEEEEccccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHHHcccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccHHHHHHHHHHHHccccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHccccccEEEccccccccccccHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msscevngvvrsqgLCSLVHLQELYIasndlrgslpwcmanmtslrildvssnqltgsisssplvhLTSIEELmlsnnyfqipisleplfnysrlkifnaeNNEIKAEITeshsliapkfqlntlslssnygdgfifpkflyhqhdleyvdlshikmngefpnwllenntkLETLFLVndslagpfrlpihshkrlrqldvsnnnirghipvkigdvlpsLYVFnnsmnaldgsipssfgnmkFLQILDlsnnhltgeipehlavgCVNLQFLALSNnnlqghlfsrnfnltnLQWLQLegnrfvgeipqslskcssleglylnnnsllgkiprwlgnltrlqyiimpnnhlegpipvefcqldslqildisdnnisgslpscfhplsikqvhLSKNmlhgqlkrgtffncsslvtldlsynrlngsipdwvDGLSQLSHLILGHNNLEGEVSVQLCELNQlqlldlsnnnlhgpippcfdnttlhesysnssspdeqFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSgldlscnklighippqignltRIQTLNlshnnltgsipstfsnlkhvesldlsnnklngkiphqlVELKTLEVFSVAYNNlsgeipewKAQFATfnessyegntflcglplpicrspatmpeasigneqddnlidmdSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Flexible Loop (DISEMBL)
msscevngvVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Low Complexity Region (SEG)
MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVqlcelnqlqlldlsnnnlHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered region (IsUnstruct)
*****VNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT**************FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP*************DNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI*
Disordered Region (DISOPRED)
MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY********QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG****************************DSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered Region (DISEMBL)
********VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH*********DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered Region (DISPRO)
**SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	717	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.938	0.537	0.311	4e-72
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.945	0.542	0.305	3e-64
Q9FL28	1173	LRR receptor-like serine/	no	no	0.828	0.506	0.322	1e-63
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.942	0.579	0.287	3e-63
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.715	0.448	0.326	5e-62
Q9LHP4	1141	Receptor-like protein kin	no	no	0.836	0.525	0.332	3e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.974	0.600	0.308	4e-59
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.817	0.491	0.307	4e-58
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.849	0.509	0.3	2e-57
P93194	1109	Receptor-like protein kin	N/A	no	0.718	0.464	0.316	6e-57

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  273 bits (698), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 231/742 (31%), Positives = 368/742 (49%), Gaps = 69/742 (9%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           ++SC + G++ S+    LV LQ L +  N+L G +P  + N TSL +   + N+L GS+ 
Sbjct: 175 LASCRLTGLIPSR-FGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLP 233

Query: 61  SSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
           +  L  L +++ L L +N F  +IP  L  L +   ++  N   N+++  I +  + +A 
Sbjct: 234 AE-LNRLKNLQTLNLGDNSFSGEIPSQLGDLVS---IQYLNLIGNQLQGLIPKRLTELA- 288

Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
              L TL LSSN   G I  +F +  + LE++ L+  +++G  P  +  NNT L+ LFL 
Sbjct: 289 --NLQTLDLSSNNLTGVIHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLS 345

Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIP 236
              L+G     I + + L+ LD+SNN + G IP  +  +  L +LY+ NNS   L+G++ 
Sbjct: 346 ETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNS---LEGTLS 402

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 296
           SS  N+  LQ   L +N+L G++P+ +      L+ + L  N   G +     N T LQ 
Sbjct: 403 SSISNLTNLQEFTLYHNNLEGKVPKEIGF-LGKLEIMYLYENRFSGEMPVEIGNCTRLQE 461

Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
           +   GNR  GEIP S+ +   L  L+L  N L+G IP  LGN  ++  I + +N L G I
Sbjct: 462 IDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSI 521

Query: 357 PVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQL------------ 403
           P  F  L +L++  I +N++ G+LP     L  + +++ S N  +G +            
Sbjct: 522 PSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSF 581

Query: 404 ---KRG-------TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453
              + G            ++L  L L  N+  G IP     +S+LS L +  N+L G + 
Sbjct: 582 DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIP 641

Query: 454 VQLCELNQLQLLDLSNNNLHGPIP------PCFDNTTLHESYSNSSSPDEQFEI------ 501
           V+L    +L  +DL+NN L G IP      P      L  +    S P E F +      
Sbjct: 642 VELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTL 701

Query: 502 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV----------LSLLSGLDLSCNKLIG 551
           F       G + +   EI      N   + + ++          LS L  L LS N L G
Sbjct: 702 FLDGNSLNGSIPQ---EIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTG 758

Query: 552 HIPPQIGNLTRIQT-LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 610
            IP +IG L  +Q+ L+LS+NN TG IPST S L  +ESLDLS+N+L G++P Q+ ++K+
Sbjct: 759 EIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKS 818

Query: 611 LEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQD 670
           L   +++YNNL G++   K QF+ +   ++ GN  LCG PL  C    +  + S+  +  
Sbjct: 819 LGYLNLSYNNLEGKL---KKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTV 875

Query: 671 DNLIDMDSFFITFTTSYVIVIF 692
             +  + S         VI++F
Sbjct: 876 VIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  247 bits (630), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 249/815 (30%), Positives = 372/815 (45%), Gaps = 137/815 (16%)

Query: 3   SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSS 62
           S ++ G + SQ L SLV+++ L I  N+L G +P  + N+ +L++L ++S +LTG I S 
Sbjct: 128 SNQLTGEIPSQ-LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ 186

Query: 63  PLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE----NNEIKAEIT-------- 110
            L  L  ++ L+L +NY + PI  E L N S L +F A     N  I AE+         
Sbjct: 187 -LGRLVRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEIL 244

Query: 111 ---------ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161
                    E  S +    QL  LSL +N   G I PK L    +L+ +DLS   + GE 
Sbjct: 245 NLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLI-PKSLADLGNLQTLDLSANNLTGEI 303

Query: 162 PN--WLLENNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVL 218
           P   W   N ++L  L L N+ L+G     I S+   L QL +S   + G IPV++    
Sbjct: 304 PEEFW---NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC- 359

Query: 219 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 278
            SL   + S N+L GSIP +   +  L  L L NN L G +   ++    NLQ+L L +N
Sbjct: 360 QSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS-NLTNLQWLVLYHN 418

Query: 279 NLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN 338
           NL+G L      L  L+ L L  NRF GEIPQ +  C+SL+ + +  N   G+IP  +G 
Sbjct: 419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR 478

Query: 339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 397
           L  L  + +  N L G +P        L ILD++DN +SGS+PS F  L  ++Q+ L  N
Sbjct: 479 LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNN 538

Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI-----------------------PDWVDG 434
            L G L   +  +  +L  ++LS+NRLNG+I                       P  +  
Sbjct: 539 SLQGNLPD-SLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGN 597

Query: 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP----CFDNTTLHESYS 490
              L  L LG N L G++   L ++ +L LLD+S+N L G IP     C   T +  + +
Sbjct: 598 SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNN 657

Query: 491 NSSSPDEQFEIFFSIEGH-----QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
             S P   +    S  G        F+E    E+F  T          K+L L     L 
Sbjct: 658 FLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCT----------KLLVL----SLD 703

Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
            N L G IP +IGNL  +  LNL  N  +GS+P     L  +  L LS N L G+IP ++
Sbjct: 704 GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEI 763

Query: 606 VELKTLE-VFSVAYNNLSGEIP-------------------------------------- 626
            +L+ L+    ++YNN +G+IP                                      
Sbjct: 764 GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

Query: 627 -------EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSF 679
                  + K QF+ +   S+ GNT LCG PL  C    +       N+Q    +   S 
Sbjct: 824 SFNNLGGKLKKQFSRWPADSFLGNTGLCGSPLSRCNRVRS------NNKQQG--LSARSV 875

Query: 680 FITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEM 714
            I    S +  I  +++V+ +  ++++R  +F ++
Sbjct: 876 VIISAISALTAIGLMILVIAL--FFKQRHDFFKKV 908

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  245 bits (625), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 215/667 (32%), Positives = 317/667 (47%), Gaps = 73/667 (10%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L  LVHLQ    A N L GS+P  +  + +L  LD+S NQLTG I      +L +++ L+
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 75  LSNNYFQ--IPISLEPLFNYSRLKIFNAE-NNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
           L+ N  +  IP  +    +  +L++++ +   +I AE+     L A +   N L+ S   
Sbjct: 247 LTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS--- 303

Query: 132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVNDSLAGPFRLP 189
                 P  L+    L ++ LS   + G     +  LE+   LE L L +++  G F   
Sbjct: 304 -----IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQS 355

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           I + + L  L V  NNI G +P  +G +L +L   +   N L G IPSS  N   L++LD
Sbjct: 356 ITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309
           LS+N +TGEIP                          R F   NL ++ +  N F GEIP
Sbjct: 415 LSHNQMTGEIP--------------------------RGFGRMNLTFISIGRNHFTGEIP 448

Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 369
             +  CS+LE L + +N+L G +   +G L +L+ + +  N L GPIP E   L  L IL
Sbjct: 449 DDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNIL 508

Query: 370 DISDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
            +  N  +G +P     L++ Q + +  N L G +     F+   L  LDLS N+ +G I
Sbjct: 509 YLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQI 567

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP----PCFDNTT 484
           P     L  L++L L  N   G +   L  L+ L   D+S+N L G IP        N  
Sbjct: 568 PALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG--- 541
           L+ ++SN+        +  +I    G LE     + E    N   ++ G +   L     
Sbjct: 628 LYLNFSNNL-------LTGTIPKELGKLEM----VQEIDLSN--NLFSGSIPRSLQACKN 674

Query: 542 ---LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
              LD S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS+N L
Sbjct: 675 VFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP 657
            G+IP  L  L TL+   +A NNL G +PE    F   N S   GNT LCG   P+   P
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KP 791

Query: 658 ATMPEAS 664
            T+ + S
Sbjct: 792 CTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  243 bits (621), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 217/755 (28%), Positives = 349/755 (46%), Gaps = 79/755 (10%)

Query: 32  RGSLPW---CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ------- 81
           RGS  W     ++   +  LD+ ++ LTG+++   L  L +++ L L  NYF        
Sbjct: 63  RGSCSWRGVSCSDDGRIVGLDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFSSGGDSSG 122

Query: 82  -------IPISLEPLFNYSRLK-IFNAENNEIKAEITESHSLIAPKFQ------LNTLSL 127
                  + +S   + +YS +  +F+  +N +   I+ +  +    F       L T+ L
Sbjct: 123 SDCYLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDL 182

Query: 128 SSNYGDGFIFPKFLYH-QHDLEYVDLSHIKMNGEFPNW---------------------- 164
           S N     I   F+      L+Y+DL+H  ++G+F +                       
Sbjct: 183 SYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 165 ---LLENNTKLETLFLVNDSLAGPFRLP----IHSHKRLRQLDVSNNNIRGHIPVKIGDV 217
               L N   LETL +  ++LAG  ++P      S + L+QL +++N + G IP ++  +
Sbjct: 243 FPITLPNCKFLETLNISRNNLAG--KIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLL 300

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
             +L + + S N   G +PS F    +LQ L+L NN+L+G+    +      + +L ++ 
Sbjct: 301 CKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAY 360

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ---SLSKCSSLEGLYLNNNSLLGKIPR 334
           NN+ G +     N +NL+ L L  N F G +P    SL     LE + + NN L G +P 
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPM 420

Query: 335 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQV 392
            LG    L+ I +  N L GPIP E   L +L  L +  NN++G++P   C    +++ +
Sbjct: 421 ELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETL 480

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
            L+ N+L G +   +   C++++ + LS NRL G IP  +  LS+L+ L LG+N+L G V
Sbjct: 481 ILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQ 509
             QL     L  LDL++NNL G +P    +     +  S S       + E      G  
Sbjct: 540 PRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 510 GFLEKQNHEIFEFTTKNIAY------IYQGKVLSLLSG------LDLSCNKLIGHIPPQI 557
           G +E +           + +      IY G  +   S        D+S N + G IPP  
Sbjct: 600 GLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGY 659

Query: 558 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617
           GN+  +Q LNL HN +TG+IP +F  LK +  LDLS+N L G +P  L  L  L    V+
Sbjct: 660 GNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVS 719

Query: 618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMD 677
            NNL+G IP +  Q  TF  S Y  N+ LCG+PL  C S    P  S  + +   +    
Sbjct: 720 NNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQTVATAV 778

Query: 678 SFFITFT-TSYVIVIFGIVIVLYVNSYWRRRWFYF 711
              I F+   +V+++  +  V  V    ++R  Y 
Sbjct: 779 IAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  239 bits (611), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 285/585 (48%), Gaps = 72/585 (12%)

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP---FRLPIHSHKRL 196
           F     +L  + LS+    G+ PN L  ++ KL+TL L  +++ GP     +P+ S   +
Sbjct: 147 FFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVSM 206

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
             LD S N+I G+I   + +   +L   N S N  DG IP SFG +K LQ LDLS+N LT
Sbjct: 207 TYLDFSGNSISGYISDSLINCT-NLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLT 265

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQGHL--------FSRNFNLTN--------------- 293
           G IP  +   C +LQ L LS NN  G +        + ++ +L+N               
Sbjct: 266 GWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSF 325

Query: 294 --LQWLQLEGNRFVGEIPQSLSKC-------------------------SSLEGLYLNNN 326
             LQ L L  N   G+ P S+S C                         +SLE L L +N
Sbjct: 326 GSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDN 385

Query: 327 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 386
            + G+IP  +   + L+ I +  N+L G IP E   L  L+      NNI+G +P     
Sbjct: 386 LVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGK 445

Query: 387 L-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
           L ++K + L+ N L G++    FFNCS++  +  + NRL G +P     LS+L+ L LG+
Sbjct: 446 LQNLKDLILNNNQLTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGN 504

Query: 446 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQF---EIF 502
           NN  GE+  +L +   L  LDL+ N+L G IPP        ++ S   S +       + 
Sbjct: 505 NNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVG 564

Query: 503 FSIEGHQGFLE------KQNHEIFEFTTKNIAYIYQGKVLSLLSG------LDLSCNKLI 550
            S +G  G +E      ++  +I    + +   +Y G +LSL +       LDLS N+L 
Sbjct: 565 NSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLR 624

Query: 551 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 610
           G IP +IG +  +Q L LSHN L+G IP T   LK++   D S+N+L G+IP     L  
Sbjct: 625 GKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSF 684

Query: 611 LEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 655
           L    ++ N L+G IP+ + Q +T   + Y  N  LCG+PLP C+
Sbjct: 685 LVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECK 728

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 213/640 (33%), Positives = 325/640 (50%), Gaps = 40/640 (6%)

Query: 21  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
           + ++ I S  L+ SLP  +    SL+ L +S   LTG++  S L     ++ L LS+N  
Sbjct: 83  ITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPES-LGDCLGLKVLDLSSNGL 141

Query: 81  --QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFP 138
              IP SL  L N   L I N+  N++  +I      I+   +L +L L  N   G I P
Sbjct: 142 VGDIPWSLSKLRNLETL-ILNS--NQLTGKIPPD---ISKCSKLKSLILFDNLLTGSI-P 194

Query: 139 KFLYHQHDLEYVDLSHIK-MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 197
             L     LE + +   K ++G+ P+  + + + L  L L   S++G     +   K+L 
Sbjct: 195 TELGKLSGLEVIRIGGNKEISGQIPSE-IGDCSNLTVLGLAETSVSGNLPSSLGKLKKLE 253

Query: 198 QLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
            L +    I G IP  +G+   L  L+++ NS   L GSIP   G +  L+ L L  N L
Sbjct: 254 TLSIYTTMISGEIPSDLGNCSELVDLFLYENS---LSGSIPREIGQLTKLEQLFLWQNSL 310

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
            G IPE +   C NL+ + LS N L G + S    L+ L+   +  N+F G IP ++S C
Sbjct: 311 VGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNC 369

Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 375
           SSL  L L+ N + G IP  LG LT+L      +N LEG IP        LQ LD+S N+
Sbjct: 370 SSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNS 429

Query: 376 ISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 434
           ++G++PS  F   ++ ++ L  N L G + +    NCSSLV L L +NR+ G IP  +  
Sbjct: 430 LTGTIPSGLFMLRNLTKLLLISNSLSGFIPQ-EIGNCSSLVRLRLGFNRITGEIPSGIGS 488

Query: 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 494
           L +++ L    N L G+V  ++   ++LQ++DLSNN+L G +P    + +  +    S++
Sbjct: 489 LKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSAN 548

Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV---LSLLSG---LDLSCNK 548
              QF     I    G L   N  I    +KN   ++ G +   L + SG   LDL  N+
Sbjct: 549 ---QFS--GKIPASLGRLVSLNKLIL---SKN---LFSGSIPTSLGMCSGLQLLDLGSNE 597

Query: 549 LIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 607
           L G IP ++G++  ++  LNLS N LTG IPS  ++L  +  LDLS+N L G +   L  
Sbjct: 598 LSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLAN 656

Query: 608 LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
           ++ L   +++YN+ SG +P+ K  F   +    EGN  LC
Sbjct: 657 IENLVSLNISYNSFSGYLPDNKL-FRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  230 bits (586), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 226/732 (30%), Positives = 339/732 (46%), Gaps = 33/732 (4%)

Query: 6   VNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-GSISSSPL 64
           + G +    L +L +L+ LY+  N+   S     ++  SL +LD+SSN LT  SI     
Sbjct: 88  LTGTLNLNNLTALSNLRSLYLQGNNFS-SGDSSSSSGCSLEVLDLSSNSLTDSSIVDYVF 146

Query: 65  VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
               ++  +  S+N     +   P  +  R+   +  NN    EI E+     P   L  
Sbjct: 147 STCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPN-SLKH 205

Query: 125 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 184
           L LS N   G           +L    LS   ++G+     L N   LETL L  +SL G
Sbjct: 206 LDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIG 265

Query: 185 PFRLPIHSH----KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 240
             ++P   +    + LRQL +++N   G IP ++  +  +L V + S N+L G +P SF 
Sbjct: 266 --KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSFT 323

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 300
           +   LQ L+L NN L+G+    +      +  L L  NN+ G +     N +NL+ L L 
Sbjct: 324 SCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLS 383

Query: 301 GNRFVGEIPQ---SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
            N F GE+P    SL   S LE L + NN L G +P  LG    L+ I +  N L G IP
Sbjct: 384 SNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIP 443

Query: 358 VEFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
            E   L  L  L +  NN++G +P   C    +++ + L+ N+L G L   +   C++++
Sbjct: 444 KEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPE-SISKCTNML 502

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 475
            + LS N L G IP  +  L +L+ L LG+N+L G +  +L     L  LDL++NNL G 
Sbjct: 503 WISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGN 562

Query: 476 IPPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQGFLE-----KQNHEIFEFT-TKN 526
           +P    +     +  S S       + E      G  G +E      +  E F    +  
Sbjct: 563 LPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCP 622

Query: 527 IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPST 580
              IY G  + + S       LDLS N + G IP   G +  +Q LNL HN LTG+IP +
Sbjct: 623 KTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDS 682

Query: 581 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSY 640
           F  LK +  LDLS+N L G +P  L  L  L    V+ NNL+G IP +  Q  TF  + Y
Sbjct: 683 FGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRY 741

Query: 641 EGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFT-TSYVIVIFGIVIVLY 699
             N+ LCG+PLP C S  + P  S  + +  ++    S  I F+    V++I  +     
Sbjct: 742 ANNSGLCGVPLPPCSS-GSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLIMALYRARK 800

Query: 700 VNSYWRRRWFYF 711
           V    ++R  Y 
Sbjct: 801 VQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  226 bits (576), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 316/677 (46%), Gaps = 91/677 (13%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           L HLQ L ++ N L G LP  ++ +  L  LD+S N  +GS+  S  + L ++  L +SN
Sbjct: 112 LKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSN 171

Query: 78  NYF--QIPISLEPLFNYSRLKI-FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           N    +IP  +  L N S L +  N+ + +I +EI               +SL  N+   
Sbjct: 172 NSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEI-------------GNISLLKNFAAP 218

Query: 135 FIF-----PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
             F     PK +     L  +DLS+  +    P    E +  L  L LV+  L G     
Sbjct: 219 SCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHN-LSILNLVSAELIGLIPPE 277

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           + + K L+ L +S N++ G +P+++ ++   L  F+   N L GS+PS  G  K L  L 
Sbjct: 278 LGNCKSLKSLMLSFNSLSGPLPLELSEI--PLLTFSAERNQLSGSLPSWMGKWKVLDSLL 335

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309
           L+NN  +GEIP H    C  L+ L+L++N L G +        +L+ + L GN   G I 
Sbjct: 336 LANNRFSGEIP-HEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIE 394

Query: 310 QSLSKCSSLEGLYLNNNSL-----------------------LGKIPRWLGNLTRLQYII 346
           +    CSSL  L L NN +                        G+IP+ L   T L    
Sbjct: 395 EVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFT 454

Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR 405
              N LEG +P E     SL+ L +SDN ++G +P     L S+  ++L+ NM  G++  
Sbjct: 455 ASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPV 514

Query: 406 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV---------SVQL 456
               +C+SL TLDL  N L G IPD +  L+QL  L+L +NNL G +          +++
Sbjct: 515 -ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 457 CELNQLQ---LLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE 513
            +L+ LQ   + DLS N L GPIP                  +E  E    +E     + 
Sbjct: 574 PDLSFLQHHGIFDLSYNRLSGPIP------------------EELGECLVLVE-----IS 610

Query: 514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573
             N+ +      +++       L+ L+ LDLS N L G IP ++GN  ++Q LNL++N L
Sbjct: 611 LSNNHLSGEIPASLSR------LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQL 664

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 633
            G IP +F  L  +  L+L+ NKL+G +P  L  LK L    +++NNLSGE+    +   
Sbjct: 665 NGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTME 724

Query: 634 TFNESSYEGNTFLCGLP 650
                  E N F   +P
Sbjct: 725 KLVGLYIEQNKFTGEIP 741

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 213/710 (30%), Positives = 327/710 (46%), Gaps = 101/710 (14%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGS 58
           +S+  +NG V   G      L  L ++ N L G +     + + + L+ L+VSSN L   
Sbjct: 106 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 163

Query: 59  ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLI 116
              S  + L S+E L LS N       +  + +     LK      N+I  ++  S  + 
Sbjct: 164 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 222

Query: 117 APKFQLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                L  L +SS N+  G     FL     L+++D+S  K++G+F +  +   T+L+ L
Sbjct: 223 ----NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLL 274

Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
            + ++   GP  +P    K L+ L ++ N   G IP  +     +L   + S N   G++
Sbjct: 275 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 332

Query: 236 PSSFG-------------------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
           P  FG                          M+ L++LDLS N  +GE+PE L     +L
Sbjct: 333 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 392

Query: 271 QFLALSNNNLQGHLFSRNFNLT-----NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
             L LS+NN  G +     NL       LQ L L+ N F G+IP +LS CS L  L+L+ 
Sbjct: 393 LTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query: 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH 385
           N L G IP  LG+L++L+ + +  N LEG IP E   + +L+ L +  N+++G +PS   
Sbjct: 450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 509

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
                                   NC++L  + LS NRL G IP W+  L  L+ L L +
Sbjct: 510 ------------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 545

Query: 446 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF--------DNTTLHESYSNSSSPDE 497
           N+  G +  +L +   L  LDL+ N  +G IP            N    + Y    +   
Sbjct: 546 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 605

Query: 498 QFEIFFSIEGHQGFLEKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDL 544
           + E      G    LE Q   + ++   +T+N     + +Y G              LD+
Sbjct: 606 KKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 661

Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
           S N L G+IP +IG++  +  LNL HN+++GSIP    +L+ +  LDLS+NKL+G+IP  
Sbjct: 662 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 721

Query: 605 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
           +  L  L    ++ NNLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 722 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 770

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  223 bits (567), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 195/616 (31%), Positives = 289/616 (46%), Gaps = 101/616 (16%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           L HL+++ ++ N   GS+P  + N + L  +D+SSN  TG+I                  
Sbjct: 91  LKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNI------------------ 132

Query: 78  NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
                P +L  L N   L +F              +SLI P                  F
Sbjct: 133 -----PDTLGALQNLRNLSLF-------------FNSLIGP------------------F 156

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 197
           P+ L     LE V  +   +NG  P+ +  N ++L TL+L ++  +GP    + +   L+
Sbjct: 157 PESLLSIPHLETVYFTGNGLNGSIPSNI-GNMSELTTLWLDDNQFSGPVPSSLGNITTLQ 215

Query: 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 257
           +L +++NN+ G +PV + + L +L   +   N+L G+IP  F + K +  + LSNN  TG
Sbjct: 216 ELYLNDNNLVGTLPVTLNN-LENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTG 274

Query: 258 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS 317
            +P  L   C +L+     +  L G + S    LT L  L L GN F G IP  L KC S
Sbjct: 275 GLPPGLG-NCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKS 333

Query: 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
           +  L L  N L G+IP  LG L++LQY+ +  N+L G +P+   ++ SLQ L +  NN+S
Sbjct: 334 MIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLS 393

Query: 378 GSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 436
           G LP     L  +  + L +N   G + +    N SSL  LDL+ N   G IP  +    
Sbjct: 394 GELPVDMTELKQLVSLALYENHFTGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQK 452

Query: 437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 496
           +L  L+LG+N LEG V   L   + L+ L L  NNL G +P                   
Sbjct: 453 KLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLP------------------- 493

Query: 497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV------LSLLSGLDLSCNKLI 550
                         F+EKQN   F+ +  N    + G +      L  ++ + LS N+L 
Sbjct: 494 -------------DFVEKQNLLFFDLSGNN----FTGPIPPSLGNLKNVTAIYLSSNQLS 536

Query: 551 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 610
           G IPP++G+L +++ LNLSHN L G +PS  SN   +  LD S+N LNG IP  L  L  
Sbjct: 537 GSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTE 596

Query: 611 LEVFSVAYNNLSGEIP 626
           L   S+  N+ SG IP
Sbjct: 597 LTKLSLGENSFSGGIP 612

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	717
255581263	912	serine-threonine protein kinase, plant-t	0.974	0.766	0.525	0.0
224123984	1016	predicted protein [Populus trichocarpa]	0.986	0.695	0.482	1e-175
224142481	781	predicted protein [Populus trichocarpa]	0.945	0.868	0.482	1e-171
224073436	1014	predicted protein [Populus trichocarpa]	0.986	0.697	0.466	1e-168
224134891	953	predicted protein [Populus trichocarpa]	0.977	0.735	0.459	1e-166
224073382	1309	predicted protein [Populus trichocarpa]	0.972	0.532	0.467	1e-165
224073422	969	predicted protein [Populus trichocarpa]	0.976	0.722	0.468	1e-165
224098008	1097	predicted protein [Populus trichocarpa]	0.944	0.617	0.466	1e-162
224073452	710	predicted protein [Populus trichocarpa]	0.926	0.935	0.479	1e-160
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.966	0.473	0.451	1e-157

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/721 (52%), Positives = 492/721 (68%), Gaps = 22/721 (3%)

Query: 1   MSSCEVNGVVRS-QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSI 59
           +S C + G + + QGLC L+HL+ L ++SN+  G LPWC++N+TSL++LD+SSNQ  G I
Sbjct: 208 LSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDI 267

Query: 60  SSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPK 119
           S+SPL  L S+ +L +SNN+FQ+P SL P FN+S LK    +NN I  E  E HS  AP+
Sbjct: 268 SNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APR 324

Query: 120 FQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
           FQL ++ + S YG    FP FLYHQ++L++VDLSH+ + GEFPNWLL NNT+LE L LVN
Sbjct: 325 FQLISI-IFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVN 383

Query: 180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
           +SL+G  +LP+H H  L  LD+SNN++  HIP++IG  LP L + N S N  DGSIPSSF
Sbjct: 384 NSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSF 443

Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
           GNM  L+ILDLSNN L+G IPEHLA GC +L  L LSNN+LQG +FS+ FNLTNL WL+L
Sbjct: 444 GNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLEL 503

Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 359
           + N F G IP+SLSK S+L  + L++N L G IP W+GNL+ LQ +I+ NN L+GPIPVE
Sbjct: 504 DKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVE 562

Query: 360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
           FCQL  L++LD+++N++SG LPSC  P SI  VHLS+NM+ G      F     LVTLDL
Sbjct: 563 FCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDL 621

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
           S NR+ G IP  + G++ L  L L  N  +GE+  Q+C L QL L+ L++NNL G IP C
Sbjct: 622 SSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC 681

Query: 480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 539
                L    S+S +PD           +             FTTK  +Y YQGK+LS +
Sbjct: 682 -----LQLDQSDSLAPDVPPVPNPLNPYYLPV------RPMYFTTKRRSYSYQGKILSYI 730

Query: 540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
           SG+D SCNKL G IPP++GN + I +LNLS+N  TG IPSTFSNLK +ESLDLS N LNG
Sbjct: 731 SGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNG 790

Query: 600 KIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC---RS 656
            IP QL+ELK L  FSVA+NNL G+ P+   QFATF  SSYEGN  LCGLPLP     R 
Sbjct: 791 DIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTERE 850

Query: 657 PATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI 716
            ++ P AS  +E+  N +DM++F+ +F  SY  VI G+ +VLY+N  WRR WF FV++ I
Sbjct: 851 ASSAPRASAMDEE-SNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICI 909

Query: 717 T 717
           +
Sbjct: 910 S 910

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 352/730 (48%), Positives = 465/730 (63%), Gaps = 23/730 (3%)

Query: 4   CEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 63
           C++NG + +QGLC L +L++L+++ N+L GSLP C  N++SL++LDVS NQ  G+I+SSP
Sbjct: 274 CDLNGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSP 333

Query: 64  LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 123
           L +L S+E + LSNN+FQ+PIS++P  N+S L+ F+++NN +  E    H LI PKFQL 
Sbjct: 334 LTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-PKFQLV 392

Query: 124 TLSLSSNYGDGFIF--PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181
             SLS +  +      P FLY+QHDL  +DLS     G FP+WLL+NNT+LE LFL  +S
Sbjct: 393 FFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENS 452

Query: 182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 241
             G  +L  H +  +  +D+SNNN+ G IP  I  +  +L+    + N L G IPS  GN
Sbjct: 453 FFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGN 512

Query: 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301
              L +LDLSNN L+    E      + L FL LSNNNL G L +   N + L +L L  
Sbjct: 513 SSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSD 568

Query: 302 NRFVGEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 360
           N F G+I    S   ++   L L+NN   G +PRW  NLT++  I +  NH  GPIPVEF
Sbjct: 569 NNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEF 628

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           C+LD L+ LD+SDNN+  S+PSCF+P  I  VHLSKN L G L  G F+N SSLVTLDL 
Sbjct: 629 CKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYG-FYNSSSLVTLDLR 687

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 480
            N   GSI +W+  LS LS L+L  NN +GE  VQLC L QL +LD+S N L GP+P C 
Sbjct: 688 DNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCL 747

Query: 481 DNTTLHESYSNSS---------SPDEQFEIFFSIEGH---QGFLEKQNHEIFEFTTKNIA 528
            N +  ESY  +S         +P E+    F+         ++     E+ EFT K++ 
Sbjct: 748 GNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMY 807

Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
           Y Y+GK+LS +SG+DLS NK  G IPP++GNL+ +  LNLSHNNLTGSIP+TFSNLK +E
Sbjct: 808 YGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIE 867

Query: 589 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 648
           S DLS N L+G IPH+L E+ TLEVFSVA+NNLSGE PE K QF TF+ESSYEGN FLCG
Sbjct: 868 SFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCG 927

Query: 649 LPLPICRSPATMPEASIGNE--QDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRR 706
            PL    S    P   + N+  +DD  IDM+ F+I+    Y++V+ GI  VLY+N YWR 
Sbjct: 928 PPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRC 987

Query: 707 RWFYFVEMWI 716
            WF F++  I
Sbjct: 988 GWFNFIDYCI 997

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 348/721 (48%), Positives = 470/721 (65%), Gaps = 43/721 (5%)

Query: 5   EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
           ++ G +  +GLC L  LQEL I+ NDL G LP C+ N+ +L++LD+S N  +G+IS S +
Sbjct: 63  QLKGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRI 121

Query: 65  VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
             LTSI +L LS+N+FQIPISL P FN S LK  N ++NEI       H+LI P+FQL  
Sbjct: 122 GSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQR 180

Query: 125 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 184
           LSL+  +G G  FPKFLY+QHDL++VDLSHIK+ GEFP+WLL+NNTKLE L+LVN SL+G
Sbjct: 181 LSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSG 239

Query: 185 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 244
             +LP  SH  L +LD+S N+I+  IP KIG   P L   N S N   GSIPSS  NM  
Sbjct: 240 SLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSS 299

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
           L +LDLSNN L+G IPE L  GC++L+ L LSNN+L+G  F R+FNL  L  L L GN+ 
Sbjct: 300 LGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQL 359

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
            G +P SLS  S LE L ++ N+L GKIPRW+G ++ LQY+ +  N+L G +P  FC   
Sbjct: 360 TGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCS-- 417

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
                                  ++ +V+LSKN L G L  G    C SL  LDLS+N  
Sbjct: 418 ---------------------SRTMTEVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYF 455

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD--- 481
            G IP+ +  L +LS L+LG+NNLEG++  QLC+L +L L+DLS+N+L G I PC     
Sbjct: 456 GGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTS 515

Query: 482 ------NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 535
                  T+L+ S ++    +   +I F +   +   +   ++  EFTTK+I+Y ++G +
Sbjct: 516 KWQRERETSLNPSGNSLGRENRGPQIVFPVPAVE---DPSMNKSVEFTTKSISYSFKGII 572

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           L  +SG+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNLK +ESLDLS N
Sbjct: 573 LKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYN 632

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP--I 653
            LNG+IP QL++L  L  FSVA+NNLSG+ PE  AQF+TFN+S YEGN  LCG PL    
Sbjct: 633 NLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNC 692

Query: 654 CRS--PATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYF 711
            R+  P+ +P +    ++++ +IDM++F +TF+ +Y++V+  I  VLY+N  WRR WFYF
Sbjct: 693 TRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYF 752

Query: 712 V 712
           +
Sbjct: 753 I 753

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 347/744 (46%), Positives = 468/744 (62%), Gaps = 37/744 (4%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           ++ C+++G + +QG C L +L++L ++ N+L GSLP C+ N++SL++LDVS NQ TG+I+
Sbjct: 255 VAECDLHGTLPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIA 314

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
           S PL +LTS+E L LSNN F++PIS++P  N+S LK F++ENN++  E     +LI PKF
Sbjct: 315 SGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKF 373

Query: 121 QLNTLSLS-SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
           QL    LS +        P FLY+Q+D+  +DLSH  +   FP+WLL+NNT+LE L+L N
Sbjct: 374 QLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSN 433

Query: 180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
           +S  G  +L  H +  + +LD+SNNN+ G IP  I  + P+++    + N   G IPS  
Sbjct: 434 NSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCL 493

Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
           GN+  L+ILDLSNN L+    E L      + FL LSNNNL G L +  FN + L++L L
Sbjct: 494 GNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYL 549

Query: 300 EGNRFVGEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
            GN F G+I   L     +   L L++N   G +PRWL N T L  I +  N+ +GPI  
Sbjct: 550 HGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILR 609

Query: 359 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 418
           +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SSLVT+D
Sbjct: 610 DFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMD 668

Query: 419 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 478
           L  N   GS P+W+  LS LS L+L  N+ +GE+ VQLC L QL +LD+S N L GP+P 
Sbjct: 669 LRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPS 728

Query: 479 CFDNTTLHESYSNSSSPDEQFEIFFSIEG-----------------HQGFLEKQNHEIFE 521
           C  N T  ES   + +      +  SIE                   +GFL     E+ E
Sbjct: 729 CLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIE 788

Query: 522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581
           FTTKN+ Y Y+GK LS +SG+DLS N  +G IPP+ G+L++I +LNLSHNNLTGSIP+TF
Sbjct: 789 FTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATF 848

Query: 582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 641
           SNLK +ESLDLS N LNG IP QL ++ TLEVFSVA+NNLSG  PE K QF TF+ES YE
Sbjct: 849 SNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYE 908

Query: 642 GNTFLCGLPL------------PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVI 689
           GN FLCG PL            P+   P          + DD  IDM+ F+I F   Y +
Sbjct: 909 GNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTV 968

Query: 690 VIFGIVIVLYVNSYWRRRWFYFVE 713
           V+  IV+VLY++ YWRRRW YF+E
Sbjct: 969 VVMIIVVVLYIDPYWRRRWSYFIE 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 340/740 (45%), Positives = 452/740 (61%), Gaps = 39/740 (5%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           ++ C+++G + +QG C L +L++L +A N+  GSLP C+ N++SL++LDVS NQ TG+ +
Sbjct: 204 VAECDLHGTLPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFT 263

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
           S PL +L S+E L+LSNN F++PIS++P  N+S LK F++ENN +  E     +LI PKF
Sbjct: 264 SGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKF 322

Query: 121 QLNTLSLSSNYGDGF--IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
           QL    LSS+       + P FLY+Q DL  +DLSH  + G FP+WLL+NNT+LE L+L 
Sbjct: 323 QLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLS 382

Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS 238
            +   G  +L  H +  + +LD+SNNN+ G I   I  + P+L+    + N   G IPS 
Sbjct: 383 ANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSC 442

Query: 239 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
            GN+  L  LDLSNN L+    E L +       L LSNN+L G + +  FN +  Q+L 
Sbjct: 443 LGNISSLLFLDLSNNQLSTVQLEQLTI-----PVLKLSNNSLGGQIPTSVFNSSTSQFLY 497

Query: 299 LEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
           L GN F G+I    L     L  L L+NN   G +PR   N T L+ + +  NH +GPIP
Sbjct: 498 LNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIP 557

Query: 358 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417
            +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L  G FFN S LVT+
Sbjct: 558 KDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTM 616

Query: 418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 477
           DL  N L GSIP+W+   S LS L+L  N+ +GE+ VQLC L QL +LD+S N L GP+P
Sbjct: 617 DLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLP 676

Query: 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGH-----------------QGFLEKQNHEIF 520
            C  N T  ES   +        +  S+E                   + F      E+ 
Sbjct: 677 SCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVI 736

Query: 521 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPST 580
           EF TKN+ Y Y+G +LS +SG+DLS N   G IP + GNL+ I++LNLSHNN T SIP+T
Sbjct: 737 EFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPAT 796

Query: 581 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSY 640
           FSNLK +ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG  PE K QF TF+ES Y
Sbjct: 797 FSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCY 856

Query: 641 EGNTFLCGLPL-------PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFG 693
           EGN FLCG PL       P+   P  +P+   G   D   IDM+ F+I+F   Y +V+  
Sbjct: 857 EGNPFLCGPPLRNNCSVEPVSSQP--VPDDEQG---DVGFIDMEFFYISFGVCYTVVVMT 911

Query: 694 IVIVLYVNSYWRRRWFYFVE 713
           I  VLY+N YWRRRW YF+E
Sbjct: 912 IAAVLYINPYWRRRWLYFIE 931

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 345/738 (46%), Positives = 456/738 (61%), Gaps = 41/738 (5%)

Query: 7    NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
            N +    G C + +L++L ++ N+  GSLP C+ N++SL++LD+S NQ TG+I+ SPL +
Sbjct: 560  NNMFTGSGWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTN 619

Query: 67   LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
            L S+E L LSNN F++P S++P  N+S LK F  ENN +  E      LI PKFQL   S
Sbjct: 620  LISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFS 678

Query: 127  LS-SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP 185
            LS +        P FLY+Q+ L ++DLSH  + G FP+WLL+NNT+LE L+L  +S+ G 
Sbjct: 679  LSKTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGT 738

Query: 186  FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 245
             +L  H + ++ +LD+SNNN+ G IP  I  + P+L     + N   G IPS  GNM  L
Sbjct: 739  LQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSL 798

Query: 246  QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305
             +LDLSNN L+    E L      + FL LSNNNL G + +  FN +  ++L L  N F 
Sbjct: 799  GVLDLSNNQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFW 854

Query: 306  GEIPQS-LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQL 363
            G+I  S L+   +   L L+NN   G +PRW  N T L  I +  NH EGPI   F C+L
Sbjct: 855  GQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKL 914

Query: 364  DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
            D L+ LD+S+NN+ G +PSCF+   I  VHLSKN L G LK   F+N SSLVT+DL  N 
Sbjct: 915  DQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNS 973

Query: 424  LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483
              GSIP+WV  LS LS L+L  N+L+GE+ VQLC L QL +LD+S N L GP+P C +N 
Sbjct: 974  FTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENL 1033

Query: 484  TLHES--------------------YSNSSSPDEQFEIFFSIEGH-QGFLEKQNHEIFEF 522
            T  ES                    Y+    P +   I+  ++G+   F E    E+ EF
Sbjct: 1034 TFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTE----EVIEF 1089

Query: 523  TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
            TTKN+ Y Y+GK+LS +SG+DLS N  +G IPP+ GNL+ I +LNLSHNNLTGSIP+TFS
Sbjct: 1090 TTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFS 1149

Query: 583  NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEG 642
            NLK +ESLDLS N  NG IP QL E+ TLEVFSVA+NNLSG+ PE K QF TF+ES YEG
Sbjct: 1150 NLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEG 1209

Query: 643  NTFLCGLPLP-------ICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIV 695
            N FLCG PL        +   P          ++DD  IDM+ F+I+F+  Y +V+  I 
Sbjct: 1210 NPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIA 1269

Query: 696  IVLYVNSYWRRRWFYFVE 713
             VLY+N YWRRRW YF+E
Sbjct: 1270 AVLYINPYWRRRWLYFIE 1287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 345/737 (46%), Positives = 455/737 (61%), Gaps = 37/737 (5%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           +  C+++G + +QG C L +L++L +A N+  G+LP C+ N++SL +LDVS NQ TG+I 
Sbjct: 230 VGECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIV 289

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
           S PL +L S+E L LSNN F++P S++P  N+S LK F++ENN +  E     +LI PKF
Sbjct: 290 SGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKF 348

Query: 121 QLNTLSL-SSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
           QL  LSL  +        P FLY+Q+DL  +DLSH  + G FP+WLL+NNT++E L L +
Sbjct: 349 QLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSD 408

Query: 180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
           +S  G  +LP H +  + +LD+SNNN+   IP  I  +LP+L       N   G IPS  
Sbjct: 409 NSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCL 468

Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
           GN+  L +LDLSNN L+    E L      L FL LSNNNL G +    FN + L++L L
Sbjct: 469 GNISSLSVLDLSNNQLSTVKLELLTT----LMFLKLSNNNLGGQIPISVFNSSTLEFLYL 524

Query: 300 EGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
            GN F G+I   SL +      L L+NN   G +PRW  N T L+ I +  NH +GPIP 
Sbjct: 525 NGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPR 584

Query: 359 EF-CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417
           +F C+ D L+ LD+S+NN+SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+
Sbjct: 585 DFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTM 643

Query: 418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 477
           DL  N    SIP+W+  LS LS L+L  N+ +           QL +LD+S N L GP+P
Sbjct: 644 DLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLP 693

Query: 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGH----------------QGFLEKQNHEIFE 521
            C  N T  ES   +      F+I  SIE                  +GF      E+ E
Sbjct: 694 SCLGNLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIE 753

Query: 522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581
           FTTK ++Y Y+GKVL+ +SG+DLS N  +G IPP+ GNL+ I +LNLSHNNLTGSIP+TF
Sbjct: 754 FTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATF 813

Query: 582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 641
           SNLK +ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG+ PE K QF TF+ES YE
Sbjct: 814 SNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYE 873

Query: 642 GNTFLCGLPLP-ICRSPATMPEASIGNEQ-DDNLIDMDSFFITFTTSYVIVIFGIVIVLY 699
           GN FLCG PL   C   A   +    +EQ DD  +DM+ F+I+F   Y +V+  I  VLY
Sbjct: 874 GNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLY 933

Query: 700 VNSYWRRRWFYFVEMWI 716
           +N YWRRRW +F+E  I
Sbjct: 934 INPYWRRRWLFFIEDCI 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 336/720 (46%), Positives = 447/720 (62%), Gaps = 43/720 (5%)

Query: 1    MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
            ++ C+++G + +QG C L +L++L +A N+  G+LP C+ N++SL++LDVS NQ TG+I+
Sbjct: 392  VAECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIA 451

Query: 61   SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
              PL  L S+E L LSNN F++PIS++P  N+S LK F++ENN +  E     +LI PKF
Sbjct: 452  FGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKF 510

Query: 121  QLNTLSLSSNYGDGFI---FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL 177
            QL    LSS+     +      FLY+Q+DL  +DLSH  + G FP+WLL+NNT++E L+L
Sbjct: 511  QLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYL 570

Query: 178  VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237
              +S  G  +L  H +  + +LD+SNNNI G IP  I  + P+L++   + N   G IPS
Sbjct: 571  SENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPS 630

Query: 238  SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
              GN   L  LDLSNN L+    E L      +Q L LSNN+L G + +  FN +  Q+L
Sbjct: 631  CLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGGQIPTSVFNSSISQYL 686

Query: 298  QLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
             L GN F G+I    L        L L+NN   G +PR   N T  + + +  N  +GPI
Sbjct: 687  YLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPI 746

Query: 357  PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 416
            P +FC+LD L+ LD+SDN +SG +PSCF+P  I  +HLSKN L G L  G F+N SSLVT
Sbjct: 747  PRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVT 805

Query: 417  LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
            +DL  N   GSIP+W+  LS LS L+L  NN +GE++VQLC L QL +LD+S N L GP+
Sbjct: 806  MDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPL 865

Query: 477  PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 536
            P C  N TL E   N+        I+FS+                           GKVL
Sbjct: 866  PSCLGNLTLKEIPENARGS----RIWFSV--------------------------MGKVL 895

Query: 537  SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
            S + G+DLS N  +G IPP+ GNL++I +LNLSHNNLTGSIP+TFSNLK +ESLDLS N 
Sbjct: 896  SYMYGIDLSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNN 955

Query: 597  LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATF-NESSYEGNTFLCGLPLPICR 655
            LNG IP QL E+ TLEVFSVAYNNLSG  PE K QF TF +E+ YEGN FLCG PL    
Sbjct: 956  LNGAIPPQLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNC 1015

Query: 656  SPATMPEASIGNEQ--DDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVE 713
            S   +P   + N++  DD  IDM+ F+I+F   Y +V+  I  VLY+N YWRRRW YF+E
Sbjct: 1016 SEEAVPLQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIE 1075

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 334/696 (47%), Positives = 434/696 (62%), Gaps = 32/696 (4%)

Query: 42  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
           M+SL++LDVS NQ TG+I+  PL +L S+E L LSNN F++PIS++P  N+S LK F++E
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF--IFPKFLYHQHDLEYVDLSHIKMNG 159
           NN++  E     +LI PKFQL    LSS+       + P FLY+Q DL  +DLSH  + G
Sbjct: 61  NNKLVTEPAAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITG 119

Query: 160 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
            FP+WLL+NNT+LE L+L ++S  G  +L  H H  +  LD+SNNN+ G IP  I  + P
Sbjct: 120 MFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFP 179

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
           +L+    + N   G IPS  GN+  L  LDLSNN L+    E L    V    L LSNNN
Sbjct: 180 NLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNN 235

Query: 280 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGN 338
           L G + +  FN + L +L L GN F G+I    L + +    L L+NN   G +PR   N
Sbjct: 236 LGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVN 295

Query: 339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
            + L  I +  NH +GPIP +FC+ D L+ LD+S+NN+SG +PSCF P  I  VHLSKN 
Sbjct: 296 FSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNR 355

Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 458
           L G L    FFN S LVT+DL  N   GSIP+W+  LS LS L+L  N+ +GE+ +QLC 
Sbjct: 356 LSGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCL 414

Query: 459 LNQLQLLDLSNNNLHGPIPPCFDNTTLHES---------YSNSSSPDEQFEIFFSIEG-- 507
           L QL +LD+S+N L GP+P C  N T  +S         Y   S   E+   ++ I G  
Sbjct: 415 LEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIEK--AYYEIMGPP 472

Query: 508 --------HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN 559
                      FL     E+ EFTTKN+ Y Y+GKVL+ + G+DLS N  IG IPP+ GN
Sbjct: 473 LVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGN 532

Query: 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619
           L++I ++NLSHNNLTGSIP+TFSNL H+ESLDLS N LNG IP Q  E+ TLEVFSVA+N
Sbjct: 533 LSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHN 592

Query: 620 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-ICRSPATMPEASIGNEQ-DDNLIDMD 677
           NLSG+ PE   QF TF+ES YEGN FLCG PLP  C   A + +    +EQ DD  IDM+
Sbjct: 593 NLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDME 652

Query: 678 SFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVE 713
            F+I+F   Y +V+  I  VLY+N YWRRRW YF+E
Sbjct: 653 FFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIE 688

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 328/726 (45%), Positives = 453/726 (62%), Gaps = 33/726 (4%)

Query: 13   QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 72
            QGLC L +LQEL ++ N   GS+  C+ N+TSLR LD+S N+ +G++ SS    L  +E 
Sbjct: 736  QGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEF 795

Query: 73   LMLSNNYFQIPISLEPLFNYSRLKIFN--AENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
            L LS+N FQ    +     +S+L++ +    NN +  E +E  + + P FQL    LSS 
Sbjct: 796  LSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLE-SEDQTWV-PSFQLKVFRLSSC 853

Query: 131  YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 190
                   P FL++QHDL  VDLS+  +  +FP WL++NNT+LE L L N+SL G F LP 
Sbjct: 854  ILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPY 913

Query: 191  HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
              +     +D+SNN ++G +P  I   LP+L   N S N+ +GSIPS FG M+ L  LDL
Sbjct: 914  RPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDL 972

Query: 251  SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ 310
            SNN  TG IPE LA+GC +L++L LS N+L G +F R  NL +L+ L+L+ N F G+IP 
Sbjct: 973  SNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD 1032

Query: 311  SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 370
             LS  S LE LY+++NS+ GK+P W+GN++ L  ++MPNN LEGPIPVEFC LD+L++LD
Sbjct: 1033 -LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLD 1091

Query: 371  ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
            +S+NN+SGSLPSCF P  +  VHL +N L G L +  F     L TLD+  N L+G IPD
Sbjct: 1092 LSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPD 1150

Query: 431  WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 490
            W+   S LS L+L  N+ +G++  QLC+L+++ +LDLS N+L G IP C +       + 
Sbjct: 1151 WISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFR 1210

Query: 491  NSSSPDEQFEI--FFSIEGHQGFLEKQNH-----------------EIFEFTTKNIAYIY 531
            +      +F I  +F   G   +L    H                  + EFTTKN    Y
Sbjct: 1211 SG-----KFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFY 1265

Query: 532  QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 591
            +G  L  ++G+DLS NKL G IPP+IGNL+++  LNLSHN LTG IP+ FS LK +ESLD
Sbjct: 1266 KGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLD 1325

Query: 592  LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651
            LS N L G IP +L EL  L VFSVAYNNLSG+IPE  AQF TF E+SY GN +LCG  L
Sbjct: 1326 LSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLL 1385

Query: 652  PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYF 711
               ++ +   E +   E +  L D D F+++F  SYV+V+ G+  VLY+N  WR++WF+ 
Sbjct: 1386 R--KNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHV 1443

Query: 712  VEMWIT 717
            +++ IT
Sbjct: 1444 IDVLIT 1449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	717
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.960	0.689	0.385	2e-118
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.956	0.633	0.383	1.1e-112
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.979	0.787	0.362	4.4e-107
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.972	0.714	0.370	7.2e-107
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.959	0.757	0.366	4.9e-101
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.970	0.744	0.357	7.6e-96
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.885	0.658	0.345	3e-85
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.841	0.482	0.292	5.3e-57
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.864	0.528	0.309	7.1e-64
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.896	0.562	0.309	8.1e-64

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 277/719 (38%), Positives = 394/719 (54%)

Query:    14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
             G C   +++EL +++N L G  P C+ ++T LR+LD+SSNQLTG++ S+ L +L S+E L
Sbjct:   253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYL 311

Query:    74 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
              L  N F+   SL  L N S+LK+   ++     E+ E  +   PKFQL  ++L S   +
Sbjct:   312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEV-EFETSWKPKFQLVVIALRSCNLE 370

Query:   134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                 P FL HQ DL +VDLS  +++G FP+WLLENNTKLE L L N+S    F+LP  +H
Sbjct:   371 KV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH 427

Query:   194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
               L  L+VS N          G +LP L   N + N   G++PSS  NMK ++ LDLS+N
Sbjct:   428 NLLF-LNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHN 486

Query:   254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
                G++P     GC NL  L LS+N L G +F    N T L  + ++ N F G I +   
Sbjct:   487 RFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFR 546

Query:   314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
                SL  L ++NN L G IP W+G    L  + + NN LEG IP     +  LQ+LD+S 
Sbjct:   547 SLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSS 606

Query:   374 NNISGSLPSCFHPLSIKQ---VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
             N +SG +P   H  SI     + L  N L G +      N   ++ LDL  NRL+G++P+
Sbjct:   607 NRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPE 661

Query:   431 WVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL----- 485
             +++    +S L+L  NN  G++                    +G IP C  NT+      
Sbjct:   662 FIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKG 720

Query:   486 HESYS-------NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
              +SY         ++     FE    I+      E  +    EF TK+    Y G  L L
Sbjct:   721 DDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKL 780

Query:   539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
             L G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS LK+VESLDLS N+L 
Sbjct:   781 LFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQ 840

Query:   599 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSP 657
             G IP QL ++ +L VF+V+YNNLSG +P+ + QF TF   SY GN  LCG  + I C S 
Sbjct:   841 GPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNPLLCGKSIDISCASN 899

Query:   658 ATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI 716
                P  + G E D++ +DM+SF+ +F  +YV ++ GI+  L  +S W R WFY V+ ++
Sbjct:   900 NFHPTDN-GVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 274/715 (38%), Positives = 395/715 (55%)

Query:    14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI-EE 72
             G+C L+ L+EL ++SN L  SLP+C+ N+T LR LD+S+NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:    73 LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 132
             L L +N F        L N +RL +F   ++++     ++ S  AP FQL  L LS N  
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKL-SSKVGVIQVQTESSWAPLFQLKMLYLS-NCS 468

Query:   133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
              G     FL HQ DL +VDLSH K+ G FP WL++NNT+L+T+ L  +SL    +LPI  
Sbjct:   469 LGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
             H  L+ LD+S+N I   I   IG V P+L   N S N   G+IPSS G MK LQ+LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   253 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
             N L G++P     GC +L+ L LSNN LQG +FS++ NLT L  L L+GN F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   313 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 372
              K  +L  L +++N   G +P W+G ++RL Y+ M  N L+GP P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
              N+ SGS+P   +  S++++ L  N   G L  G  F  + L  LDL  N  +G I + +
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query:   433 DGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLH-ESYSN 491
             D  S+L  L+L +N+ +  +                     GPIP CF   +   E    
Sbjct:   765 DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query:   492 SSS-------------PDEQFEIFFSIE-GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
             + S             P  Q+    +++ G +   + +   + +F TK+    YQG +L 
Sbjct:   825 TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILR 884

Query:   538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
              + GLDLS N+L G IP +IG+L  I++LNLS N LTGSIP + S LK +ESLDLSNNKL
Sbjct:   885 YMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKL 944

Query:   598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP---IC 654
             +G IP  L +L +L   +++YNNLSGEIP +K    TF+E SY GN  LCGLP     I 
Sbjct:   945 DGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCIS 1003

Query:   655 RSPATMPEASIGNEQDDNLIDMDSF-FITFTTSYVIVIFGIVIVLYVNSYWRRRW 708
             +     P  S   ++++N  + +    + F  +   V     + L+   Y   RW
Sbjct:  1004 QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRW 1058

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 267/736 (36%), Positives = 406/736 (55%)

Query:     1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
             +S+ + +G ++ QG+C L  LQEL ++ N   G +P C +  + LR+LD+SSN L+G I 
Sbjct:   160 LSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIP 219

Query:    61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
                +    S+E L L +N F+   SL  +   + LK+F   +     +I E++     + 
Sbjct:   220 YF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQS 278

Query:   121 QLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
             QL+++ LS  N G     P FL++Q +L  +DLS+  ++G FP WLLENNT+L+ L L N
Sbjct:   279 QLSSIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQN 335

Query:   180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
             +S      LP  + +RL+ LD+S NN    +P  +G +L SL   N S N   G++PSS 
Sbjct:   336 NSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSM 393

Query:   240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
               M+ ++ +DLS N+ +G++P +L  GC +L +L LS+N   G +  ++ + T+L  L +
Sbjct:   394 ARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIM 453

Query:   300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 359
             + N F G+IP++L     L  + L+NN L G IPRWLGN   L+ + + NN L+G IP  
Sbjct:   454 DNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPS 512

Query:   360 FCQLDSLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417
                +  L +LD+S N +SGSLP  S      I  +H   N L G +    ++    L  L
Sbjct:   513 LFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LRLL 567

Query:   418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIP 477
             DL  N+L+G+IP +    S +S ++L  NNL G++ V                  +  IP
Sbjct:   568 DLRNNKLSGNIPLFRSTPS-ISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIP 626

Query:   478 PCFDNTTLHES-YSNSSS---PDEQFEIFFSIEG---HQGFLEKQNHEI-----F----E 521
              C  N +     +SN+ S   P      F  I     ++  +      +     F    E
Sbjct:   627 SCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVE 686

Query:   522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581
             F  K    +Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+GSIP +F
Sbjct:   687 FAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSF 746

Query:   582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 641
             SNL+ +ESLDLS NKL+G IP QL  L++L VF+V+YNNLSG IP+ K QF TF E SY 
Sbjct:   747 SNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYL 805

Query:   642 GNTFLCGLPLPICRSPATMPEASIGNEQDDN-LIDMDSFFITFTTSYVIVIFGIVIVLYV 700
             GN  LCG P        T+       + D++ L+D+   + +  T+YV V+ G ++ L  
Sbjct:   806 GNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCF 865

Query:   701 NSYWRRRWFYFVEMWI 716
             +S WRR WF  V+ +I
Sbjct:   866 DSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 273/736 (37%), Positives = 392/736 (53%)

Query:     6 VNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV 65
             ++G +  +  C + +L++L +  N   G LP C+ N+  LR+LD+SSNQL+G++ +S   
Sbjct:   247 LDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FN 305

Query:    66 HLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEI-TESHSLIAPKFQLNT 124
              L S+E L LS+N F+   SL PL N ++LK+F   +     ++ TES+ L  PKFQL  
Sbjct:   306 SLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTV 363

Query:   125 LSLS-SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA 183
              +L   + G     P FL +Q +L  VDLS  +++G+ P WLLENN +L+ L L N+S  
Sbjct:   364 AALPFCSLGK---IPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT 420

Query:   184 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 243
               F++P   HK L+ LD S N+I G +P  IG VLP L   N S N   G++PSS G M 
Sbjct:   421 -IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMN 478

Query:   244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 303
              +  LDLS N+ +GE+P  L  GC +L  L LS+N+  G +      LT+L  L++  N 
Sbjct:   479 DISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNL 538

Query:   304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG-NLTRLQYIIMPNNHLEGPIPVEFCQ 362
             F GEI   L    +L     +NN L G I   +  + + L  +++ NN LEG +P     
Sbjct:   539 FTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLA 598

Query:   363 LDSLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
             +  L  LD+S N +SG LPS        IK + L  N   G L      N      LDL 
Sbjct:   599 IHHLNFLDLSGNLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENA---YILDLR 654

Query:   421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCF 480
              N+L+GSIP +V+    ++ L+ G NNL G +                    +G IPPC 
Sbjct:   655 NNKLSGSIPQFVNTGKMITLLLRG-NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL 713

Query:   481 DN--TTLHESYSNSSSPDE-------QFEIF---FSIEGHQGFLEKQNHEI-FEFTTKNI 527
             ++  T L E    S    E       Q E +   F ++    + +     +  EF  K  
Sbjct:   714 NHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQR 773

Query:   528 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 587
                + G  L  + GLDLS N+L G IP ++G+L++++ LNLS N L+ SIP+ FS LK +
Sbjct:   774 YDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDI 833

Query:   588 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
             ESLDLS N L G IPHQL  L +L VF+V++NNLSG IP+   QF TFN++SY GN  LC
Sbjct:   834 ESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLC 892

Query:   648 GLPLP-ICRSPATMPEASIGNEQ---DDN---LIDMDSFFITFTTSYVIVIFGIVIVLYV 700
             G P    C       EA  G E+   DD+    IDM   + T  ++Y I + GI++++  
Sbjct:   893 GTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCF 952

Query:   701 NSYWRRRWFYFVEMWI 716
             +  WRR W   V+ +I
Sbjct:   953 DCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 263/718 (36%), Positives = 378/718 (52%)

Query:     7 NGVVRS---QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 63
             NG+  S   Q  C + +LQEL +   +  G LP C  N+  LR LD+SSNQLTG+I  S 
Sbjct:   205 NGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS- 263

Query:    64 LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 123
                L S+E L LS+N F+   SL PL N ++LK+F   + +   ++ +  S   P FQL+
Sbjct:   264 FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPLFQLS 322

Query:   124 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA 183
              L L     +    P FL +Q +L  VDLS  +++G  P WLLENN +LE L L N+S  
Sbjct:   323 VLVLRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT 380

Query:   184 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 243
               F++P   H  L+ LD S NNI G  P   G VLP+L   N S N   G+ PSS G M 
Sbjct:   381 -IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMY 438

Query:   244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 303
              +  LDLS N+L+GE+P+     C +L  L LS+N   GH   R  N T+L  L++  N 
Sbjct:   439 NISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNL 498

Query:   304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 363
             F G+I   L     L  L ++NN L G++P  L     L ++ +  N L G +P     L
Sbjct:   499 FTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSL 557

Query:   364 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
             D+  +L + +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N 
Sbjct:   558 DN--VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNS 612

Query:   424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNT 483
             L G IP  +   S++  L L  N L G +                    +  +    ++ 
Sbjct:   613 LTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESF 670

Query:   484 TLHESYSNSSSPDEQFEIFFS--IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541
              L   +  S+   E F + +S   E    F  KQ ++ +       A+ +    L+ + G
Sbjct:   671 YL--GFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIG-----AFQFSEGTLNSMYG 723

Query:   542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
             LDLS N+L G IP ++G+L +++ LNLSHN L+  IP +FS L+ +ESLDLS N L G I
Sbjct:   724 LDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSI 783

Query:   602 PHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATM 660
             PHQL  L +L +F+V+YNNLSG IP+ K QF TF+E+SY GN  LCG P    C +    
Sbjct:   784 PHQLTNLTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNS 842

Query:   661 PEASIGNEQDDN--LIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI 716
              E + G E+DD    IDM  F+ +   +YV  + GI++++ V+  WRR W   V+ +I
Sbjct:   843 EENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 266/745 (35%), Positives = 375/745 (50%)

Query:     1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSI 59
             +SS + +  +  Q L +L++L+ L +A N + G +P      + +LR LD+  N   G I
Sbjct:   203 LSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI 262

Query:    60 SSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENN-EIKAEITESHSLI 116
                 L  L  +  L LS+N     +P S   L +   L +  ++NN +    +    +L 
Sbjct:   263 PLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSL--SDNNFDGSFSLNPLTNLT 319

Query:   117 APKFQ--LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLET 174
               KF   L   SL          P FL +Q  L  VDLS   ++G  P WLL NN +LE 
Sbjct:   320 NLKFVVVLRFCSLEK-------IPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEV 372

Query:   175 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS 234
             L L N+S    F +P   H  L+  D S NNI G  P K+   LP+L   N S N   G 
Sbjct:   373 LQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGY 429

Query:   235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 294
              P+S G MK +  LDLS N+ +G++P     GCV++ FL LS+N   G    R  N  +L
Sbjct:   430 FPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSL 489

Query:   295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 354
               L+++ N F G I   LS  + L  L ++NN L G IPRWL     L Y+++ NN LEG
Sbjct:   490 DVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEG 549

Query:   355 PIPVEFCQLDSLQILDISDNNISGSLPSCFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSS 413
              IP     +  L  LD+S N  SG+LPS     L I  + L  N   G +   T     S
Sbjct:   550 TIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIP-DTLLK--S 605

Query:   414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXH 473
             +  LDL  N+L+GSIP + D    ++ L+L  NNL G +                    +
Sbjct:   606 VQILDLRNNKLSGSIPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLN 664

Query:   474 GPIPPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQG-FL-EK--------QNHEIF 520
             G IP C  N +   L E     + P    +    +E ++  FL +K        Q  EI 
Sbjct:   665 GVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEI- 723

Query:   521 EFTTKNIAYIYQGK------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574
             +F  K     Y G+      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L 
Sbjct:   724 KFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLL 783

Query:   575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFAT 634
             GSIPS+FS L  VESLDLS+N L G IP  L  L +L VF V+ NNLSG IP+ + QF T
Sbjct:   784 GSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNT 842

Query:   635 FNESSYEGNTFLCGLPLP-ICRSPATMPEASIGNEQDDN--LIDMDSFFITFTTSYVIVI 691
             F E SY GN  LCG P    C +  +  EA  G E++D+   IDM  F+ +  + YV  +
Sbjct:   843 FEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTAL 902

Query:   692 FGIVIVLYVNSYWRRRWFYFVEMWI 716
              G+++++  +  WRR W   V+ +I
Sbjct:   903 IGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 230/665 (34%), Positives = 341/665 (51%)

Query:    14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
             G+C L ++QEL ++ N L G LP C+ ++T LR+LD+SSN+LTG++ SS L  L S+E L
Sbjct:   239 GICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYL 297

Query:    74 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
              L +N F+   S   L N S L +    +     ++  S S   PKFQL+ ++L S   +
Sbjct:   298 SLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSCNME 356

Query:   134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                 P FL HQ DL +VDLS   ++G+ P+WLL NNTKL+ L L N+ L   F++P  +H
Sbjct:   357 KV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIPKSAH 413

Query:   194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
               L  LDVS N+     P  IG + P L   N S N    ++PSS GNM  +Q +DLS N
Sbjct:   414 NLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRN 472

Query:   254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
                G +P     GC ++  L LS+N L G +F  + N TN+  L ++ N F G+I Q L 
Sbjct:   473 SFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLR 532

Query:   314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
                +LE L ++NN+L G IP W+G L  L  +++ +N L+G IP+      SLQ+LD+S 
Sbjct:   533 SLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSA 592

Query:   374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 433
             N++SG +P      +   + L  N L G +      N      LDL  NR +G IP++++
Sbjct:   593 NSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVE---ILDLRNNRFSGKIPEFIN 649

Query:   434 GLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSS 493
              +  +S L+L  NN  G++                    +G IP C  NT+        +
Sbjct:   650 -IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFG-KECT 707

Query:   494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL--LSGLDLSC---NK 548
             S D  F I F  +   GF     H+ F  + KN   IY   +L+L  LS +D       K
Sbjct:   708 SYDYDFGISFPSDVFNGF---SLHQDFS-SNKN-GGIYFKSLLTLDPLS-MDYKAATQTK 761

Query:   549 L---IGHIPPQI--GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 603
             +     H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N L+G IP 
Sbjct:   762 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPK 821

Query:   604 QLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMP-E 662
              +  ++ +E F +++N L G IP    +  + +      N  L G+ +P  R   T   E
Sbjct:   822 SISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNN-LSGV-IPQGRQFNTFDAE 879

Query:   663 ASIGN 667
             +  GN
Sbjct:   880 SYFGN 884

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 5.3e-57, P = 5.3e-57
 Identities = 193/659 (29%), Positives = 313/659 (47%)

Query:     1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
             ++SC + G + SQ L  LV +Q L +  N L G +P  + N + L +   + N L G+I 
Sbjct:   174 LASCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIP 232

Query:    61 SSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
             +  L  L ++E L L+NN    +IP  L  +   S+L+  +   N+++  I +S   +A 
Sbjct:   233 AE-LGRLENLEILNLANNSLTGEIPSQLGEM---SQLQYLSLMANQLQGLIPKS---LAD 285

Query:   119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
                L TL LS+N   G I P+  ++   L  + L++  ++G  P  +  NNT LE L L 
Sbjct:   286 LGNLQTLDLSANNLTGEI-PEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLS 344

Query:   179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSM-------- 228
                L+G   + +   + L+QLD+SNN++ G IP  + ++  L  LY+ NN++        
Sbjct:   345 GTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSI 404

Query:   229 -------------NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275
                          N L+G +P     ++ L++L L  N  +GEIP+ +   C +L+ + +
Sbjct:   405 SNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIG-NCTSLKMIDM 463

Query:   276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
               N+ +G +      L  L  L L  N  VG +P SL  C  L  L L +N L G IP  
Sbjct:   464 FGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSS 523

Query:   336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
              G L  L+ +++ NN L+G +P     L +L  +++S N ++G++    HPL     +LS
Sbjct:   524 FGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI----HPLCGSSSYLS 579

Query:   396 KNMLHGQLKRGT---FFNCSSLVTLDLSYNRLNGSIPDWVDG-LSQLSHLILGHNNLEGE 451
              ++ +   +        N  +L  L L  N+L G IP W  G + +LS L +  N L G 
Sbjct:   580 FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIP-WTLGKIRELSLLDMSSNALTGT 638

Query:   452 VSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTT-LHESYSNSSSPDEQF--EIFFSIEGH 508
             + +                   GPIPP     + L E   +S+   E    E+F   +  
Sbjct:   639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTK-- 696

Query:   509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 568
                L    + +     + I     G  L  L+ L+L  N+  G +P  +G L+++  L L
Sbjct:   697 LLVLSLDGNSLNGSIPQEI-----GN-LGALNVLNLDKNQFSGSLPQAMGKLSKLYELRL 750

Query:   569 SHNNLTGSIPSTFSNLKHVES-LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
             S N+LTG IP     L+ ++S LDLS N   G IP  +  L  LE   +++N L+GE+P
Sbjct:   751 SRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 7.1e-64, P = 7.1e-64
 Identities = 206/665 (30%), Positives = 304/665 (45%)

Query:    15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
             +C    L  +    N+L G +P C+ ++  L++   + N LTGSI  S +  L ++ +L 
Sbjct:   164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLD 222

Query:    75 LSNNYF--QIPISLEPLFNYSRLKIF-NAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
             LS N    +IP     L N   L +  N    +I AEI    SL+        L L  N 
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQ-------LELYDNQ 275

Query:   132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH 191
               G I P  L +   L+ + +   K+    P+ L    T+L  L L  + L GP    I 
Sbjct:   276 LTGKI-PAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIG 333

Query:   192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 251
               + L  L + +NN  G  P  I + L +L V     N + G +P+  G +  L+ L   
Sbjct:   334 FLESLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAH 392

Query:   252 NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311
             +N LTG IP  ++  C  L+ L LS+N + G +  R F   NL ++ +  N F GEIP  
Sbjct:   393 DNLLTGPIPSSIS-NCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDD 450

Query:   312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371
             +  CS+LE L + +N+L G +   +G L +L+ + +  N L GPIP E   L  L IL +
Sbjct:   451 IFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYL 510

Query:   372 SDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
               N  +G +P     L++ Q + +  N L G +     F+   L  LDLS N+ +G IP 
Sbjct:   511 HSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPA 569

Query:   431 WVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIP----PCFDNTTLH 486
                 L  L++L L  N   G +                     G IP        N  L+
Sbjct:   570 LFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLY 629

Query:   487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG----- 541
              ++SN+        +  +I    G LE     + E    N   ++ G +   L       
Sbjct:   630 LNFSNNL-------LTGTIPKELGKLEM----VQEIDLSN--NLFSGSIPRSLQACKNVF 676

Query:   542 -LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
              LD S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS+N L G
Sbjct:   677 TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTG 736

Query:   600 KIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPAT 659
             +IP  L  L TL+   +A NNL G +PE    F   N S   GNT LCG   P+   P T
Sbjct:   737 EIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KPCT 793

Query:   660 MPEAS 664
             + + S
Sbjct:   794 IKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 8.1e-64, P = 8.1e-64
 Identities = 209/676 (30%), Positives = 321/676 (47%)

Query:     2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSIS 60
             S C+ +GV      C    + E+ ++ + L G + +    ++ SL +L +S N    + +
Sbjct:    66 SPCQFSGVT-----CLGGRVTEINLSGSGLSGIVSFNAFTSLDSLSVLKLSENFFVLNST 120

Query:    61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFN-YSRLKIFNAENNEIKAEITESHSLIAPK 119
             S  L+ LT +  L LS++   I    E  F+ YS L       N    ++     L + K
Sbjct:   121 SLLLLPLT-LTHLELSSSGL-IGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKK 178

Query:   120 FQLNTLSLSSNYG--DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL 177
              Q   LS ++  G   G   P  L     + Y+D S   ++G   + L+ N T L++L L
Sbjct:   179 LQTLDLSYNNITGPISGLTIP--LSSCVSMTYLDFSGNSISGYISDSLI-NCTNLKSLNL 235

Query:   178 VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237
               ++  G         K L+ LD+S+N + G IP +IGD   SL     S N   G IP 
Sbjct:   236 SYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPE 295

Query:   238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
             S  +  +LQ LDLSNN+++G  P  +     +LQ L LSNN + G   +      +L+  
Sbjct:   296 SLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIA 355

Query:   298 QLEGNRFVGEIPQSLSK-CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
                 NRF G IP  L    +SLE L L +N + G+IP  +   + L+ I +  N+L G I
Sbjct:   356 DFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTI 415

Query:   357 PVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
             P E   L  L+      NNI+G +P     L ++K + L+ N L G++    FFNCS++ 
Sbjct:   416 PPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP-EFFNCSNIE 474

Query:   416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGP 475
              +  + NRL G +P     LS+L+ L LG+NN  GE+                     G 
Sbjct:   475 WVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGE 534

Query:   476 IPPCFDNTTLHESYSNSSSPDEQ-F--EIFFSIEGHQGFLE------KQNHEIFEFTTKN 526
             IPP        ++ S   S +   F   +  S +G  G +E      ++  +I    + +
Sbjct:   535 IPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCD 594

Query:   527 IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPST 580
                +Y G +LSL +       LDLS N+L G IP +IG +  +Q L LSHN L+G IP T
Sbjct:   595 FTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFT 654

Query:   581 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSY 640
                LK++   D S+N+L G+IP     L  L    ++ N L+G IP+ + Q +T   + Y
Sbjct:   655 IGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQY 713

Query:   641 EGNTFLCGLPLPICRS 656
               N  LCG+PLP C++
Sbjct:   714 ANNPGLCGVPLPECKN 729

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	717
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  226 bits (577), Expect = 7e-63
 Identities = 191/621 (30%), Positives = 293/621 (47%), Gaps = 73/621 (11%)

Query: 41  NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 100
           N + +  +D+S   ++G ISS+ +  L  I+ + LSNN    PI  +     S L+  N 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 101 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 160
            NN     I            L TL LS+N   G I P  +     L+ +DL    + G+
Sbjct: 126 SNNNFTGSIPRGSI-----PNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGK 179

Query: 161 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 220
            PN L  N T LE L L ++ L G     +   K L+ + +  NN+ G IP +IG  L S
Sbjct: 180 IPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTS 237

Query: 221 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 280
           L   +   N L G IPSS GN+K LQ L L  N L+G IP  +                 
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----------------- 280

Query: 281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
                   F+L  L  L L  N   GEIP+ + +  +LE L+L +N+  GKIP  L +L 
Sbjct: 281 --------FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNM 398
           RLQ + + +N   G IP    + ++L +LD+S NN++G +P   C      K +  S N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NS 391

Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 458
           L G++ + +   C SL  + L  N  +G +P     L  +  L + +NNL+G ++ +  +
Sbjct: 392 LEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 459 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 518
           +  LQ+L L+ N   G +P  F +  L                          L+   ++
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLEN------------------------LDLSRNQ 486

Query: 519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 578
                 + +        LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP
Sbjct: 487 FSGAVPRKLG------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 579 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES 638
           ++FS +  +  LDLS N+L+G+IP  L  +++L   ++++N+L G +P   A F   N S
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINAS 599

Query: 639 SYEGNTFLCG----LPLPICR 655
           +  GN  LCG      LP C+
Sbjct: 600 AVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  203 bits (519), Expect = 4e-55
 Identities = 157/487 (32%), Positives = 244/487 (50%), Gaps = 39/487 (8%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMT-SLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           L ++Q + +++N L G +P  +   + SLR L++S+N  TGSI    + +L   E L LS
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL---ETLDLS 148

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
           NN     I  + + ++S LK+ +   N +  +I  S   +     L  L+L+SN   G I
Sbjct: 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFLTLASNQLVGQI 204

Query: 137 FPKFLYHQHDLEYVDLSHIKMNGEFPNWL-----------------------LENNTKLE 173
            P+ L     L+++ L +  ++GE P  +                       L N   L+
Sbjct: 205 -PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 174 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNAL 231
            LFL  + L+GP    I S ++L  LD+S+N++ G IP  +  +  L  L++F+N+    
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN---F 320

Query: 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL 291
            G IP +  ++  LQ+L L +N  +GEIP++L     NL  L LS NNL G +     + 
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSS 379

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
            NL  L L  N   GEIP+SL  C SL  + L +NS  G++P     L  + ++ + NN+
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 411
           L+G I      + SLQ+L ++ N   G LP  F    ++ + LS+N   G + R    + 
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSL 498

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
           S L+ L LS N+L+G IPD +    +L  L L HN L G++     E+  L  LDLS N 
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 472 LHGPIPP 478
           L G IP 
Sbjct: 559 LSGEIPK 565

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  165 bits (420), Expect = 1e-42
 Identities = 144/421 (34%), Positives = 217/421 (51%), Gaps = 22/421 (5%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L +L  L+ L +ASN L G +P  +  M SL+ + +  N L+G I    +  LTS+  L 
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLD 242

Query: 75  LSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 132
           L  N     IP SL  L N   L ++    N++   I  S   I    +L +L LS N  
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLY---QNKLSGPIPPS---IFSLQKLISLDLSDNSL 296

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
            G I P+ +    +LE + L      G+ P   L +  +L+ L L ++  +G     +  
Sbjct: 297 SGEI-PELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
           H  L  LD+S NN+ G IP  +     L  L +F+NS   L+G IP S G  + L+ + L
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS---LEGEIPKSLGACRSLRRVRL 411

Query: 251 SNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309
            +N  +GE+P E   +  V   FL +SNNNLQG + SR +++ +LQ L L  N+F G +P
Sbjct: 412 QDNSFSGELPSEFTKLPLVY--FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 369
            S      LE L L+ N   G +PR LG+L+ L  + +  N L G IP E      L  L
Sbjct: 470 DS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 370 DISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
           D+S N +SG +P+ F  + +  Q+ LS+N L G++ +    N  SLV +++S+N L+GS+
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-NLGNVESLVQVNISHNHLHGSL 587

Query: 429 P 429
           P
Sbjct: 588 P 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (374), Expect = 9e-37
 Identities = 118/383 (30%), Positives = 173/383 (45%), Gaps = 61/383 (15%)

Query: 250 LSNNHLTGEIPEHLAVGCVN---LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 306
           LSN + + ++     + C N   +  + LS  N+ G + S  F L  +Q + L  N+  G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 307 EIPQSLSK-CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 365
            IP  +    SSL  L L+NN+  G IPR  G++  L+ + + NN L G IP +     S
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 366 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           L++LD+  N + G +P                         +  N +SL  L L+ N+L 
Sbjct: 166 LKVLDLGGNVLVGKIP------------------------NSLTNLTSLEFLTLASNQLV 201

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 485
           G IP  +  +  L  + LG+NNL GE+  ++  L  L  LDL  NNL GPIP    N   
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK- 260

Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQ-NHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                     + Q+   +     Q  L       IF                  L  LDL
Sbjct: 261 ----------NLQYLFLY-----QNKLSGPIPPSIFSLQK--------------LISLDL 291

Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
           S N L G IP  +  L  ++ L+L  NN TG IP   ++L  ++ L L +NK +G+IP  
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Query: 605 LVELKTLEVFSVAYNNLSGEIPE 627
           L +   L V  ++ NNL+GEIPE
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  141 bits (357), Expect = 1e-34
 Identities = 125/402 (31%), Positives = 193/402 (48%), Gaps = 36/402 (8%)

Query: 21  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
           L+ +Y+  N+L G +P+ +  +TSL  LD+  N LTG I SS L +L +++ L L  N  
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL 272

Query: 81  --QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI-- 136
              IP S+   F+  +L   +  +N +  EI E   L+     L  L L SN   G I  
Sbjct: 273 SGPIPPSI---FSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNNFTGKIPV 326

Query: 137 ---------------------FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                                 PK L   ++L  +DLS   + GE P  L  ++  L  L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKL 385

Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
            L ++SL G     + + + LR++ + +N+  G +P +    LP +Y  + S N L G I
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRI 444

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
            S   +M  LQ+L L+ N   G +P+  + G   L+ L LS N   G +  +  +L+ L 
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355
            L+L  N+  GEIP  LS C  L  L L++N L G+IP     +  L  + +  N L G 
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
           IP     ++SL  ++IS N++ GSLPS    L+I    ++ N
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 2e-34
 Identities = 110/355 (30%), Positives = 168/355 (47%), Gaps = 71/355 (20%)

Query: 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
           S N+   +L + N +     W  +  N          S+  S++   L+  ++ GKI   
Sbjct: 40  SINDPLKYLSNWNSSADVCLWQGITCNNS--------SRVVSID---LSGKNISGKISSA 88

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHL 394
           +  L  +Q I + NN L GPIP + F    SL+ L++S+NN +GS+P    P  ++ + L
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN-LETLDL 147

Query: 395 SKNMLHGQLKR--GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
           S NML G++    G+F   SSL  LDL  N L G IP+ +  L+ L  L L  N L G++
Sbjct: 148 SNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 512
             +L ++  L+ + L  NNL G                         EI + I G     
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSG-------------------------EIPYEIGG----- 234

Query: 513 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 572
                                  L+ L+ LDL  N L G IP  +GNL  +Q L L  N 
Sbjct: 235 -----------------------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 573 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           L+G IP +  +L+ + SLDLS+N L+G+IP  +++L+ LE+  +  NN +G+IP 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 1e-16
 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 27/175 (15%)

Query: 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
            + GL L    L G IP  I  L  +Q++NLS N++ G+IP +  ++  +E LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKA----QFATFNESSYEGNTFLCGLP-LP 652
           NG IP  L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 653 ICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRR 707
            C  P     A IG              I F  S       + +V+    +W+RR
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAF----LFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.2 bits (190), Expect = 2e-14
 Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 42/274 (15%)

Query: 13  QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSS----PLVHLT 68
           +GLCS  +L +L + SN L G +P  +    SLR + +  N  +G + S     PLV+  
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF- 432

Query: 69  SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 128
               L +SNN  Q  I                  N  K ++            L  LSL+
Sbjct: 433 ----LDISNNNLQGRI------------------NSRKWDMP----------SLQMLSLA 460

Query: 129 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 188
            N   G + P   +    LE +DLS  + +G  P  L  + ++L  L L  + L+G    
Sbjct: 461 RNKFFGGL-PDS-FGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPD 517

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
            + S K+L  LD+S+N + G IP    + +P L   + S N L G IP + GN++ L  +
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
           ++S+NHL G +P   A   +N   +A  N +L G
Sbjct: 577 NISHNHLHGSLPSTGAFLAINASAVA-GNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 7e-12
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 175 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS 234
           L L N  L G     I   + L+ +++S N+IRG+IP  +G +  SL V + S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 29/151 (19%)

Query: 260 PEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319
            +H   G  + QF     ++ +G  F     L N      +G R  G IP  +SK   L+
Sbjct: 400 QQHPWSG-ADCQF-----DSTKGKWFIDGLGLDN------QGLR--GFIPNDISKLRHLQ 445

Query: 320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 379
            + L+ NS+ G IP  LG++T L+ + +  N   G IP    QL SL+IL+++ N++SG 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 380 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 410
           +P+                L G+L     FN
Sbjct: 506 VPAA---------------LGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 26/114 (22%)

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
           L + N  +RG IP  I   L  L   N S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
           IPE L                           LT+L+ L L GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 24/104 (23%)

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
           N  L G IP +  +L  LQ +++S N+I G++P                         + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SL 462

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
            + +SL  LDLSYN  NGSIP+ +  L+ L  L L  N+L G V
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query: 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
           ++GL L+N  L G IP  +  L  LQ I +  N + G IP     + SL++LD+S N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 378 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 435
           GS+P                   GQL        +SL  L+L+ N L+G +P  + G 
Sbjct: 480 GSIPESL----------------GQL--------TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           L HLQ + ++ N +RG++P  + ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 78  NYF--QIPISL--EPLFNYSRLKIFNAENN 103
           N    ++P +L    L        FN  +N
Sbjct: 500 NSLSGRVPAALGGRLL----HRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 542 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
           LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 60/165 (36%)

Query: 432 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 491
           +DGL       L +  L G +   + +L  LQ ++LS N++ G IPP   +         
Sbjct: 420 IDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------- 464

Query: 492 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 551
                                                       ++ L  LDLS N   G
Sbjct: 465 --------------------------------------------ITSLEVLDLSYNSFNG 480

Query: 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTF-SNLKHVESLDLSNN 595
            IP  +G LT ++ LNL+ N+L+G +P+     L H  S + ++N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT-RLQYIIMP 348
           NL  L  L L  NR    I   L + ++L  L L+NN++   IP  +G L   L+ + + 
Sbjct: 91  NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
           +N +E  +P     L +L+ LD+S N++S       +  ++  + LS N +         
Sbjct: 149 DNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--SDLPPEI 205

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468
              S+L  LDLS N +   +   +  L  LS L L +N LE      +  L+ L+ LDLS
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLS 263

Query: 469 NNNL 472
           NN +
Sbjct: 264 NNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 392 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
           + LS N L   +  G F    +L  LDLS N L    P+   GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 14/222 (6%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYV 223
           L   T L +L L N+++     L       L++LD+S+N I   +P  + ++  L +L +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 283
             N ++     +P    N+  L  LDLS N ++ ++P  + +    L+ L LSNN++   
Sbjct: 171 SFNDLS----DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSIIEL 224

Query: 284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
           L S + NL NL  L+L  N+   ++P+S+   S+LE L L+NN         LG+LT L+
Sbjct: 225 LSSLS-NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLR 280

Query: 344 YIIMPNNHLEGPIPVEF-CQLDSLQILDISDNNISGSLPSCF 384
            + +  N L   +P+     L    +L++     +  L    
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 57/227 (25%)

Query: 12  SQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 71
                 L  +  L I++N+L+G +     +M SL++L ++ N+  G +  S       +E
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS--FGSKRLE 478

Query: 72  ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
            L LS N F   +  + L + S L       N++  EI                      
Sbjct: 479 NLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEI---------------------- 515

Query: 132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH 191
                 P  L     L  +DLSH +++G+ P    E                    +P+ 
Sbjct: 516 ------PDELSSCKKLVSLDLSHNQLSGQIPASFSE--------------------MPV- 548

Query: 192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS 238
               L QLD+S N + G IP  +G+V  SL   N S N L GS+PS+
Sbjct: 549 ----LSQLDLSQNQLSGEIPKNLGNV-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 621
            +++L+LS+N LT      F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 28/60 (46%)

Query: 413 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 472
           +L +LDLS NRL         GL  L  L L  NNL          L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
           NL+ L L  NR       +     +L+ L L+ N+L    P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
           L +++LS N + G+IP  +  ++ L  L L +N+  G +   L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 474 GPIPPCFDNTTLHESYSN 491
           G +P       LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
           L L    L G IP+ +  L  L  + L  N++ G +   L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 477 P 477
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 44/217 (20%)

Query: 245 LQILDLSNNHLTGEIPEHLAV------GCVNLQFLALSNNNLQGHL------FSRNFNLT 292
           L+ L LS N  TG IP  L            LQ L LS+N L            R+ +L 
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 293 NLQWLQ----LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL----TRLQY 344
            L+         G R + +  + L    +LE L L  N L G     L         L+ 
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLP--PALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 345 IIMPNNHLEGP----IPVEFCQLDSLQILDISDNNI----SGSLPSCF-HPLSIKQVHLS 395
           + + NN +       +        +L++LD+++N +    + +L        S++ ++L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 396 KNM--------LHGQLKRGTFFNCSSLVTLDLSYNRL 424
            N         L   L         SL+TL LS N +
Sbjct: 230 DNNLTDAGAAALASALLSPN----ISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEG 301
           L+ LDLSNN LT  IP+    G  NL+ L LS NNL       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 302 NRF 304
           N  
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 376
           +L+ L L+NN L          L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
           SL + NN +  +      +F  +  L++LDLS N+LT  I      G  +L+ L LS NN
Sbjct: 4   SLDLSNNRLTVIP---DGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 280 L 280
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 32/184 (17%)

Query: 303 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR---LQYIIMPNNHLEGPIPVE 359
           R +  + Q L+K   L+ L L++N+L       L +L R   LQ + + NN L       
Sbjct: 68  RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD----- 122

Query: 360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVT 416
                  + L +    ++  L      L  +++ L +N L G               L  
Sbjct: 123 -------RGLRL----LAKGLKDLPPAL--EKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 417 LDLSYNRLNGS-IPDWVDGL---SQLSHLILGHNNLEGEVSVQLCE----LNQLQLLDLS 468
           L+L+ N +  + I    +GL     L  L L +N L  E +  L E    L  L++L+L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 469 NNNL 472
           +NNL
Sbjct: 230 DNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 60/284 (21%), Positives = 93/284 (32%), Gaps = 98/284 (34%)

Query: 366 LQILDISDNNIS----GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
           LQ LD+SDN +     G L S     S++++ L+ N L     RG       L  L  + 
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG---DRGLRLLAKGLKDLPPA- 138

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ----LQLLDLSNNNLHGPIP 477
                           L  L+LG N LEG     L +  +    L+ L+L+NN +     
Sbjct: 139 ----------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI----- 177

Query: 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG-KVL 536
                                        G  G                I  + +G K  
Sbjct: 178 -----------------------------GDAG----------------IRALAEGLKAN 192

Query: 537 SLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN-----L 584
             L  LDL+ N L       +      + +L   + LNL  NNLT +  +  ++      
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSL---EVLNLGDNNLTDAGAAALASALLSPN 249

Query: 585 KHVESLDLSNNKLNGKIPHQLVEL----KTLEVFSVAYNNLSGE 624
             + +L LS N +       L E+    ++L    +  N    E
Sbjct: 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 269 NLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
           NL+ L LSNN L   +    F  L NL+ L L GN      P++ S   SL  L L+ N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 328 L 328
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	717
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
PLN03150	623	hypothetical protein; Provisional	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.03
KOG4341	483	consensus F-box protein containing LRR [General fu	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG4341	483	consensus F-box protein containing LRR [General fu	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.47
PRK15386	426	type III secretion protein GogB; Provisional	97.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.76
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.59
smart00370	26	LRR Leucine-rich repeats, outliers.	92.59
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.94
smart00370	26	LRR Leucine-rich repeats, outliers.	90.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.4
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	90.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.32
KOG4308	478	consensus LRR-containing protein [Function unknown	87.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.16
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.98
KOG4308	478	consensus LRR-containing protein [Function unknown	80.87
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.36

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-62  Score=575.79  Aligned_cols=542  Identities=32%  Similarity=0.488  Sum_probs=431.5

Q ss_pred             CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEE
Q 005038           19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF   98 (717)
Q Consensus        19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L   98 (717)
                      .+++.|+|++|.+++..+..|..+++|++|+|++|++.+.+|...+.++++|++|++++|.+++.++.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            46777777777777666777777777777777777776666664555677777777777766654442   335556666


Q ss_pred             EccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEcc
Q 005038           99 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV  178 (717)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  178 (717)
                      ++++|.+.                            +.+|..++.+++|++|++++|.+.+.+|..+ .++++|++|+++
T Consensus       146 ~Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~  196 (968)
T PLN00113        146 DLSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLA  196 (968)
T ss_pred             ECcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeecc
Confidence            65555443                            3456666677777777777777776666664 667777777777


Q ss_pred             CCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccc
Q 005038          179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE  258 (717)
Q Consensus       179 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  258 (717)
                      +|.+.+..|..++.+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            77777777777777777777777777777666666544 67777777777777777777777788888888888877766


Q ss_pred             cchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCC
Q 005038          259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN  338 (717)
Q Consensus       259 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  338 (717)
                      +|..+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..
T Consensus       276 ~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        276 IPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             CchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            776665 4777888888888777777777777788888888888877777777777888888888888877777777777


Q ss_pred             CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEE
Q 005038          339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  417 (717)
Q Consensus       339 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  417 (717)
                      +++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. +++|+.|++++|.+.+.++.. |..++.|+.|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L  433 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFL  433 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEE
Confidence            78888888888887777777777777888888888887776666544 667888888888877766655 8889999999


Q ss_pred             eCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCc
Q 005038          418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE  497 (717)
Q Consensus       418 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  497 (717)
                      ++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+              
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l--------------  498 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL--------------  498 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh--------------
Confidence            999999999999888899999999999999998887765 56899999999999998888766543              


Q ss_pred             chhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCC
Q 005038          498 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI  577 (717)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  577 (717)
                                                             ++|+.|++++|++.+.+|..+..+++|++|+|++|.+++.+
T Consensus       499 ---------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        499 ---------------------------------------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             ---------------------------------------hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                                                   37999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          578 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       578 p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      |..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. +++.++....+.|||.+|+.+
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999985 678889999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-57  Score=535.70  Aligned_cols=521  Identities=33%  Similarity=0.510  Sum_probs=475.7

Q ss_pred             CCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCcc
Q 005038           42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ  121 (717)
Q Consensus        42 l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  121 (717)
                      ..+++.|||++|.+.+.++. .+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..+           
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----------  135 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-----------  135 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-----------
Confidence            35799999999999987776 889999999999999999887887666688999999998887753221           


Q ss_pred             ccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEc
Q 005038          122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV  201 (717)
Q Consensus       122 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  201 (717)
                                       .  ..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++
T Consensus       136 -----------------~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        136 -----------------R--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             -----------------c--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence                             1  235789999999999998888875 78999999999999999999999999999999999


Q ss_pred             cCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC
Q 005038          202 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ  281 (717)
Q Consensus       202 s~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~  281 (717)
                      ++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus       196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence            999999888877765 78999999999999999999999999999999999999988887765 6999999999999999


Q ss_pred             ccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccC
Q 005038          282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC  361 (717)
Q Consensus       282 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  361 (717)
                      +..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcE
Q 005038          362 QLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH  440 (717)
Q Consensus       362 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  440 (717)
                      .+++|+.|++++|++.+..|..+. ..+++.+++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  432 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF  432 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence            999999999999999988877665 678999999999998887765 889999999999999999999999999999999


Q ss_pred             EEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceE
Q 005038          441 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF  520 (717)
Q Consensus       441 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (717)
                      |++++|++++..+..+..+++|+.|++++|++.+..|..+.                                       
T Consensus       433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---------------------------------------  473 (968)
T PLN00113        433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG---------------------------------------  473 (968)
T ss_pred             EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------------------------
Confidence            99999999999998889999999999999999877775432                                       


Q ss_pred             EEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038          521 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK  600 (717)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~  600 (717)
                                     .++|+.|++++|++.+..|..+.++++|++|+|++|.+.+.+|+.+.++++|++|+|++|.+++.
T Consensus       474 ---------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  538 (968)
T PLN00113        474 ---------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ  538 (968)
T ss_pred             ---------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence                           13699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCC
Q 005038          601 IPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  651 (717)
Q Consensus       601 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l  651 (717)
                      +|..+..+++|+.|++++|++++.+|..+..+..++.+.+.+|+..+..|.
T Consensus       539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            999999999999999999999999999988999999999999998876653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-43  Score=348.11  Aligned_cols=372  Identities=25%  Similarity=0.307  Sum_probs=257.6

Q ss_pred             CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038          218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  297 (717)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  297 (717)
                      +++|+.+++..|.++ .+|.......+|+.|+|.+|.|+ .+.......++.|+.||||.|.|+.+....|..-.++++|
T Consensus       101 l~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L  178 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL  178 (873)
T ss_pred             CCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence            444444444444443 33333333334445555555444 3333333334445555555554444433444444445555


Q ss_pred             ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038          298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      +|++|+|+....+.|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++....--.|.++++|+.|.+..|.+.
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~  258 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS  258 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence            55555555444444555555555555555554333344444555555555555544322334445555555555444443


Q ss_pred             ccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038          378 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC  457 (717)
Q Consensus       378 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  457 (717)
                                              .+..++|..+.++++|+|+.|++...-.+|+-++++|+.|+++.|.|..+.+..+.
T Consensus       259 ------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  259 ------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             ------------------------cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence                                    45667799999999999999999988888999999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038          458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  537 (717)
Q Consensus       458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  537 (717)
                      ..++|++|+|++|+|+...+.+|..+.                                                     
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------  341 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------  341 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHH-----------------------------------------------------
Confidence            999999999999999887777765543                                                     


Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc---CCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEE
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  614 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L  614 (717)
                      .|++|+|++|.+...-...|..+++|++|||++|.++..+.+   .|.++++|++|++.+|++..+.-.+|.++.+|+.|
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence            799999999999877777899999999999999999876654   47889999999999999996666799999999999


Q ss_pred             eccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC-----------------CCCCCCCCCCCCCCCCC
Q 005038          615 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPATMPEASIGNEQ  669 (717)
Q Consensus       615 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~-----------------~C~~~~~~~~~~~~~~~  669 (717)
                      ||.+|.|...-|..|..+ .++++.+..-.++|+|.+.                 +|.+|+...++.+...+
T Consensus       422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd  492 (873)
T KOG4194|consen  422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVD  492 (873)
T ss_pred             cCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeec
Confidence            999999998888888888 8888888888999999763                 39999988776554433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-40  Score=328.67  Aligned_cols=373  Identities=24%  Similarity=0.260  Sum_probs=264.6

Q ss_pred             CCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEc
Q 005038          171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL  250 (717)
Q Consensus       171 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  250 (717)
                      .-+.|++++|.+....+..|.++++|+++.+..|.++ .+|.... ....++.|++.+|.|+..-.+++..++.|++|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            4577999999998888888889999999999999987 7775443 3567999999999998888888999999999999


Q ss_pred             cCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcC
Q 005038          251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG  330 (717)
Q Consensus       251 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  330 (717)
                      |.|.|+ ++|...+..-.++++|+|++|+|+......|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|++.-
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            999998 8888777666889999999999998888999999999999999999997777888889999999999999874


Q ss_pred             cCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccccC
Q 005038          331 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFF  409 (717)
Q Consensus       331 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~  409 (717)
                      .---.|.++++|+.|.+..|.+.......|..+.++++|+++.|++......+. ...+|+.|+++.|.+.. +....+.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Ws  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWS  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhh
Confidence            435678999999999999999998888889999999999999999875544432 24445555555554422 2222244


Q ss_pred             CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038          410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  489 (717)
Q Consensus       410 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  489 (717)
                      -+++|++|+|++|+++...++.|..+..|++|+|++|.++......|..+.+|++|||++|.++..+.+           
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-----------  383 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----------  383 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----------
Confidence            445555555555555544444555555555555555555544444444555555555555544332211           


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCC
Q 005038          490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  569 (717)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  569 (717)
                                                                                     ....|.++++|+.|++.
T Consensus       384 ---------------------------------------------------------------aa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  384 ---------------------------------------------------------------AAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             ---------------------------------------------------------------chhhhccchhhhheeec
Confidence                                                                           12235556666666666


Q ss_pred             CcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038          570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       570 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      +|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|-+..-.+.
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL  452 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence            666664444556666666666666666665556666555 5555555444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-40  Score=312.57  Aligned_cols=495  Identities=26%  Similarity=0.366  Sum_probs=279.7

Q ss_pred             cCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCC
Q 005038           16 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL   95 (717)
Q Consensus        16 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L   95 (717)
                      ..-.-++.|++++|.+. .+-+.+.++..|.+|++++|++. ++|+ +++.+..++.++.++|.+. ..| ..+..+.+|
T Consensus        42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l  116 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELP-EQIGSLISL  116 (565)
T ss_pred             hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hcc-HHHhhhhhh
Confidence            33345566666666666 33445566666666666666666 5665 5666666666666666655 233 344555556


Q ss_pred             CEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEE
Q 005038           96 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL  175 (717)
Q Consensus        96 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  175 (717)
                      +.+++++|.+.                             ..+..++.+..++.++..+|+++ ..|..+ .++.++..+
T Consensus       117 ~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l  165 (565)
T KOG0472|consen  117 VKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKL  165 (565)
T ss_pred             hhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHh
Confidence            66665555443                             23445555556666666666665 455543 455555555


Q ss_pred             EccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCcc
Q 005038          176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL  255 (717)
Q Consensus       176 ~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l  255 (717)
                      ++.+|++....+..+. ++.|++||...|-++ .+|..++. +.+|..|++..|++. .+| .|..+..|..+.++.|.|
T Consensus       166 ~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI  240 (565)
T ss_pred             hccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH
Confidence            5555555544433333 555666666555554 55555544 445555555555554 334 455555555555555555


Q ss_pred             ccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcc
Q 005038          256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW  335 (717)
Q Consensus       256 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  335 (717)
                      . .+|+.....+.++..||+..|+++ ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|++...-.+.
T Consensus       241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence            5 555555555555555555555554 34455555555555555555555 334445555 5555555555543111110


Q ss_pred             cCCC--CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCC-
Q 005038          336 LGNL--TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS-  412 (717)
Q Consensus       336 ~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-  412 (717)
                      +..-  .-|++|.=   .++   .+.+..-..=+.=  ......+..+......+.+.|++++-++ ..+|...|.... 
T Consensus       317 i~~gT~~vLKyLrs---~~~---~dglS~se~~~e~--~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~  387 (565)
T KOG0472|consen  317 ISKGTQEVLKYLRS---KIK---DDGLSQSEGGTET--AMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKS  387 (565)
T ss_pred             HcccHHHHHHHHHH---hhc---cCCCCCCcccccc--cCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhh
Confidence            0000  00110000   000   0000000000000  0000111222223344555555555555 245555454322 


Q ss_pred             -cCCEEeCCCCcCCcccchhhhCCCCCcE-EEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038          413 -SLVTLDLSYNRLNGSIPDWVDGLSQLSH-LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  490 (717)
Q Consensus       413 -~L~~L~L~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  490 (717)
                       -....+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.+. .+|..+..+       
T Consensus       388 ~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-------  457 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL-------  457 (565)
T ss_pred             cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh-------
Confidence             2667888888887 45665655555443 445555554 77888888888888888888765 334333322       


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038          491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  570 (717)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  570 (717)
                                                                    ..|+.||+++|++. ..|.++..+..++.+-.++
T Consensus       458 ----------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~  490 (565)
T KOG0472|consen  458 ----------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASN  490 (565)
T ss_pred             ----------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence                                                          25888888888887 6788877777888888888


Q ss_pred             cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038          571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      |++..+.|+.+.++.+|..|||.+|.+. .+|..++++++|++|+++||++.
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888777777888888999999988887 67778888999999999999888

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-39  Score=308.61  Aligned_cols=486  Identities=26%  Similarity=0.376  Sum_probs=330.3

Q ss_pred             CCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCcccc
Q 005038           44 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN  123 (717)
Q Consensus        44 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~  123 (717)
                      .|+.|++++|.+. .+.+ .+.++..|.+|++++|++. ..| .+++.+..++.++.+.|++.                 
T Consensus        46 ~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-----------------  104 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-----------------  104 (565)
T ss_pred             chhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-----------------
Confidence            4555555555554 3332 3555555555555555554 122 23444444444444444332                 


Q ss_pred             EEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccC
Q 005038          124 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN  203 (717)
Q Consensus       124 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~  203 (717)
                                  .+|..+....++..++.+.|.+. .+|+.+ +.+..++.++..+|++.. .|..+..+.+|..+++.+
T Consensus       105 ------------~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen  105 ------------ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             ------------hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccc
Confidence                        46777777888888888888887 566665 567788888888888774 466777788888888888


Q ss_pred             CcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCcc
Q 005038          204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH  283 (717)
Q Consensus       204 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~  283 (717)
                      |+++ ..|..... .+.|++++...|.+. .+|..++.+.+|..|++.+|++. .+| . |.+|..|+++.++.|.|.-.
T Consensus       170 n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~~l  243 (565)
T KOG0472|consen  170 NKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIEML  243 (565)
T ss_pred             cchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHHhh
Confidence            8887 55555555 677888888777766 66777888888888888888887 777 2 34688888888888888743


Q ss_pred             CcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCC
Q 005038          284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL  363 (717)
Q Consensus       284 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  363 (717)
                      ..+....++++..||+.+|+++ ..|+.+..+.+|+.||+++|.++ ..|..++++ .|+.|-+.+|.+..+-.+-+..-
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g  320 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG  320 (565)
T ss_pred             HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence            3344447788888888888887 66777777888888888888887 567777777 78888888877653211111110


Q ss_pred             C--CCCEEE--ccCCcCcccCCCccccccccEEeccCcccccccCcc---ccCCCCcCCEEeCCCCcCCcccchhhhCC-
Q 005038          364 D--SLQILD--ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG---TFFNCSSLVTLDLSYNRLNGSIPDWVDGL-  435 (717)
Q Consensus       364 ~--~L~~L~--l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~L~~n~~~~~~~~~~~~l-  435 (717)
                      +  -|++|.  +....++.. .+.    .-         -....+..   ......+.+.|++++-+++....+.|..- 
T Consensus       321 T~~vLKyLrs~~~~dglS~s-e~~----~e---------~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~  386 (565)
T KOG0472|consen  321 TQEVLKYLRSKIKDDGLSQS-EGG----TE---------TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK  386 (565)
T ss_pred             HHHHHHHHHHhhccCCCCCC-ccc----cc---------ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence            0  011110  001111100 000    00         00011111   12344677888888888885443444321 


Q ss_pred             -CCCcEEEcCCCccccccchhccCCCCCCE-EEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccc
Q 005038          436 -SQLSHLILGHNNLEGEVSVQLCELNQLQL-LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE  513 (717)
Q Consensus       436 -~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (717)
                       .-.+..+++.|++. ..|..+..+..+.+ +++++|.+ +.+|..+..                               
T Consensus       387 ~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~-------------------------------  433 (565)
T KOG0472|consen  387 SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQ-------------------------------  433 (565)
T ss_pred             hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHh-------------------------------
Confidence             23778888888888 56666666655543 44454444 344433332                               


Q ss_pred             ccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECC
Q 005038          514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS  593 (717)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  593 (717)
                                            ++.|+.|+|++|-+. .+|..++.+..||+|+|+.|++. .+|..+..+..++.+-.+
T Consensus       434 ----------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  434 ----------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS  489 (565)
T ss_pred             ----------------------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence                                  457999999999887 67889999999999999999999 889888888889999999


Q ss_pred             CCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCC
Q 005038          594 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFL  646 (717)
Q Consensus       594 ~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  646 (717)
                      +|++..+.|+.+.++.+|.+||+.+|.+. .+|..++.+++++.+.+.||||.
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999888888999999999999999999 66777899999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=309.70  Aligned_cols=502  Identities=25%  Similarity=0.330  Sum_probs=308.9

Q ss_pred             CCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccC
Q 005038            3 SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI   82 (717)
Q Consensus         3 ~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~   82 (717)
                      .+.+. .||. -+..-.+++.|+++.|-+-...-+.+.+.-+|+.||+|+|++. ..|. .+..+.+|+.|+++.|.+. 
T Consensus         7 ~~~l~-~ip~-~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~-   81 (1081)
T KOG0618|consen    7 DEQLE-LIPE-QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR-   81 (1081)
T ss_pred             cccCc-ccch-hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-
Confidence            33433 5553 2333344777777777655332344455555777777777776 6666 6667777777777777665 


Q ss_pred             cCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCC
Q 005038           83 PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP  162 (717)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  162 (717)
                      ..+ ....++.+|+++.|.+|.+.                             ..|..+..+++|++||++.|++. .+|
T Consensus        82 ~vp-~s~~~~~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~P  130 (1081)
T KOG0618|consen   82 SVP-SSCSNMRNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHFG-PIP  130 (1081)
T ss_pred             hCc-hhhhhhhcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhccC-CCc
Confidence            233 34556666666666665443                             35667777788888888888776 666


Q ss_pred             hhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCC
Q 005038          163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNM  242 (717)
Q Consensus       163 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  242 (717)
                      .-+ ..++.++.+..++|....    .++... ++++++..|.+.+.++.++.. +..  .+++++|.+.   -..+..+
T Consensus       131 l~i-~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~  198 (1081)
T KOG0618|consen  131 LVI-EVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNL  198 (1081)
T ss_pred             hhH-HhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhc
Confidence            655 566777777777772211    122222 677777777777666666543 222  5788888776   1235677


Q ss_pred             CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEE
Q 005038          243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY  322 (717)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  322 (717)
                      ++|+.+....|++. .+.    ..-++++.|+.++|.+....+.  ..-.+|++++++.|++. .+|+++..+.+|+.++
T Consensus       199 ~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~  270 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALN  270 (1081)
T ss_pred             cchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEec
Confidence            77888888888776 221    1246788888888887733222  23467888888888887 4568888888888888


Q ss_pred             ccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc--cccccEEeccCcccc
Q 005038          323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLH  400 (717)
Q Consensus       323 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~~~  400 (717)
                      ..+|.+. ..|..+...++|+.|.+..|.+. .+|....+.+.|++|++..|++....+..+.  ..+++.+..+.|++.
T Consensus       271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~  348 (1081)
T KOG0618|consen  271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS  348 (1081)
T ss_pred             ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence            8888886 56777777788888888888887 4566667788888888888887744443333  223555555555553


Q ss_pred             cccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccc
Q 005038          401 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF  480 (717)
Q Consensus       401 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  480 (717)
                      .. +...=...+.|+.|++.+|.+++..-..+.+++.|+.|+|++|++...+...+.++..|+.|++++|+++. +|.+.
T Consensus       349 ~l-p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tv  426 (1081)
T KOG0618|consen  349 TL-PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTV  426 (1081)
T ss_pred             cc-ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHH
Confidence            21 21111233556666666666666555556666666666666666665555556666666666666666652 22332


Q ss_pred             ccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCC
Q 005038          481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL  560 (717)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  560 (717)
                      ..+                                                     ..|++|...+|++. ..| .+..+
T Consensus       427 a~~-----------------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  427 ANL-----------------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             Hhh-----------------------------------------------------hhhHHHhhcCCcee-ech-hhhhc
Confidence            222                                                     24666666666665 444 56666


Q ss_pred             ccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCC
Q 005038          561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  619 (717)
Q Consensus       561 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N  619 (717)
                      +.|+.+|+|.|+++...-..-...++|++|||++|.-....-..|..++.+...++.-|
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            66666666666665332211122256666666666643333344445555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.3e-34  Score=296.62  Aligned_cols=486  Identities=24%  Similarity=0.300  Sum_probs=374.6

Q ss_pred             eeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCC
Q 005038           24 LYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN  103 (717)
Q Consensus        24 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n  103 (717)
                      +|++...+. .+|..+-.-..++.|+++.|.+. ..|...+.+.-+|+.||+++|++. ++|. .+..+.+|+.|+++.|
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRN   78 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchh
Confidence            566666666 55655555555888888888776 555545556666888888888775 3442 3555666666666666


Q ss_pred             cccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCc
Q 005038          104 EIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA  183 (717)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  183 (717)
                      .+.                             ..|....++.+|++++|.+|.+. ..|..+ ..+.+|+.|+++.|.+.
T Consensus        79 ~i~-----------------------------~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen   79 YIR-----------------------------SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             hHh-----------------------------hCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccC
Confidence            553                             23466678889999999999887 778776 78899999999999886


Q ss_pred             ccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhh
Q 005038          184 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL  263 (717)
Q Consensus       184 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  263 (717)
                       .+|..+..+..+..++.++|.-....+.      ...+.+++..|.+.+.++..+..+..  .|+|.+|.+. ...   
T Consensus       128 -~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---  194 (1081)
T KOG0618|consen  128 -PIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---  194 (1081)
T ss_pred             -CCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence             5677788888889999999822212221      13777888888888888888877777  7999999886 222   


Q ss_pred             hhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCC
Q 005038          264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ  343 (717)
Q Consensus       264 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  343 (717)
                      ...+.+|+.+....|.+.....    .-++|+.|+.++|.++...+.  ....+|++++++.|.+. .+|+++..+.+|+
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLE  267 (1081)
T ss_pred             hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccce
Confidence            2347889999999988874332    347899999999999854433  23468999999999998 5779999999999


Q ss_pred             EEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCc-CCEEeCCCC
Q 005038          344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS-LVTLDLSYN  422 (717)
Q Consensus       344 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~L~~n  422 (717)
                      .+....|.+. .+|..+...++|+.|.+..|.+....+..-...+|+.|++..|.+ ..++...|..... +..|+.+.|
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n  345 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSN  345 (1081)
T ss_pred             EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhc
Confidence            9999999996 677888889999999999999986666666688999999999999 4556554555444 788888888


Q ss_pred             cCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhh
Q 005038          423 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF  502 (717)
Q Consensus       423 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (717)
                      ++.......=..++.|+.|++.+|.++......+.+.+.|+.|+|++|.+...+..++.+                    
T Consensus       346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--------------------  405 (1081)
T KOG0618|consen  346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--------------------  405 (1081)
T ss_pred             cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc--------------------
Confidence            887432211223678999999999999888888999999999999999997655544444                    


Q ss_pred             hhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCC
Q 005038          503 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS  582 (717)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  582 (717)
                                                       ++.|+.|+||+|+++ .+|..+..++.|++|...+|.+. ..| .+.
T Consensus       406 ---------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  406 ---------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ---------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence                                             337999999999999 67899999999999999999999 778 889


Q ss_pred             CCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038          583 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       583 ~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      .++.|+.+|+|.|.++...-..-...++|++||++||...
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            9999999999999998544333334489999999999853

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.8e-33  Score=279.55  Aligned_cols=366  Identities=29%  Similarity=0.376  Sum_probs=254.9

Q ss_pred             CCCCCEEEccCCCCc-ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCc
Q 005038          144 QHDLEYVDLSHIKMN-GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY  222 (717)
Q Consensus       144 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~  222 (717)
                      ++..+-+|+++|.++ +.+|..+ ..+++++.|.|....+. .+|..++.+.+|++|.+++|++. .+...+.+ ++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhH
Confidence            345677899999888 4677775 78889999999887765 46778888889999999998876 44444433 77888


Q ss_pred             EEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038          223 VFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG  301 (717)
Q Consensus       223 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  301 (717)
                      .+.+..|++.. -+|..+..+..|+.||||+|+++ ++|..+- ...++-+|+||+|+|..+....|.+++.|-.|||++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            88888887753 46777888888888888888888 8888775 477888888888888876666677888888888888


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCccc-CCcccccCCCCCCCEEEccCCcCcccC
Q 005038          302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLDSLQILDISDNNISGSL  380 (717)
Q Consensus       302 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~  380 (717)
                      |++. .+|..+..+..|++|+|++|++....-..+.++++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.   
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---  235 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---  235 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC---
Confidence            8887 55556777888888888888776433344555667777777776543 235666666667777777766654   


Q ss_pred             CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC
Q 005038          381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN  460 (717)
Q Consensus       381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  460 (717)
                                           .+|. .+..+++|+.|+||+|+|+. +.-......+|++|+++.|+++ ..|..++.++
T Consensus       236 ---------------------~vPe-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  236 ---------------------IVPE-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             ---------------------cchH-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence                                 1222 25566777777777777763 2333444567777777777777 5677777777


Q ss_pred             CCCEEEccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccccc
Q 005038          461 QLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL  539 (717)
Q Consensus       461 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  539 (717)
                      .|+.|...+|+++- -+|...+.                                                     +..|
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGK-----------------------------------------------------L~~L  318 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGK-----------------------------------------------------LIQL  318 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhh-----------------------------------------------------hhhh
Confidence            77777777777642 12222222                                                     2246


Q ss_pred             ceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC
Q 005038          540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  598 (717)
Q Consensus       540 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~  598 (717)
                      +.+...+|.+. .+|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+-.
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            66666666655 66666666666666666666666 56666666666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.3e-33  Score=277.64  Aligned_cols=382  Identities=28%  Similarity=0.368  Sum_probs=314.0

Q ss_pred             ccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEc
Q 005038          122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV  201 (717)
Q Consensus       122 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  201 (717)
                      .+-+++++|....+.+|.....++.++.|.|...++. .+|+.+ +.+.+|++|.+++|++... ...+..++.||.+++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            4445564444444578999999999999999999887 889987 7899999999999988743 345778899999999


Q ss_pred             cCCcCCcc-CCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCccc
Q 005038          202 SNNNIRGH-IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL  280 (717)
Q Consensus       202 s~n~i~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i  280 (717)
                      ..|++... +|.+++. +..|..|++++|++. ..|..+.+-+++-+|+||+|+|. +||..++.+++.|-.||||+|++
T Consensus        86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            99988644 7888887 789999999999998 68888999999999999999998 99999999999999999999999


Q ss_pred             CccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCc-CcCCcccCCCCCCCEEEccCCcccCCcccc
Q 005038          281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVE  359 (717)
Q Consensus       281 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  359 (717)
                      . ..|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            8 57778889999999999999887543345667788999999987543 468888999999999999999998 78999


Q ss_pred             cCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCc
Q 005038          360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS  439 (717)
Q Consensus       360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  439 (717)
                      +..+++|+.|++++|+++....                        . .....+|++|++|.|+++ .+|+++.++++|+
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~------------------------~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNM------------------------T-EGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeec------------------------c-HHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            9999999999999999873211                        1 234468999999999999 7899999999999


Q ss_pred             EEEcCCCccc-cccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccc
Q 005038          440 HLILGHNNLE-GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE  518 (717)
Q Consensus       440 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (717)
                      .|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|..+..+                                   
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC-----------------------------------  338 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC-----------------------------------  338 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh-----------------------------------
Confidence            9999999987 235778899999999999998874 555544432                                   


Q ss_pred             eEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEEC
Q 005038          519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL  592 (717)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  592 (717)
                                        ..|+.|.|++|.+. ..|+++.-++.|+.||+..|.-....|.--..-++|+.-++
T Consensus       339 ------------------~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  339 ------------------VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             ------------------HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence                              36999999999998 78999999999999999999876444433222245554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=9.6e-27  Score=221.34  Aligned_cols=272  Identities=21%  Similarity=0.197  Sum_probs=167.9

Q ss_pred             CCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccC-CccccccchhhhhCCCCCC
Q 005038          193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQ  271 (717)
Q Consensus       193 ~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~  271 (717)
                      .+.-..++|..|.|+ .+|...++.+++|+.+++++|.|+.+-|++|..++++..|.+.+ |+|+ .+|...|.++..++
T Consensus        66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            356678888888888 88888888888888888888888888888888888888777666 7888 88888888888888


Q ss_pred             EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCc------------CcCCcccCCC
Q 005038          272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL------------GKIPRWLGNL  339 (717)
Q Consensus       272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~------------~~~~~~~~~l  339 (717)
                      .|.+.-|++..+..++|..++++..|.+.+|.+..+....|..+..++.+.+..|.+.            ...|..++..
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            8888888888878888888888888888888887555557888888888888777632            1122222333


Q ss_pred             CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeC
Q 005038          340 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL  419 (717)
Q Consensus       340 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  419 (717)
                      .......+.+.++.++.+..|...  ++.+                    ..-..+.+...+..|...|..+++|+.|++
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~--~esl--------------------~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl  281 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCS--LESL--------------------PSRLSSEDFPDSICPAKCFKKLPNLRKLNL  281 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhh--HHhH--------------------HHhhccccCcCCcChHHHHhhcccceEecc
Confidence            333333333333333322222211  1111                    111111122222333334555555555555


Q ss_pred             CCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038          420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  488 (717)
Q Consensus       420 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  488 (717)
                      ++|+++.+-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|.....+..
T Consensus       282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            555555555555555555555555555555444445555555555555555555555555554443333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-26  Score=220.95  Aligned_cols=294  Identities=24%  Similarity=0.230  Sum_probs=197.2

Q ss_pred             EEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEEC-C
Q 005038          149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN-S  227 (717)
Q Consensus       149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l-~  227 (717)
                      .++-++-.++ ++|..+   -+....++|..|.|+...+..|+.+++||.||||.|.|+ .|....+..++++..|-+ +
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            3444555555 667543   346789999999999999999999999999999999998 677677777777766554 5


Q ss_pred             CCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcc-
Q 005038          228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-  306 (717)
Q Consensus       228 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-  306 (717)
                      +|+|+......|..+.+++.|.+.-|++. -++...+..++++..|.+.+|.+..+--.+|..+..++.+.+..|.+.. 
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            59999777788999999999999999998 8888888889999999999999987666689999999999998887331 


Q ss_pred             -----------cCcccccCCCCCCEEEccCCcCcCcCCcccCC-CCCCCEEEccCCcccCC-cccccCCCCCCCEEEccC
Q 005038          307 -----------EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN-LTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISD  373 (717)
Q Consensus       307 -----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~  373 (717)
                                 ..|..++...-..-..+.+.++..+-+..|.. ...+..--.+.+...+. ....|..+++|+.|++++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                       22233333333334444455544333333322 11221111222222223 334588999999999999


Q ss_pred             CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038          374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  453 (717)
Q Consensus       374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  453 (717)
                      |+++++-+.+                        |.+..++++|.|..|++.......|.++..|+.|+|.+|+|+...|
T Consensus       284 N~i~~i~~~a------------------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  284 NKITRIEDGA------------------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             Cccchhhhhh------------------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            9998655555                        4444555555555555544444445555555555555555555555


Q ss_pred             hhccCCCCCCEEEccCCcC
Q 005038          454 VQLCELNQLQLLDLSNNNL  472 (717)
Q Consensus       454 ~~l~~l~~L~~L~L~~n~l  472 (717)
                      ..|..+.+|..|.+-.|++
T Consensus       340 ~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccccccceeeeeehccCcc
Confidence            5555555555555555543

>PLN03210 Resistant to P

Probab=99.91  E-value=1.8e-22  Score=237.52  Aligned_cols=340  Identities=21%  Similarity=0.245  Sum_probs=182.2

Q ss_pred             CcCCCCCcCEEEccCCcC------CccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchh
Q 005038          189 PIHSHKRLRQLDVSNNNI------RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH  262 (717)
Q Consensus       189 ~~~~~~~L~~L~ls~n~i------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  262 (717)
                      .|.++++|+.|.+..+..      ...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            355566666666654322      11233333332335666666655554 444444 3456666666666655 44444


Q ss_pred             hhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCC
Q 005038          263 LAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL  342 (717)
Q Consensus       263 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  342 (717)
                      +. .+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|
T Consensus       630 ~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 VH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             cc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            42 35666666666544332333 24555666666666655444555556666666666666654433445433 45566


Q ss_pred             CEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc------ccCccccCCCCcCCE
Q 005038          343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG------QLKRGTFFNCSSLVT  416 (717)
Q Consensus       343 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~  416 (717)
                      +.|++++|......|..   .++|+.|++++|.+. .+|......+|+.|.+.++....      .+....+...++|++
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            66666665433333321   245566666666554 33333344555555554432110      011111223456677


Q ss_pred             EeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCC
Q 005038          417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD  496 (717)
Q Consensus       417 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  496 (717)
                      |++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            7777666555566666667777777776664333444443 5666777777666433222210                 


Q ss_pred             cchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC
Q 005038          497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS  576 (717)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  576 (717)
                                                             .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...
T Consensus       845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence                                                   124667777777766 4566677777777777776433334


Q ss_pred             CCcCCCCCCCCCEEECCCCc
Q 005038          577 IPSTFSNLKHVESLDLSNNK  596 (717)
Q Consensus       577 ~p~~~~~l~~L~~L~L~~N~  596 (717)
                      +|..+..+++|+.+++++|.
T Consensus       885 l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCcccccccCCCeeecCCCc
Confidence            55566667777777777765

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=3.4e-22  Score=235.33  Aligned_cols=342  Identities=22%  Similarity=0.271  Sum_probs=246.6

Q ss_pred             ccccccCCCCcEEECCCCC------CCccCCccccCCC-CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccC
Q 005038          212 VKIGDVLPSLYVFNNSMNA------LDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL  284 (717)
Q Consensus       212 ~~~~~~l~~L~~L~l~~n~------~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  284 (717)
                      ...+..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+.  ..+|++|+++++.+. ..
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-cc
Confidence            3445557788888775543      2234566666653 5888888888887 7777663  678888888888876 35


Q ss_pred             cccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCC
Q 005038          285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD  364 (717)
Q Consensus       285 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  364 (717)
                      +..+..+++|++|+|+++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            66677788888888887765445554 7778888888888887666778888888888888888875444556554 678


Q ss_pred             CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc-------ccchhhhCCCC
Q 005038          365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG-------SIPDWVDGLSQ  437 (717)
Q Consensus       365 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-------~~~~~~~~l~~  437 (717)
                      +|+.|++++|.....+|..  ..+|+.|++++|.+. .++.. + .+++|++|++.++....       ..+..+...++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc-c-cccccccccccccchhhccccccccchhhhhcccc
Confidence            8888888888665555533  457888888888763 44433 2 46777777777643211       11222233568


Q ss_pred             CcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccccccc
Q 005038          438 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH  517 (717)
Q Consensus       438 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (717)
                      |+.|++++|.....+|..+..+++|+.|++++|...+.+|...                                     
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------  822 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------  822 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence            8888888887776778888888888888888876443344321                                     


Q ss_pred             ceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038          518 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  597 (717)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i  597 (717)
                                       .+++|+.|++++|......|..   .++|++|+|++|.++ .+|..+..+++|+.|++++|+-
T Consensus       823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence                             2457999999998765555543   368999999999998 6888999999999999999766


Q ss_pred             CccCchhhcCCCCCCEEeccCCcCe
Q 005038          598 NGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       598 ~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      ...+|..+..+++|+.+++++|.--
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCccc
Confidence            6678888889999999999999643

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.6e-20  Score=201.73  Aligned_cols=81  Identities=28%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      +|+.|++++|++++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|+.+..+++|+.|+++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            35555555555553 3322   235556666666665 24432   234555666666665 455556666666666666


Q ss_pred             CCcCeecCCC
Q 005038          618 YNNLSGEIPE  627 (717)
Q Consensus       618 ~N~l~~~~p~  627 (717)
                      +|++++..|.
T Consensus       454 ~N~Ls~~~~~  463 (788)
T PRK15387        454 GNPLSERTLQ  463 (788)
T ss_pred             CCCCCchHHH
Confidence            6666655444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.5e-20  Score=200.98  Aligned_cols=268  Identities=27%  Similarity=0.367  Sum_probs=207.9

Q ss_pred             CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEE
Q 005038          243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY  322 (717)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  322 (717)
                      ..-..|+++.+.++ .+|..+.   ++|+.|++++|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceee
Confidence            34678999999998 8898764   489999999999985 443   25889999999999984 4542   46899999


Q ss_pred             ccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccc
Q 005038          323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ  402 (717)
Q Consensus       323 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  402 (717)
                      +++|.+. .+|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++.+. |..  +..|+.|++++|.+.+ 
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC--cccccccccccCcccc-
Confidence            9999887 45543   2578899999999985 443   347899999999999864 332  4568889999998853 


Q ss_pred             cCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038          403 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  482 (717)
Q Consensus       403 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  482 (717)
                      ++..    ..+|++|++++|++++ +|..   .++|+.|++++|++.. +|..   ..+|+.|++++|++++ +|..   
T Consensus       337 LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---  400 (788)
T PRK15387        337 LPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---  400 (788)
T ss_pred             cccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---
Confidence            4431    2579999999999985 4542   3678899999999985 4432   3579999999999874 2221   


Q ss_pred             ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCcc
Q 005038          483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR  562 (717)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  562 (717)
                                                                           .+.|+.|++++|++.+ +|..   ..+
T Consensus       401 -----------------------------------------------------~s~L~~LdLS~N~Lss-IP~l---~~~  423 (788)
T PRK15387        401 -----------------------------------------------------PSELKELMVSGNRLTS-LPML---PSG  423 (788)
T ss_pred             -----------------------------------------------------ccCCCEEEccCCcCCC-CCcc---hhh
Confidence                                                                 1268999999999985 5643   357


Q ss_pred             CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC
Q 005038          563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  608 (717)
Q Consensus       563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l  608 (717)
                      |+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            889999999999 789999999999999999999998888776443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=6.3e-18  Score=185.76  Aligned_cols=116  Identities=27%  Similarity=0.382  Sum_probs=51.8

Q ss_pred             CEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccC
Q 005038          246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN  325 (717)
Q Consensus       246 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  325 (717)
                      ..|+++++.++ .+|..+   .++++.|++++|+++. +|..+.  ++|++|++++|.++ .+|..+.  .+|+.|++++
T Consensus       181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        181 TELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            44445444444 444332   2344455555554442 222221  34555555555544 2233222  2455555555


Q ss_pred             CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038          326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      |.+. .+|..+.  .+|+.|++++|++.. +|..+.  ++|+.|++++|+++
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc
Confidence            5554 3343332  345555555555552 333332  34555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.2e-17  Score=183.60  Aligned_cols=96  Identities=27%  Similarity=0.295  Sum_probs=41.5

Q ss_pred             cCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEc
Q 005038          196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL  275 (717)
Q Consensus       196 L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  275 (717)
                      ...|+++++.++ .+|..+.   +.++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            445555555554 3443322   24445555555444 2333222  24555555555554 4444332   23445555


Q ss_pred             cCcccCccCcccccCCCCCCeEECcCCcCc
Q 005038          276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFV  305 (717)
Q Consensus       276 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  305 (717)
                      ++|.+.. +|..+.  .+|++|++++|++.
T Consensus       249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        249 SINRITE-LPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             cCCccCc-CChhHh--CCCCEEECcCCccC
Confidence            5544442 222221  23444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4.1e-19  Score=182.36  Aligned_cols=84  Identities=25%  Similarity=0.333  Sum_probs=42.4

Q ss_pred             ccceeeCCCCccCCCCccccc-----CCccCCeEeCCCcccCC----CCCcCCCCCCCCCEEECCCCcCCcc----Cchh
Q 005038          538 LLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGK----IPHQ  604 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~N~i~~~----~p~~  604 (717)
                      .|+.|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.+...    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            455555555555432221111     12566666666666541    1223344456666677777666633    2233


Q ss_pred             hcCC-CCCCEEeccCCcC
Q 005038          605 LVEL-KTLEVFSVAYNNL  621 (717)
Q Consensus       605 ~~~l-~~L~~L~l~~N~l  621 (717)
                      +... +.|+.+++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            3333 5666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.6e-18  Score=177.94  Aligned_cols=219  Identities=23%  Similarity=0.293  Sum_probs=113.9

Q ss_pred             cccCCCCCCEEEccCCcCcCcCCcccCCCC---CCCEEEccCCcccC----CcccccCCC-CCCCEEEccCCcCcccCCC
Q 005038          311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLT---RLQYIIMPNNHLEG----PIPVEFCQL-DSLQILDISDNNISGSLPS  382 (717)
Q Consensus       311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~---~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~~~~  382 (717)
                      .+..+++|+.|++++|.+.+..+..+..+.   +|+.|++++|.+.+    .+...+..+ ++|+.|++++|.+++....
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            344455555555555555433333332222   25555555555442    112223334 5556666666555421100


Q ss_pred             ccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc----cchhhhCCCCCcEEEcCCCcccccc----ch
Q 005038          383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGEV----SV  454 (717)
Q Consensus       383 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~  454 (717)
                                         .+. ..+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+++..    ..
T Consensus       156 -------------------~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         156 -------------------ALA-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             -------------------HHH-HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence                               011 1244556677777777766532    2223444567777777777765332    23


Q ss_pred             hccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccc
Q 005038          455 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK  534 (717)
Q Consensus       455 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (717)
                      .+..+++|++|++++|++++.....+...-                                              .  .
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~----------------------------------------------~--~  247 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASAL----------------------------------------------L--S  247 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHH----------------------------------------------h--c
Confidence            345667777777777776531111110000                                              0  0


Q ss_pred             cccccceeeCCCCccCCC----CcccccCCccCCeEeCCCcccCCC----CCcCCCCC-CCCCEEECCCCcC
Q 005038          535 VLSLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGS----IPSTFSNL-KHVESLDLSNNKL  597 (717)
Q Consensus       535 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~i  597 (717)
                      ..+.|+.|++++|.+++.    +...+..+++|+++++++|.++..    ....+... +.|++|++.+|++
T Consensus       248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            123677788888877621    233455667888888888888743    33334444 6788888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.3e-18  Score=145.42  Aligned_cols=160  Identities=30%  Similarity=0.491  Sum_probs=88.7

Q ss_pred             cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEE
Q 005038          386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL  465 (717)
Q Consensus       386 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  465 (717)
                      ...++.|.++.|+++ .+++. ++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            334444444444442 23333 555666777777777766 45566666777777777777666 566667777777777


Q ss_pred             EccCCcCccC-CCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeC
Q 005038          466 DLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL  544 (717)
Q Consensus       466 ~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  544 (717)
                      |+.+|++... .|.-|..                                                     ++.|+.|+|
T Consensus       108 dltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl  134 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYL  134 (264)
T ss_pred             hccccccccccCCcchhH-----------------------------------------------------HHHHHHHHh
Confidence            7777665431 1221111                                                     224555555


Q ss_pred             CCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhh
Q 005038          545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL  605 (717)
Q Consensus       545 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~  605 (717)
                      +.|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|++.+|+++ .+|..+
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            555554 45555555555555555555555 45555555555555555555555 444333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1e-16  Score=135.54  Aligned_cols=156  Identities=28%  Similarity=0.446  Sum_probs=104.8

Q ss_pred             ccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCC
Q 005038          288 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ  367 (717)
Q Consensus       288 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  367 (717)
                      +..+.+++.|.|++|+++ .+|..++.+.+|+.|++++|++. ..|..++++++|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            346677888889999888 55667888999999999999887 67888889999999999988887 7888999999999


Q ss_pred             EEEccCCcCccc-CCC-ccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC
Q 005038          368 ILDISDNNISGS-LPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH  445 (717)
Q Consensus       368 ~L~l~~n~~~~~-~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  445 (717)
                      .||+.+|.+... .|. .|.+..|+.|++++|.+ ..+|.. .+.+++|+.|.+.+|.+- ..|..++.+..|++|.+++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999998887632 222 22244444444444444 122222 444555555555555444 3444445555555555555


Q ss_pred             Cccc
Q 005038          446 NNLE  449 (717)
Q Consensus       446 n~l~  449 (717)
                      |+++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            5554

>PLN03150 hypothetical protein; Provisional

Probab=99.49  E-value=5.4e-14  Score=154.64  Aligned_cols=118  Identities=35%  Similarity=0.612  Sum_probs=107.2

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCeecCCCCCccc-CCCCcccccCCcCCCCCCC-CCCC
Q 005038          618 YNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PICR  655 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~l-~~C~  655 (717)
                      +|+++|.+|..+... ..+..+.+.+|+.+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 3456778999999999764 3374

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=2.8e-12  Score=129.14  Aligned_cols=154  Identities=32%  Similarity=0.504  Sum_probs=98.4

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      +..+..|+.+.+..|.+. .+|..+..+..|+.++++.|++. ..|..++.++ |+.|-+++|+++.. |...+      
T Consensus        94 ~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~l-p~~ig------  163 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSL-PEEIG------  163 (722)
T ss_pred             HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccC-Ccccc------
Confidence            333445555555555555 45555566666666666666665 4444455443 55666666665422 22111      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  567 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  567 (717)
                                                                     ....|..||.+.|++. .+|..++++.+|+.|+
T Consensus       164 -----------------------------------------------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  164 -----------------------------------------------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             -----------------------------------------------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence                                                           1335777777777776 5667777888888888


Q ss_pred             CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038          568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      ++.|++. .+|..+..| .|..||+|.|+++ .+|..|..|+.|++|-|.+|+++
T Consensus       196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            8888877 455555644 3777888888887 77778888888888888888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=2.2e-12  Score=130.00  Aligned_cols=175  Identities=30%  Similarity=0.456  Sum_probs=151.2

Q ss_pred             CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038          410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  489 (717)
Q Consensus       410 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  489 (717)
                      .+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|..+||+.|+++.. |..+..+      
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~l------  143 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDL------  143 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcC------
Confidence            3455577899999998 67888888899999999999998 7888999999999999999999743 3322222      


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCC
Q 005038          490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  569 (717)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  569 (717)
                                                                      -|+.|-+++|+++ .+|+.++.+..|..||.+
T Consensus       144 ------------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen  144 ------------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             ------------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence                                                            2889999999998 778889999999999999


Q ss_pred             CcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCC
Q 005038          570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFL  646 (717)
Q Consensus       570 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  646 (717)
                      .|.+. .+|..++++.+|+.|.+..|++. .+|+++..+ .|..||+|.|+++ .+|-.|..|..+..+.+++||..
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            99999 78889999999999999999998 677777754 5899999999999 78988999999999999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.8e-11  Score=113.53  Aligned_cols=60  Identities=43%  Similarity=0.487  Sum_probs=38.2

Q ss_pred             CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc
Q 005038          411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                      +..|+++||++|.|+ .+.+...-.|.++.|++++|.++...  .+..+++|+.||+++|.++
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH
Confidence            355677777777776 34455555677777777777776322  2566666666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4.1e-11  Score=107.30  Aligned_cols=133  Identities=26%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             ccCCCCCCeeeCCCCCCCCCcchhcc-CCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCC
Q 005038           15 LCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS   93 (717)
Q Consensus        15 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~   93 (717)
                      +.+..++++|+|++|.|+.+  +.++ .+.+|+.|||++|.|+ .++.  +..+++|++|++++|.++. +.......++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            66777899999999999854  3455 5789999999999998 7776  8889999999999999973 3322224689


Q ss_pred             CCCEEEccCCcccccccccccccCCCccccEEEccCCCCCC--CCCchhhcCCCCCCEEEccCC
Q 005038           94 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG--FIFPKFLYHQHDLEYVDLSHI  155 (717)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~  155 (717)
                      +|+.|++++|++.+...  ...+..+++|+.|++.+|....  ..-...+..+++|+.||-...
T Consensus        89 ~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             T--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             cCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            99999999999976432  3345667899999996554321  123346778999999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.1e-11  Score=118.08  Aligned_cols=165  Identities=20%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             cCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECCCCcccCcCCcc-cccCCCCCCEEEccCCcccccccccccccC
Q 005038           40 ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIPISLE-PLFNYSRLKIFNAENNEIKAEITESHSLIA  117 (717)
Q Consensus        40 ~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  117 (717)
                      +++++|+...|.++.+. .++. .....|++++.|||++|-+..-.+.. ....+++|+.|+++.|++.......     
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-----  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-----  191 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence            35667777777776664 3221 23455677777777777655222211 2245667777777776654321110     


Q ss_pred             CCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcC
Q 005038          118 PKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR  197 (717)
Q Consensus       118 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  197 (717)
                                            .-..+++|+.|.++.|.++-.-..++...+++|+.|++..|........+...++.|+
T Consensus       192 ----------------------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  192 ----------------------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             ----------------------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence                                  0013456667777777666433444455667777777777754333344444556677


Q ss_pred             EEEccCCcCCccCCccccccCCCCcEEECCCCCCC
Q 005038          198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD  232 (717)
Q Consensus       198 ~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (717)
                      .|||++|++-..--......++.|..|+++.+.+.
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcc
Confidence            77777776652211122223555555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=3.1e-11  Score=111.97  Aligned_cols=136  Identities=28%  Similarity=0.287  Sum_probs=109.5

Q ss_pred             cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038          238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS  317 (717)
Q Consensus       238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  317 (717)
                      .+.....|+.+|+|+|.|+ .+.+.+- -.+.++.|++|+|.|..+  ..+..+++|+.|||++|.++ ....+-.++.+
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            3445678999999999998 7777765 379999999999999753  34778999999999999887 44455677889


Q ss_pred             CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEEccCCcCcccC
Q 005038          318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNISGSL  380 (717)
Q Consensus       318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~  380 (717)
                      +++|.+++|.+.+  -..++.+-+|..||+++|++... ....++++|.|+++.+.+|++.+..
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999999998853  34577788999999999998743 2345788999999999999987544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.3e-10  Score=119.60  Aligned_cols=84  Identities=37%  Similarity=0.590  Sum_probs=42.0

Q ss_pred             cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038          539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  618 (717)
Q Consensus       539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~  618 (717)
                      |+++.+++|.+. ..+..+..++++..+.+.+|++. ..+..++.+++++.|++++|.++...+  +..+.+++.|++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            555555555322 23344455555555555555555 224445555555555555555552222  45555555555555


Q ss_pred             CcCeecCC
Q 005038          619 NNLSGEIP  626 (717)
Q Consensus       619 N~l~~~~p  626 (717)
                      |.++...|
T Consensus       287 n~~~~~~~  294 (394)
T COG4886         287 NSLSNALP  294 (394)
T ss_pred             ccccccch
Confidence            55554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.8e-11  Score=118.40  Aligned_cols=211  Identities=23%  Similarity=0.220  Sum_probs=124.9

Q ss_pred             hCCCCCCEEEccCCcCcccCc-cCcCCCCCcCEEEccCCcCCccCC-ccccccCCCCcEEECCCCCCCccCCcc-ccCCC
Q 005038          167 ENNTKLETLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIP-VKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMK  243 (717)
Q Consensus       167 ~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~  243 (717)
                      .++.+|+.+.|.++.+..... .....|++++.||||.|-+....+ ..+.+.+|+|+.|+++.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            356778888888887764332 345678888888888887763222 345566788888888888775322111 12467


Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc-ccccCCCCCCEEE
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLY  322 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  322 (717)
                      +|+.|.++.|.++..--......+++|+.|++..|....+.......+..|++|||++|.+..... ...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            788888888877744444444567888888888775433344444556777888888777663211 2355667777777


Q ss_pred             ccCCcCcCc-CCcc-----cCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEEccCCcCc
Q 005038          323 LNNNSLLGK-IPRW-----LGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       323 L~~n~~~~~-~~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ++.+.+... .|+.     ...+++|++|++..|++.+. .-..+..+++|+.|.+..|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            777766532 1111     12345566666666655321 1122233444444444444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=3.3e-11  Score=114.68  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             CCCCEEEccCCcCcCc----CCcccCCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcCcccCCCccccc
Q 005038          316 SSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNISGSLPSCFHPL  387 (717)
Q Consensus       316 ~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  387 (717)
                      +.|+++...+|++...    ....|...+.|+.+.+..|.|...    ....+..+++|+.||+.+|.++....      
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs------  230 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS------  230 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH------
Confidence            4555555555554321    112344445555555555554311    12234455555555555555432110      


Q ss_pred             cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhh-----hCCCCCcEEEcCCCccccc----cchhccC
Q 005038          388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-----DGLSQLSHLILGHNNLEGE----VSVQLCE  458 (717)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~  458 (717)
                                    .....++..+++|+.|++++|.+......+|     ...|+|++|.+.+|.++..    ....+..
T Consensus       231 --------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  231 --------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             --------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence                          1112235556777777777777765433322     2367788888888877632    2233455


Q ss_pred             CCCCCEEEccCCcC
Q 005038          459 LNQLQLLDLSNNNL  472 (717)
Q Consensus       459 l~~L~~L~L~~n~l  472 (717)
                      .|.|..|+|++|.+
T Consensus       297 k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRL  310 (382)
T ss_pred             chhhHHhcCCcccc
Confidence            77888888888877

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=5.7e-10  Score=117.81  Aligned_cols=102  Identities=33%  Similarity=0.457  Sum_probs=53.7

Q ss_pred             EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCC-CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCC
Q 005038          272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN  350 (717)
Q Consensus       272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  350 (717)
                      .+++..+.+.. ....+..++.++.|++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555431 1222334456666666666666 3333344442 6666666666665 33344555666666666666


Q ss_pred             cccCCcccccCCCCCCCEEEccCCcCc
Q 005038          351 HLEGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       351 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ++.. ++......+.|+.|++++|++.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc
Confidence            6653 3333334555666666666555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=4.6e-11  Score=113.76  Aligned_cols=138  Identities=18%  Similarity=0.197  Sum_probs=93.7

Q ss_pred             ccCCCCCCEEEccCCccccccc---hhhhhCCCCCCEEEccCcccCcc----CcccccCCCCCCeEECcCCcCccc----
Q 005038          239 FGNMKFLQILDLSNNHLTGEIP---EHLAVGCVNLQFLALSNNNLQGH----LFSRNFNLTNLQWLQLEGNRFVGE----  307 (717)
Q Consensus       239 l~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----  307 (717)
                      .+.-+.|+++...+|++.....   ...++..+.|+.+.++.|.|...    ...++..+++|+.|||.+|.++..    
T Consensus       153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            3455788999999988863222   22334567888999988887632    234566788899999998877643    


Q ss_pred             CcccccCCCCCCEEEccCCcCcCcCCccc-----CCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcC
Q 005038          308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNI  376 (717)
Q Consensus       308 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~  376 (717)
                      +...+..+++|+.|++++|.+.......|     ...++|+.+.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            23456677788888888888765544333     2367888888888877632    222344567788888888877

>PLN03150 hypothetical protein; Provisional

Probab=99.00  E-value=7.2e-10  Score=122.28  Aligned_cols=114  Identities=32%  Similarity=0.522  Sum_probs=101.0

Q ss_pred             CCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccc
Q 005038          461 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS  540 (717)
Q Consensus       461 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  540 (717)
                      .++.|+|++|.+.+.+|..+..+.                                                     .|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            367889999999888887665543                                                     799


Q ss_pred             eeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC-CCCCEEeccCC
Q 005038          541 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN  619 (717)
Q Consensus       541 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l-~~L~~L~l~~N  619 (717)
                      .|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+... .++..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 57789999999


Q ss_pred             cCeecCCC
Q 005038          620 NLSGEIPE  627 (717)
Q Consensus       620 ~l~~~~p~  627 (717)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            87765554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=4.3e-10  Score=100.80  Aligned_cols=126  Identities=33%  Similarity=0.370  Sum_probs=39.8

Q ss_pred             CCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCC
Q 005038          192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ  271 (717)
Q Consensus       192 ~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~  271 (717)
                      ++.++++|+|++|.|+ .+ ..+...+.+|+.|++++|.+...  +.+..++.|++|++++|+|+ .+.+.+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3445677777777775 33 23443456677777777777642  23667788888888888887 66555544577888


Q ss_pred             EEEccCcccCccC-cccccCCCCCCeEECcCCcCcccCc---ccccCCCCCCEEE
Q 005038          272 FLALSNNNLQGHL-FSRNFNLTNLQWLQLEGNRFVGEIP---QSLSKCSSLEGLY  322 (717)
Q Consensus       272 ~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  322 (717)
                      +|++++|+|.... ...+..+++|++|+|.+|.+.....   ..+..+|+|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            8888888776421 1334456666666666666553210   1234455555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.91  E-value=1.7e-10  Score=121.78  Aligned_cols=246  Identities=29%  Similarity=0.295  Sum_probs=140.1

Q ss_pred             CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      ..++.+++..|.+.. .-..+..+++|+.|++.+|.+.. +...+..+++|++|++++|.|+..  ..+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            344444444444442 11224445555556665555542 222244556666666666666543  22344445666666


Q ss_pred             cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCcccc
Q 005038          372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEG  450 (717)
Q Consensus       372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~  450 (717)
                      ++|.+...                        .  .+..+..|+.+++++|++....+ . ...+.+++.+++.+|.+..
T Consensus       148 ~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            66655421                        0  13345667777777777664433 1 3556677777777777663


Q ss_pred             ccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038          451 EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI  530 (717)
Q Consensus       451 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (717)
                      ..  .+..+..+..+++..|.++..-+.                                                    
T Consensus       201 i~--~~~~~~~l~~~~l~~n~i~~~~~l----------------------------------------------------  226 (414)
T KOG0531|consen  201 IE--GLDLLKKLVLLSLLDNKISKLEGL----------------------------------------------------  226 (414)
T ss_pred             cc--chHHHHHHHHhhcccccceeccCc----------------------------------------------------
Confidence            22  233334444446666665422110                                                    


Q ss_pred             ecccccc--ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc---Cchh-
Q 005038          531 YQGKVLS--LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK---IPHQ-  604 (717)
Q Consensus       531 ~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~---~p~~-  604 (717)
                         ..+.  .|+.+++++|++.. .+..+..+..+..|++++|++...  ..+...+.+..+....|++...   .... 
T Consensus       227 ---~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  227 ---NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             ---ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence               0011  27788888888773 335677788888888888888754  4456677778888888887622   1221 


Q ss_pred             hcCCCCCCEEeccCCcCeecCCCC
Q 005038          605 LVELKTLEVFSVAYNNLSGEIPEW  628 (717)
Q Consensus       605 ~~~l~~L~~L~l~~N~l~~~~p~~  628 (717)
                      ....+.++...+.+|+.....+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             ccccccccccccccCccccccccc
Confidence            455677888888888887766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1e-09  Score=80.67  Aligned_cols=59  Identities=41%  Similarity=0.633  Sum_probs=32.3

Q ss_pred             cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCc
Q 005038          562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  620 (717)
Q Consensus       562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~  620 (717)
                      +|++|++++|+++.+.++.|.++++|++|++++|+++...|+.|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555554444555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.3e-09  Score=80.07  Aligned_cols=61  Identities=51%  Similarity=0.663  Sum_probs=57.2

Q ss_pred             cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038          537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  597 (717)
Q Consensus       537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i  597 (717)
                      ++|++|++++|++....+..|.++++|++|++++|.++.+.|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3689999999999988778999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=8.3e-10  Score=116.55  Aligned_cols=218  Identities=28%  Similarity=0.305  Sum_probs=142.5

Q ss_pred             CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEe
Q 005038          314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH  393 (717)
Q Consensus       314 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  393 (717)
                      .+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+ ...+..+++|++|++++|.|+...             
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~-------------  134 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE-------------  134 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc-------------
Confidence            44556666666666653 223355667777777777777643 222556667777777777665321             


Q ss_pred             ccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcC
Q 005038          394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNL  472 (717)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l  472 (717)
                                .   +..++.|+.|++++|.++..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+
T Consensus       135 ----------~---l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  135 ----------G---LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ----------c---hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence                      1   44556688899999988743  335567888899999998885554 2 56778888888888877


Q ss_pred             ccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCC
Q 005038          473 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH  552 (717)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  552 (717)
                      ......                                                       .....+..+++..|.++..
T Consensus       199 ~~i~~~-------------------------------------------------------~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  199 REIEGL-------------------------------------------------------DLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             hcccch-------------------------------------------------------HHHHHHHHhhcccccceec
Confidence            532211                                                       0112344557778877643


Q ss_pred             CcccccCCc--cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038          553 IPPQIGNLT--RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       553 ~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~  622 (717)
                      .+  +..+.  .|+++++++|++. ..+..+..+..+..|++.+|++...  ..+.....+..+....|.+.
T Consensus       224 ~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  224 EG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            22  22333  3899999999998 5546778888999999999998743  23455666777777777766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=6.7e-09  Score=117.04  Aligned_cols=59  Identities=27%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             cccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEECC
Q 005038          535 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLS  593 (717)
Q Consensus       535 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~  593 (717)
                      +.++|+.|.+.++...+.+.+....+..++++.+..+.+.+. .-...++++++..+.++
T Consensus       768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            456788888888887766666666666677666666666644 22334444444444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=8.4e-09  Score=116.24  Aligned_cols=288  Identities=24%  Similarity=0.262  Sum_probs=163.4

Q ss_pred             CCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCc--CCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCE
Q 005038          170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN--IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  247 (717)
Q Consensus       170 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~--i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  247 (717)
                      ...+...+-+|.+.....  -..+++|++|-+.+|.  +. .++..++..++.|++|++++|.-.+.+|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            455666666665543221  1233467777777775  43 666666777888888888887776788888888888888


Q ss_pred             EEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCc--ccCcccccCCCCCCEEEccC
Q 005038          248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV--GEIPQSLSKCSSLEGLYLNN  325 (717)
Q Consensus       248 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~  325 (717)
                      |++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+......  ...-..+..+.+|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            888888887 88888764 788888888877655555566666888888888665421  11112334445555555433


Q ss_pred             CcCcCcCCcccCCCCCCC----EEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-------cccccEEec
Q 005038          326 NSLLGKIPRWLGNLTRLQ----YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-------PLSIKQVHL  394 (717)
Q Consensus       326 n~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~L~l  394 (717)
                      ...  .+-..+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+......+..       ++++..+..
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            322  1111122222322    2232222222 3445567788888888888877543332211       223333334


Q ss_pred             cCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc-cchhccCCCCCCEEEc
Q 005038          395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE-VSVQLCELNQLQLLDL  467 (717)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L  467 (717)
                      .++.........  .-.++|+.|.+..+...+.+......+..+..+.+..+.+.+. ......+++++..+.+
T Consensus       755 ~~~~~~r~l~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  755 LNCHMLRDLTWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             hccccccccchh--hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence            444332222211  1236777777777765555544555555565555555555544 2333444444444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=7.2e-10  Score=103.11  Aligned_cols=86  Identities=22%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             CCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCC-cCCccCCccccccCCCCcEE
Q 005038          146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN-NIRGHIPVKIGDVLPSLYVF  224 (717)
Q Consensus       146 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~~l~~L~~L  224 (717)
                      .|+++||+...++..--..++..|++|+.|.+.++.+.+.+...+.+-.+|+.|+++.+ .++......+...++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47777777766664444445566777777777777777666666666677777777664 34322222333334455555


Q ss_pred             ECCCCCC
Q 005038          225 NNSMNAL  231 (717)
Q Consensus       225 ~l~~n~~  231 (717)
                      +++.|..
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            5555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.3e-09  Score=98.76  Aligned_cols=221  Identities=22%  Similarity=0.184  Sum_probs=144.4

Q ss_pred             CEEEccCCCCcccCChhhhhC--CCCCCEEEccCCcCccc-CccCcCCC-CCcCEEEccCCcCCccCCccccccCCCCcE
Q 005038          148 EYVDLSHIKMNGEFPNWLLEN--NTKLETLFLVNDSLAGP-FRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLPSLYV  223 (717)
Q Consensus       148 ~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~-~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~  223 (717)
                      +.+|+.+-.+.   |..+ +.  -..+..+.+....+... +.+.+.-+ .+|+++|||...|+..--..+.+.+++|+.
T Consensus       139 ~~lDl~~r~i~---p~~l-~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  139 QTLDLTGRNIH---PDVL-GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             eeeccCCCccC---hhHH-HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence            45666665544   2222 11  23466666665544433 22222222 368999999988875555556667889999


Q ss_pred             EECCCCCCCccCCccccCCCCCCEEEccCC-ccccccchhhhhCCCCCCEEEccCcccCccCcccc-c-CCCCCCeEECc
Q 005038          224 FNNSMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-F-NLTNLQWLQLE  300 (717)
Q Consensus       224 L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~-~l~~L~~L~L~  300 (717)
                      +.+.++++.+.+...+++...|+.|+++.+ .++..-...++..|+.|.+|++++|.+........ . --++|+.|+|+
T Consensus       215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls  294 (419)
T KOG2120|consen  215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS  294 (419)
T ss_pred             ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence            999999998888888899999999999876 46644455667789999999999997764322111 1 23678888888


Q ss_pred             CCcCc---ccCcccccCCCCCCEEEccCCc-CcCcCCcccCCCCCCCEEEccCCcccCCcccc---cCCCCCCCEEEccC
Q 005038          301 GNRFV---GEIPQSLSKCSSLEGLYLNNNS-LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE---FCQLDSLQILDISD  373 (717)
Q Consensus       301 ~n~l~---~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~  373 (717)
                      ++.-.   ..+..-...+++|.+|||++|. ++......|.+++.|++|.++.|..  ++|..   +...|.|.+|++.+
T Consensus       295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            86421   1122223578888889988874 3333334556778888888887753  34443   45677788888766


Q ss_pred             C
Q 005038          374 N  374 (717)
Q Consensus       374 n  374 (717)
                      +
T Consensus       373 ~  373 (419)
T KOG2120|consen  373 C  373 (419)
T ss_pred             c
Confidence            5

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=3.2e-09  Score=110.41  Aligned_cols=124  Identities=27%  Similarity=0.359  Sum_probs=93.4

Q ss_pred             EEEeeccceeeec-cccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc-CCCCCCCCCEEECCCCcC
Q 005038          520 FEFTTKNIAYIYQ-GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL  597 (717)
Q Consensus       520 ~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~i  597 (717)
                      .+++.+.+..+.. ...++.++.|||++|+++...  .+..++.|++|||++|.++ .+|. ...++. |+.|.+++|.+
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHH
Confidence            3444444444433 245778999999999998553  7899999999999999999 5553 344555 99999999999


Q ss_pred             CccCchhhcCCCCCCEEeccCCcCeecCC-CCCcccCCCCcccccCCcCCCCC
Q 005038          598 NGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGL  649 (717)
Q Consensus       598 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~  649 (717)
                      +..  .++.++.+|+.||+++|-+.+.-. ..+..+..+..+.++|||..|..
T Consensus       245 ~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  245 TTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             Hhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            743  467899999999999998875311 12235667788999999988864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=5.8e-08  Score=90.67  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchh-----hhhCCC
Q 005038          195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEH-----LAVGCV  268 (717)
Q Consensus       195 ~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~~~~~~  268 (717)
                      ++..+-+..|.+...-...-+..+|.+.-|+++.+++.. ..-+++..+++|..|.++++.+.+.+...     +...++
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~  279 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT  279 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence            333344444433322222333334444455555555542 11234556666777777776665333221     112356


Q ss_pred             CCCEEEcc
Q 005038          269 NLQFLALS  276 (717)
Q Consensus       269 ~L~~L~L~  276 (717)
                      +++.|+=+
T Consensus       280 ~v~vLNGs  287 (418)
T KOG2982|consen  280 KVQVLNGS  287 (418)
T ss_pred             ceEEecCc
Confidence            66666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.7e-07  Score=87.64  Aligned_cols=207  Identities=19%  Similarity=0.129  Sum_probs=112.2

Q ss_pred             CCCCEEEccCCccccccc-hhhhhCCCCCCEEEccCcccCc--cCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038          243 KFLQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQG--HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE  319 (717)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  319 (717)
                      ..++.+.+.++.|..... ..+...++.++++||.+|.|+.  .+...+.++|.|+.|+|+.|.+...+...-....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345566666666642222 2334457788888888888863  2233445788899999998887754332113567888


Q ss_pred             EEEccCCcCcC-cCCcccCCCCCCCEEEccCCcccCCcc--cccCC-CCCCCEEEccCCcCcccCC--C-ccccccccEE
Q 005038          320 GLYLNNNSLLG-KIPRWLGNLTRLQYIIMPNNHLEGPIP--VEFCQ-LDSLQILDISDNNISGSLP--S-CFHPLSIKQV  392 (717)
Q Consensus       320 ~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~-l~~L~~L~l~~n~~~~~~~--~-~~~~~~L~~L  392 (717)
                      +|-|.+..+.= .....+..+|.++.|.++.|.......  +.... -+.++++++..|.......  . .-.++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            88888775531 222344567777888887774432211  11111 1244445444443210000  0 0013455566


Q ss_pred             eccCcccccccCccccCCCCcCCEEeCCCCcCCcc-cchhhhCCCCCcEEEcCCCccc
Q 005038          393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS-IPDWVDGLSQLSHLILGHNNLE  449 (717)
Q Consensus       393 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~  449 (717)
                      .+..|.+...-....+...+.+..|+|+.++|.+- --+.+.++++|+.|.++++.+.
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            66666554444444455556666666666665421 1124555666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=5.4e-08  Score=80.12  Aligned_cols=89  Identities=20%  Similarity=0.311  Sum_probs=53.1

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .++.|+|++|++. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+..+|.+. .+|-.+..-+..-..++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4566666666666 45555777777777777777776 55666666777777777777665 444333333333334445


Q ss_pred             CCcCeecCCCCC
Q 005038          618 YNNLSGEIPEWK  629 (717)
Q Consensus       618 ~N~l~~~~p~~~  629 (717)
                      ++++.+..|..+
T Consensus       155 nepl~~~~~~kl  166 (177)
T KOG4579|consen  155 NEPLGDETKKKL  166 (177)
T ss_pred             CCcccccCcccc
Confidence            556665555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=3.3e-08  Score=103.08  Aligned_cols=123  Identities=28%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCc-ccCCCCCCCEEEcc
Q 005038          270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMP  348 (717)
Q Consensus       270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~  348 (717)
                      |...+.++|.+. ....++.-++.|+.|+|++|+++..  +.+..++.|++|||++|.+. .+|. ...++. |+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence            444555555554 2233444456666666666666533  25566666666666666665 2332 222333 6666666


Q ss_pred             CCcccCCcccccCCCCCCCEEEccCCcCcccC--CCccccccccEEeccCccc
Q 005038          349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSCFHPLSIKQVHLSKNML  399 (717)
Q Consensus       349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~~  399 (717)
                      +|.++..  ..+.++.+|+.||+++|-+.+..  ...+.+..|+.|+|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6666532  33455666666666666554321  1222344566666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=2.7e-06  Score=56.81  Aligned_cols=40  Identities=33%  Similarity=0.561  Sum_probs=27.1

Q ss_pred             CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCC
Q 005038           19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS   60 (717)
Q Consensus        19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~   60 (717)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|.++ .++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            46777778877777 45556777777777777777776 444

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=4.5e-07  Score=83.73  Aligned_cols=21  Identities=19%  Similarity=0.086  Sum_probs=13.1

Q ss_pred             cCCCCCCEEEccCCccccccc
Q 005038           90 FNYSRLKIFNAENNEIKAEIT  110 (717)
Q Consensus        90 ~~l~~L~~L~l~~n~l~~~~~  110 (717)
                      ..+..++.+++|+|.+.....
T Consensus        27 ~~~d~~~evdLSGNtigtEA~   47 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAM   47 (388)
T ss_pred             HhhcceeEEeccCCcccHHHH
Confidence            345667777777776665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.07  E-value=5.7e-06  Score=73.40  Aligned_cols=110  Identities=22%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             CCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEc
Q 005038           21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA  100 (717)
Q Consensus        21 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  100 (717)
                      ...+||++|++...  ..|.++++|.+|.|++|+|+ .|.+..-..+++|+.|.|.+|.+..-.....+..+++|++|.+
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            33455665555422  23445556666666666665 4444233344556666666665553333334555555555555


Q ss_pred             cCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 005038          101 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN  158 (717)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  158 (717)
                      -+|++....                         +.-...+..+++|+.||+.+..-.
T Consensus       121 l~Npv~~k~-------------------------~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  121 LGNPVEHKK-------------------------NYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cCCchhccc-------------------------CceeEEEEecCcceEeehhhhhHH
Confidence            555543211                         122345667888999998876543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.03  E-value=7.3e-07  Score=82.38  Aligned_cols=113  Identities=20%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             cCCCCCCEEEccCCccccccchhhh----hCCCCCCEEEccCcccCccC-----cccccCCCCCCeEECcCCcCcccC--
Q 005038          240 GNMKFLQILDLSNNHLTGEIPEHLA----VGCVNLQFLALSNNNLQGHL-----FSRNFNLTNLQWLQLEGNRFVGEI--  308 (717)
Q Consensus       240 ~~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~--  308 (717)
                      .+-|.|++.....|++. ..+....    ..-.+|+++.+..|.|.-..     ...+..+.+|+.|||.+|.++...  
T Consensus       154 a~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         154 ADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             ccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence            34567778888777776 4443322    11246777777777765211     112234567777777777665322  


Q ss_pred             --cccccCCCCCCEEEccCCcCcCcCCccc----C--CCCCCCEEEccCCccc
Q 005038          309 --PQSLSKCSSLEGLYLNNNSLLGKIPRWL----G--NLTRLQYIIMPNNHLE  353 (717)
Q Consensus       309 --~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~--~l~~L~~L~l~~n~~~  353 (717)
                        ..++..-+.|+.|.+.+|-++......+    .  ..++|..|...+|.+.
T Consensus       233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence              1233344556666666665543332211    1  1345555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.01  E-value=1.5e-07  Score=92.29  Aligned_cols=234  Identities=19%  Similarity=0.158  Sum_probs=106.2

Q ss_pred             cCCCCCCEEEccCC-CCcccCChhhhhCCCCCCEEEccCCcCc-cc-CccCcCCCCCcCEEEccCCcCC-ccCCcccccc
Q 005038          142 YHQHDLEYVDLSHI-KMNGEFPNWLLENNTKLETLFLVNDSLA-GP-FRLPIHSHKRLRQLDVSNNNIR-GHIPVKIGDV  217 (717)
Q Consensus       142 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~-~~~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~  217 (717)
                      ..|++|+++++..| .+++..-+.+...+++|++++++.|... +. +..-..+++.++.+.+.+|.-. .+.-..+...
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~  266 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY  266 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence            35566666666663 3443333444455666666666665322 21 1112334445555544443211 0000111112


Q ss_pred             CCCCcEEECCCCCC-Ccc-CCccccCCCCCCEEEccCC-ccccccchhhhhCCCCCCEEEccCccc-CccCcccc-cCCC
Q 005038          218 LPSLYVFNNSMNAL-DGS-IPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLQFLALSNNNL-QGHLFSRN-FNLT  292 (717)
Q Consensus       218 l~~L~~L~l~~n~~-~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~i-~~~~~~~~-~~l~  292 (717)
                      ...+..+++..|.. +.. +...-..+..|++|+.+++ .+++.+-..+..++.+|+.+.++.++- +..-...+ .+++
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            23344444433321 111 0111123456666666654 333333444455566677766666542 21111111 2456


Q ss_pred             CCCeEECcCCcCccc--CcccccCCCCCCEEEccCCcCc-Cc----CCcccCCCCCCCEEEccCCccc-CCcccccCCCC
Q 005038          293 NLQWLQLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLL-GK----IPRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLD  364 (717)
Q Consensus       293 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~-~~----~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~  364 (717)
                      .|+.+++..+.....  +...-.+++.|+.+.++++... +.    ....-.++..|..+.++++... +.....+..++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            666666666543311  1112234566667766666432 11    0111233556666777666532 22333455666


Q ss_pred             CCCEEEccCCc
Q 005038          365 SLQILDISDNN  375 (717)
Q Consensus       365 ~L~~L~l~~n~  375 (717)
                      +|+.+++-+++
T Consensus       427 ~Leri~l~~~q  437 (483)
T KOG4341|consen  427 NLERIELIDCQ  437 (483)
T ss_pred             ccceeeeechh
Confidence            77777766654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=7.1e-06  Score=54.80  Aligned_cols=34  Identities=44%  Similarity=0.791  Sum_probs=12.2

Q ss_pred             CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038          563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  597 (717)
Q Consensus       563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i  597 (717)
                      |++|++++|+|+ .+|..++++++|+.|++++|++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            334444444443 2222333444444444444433

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.84  E-value=4.6e-07  Score=88.96  Aligned_cols=210  Identities=20%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             CccccEEEccCCCCCCCC-CchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEccCCcCcccCc--cCcCCCC
Q 005038          119 KFQLNTLSLSSNYGDGFI-FPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFR--LPIHSHK  194 (717)
Q Consensus       119 ~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~  194 (717)
                      +.+|++|+++|+....+. +......++.++.+.+.+|.-.+ +.-......+.-+..+++..|.......  ..-..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            335555555555444332 22233444555555555542110 0001111233345555554553221110  1112356


Q ss_pred             CcCEEEccCC-cCCccCCccccccCCCCcEEECCCCCCCccC-Cc-cccCCCCCCEEEccCCcccccc-chhhhhCCCCC
Q 005038          195 RLRQLDVSNN-NIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PS-SFGNMKFLQILDLSNNHLTGEI-PEHLAVGCVNL  270 (717)
Q Consensus       195 ~L~~L~ls~n-~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~~L  270 (717)
                      .|+.|+.+++ .++...-..++...++|+++.++.++--+.. -. --.+.+.|+.+++..+...... -.....+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            6777776664 3443344455556677777777776521110 00 1135677888888777443111 22333467888


Q ss_pred             CEEEccCcccCccC-----cccccCCCCCCeEECcCCcCcc-cCcccccCCCCCCEEEccCCcC
Q 005038          271 QFLALSNNNLQGHL-----FSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       271 ~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      +++.++++......     ...-..+..|+.+.|+++.... ..-+.+..+++|+.+++.+++-
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            88888877543111     1122356778888888887553 2234567788899988888753

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=4.1e-05  Score=68.10  Aligned_cols=104  Identities=27%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038          197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS  276 (717)
Q Consensus       197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~  276 (717)
                      +.+++.+.++.  .....+........+++++|.+..  -+.|..++.|.+|.+.+|+|+ .+...+...+++|+.|.+.
T Consensus        22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc--chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            44555555443  112233334456667777776653  233667777888888888887 6666666666777777777


Q ss_pred             CcccCccC-cccccCCCCCCeEECcCCcCc
Q 005038          277 NNNLQGHL-FSRNFNLTNLQWLQLEGNRFV  305 (717)
Q Consensus       277 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~  305 (717)
                      +|+|.... ...+..+++|++|.+-+|.+.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchh
Confidence            77765211 123334556666666555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=8.5e-05  Score=75.38  Aligned_cols=54  Identities=13%  Similarity=0.158  Sum_probs=23.2

Q ss_pred             CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                      +.+++.|++++|.++ .+|. +  .++|+.|.+++|.-....|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            345555555555444 2231 1  1245555555433222333322  134555555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=4.6e-06  Score=68.97  Aligned_cols=83  Identities=24%  Similarity=0.326  Sum_probs=66.2

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .|+..+|++|.+....+..-...+..+.|++++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++-.||..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            4778889999888544443445568888999999998 66777888999999999999987 777777788888888888


Q ss_pred             CCcCe
Q 005038          618 YNNLS  622 (717)
Q Consensus       618 ~N~l~  622 (717)
                      +|.+-
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            88766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.62  E-value=2.1e-05  Score=73.17  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=48.2

Q ss_pred             cccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCC--CCcccCCccccCCCCCCCEEECCCCcccCcCCcccccC
Q 005038           14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN   91 (717)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~   91 (717)
                      .+..+..|+.|++.+..++..  ..|-.+++|+.|++|.|  ++++.++. ...++++|+++++++|++...-....+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence            445555555555555555422  22445566666666666  44444433 33445666666666666653333344555


Q ss_pred             CCCCCEEEccCCccc
Q 005038           92 YSRLKIFNAENNEIK  106 (717)
Q Consensus        92 l~~L~~L~l~~n~l~  106 (717)
                      +.+|..|++..|..+
T Consensus       115 l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVT  129 (260)
T ss_pred             hcchhhhhcccCCcc
Confidence            556666666555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.56  E-value=0.00021  Score=61.86  Aligned_cols=122  Identities=19%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038          238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS  317 (717)
Q Consensus       238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  317 (717)
                      +|.++++|+.+.+.. .+. .++...+.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345555555555553 343 455555555555666655543 4444444555555556655544 233233344555556


Q ss_pred             CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCC
Q 005038          318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL  366 (717)
Q Consensus       318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  366 (717)
                      ++.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666665443 332333445444 555555544 2232344445444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=3.9e-05  Score=84.80  Aligned_cols=87  Identities=25%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             CCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccc---hh---hh
Q 005038          192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIP---EH---LA  264 (717)
Q Consensus       192 ~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~---~~  264 (717)
                      ++++|+.||+|+++++. +  ..-+.+++|++|.+.+-.+.. ..-..+.++++|++||+|..+.. ..+   ..   ..
T Consensus       171 sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~  246 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISN-L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECG  246 (699)
T ss_pred             ccCccceeecCCCCccC-c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhc
Confidence            34455555555554441 1  111224445554444433321 11123455666666666655433 111   11   11


Q ss_pred             hCCCCCCEEEccCcccCc
Q 005038          265 VGCVNLQFLALSNNNLQG  282 (717)
Q Consensus       265 ~~~~~L~~L~L~~n~i~~  282 (717)
                      ..+|+|+.||.|++.+..
T Consensus       247 ~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  247 MVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccCccccEEecCCcchhH
Confidence            135667777776665553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=2e-05  Score=87.12  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CCCCeeeCCCCCCC-CCcchhcc-CCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCC
Q 005038           19 VHLQELYIASNDLR-GSLPWCMA-NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLK   96 (717)
Q Consensus        19 ~~L~~L~Ls~n~i~-~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~   96 (717)
                      .+|++||+++...- ..=|..++ .+|.|++|.+++-.+...=-...+.++++|..||+|+.+++.-   ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            46778888775432 12233343 4688888888776553110012456678888888888777622   3466777777


Q ss_pred             EEEccCCcccccccccccccCCCccccEEEccCCCCCCCC-Cc----hhhcCCCCCCEEEccCCCCcccCChhhhhCCCC
Q 005038           97 IFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI-FP----KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTK  171 (717)
Q Consensus        97 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  171 (717)
                      .|.+.+-.+..  ......+..+++|+.||+|........ +.    +.-..+++|+.||.++..+.+.+-+.+....++
T Consensus       199 ~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  199 VLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            77766544432  111122444556666666443332221 01    111235566666666666655544444444444


Q ss_pred             CCEEEc
Q 005038          172 LETLFL  177 (717)
Q Consensus       172 L~~L~l  177 (717)
                      |+.+.+
T Consensus       277 L~~i~~  282 (699)
T KOG3665|consen  277 LQQIAA  282 (699)
T ss_pred             Hhhhhh
Confidence            444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.47  E-value=0.00027  Score=61.18  Aligned_cols=118  Identities=22%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038          218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  297 (717)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  297 (717)
                      +++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+.++++++.+.+.. .+.......|..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            33444444432 233333444666666666666654 44 55666666666677776654 4443444555666777777


Q ss_pred             ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCC
Q 005038          298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL  342 (717)
Q Consensus       298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  342 (717)
                      ++..+ +.......|..+ +++.+.+.. .+.......|.++++|
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77554 443444556665 677776654 3333444555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.00045  Score=70.27  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             hhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC
Q 005038          432 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  477 (717)
Q Consensus       432 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  477 (717)
                      +..+.+++.|++++|.++.. |.   -.++|+.|.+++|.-....|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP   89 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLP   89 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCC
Confidence            45578999999999988844 41   23479999999865433444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00032  Score=65.50  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=63.9

Q ss_pred             cccCCCCCCeeeCCCC--CCCCCcchhccCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECCCCcccCc--CCccc
Q 005038           14 GLCSLVHLQELYIASN--DLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIP--ISLEP   88 (717)
Q Consensus        14 ~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~~   88 (717)
                      .|-.+++|++|.+|.|  ++.+.++-....+++|++|++|+|+|. .+.. .....+.+|..|++.+|.-+.-  .-...
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v  138 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKV  138 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence            4778899999999999  777666666677899999999999986 2222 2367888999999999876531  11124


Q ss_pred             ccCCCCCCEEEc
Q 005038           89 LFNYSRLKIFNA  100 (717)
Q Consensus        89 ~~~l~~L~~L~l  100 (717)
                      |.-+++|++|+-
T Consensus       139 f~ll~~L~~LD~  150 (260)
T KOG2739|consen  139 FLLLPSLKYLDG  150 (260)
T ss_pred             HHHhhhhccccc
Confidence            556778887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.76  E-value=0.00012  Score=79.85  Aligned_cols=64  Identities=31%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             CCCCCCEEEccCCc-cccccchhhhhCCCCCCEEEccCcc-cCccCccc-ccCCCCCCeEECcCCcC
Q 005038          241 NMKFLQILDLSNNH-LTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSR-NFNLTNLQWLQLEGNRF  304 (717)
Q Consensus       241 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l  304 (717)
                      .+++|+.|+++.+. +++..-..+...|++|++|.+.++. ++...... ...++.|++|+++.|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555555555554 4433333444445566666555444 33211111 12445566666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.10  E-value=0.0007  Score=73.91  Aligned_cols=180  Identities=21%  Similarity=0.074  Sum_probs=90.2

Q ss_pred             CCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCC----CchhhcCCCCCCEEEccCCC-CcccCChhh
Q 005038           91 NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI----FPKFLYHQHDLEYVDLSHIK-MNGEFPNWL  165 (717)
Q Consensus        91 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~  165 (717)
                      .++.|+.+.+..+.-..... .......+++|++|+++.++.....    .......+++|+.++++.+. +++..-..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            35566666655542211100 1122344456666666432111111    11234455777777777776 554444555


Q ss_pred             hhCCCCCCEEEccCCc-CcccCc-cCcCCCCCcCEEEccCCcCC-ccCCccccccCCCCcEEECCCCCCCccCCccccCC
Q 005038          166 LENNTKLETLFLVNDS-LAGPFR-LPIHSHKRLRQLDVSNNNIR-GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNM  242 (717)
Q Consensus       166 ~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  242 (717)
                      ...+++|+.|.+.+|. +++... .....++.|++|+++++... +..-..+...+++++.+.+....          .+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GC  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CC
Confidence            4557778888877676 443222 22345677888888876543 11111223335555554432211          14


Q ss_pred             CCCCEEEccCCccc--cccchhhhhCCCCCCEEEccCcccC
Q 005038          243 KFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNNNLQ  281 (717)
Q Consensus       243 ~~L~~L~Ls~n~l~--~~~~~~~~~~~~~L~~L~L~~n~i~  281 (717)
                      +.++.+.+......  +.........+++++.+.+..+.+.
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~  375 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS  375 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence            44555555443221  1344445556777777777776633

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.00019  Score=67.09  Aligned_cols=83  Identities=25%  Similarity=0.290  Sum_probs=54.6

Q ss_pred             CCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCE
Q 005038           18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI   97 (717)
Q Consensus        18 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~   97 (717)
                      +.+.+.|+.=++.++++  ....+++.|+.|.||=|+|+ ++..  +..+++|++|+|..|.|........+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            55666777777777654  23346677777777777776 5554  7777777777777777764444445566777777


Q ss_pred             EEccCCcc
Q 005038           98 FNAENNEI  105 (717)
Q Consensus        98 L~l~~n~l  105 (717)
                      |-|..|.-
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            76666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.00054  Score=64.15  Aligned_cols=94  Identities=23%  Similarity=0.232  Sum_probs=66.9

Q ss_pred             EEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCC
Q 005038          520 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLN  598 (717)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~  598 (717)
                      +.+.+.++..+.....++.|+.|.||-|+++...  .+..+++|++|+|..|.|.++.. .-+.++++|+.|-|..|+-.
T Consensus        24 LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   24 LNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            4445555555555566778888888888887543  47788888888888888874322 23567888888888888887


Q ss_pred             ccCch-----hhcCCCCCCEEe
Q 005038          599 GKIPH-----QLVELKTLEVFS  615 (717)
Q Consensus       599 ~~~p~-----~~~~l~~L~~L~  615 (717)
                      +.-+.     .+..+++|+.||
T Consensus       102 ~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  102 GEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccchhHHHHHHHHcccchhcc
Confidence            65553     355678888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.84  E-value=0.01  Score=32.74  Aligned_cols=12  Identities=58%  Similarity=0.769  Sum_probs=5.1

Q ss_pred             CCeEeCCCcccC
Q 005038          563 IQTLNLSHNNLT  574 (717)
Q Consensus       563 L~~L~Ls~n~l~  574 (717)
                      |++|+|++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.70  E-value=0.0099  Score=32.78  Aligned_cols=16  Identities=63%  Similarity=0.762  Sum_probs=8.8

Q ss_pred             CCEEeCCCCCCcccCCc
Q 005038           45 LRILDVSSNQLTGSISS   61 (717)
Q Consensus        45 L~~L~Ls~n~i~~~i~~   61 (717)
                      |++||+++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            455555555555 5554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.75  E-value=0.037  Score=28.21  Aligned_cols=13  Identities=62%  Similarity=0.882  Sum_probs=4.9

Q ss_pred             CCCEEeCCCCCCc
Q 005038           44 SLRILDVSSNQLT   56 (717)
Q Consensus        44 ~L~~L~Ls~n~i~   56 (717)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.59  E-value=0.1  Score=30.04  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=12.3

Q ss_pred             CCCCEEeCCCCCCcccCCcccc
Q 005038           43 TSLRILDVSSNQLTGSISSSPL   64 (717)
Q Consensus        43 ~~L~~L~Ls~n~i~~~i~~~~~   64 (717)
                      ++|++|+|++|.++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.59  E-value=0.1  Score=30.04  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=12.3

Q ss_pred             CCCCEEeCCCCCCcccCCcccc
Q 005038           43 TSLRILDVSSNQLTGSISSSPL   64 (717)
Q Consensus        43 ~~L~~L~Ls~n~i~~~i~~~~~   64 (717)
                      ++|++|+|++|.++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.94  E-value=0.0026  Score=58.08  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=78.5

Q ss_pred             eeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc
Q 005038            9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP   88 (717)
Q Consensus         9 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~   88 (717)
                      +||-..+..+...+.||++.|++. .+-..|+.++.|..||++.|.+. .+|. .+..+..++.+++.+|..+ ..| ..
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~-~~p-~s  106 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS-QQP-KS  106 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh-hCC-cc
Confidence            777778899999999999999887 44556778889999999999997 7777 7888899999999988876 344 46


Q ss_pred             ccCCCCCCEEEccCCcccc
Q 005038           89 LFNYSRLKIFNAENNEIKA  107 (717)
Q Consensus        89 ~~~l~~L~~L~l~~n~l~~  107 (717)
                      +...+++++++..++.+..
T Consensus       107 ~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             ccccCCcchhhhccCcchH
Confidence            8899999999999887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.40  E-value=0.28  Score=28.23  Aligned_cols=14  Identities=50%  Similarity=0.759  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCC
Q 005038          585 KHVESLDLSNNKLN  598 (717)
Q Consensus       585 ~~L~~L~L~~N~i~  598 (717)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.40  E-value=0.28  Score=28.23  Aligned_cols=14  Identities=50%  Similarity=0.759  Sum_probs=8.3

Q ss_pred             CCCCEEECCCCcCC
Q 005038          585 KHVESLDLSNNKLN  598 (717)
Q Consensus       585 ~~L~~L~L~~N~i~  598 (717)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>TIGR00864 PCC polycystin cation channel protein

Probab=90.27  E-value=0.17  Score=63.14  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             ECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          591 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       591 ~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~   36 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG   36 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence            466777775555666677777777777777776543

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.32  E-value=0.011  Score=54.22  Aligned_cols=84  Identities=19%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             ccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038          536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  615 (717)
Q Consensus       536 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~  615 (717)
                      ....+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            346788999999887 34456777888999999999998 88888999999999999999887 7888999999999999


Q ss_pred             ccCCcCe
Q 005038          616 VAYNNLS  622 (717)
Q Consensus       616 l~~N~l~  622 (717)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999865

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.96  E-value=0.0038  Score=66.24  Aligned_cols=87  Identities=22%  Similarity=0.236  Sum_probs=38.3

Q ss_pred             CCCCCeEECcCCcCcccC----cccccCCCC-CCEEEccCCcCcCc----CCcccCCC-CCCCEEEccCCcccCCc----
Q 005038          291 LTNLQWLQLEGNRFVGEI----PQSLSKCSS-LEGLYLNNNSLLGK----IPRWLGNL-TRLQYIIMPNNHLEGPI----  356 (717)
Q Consensus       291 l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~~~~~~----  356 (717)
                      ..++++|++++|.++...    ...+...+. +..+++..|.+.+.    ....+..+ ..++.++++.|.+.+..    
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            445555555555544211    112223333 44455555555432    11222233 44555555555554322    


Q ss_pred             ccccCCCCCCCEEEccCCcCc
Q 005038          357 PVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       357 ~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ...+..++.++++.++.|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence            222334445555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.16  E-value=0.16  Score=45.88  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=13.7

Q ss_pred             cEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038          222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNN  253 (717)
Q Consensus       222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n  253 (717)
                      +.++-++..|...--+.+.+++.++.|.+.++
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            33444444333332333444455555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.98  E-value=0.59  Score=26.23  Aligned_cols=14  Identities=29%  Similarity=0.430  Sum_probs=5.4

Q ss_pred             CCCcEEEcCCCccc
Q 005038          436 SQLSHLILGHNNLE  449 (717)
Q Consensus       436 ~~L~~L~L~~n~l~  449 (717)
                      ++|++|++++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444444

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=80.87  E-value=0.028  Score=59.81  Aligned_cols=92  Identities=26%  Similarity=0.238  Sum_probs=57.3

Q ss_pred             ccCCCCCCEEEccCCccccccchh---hhhCCCC-CCEEEccCcccCccC----cccccCC-CCCCeEECcCCcCcccCc
Q 005038          239 FGNMKFLQILDLSNNHLTGEIPEH---LAVGCVN-LQFLALSNNNLQGHL----FSRNFNL-TNLQWLQLEGNRFVGEIP  309 (717)
Q Consensus       239 l~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~~-L~~L~L~~n~i~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~~  309 (717)
                      +....++++|++++|.++...-..   .....+. +..+++.+|.+.+..    ...+..+ ..+++++++.|.++....
T Consensus       200 ~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~  279 (478)
T KOG4308|consen  200 ASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV  279 (478)
T ss_pred             hcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence            345677788888887766221111   1112233 666888888776431    1223334 667888999988876433


Q ss_pred             ----ccccCCCCCCEEEccCCcCcC
Q 005038          310 ----QSLSKCSSLEGLYLNNNSLLG  330 (717)
Q Consensus       310 ----~~~~~l~~L~~L~L~~n~~~~  330 (717)
                          ..+..++.++++.+++|.+.+
T Consensus       280 ~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  280 RDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHhhhHHHHHhhcccCcccc
Confidence                345667789999999988764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.36  E-value=1.6  Score=25.18  Aligned_cols=14  Identities=43%  Similarity=0.624  Sum_probs=7.6

Q ss_pred             CCCCEEeCCCCCCc
Q 005038           43 TSLRILDVSSNQLT   56 (717)
Q Consensus        43 ~~L~~L~Ls~n~i~   56 (717)
                      .+|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	717
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-54
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-24
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-53
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 207/710 (29%), Positives = 318/710 (44%), Gaps = 101/710 (14%)
Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGS 58
           +S+  +NG V   G      L  L ++ N L G +     + + + L+ L+VSSN L   
Sbjct: 84  LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 59  ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLI 116
              S  + L S+E L LS N       +  + +     LK      N+I  ++  S  + 
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 200
Query: 117 APKFQLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                L  L +SS N+  G     FL     L+++D+S  K++G+F +  +   T+L+ L
Sbjct: 201 ----NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLL 252
Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
            + ++   GP  +P    K L+ L ++ N   G IP  +     +L   + S N   G++
Sbjct: 253 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 236 PSSFG-------------------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
           P  FG                          M+ L++LDLS N  +GE+PE L     +L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 271 QFLALSNNNLQGHLFSRNFNLT-----NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
             L LS+NN  G +     NL       LQ L L+ N F G+IP +LS CS L  L+L+ 
Sbjct: 371 LTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH 385
           N L G IP  LG+L++L+ + +  N LEG IP E   + +L+ L +  N+++G +PS   
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
                                   NC++L  + LS NRL G IP W+  L  L+ L L +
Sbjct: 488 ------------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 446 NNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDE 497
           N+  G +                    +G IP            N    + Y    +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 498 QFEIFFSIEGHQGFLEKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDL 544
           + E      G    LE Q   + ++   +T+N     + +Y G              LD+
Sbjct: 584 KKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
           S N L G+IP +IG++  +  LNL HN+++GSIP    +L+ +  LDLS+NKL+G+IP  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 605 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
           +  L  L    ++ NNLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 289
           ++GS+ S F     L  LDLS N L+G +    ++G C  L+FL +S+N L         
Sbjct: 89  INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 346
                         F G++   L K +SLE L L+ NS+ G  +  W+       L+++ 
Sbjct: 140 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
           +  N + G + V  C   +L+ LD+S NN S  +P      +++ + +S N L G   R 
Sbjct: 185 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 241
Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 465
               C+ L  L++S N+  G IP     L  L +L L  N   GE+              
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 466 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 519
                  +G +PP F + +L ES +   N+ S +   +    + G +       + + E+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 520 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 562
            E  T   A +         + G +L        + L  L L  N   G IPP + N + 
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           + +L+LS N L+G+IPS+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 623 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 655
           GEIP   +     N  S   N     +P  I R
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 207/708 (29%), Positives = 319/708 (45%), Gaps = 97/708 (13%)
Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGS 58
           +S+  +NG V   G      L  L ++ N L G +     + + + L+ L+VSSN L   
Sbjct: 81  LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 59  ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLI 116
              S  + L S+E L LS N       +  + +     LK      N+I  ++  S  + 
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 197
Query: 117 APKFQLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                L  L +SS N+  G     FL     L+++D+S  K++G+F +  +   T+L+ L
Sbjct: 198 ----NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLL 249
Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
            + ++   GP  +P    K L+ L ++ N   G IP  +     +L   + S N   G++
Sbjct: 250 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 236 PSSFG-------------------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
           P  FG                          M+ L++LDLS N  +GE+PE L     +L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 271 QFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
             L LS+NN  G +     +N   T LQ L L+ N F G+IP +LS CS L  L+L+ N 
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 328 LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL 387
           L G IP  LG+L++L+ + +  N LEG IP E   + +L+ L +  N+++G +PS     
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-- 484
Query: 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
                                 NC++L  + LS NRL G IP W+  L  L+ L L +N+
Sbjct: 485 ----------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 448 LEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQF 499
             G +                    +G IP            N    + Y    +   + 
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 500 EIFFSIEGHQGFLEKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSC 546
           E      G    LE Q   + ++   +T+N     + +Y G              LD+S 
Sbjct: 583 E----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
           N L G+IP +IG++  +  LNL HN+++GSIP    +L+ +  LDLS+NKL+G+IP  + 
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 607 ELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
            L  L    ++ NNLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 289
           ++GS+ S F     L  LDLS N L+G +    ++G C  L+FL +S+N L         
Sbjct: 86  INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 346
                         F G++   L K +SLE L L+ NS+ G  +  W+       L+++ 
Sbjct: 137 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
           +  N + G + V  C   +L+ LD+S NN S  +P      +++ + +S N L G   R 
Sbjct: 182 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 238
Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 465
               C+ L  L++S N+  G IP     L  L +L L  N   GE+              
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 466 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 519
                  +G +PP F + +L ES +   N+ S +   +    + G +       + + E+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 520 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 562
            E  T   A +         + G +L        + L  L L  N   G IPP + N + 
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           + +L+LS N L+G+IPS+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 623 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 655
           GEIP   +     N  S   N     +P  I R
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 59/231 (25%)
Query: 474 GPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 532
           GPIPP     T LH  Y   ++       F S        + +     +F+   ++    
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNALSGTLP 142
Query: 533 GKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGSIPSTFSNL----- 584
             + SL  L G+    N++ G IP   G+ +++ T + +S N LTG IP TF+NL     
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 585 -----------------------------------------KHVESLDLSNNKLNGKIPH 603
                                                    K++  LDL NN++ G +P 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 604 QLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
            L +LK L   +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 553 IPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
           IP  + NL  +  L +   NNL G IP   + L  +  L +++  ++G IP  L ++KTL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 612 EVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650
                +YN LSG +P   +        +++GN     +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
           N+++LAL  N L  H  S    LTNL +L L GN+          K ++L+ L L  N L
Sbjct: 64  NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL 387
                     LT L Y+ + +N L+      F +L +L  LD+ DNN   SLP   F  L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKL 180
Query: 388 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSH 440
           + +KQ+ L+ N L   +  G F   +SL  + L  N  + +  D      W+   SQ   
Sbjct: 181 TQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPG 236
Query: 441 LILGHNNLEGE 451
           L+ G+ NL+ +
Sbjct: 237 LVFGYLNLDPD 247

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHL 394
           L  LT L Y+I+  N L+      F +L +L+ L + +N +       F  L+ +  ++L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 449
           + N L   L +G F   ++L  LDLSYN+L  S+P+ V D L+QL  L L  N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 17  SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 73
           SL++L+ELY+ SN L G+LP     ++T L +LD+ +NQLT   S+    LVHL   E  
Sbjct: 62  SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
           M  N   ++P  +E L + + L +   + N++K+
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 229 NALDGSIPSSFGNMKFLQILDLSNN--------------------HLTG----EIPEHLA 264
           NAL G   ++F  +  L+ LDLS+N                    HL      E+   L 
Sbjct: 65  NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 324
            G   LQ+L L +NNLQ    +   +L NL  L L GNR       +     SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDN 374
            N +    P    +L RL  + +  N+L   +P E    L SLQ L ++DN
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	717
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-157
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-121
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  471 bits (1215), Expect = e-157
 Identities = 183/672 (27%), Positives = 299/672 (44%), Gaps = 49/672 (7%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 71
           G      L  L ++ N L G +     + + + L+ L+VSSN L      S  + L S+E
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 72  ELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
            L LS N       +          LK      N+I  ++  S  +      L  L +SS
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSS 209

Query: 130 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
           N     I P FL     L+++D+S  K++G+F   +    T+L+ L + ++   GP  +P
Sbjct: 210 NNFSTGI-P-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP--IP 264

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
               K L+ L ++ N   G IP  +     +L   + S N   G++P  FG+   L+ L 
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEI 308
           LS+N+ +GE+P    +    L+ L LS N   G L     NL+ +L  L L  N F G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 309 PQSLSKC--SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
             +L +   ++L+ LYL NN   GKIP  L N + L  + +  N+L G IP     L  L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           + L +  N + G +P     + +++ + L  N L G++      NC++L  + LS NRL 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLT 503

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 485
           G IP W+  L  L+ L L +N+  G +  +L +   L  LDL+ N  +G IP      + 
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
             + +N  +      I       +         + EF       + +   LS  +  +++
Sbjct: 564 KIA-ANFIAGKRYVYIKNDGMKKECHG---AGNLLEFQGIRSEQLNR---LSTRNPCNIT 616

Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
                GH  P   N   +  L++S+N L+G IP    ++ ++  L+L +N ++G IP ++
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 606 VELKTLEVFSVAYNNLSGEIPEWKA-----------------------QFATFNESSYEG 642
            +L+ L +  ++ N L G IP+  +                       QF TF  + +  
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736

Query: 643 NTFLCGLPLPIC 654
           N  LCG PLP C
Sbjct: 737 NPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  378 bits (974), Expect = e-121
 Identities = 163/643 (25%), Positives = 266/643 (41%), Gaps = 108/643 (16%)

Query: 16  CSLVHLQELYIASNDLR---GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 72
           C    +  + ++S  L     ++   + ++T L  L +S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 73  LMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
           L LS N     +      L + S LK                            L++SSN
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLK---------------------------FLNVSSN 136

Query: 131 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN--TKLETLFLVNDSLAGPFRL 188
             D           + LE +DLS   ++G      + ++   +L+ L +  + ++G   +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
            +     L  LDVS+NN    IP  +GD   +L   + S N L G    +      L++L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL-FSRNFNLTNLQWLQLEGNRFVGE 307
           ++S+N   G IP        +LQ+L+L+ N   G +    +     L  L L GN F G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DS 365
           +P     CS LE L L++N+  G++P   L  +  L+ + +  N   G +P     L  S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 366 LQILDISDNNISGSLPSCF---HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           L  LD+S NN SG +          ++++++L  N   G++   T  NCS LV+L LS+N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN 428

Query: 423 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
            L+G+IP  +  LS+L  L L  N LEGE+  +L  +  L+ L L  N+L G IP    N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
                                                                 + L+ +
Sbjct: 489 -----------------------------------------------------CTNLNWI 495

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
            LS N+L G IP  IG L  +  L LS+N+ +G+IP+   + + +  LDL+ N  NG IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 603 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTF 645
             + +        +A N ++G+   +        E    GN  
Sbjct: 556 AAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  209 bits (534), Expect = 5e-58
 Identities = 113/508 (22%), Positives = 184/508 (36%), Gaps = 125/508 (24%)

Query: 1   MSSCEVNGVV-RSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSI 59
           +SS   +G +  +        LQELY+ +N   G +P  ++N + L  L +S N L+G+I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 60  SSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA 117
            SS L  L+ + +L L  N  +  IP     L     L+    + N++  EI        
Sbjct: 435 PSS-LGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEI-------- 482

Query: 118 PKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL 177
                               P  L +  +L ++ LS+ ++ GE P W +     L  L L
Sbjct: 483 --------------------PSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKL 521

Query: 178 VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237
                                                            S N+  G+IP+
Sbjct: 522 -------------------------------------------------SNNSFSGNIPA 532

Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
             G+ + L  LDL+ N   G IP       +  Q   ++ N + G  +    N    +  
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPA-----AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 298 QLEGN--RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355
              GN   F G   + L++ S+     + +    G       N   + ++ M  N L G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
           IP E   +  L IL++  N+ISGS+P                            +   L 
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPD------------------------EVGDLRGLN 683

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS----NNN 471
            LDLS N+L+G IP  +  L+ L+ + L +NNL G +     E+ Q +    +    N  
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP----EMGQFETFPPAKFLNNPG 739

Query: 472 LHG-PIPPCFDNTTLHESYSNSSSPDEQ 498
           L G P+P C  +     ++   S     
Sbjct: 740 LCGYPLPRCDPSNADGYAHHQRSHHHHH 767

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (674), Expect = 3e-78
 Identities = 117/654 (17%), Positives = 209/654 (31%), Gaps = 110/654 (16%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
                +L EL++ SN ++           +L  LD+S N L+ +   +  V L +++EL+
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELL 151

Query: 75  LSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
           LSNN  Q +      +F  S LK     +N+IK                           
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIK--------------------------- 184

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
               P   +    L  + L+++++       L                          ++
Sbjct: 185 -EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LAN 221

Query: 194 KRLRQLDVSNNNIRGHIPVKIGD-VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
             +R L +SN+ +              +L + + S N L+     SF  +  L+   L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 253 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
           N++       L  G  N+++L L                 +     +           S 
Sbjct: 282 NNIQHLFSHSLH-GLFNVRYLNLKR---------------SFTKQSISLASLPKIDDFSF 325

Query: 313 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE----FCQLDSLQI 368
                LE L + +N + G        L  L+Y+ + N+                   L I
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 369 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
           L+++ N IS      F  L  ++ + L  N +  +L    +    ++  + LSYN+    
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 428 IPDWVDGLSQLSHLILGHNNLEG--EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN--- 482
             +    +  L  L+L    L+           L  L +LDLSNNN+        +    
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 483 -TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541
              L   ++N +   +                                IY  K LS L  
Sbjct: 506 LEILDLQHNNLARLWKH-------------------------ANPGGPIYFLKGLSHLHI 540

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
           L+L  N           +L  ++ ++L  NNL     S F+N   ++SL+L  N +    
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 602 PHQL-VELKTLEVFSVAYNNLSGEIP--EWKAQFA--TFNESSYEGNTFLCGLP 650
                   + L    + +N          W   +   T        + +LC  P
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  262 bits (671), Expect = 7e-78
 Identities = 113/630 (17%), Positives = 195/630 (30%), Gaps = 111/630 (17%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L  L+ L +  N+L        A  T+L  L + SN +   I ++P V   ++  L 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD 127

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           LS+N       L        L+     NN+I+  +      I     L  L LSSN    
Sbjct: 128 LSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
           F  P   +    L  + L+++++       L                          ++ 
Sbjct: 186 FS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANT 222

Query: 195 RLRQLDVSNNNIRGHIPVKIGD-VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +R L +SN+ +              +L + + S N L+     SF  +  L+   L  N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
           ++       L  G  N+++L L  +                    +           S  
Sbjct: 283 NIQHLFSHSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQ 326

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE----FCQLDSLQIL 369
               LE L + +N + G        L  L+Y+ + N+                   L IL
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 370 DISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
           +++ N IS      F  L  ++ + L  N +  +L    +    ++  + LSYN+     
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 429 PDWVDGLSQLSHLILGHNNLEG--EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486
            +    +  L  L+L    L+           L  L +LDLSNNN+        +     
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG---- 502

Query: 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 546
                                                            L  L  LDL  
Sbjct: 503 -------------------------------------------------LEKLEILDLQH 513

Query: 547 NKL--------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
           N L         G     +  L+ +  LNL  N         F +L  ++ +DL  N LN
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
                      +L+  ++  N ++    + 
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  253 bits (648), Expect = 1e-74
 Identities = 129/614 (21%), Positives = 205/614 (33%), Gaps = 92/614 (14%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            S  + D S  +LT      P    T+I  L L++N  +   +      YS+L   +   
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
           N I     E          L  L+L  N        K      +L  + L    +     
Sbjct: 59  NTISKLEPEL---CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSL 221
           N        L TL L ++ L+          + L++L +SNN I+     ++      SL
Sbjct: 115 N-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN--LQFLALSNNN 279
                S N +    P  F  +  L  L L+N  L   + E L +   N  ++ L+LSN+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 280 LQG--HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
           L    +        TNL  L L  N        S +    LE  +L  N++       L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 338 NLTRLQYIIMPNN---------HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 387
            L  ++Y+ +  +          L       F  L  L+ L++ DN+I G   + F  L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 388 SIKQVHLSKNMLHGQ-LKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG 444
           ++K + LS +    + L   TF +   S L  L+L+ N+++    D    L  L  L LG
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 445 HNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 503
            N +  E++ Q    L  +  + LS N         F                       
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL--------------------- 452

Query: 504 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLT 561
                                           +  L  L L    L  +   P     L 
Sbjct: 453 --------------------------------VPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--------GKIPHQLVELKTLEV 613
            +  L+LS+NN+          L+ +E LDL +N L         G   + L  L  L +
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 614 FSVAYNNLSGEIPE 627
            ++  N       E
Sbjct: 541 LNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (565), Expect = 7e-63
 Identities = 105/504 (20%), Positives = 175/504 (34%), Gaps = 82/504 (16%)

Query: 147 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 206
            E  D SH+K+  + P+ L  N   +  L L ++ L          + +L  LDV  N I
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 207 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 266
               P      LP L V N   N L      +F     L  L L +N +           
Sbjct: 62  SKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-K 119

Query: 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLYLN 324
             NL  L LS+N L          L NLQ L L  N+      + L     SSL+ L L+
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC---QLDSLQILDISDNNISGSLP 381
           +N +    P     + RL  + + N  L   +  + C      S++ L +S++ +S +  
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 382 SCFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 438
           + F  L   ++  + LS N L+  +   +F     L    L YN +       + GL  +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 439 SHLILGHNNLEGEVSVQ---------LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 489
            +L L  +  +  +S+             L  L+ L++ +N++ G     F         
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------- 351

Query: 490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 549
                                                         L  L  L LS +  
Sbjct: 352 ----------------------------------------------LINLKYLSLSNSFT 365

Query: 550 -IGHIPPQIG---NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ- 604
            +  +  +       + +  LNL+ N ++      FS L H+E LDL  N++  ++  Q 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 605 LVELKTLEVFSVAYNNLSGEIPEW 628
              L+ +    ++YN         
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (551), Expect = 6e-61
 Identities = 108/630 (17%), Positives = 188/630 (29%), Gaps = 164/630 (26%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV--HLTSIE 71
            + +   L++L ++SN ++   P C   +  L  L +++ QL  S++    +    TSI 
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 72  ELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
            L LSN+        +   L  ++ L + +   N +                        
Sbjct: 226 NLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLN----------------------- 261

Query: 130 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
                 +          LEY  L +  +   F +                          
Sbjct: 262 -----VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS------------------------- 291

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           +H    +R L++  +  +  I                S+ +L      SF  +K L+ L+
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSI----------------SLASLPKIDDFSFQWLKCLEHLN 335

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS----RNFNLTNLQWLQLEGNRFV 305
           + +N + G        G +NL++L+LSN+       +     +   + L  L L  N+  
Sbjct: 336 MEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
                + S    LE L L  N +  ++       L  +  I +  N         F  + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
           SLQ L +    +     S                         F    +L  LDLS N +
Sbjct: 455 SLQRLMLRRVALKNVDSSP----------------------SPFQPLRNLTILDLSNNNI 492

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLE--------GEVSVQLCELNQLQLLDLSNNNLHGPI 476
                D ++GL +L  L L HNNL         G     L  L+ L +L+L +N      
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 536
              F +                                                     L
Sbjct: 553 VEVFKD-----------------------------------------------------L 559

Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS-NLKHVESLDLSNN 595
             L  +DL  N L         N   +++LNL  N +T      F    +++  LD+  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 625
             +         +  +         LS   
Sbjct: 620 PFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 1e-22
 Identities = 50/273 (18%), Positives = 83/273 (30%), Gaps = 49/273 (17%)

Query: 12  SQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI 70
           S     L HL+ L +  N++   L       + ++  + +S N+      +S    + S+
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSL 456

Query: 71  EELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
           + LML     + +  S  P      L I                           L LS+
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTI---------------------------LDLSN 489

Query: 130 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
           N          L     LE +DL H  +                   L   +  G     
Sbjct: 490 NNIANIN-DDMLEGLEKLEILDLQHNNLA-----------------RLWKHANPGGPIYF 531

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           +     L  L++ +N           D L  L + +  +N L+    S F N   L+ L+
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
           L  N +T    +       NL  L +  N    
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  246 bits (631), Expect = 9e-73
 Identities = 108/629 (17%), Positives = 199/629 (31%), Gaps = 89/629 (14%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
             + L ++ N LR    +   +   L++LD+S  ++      +    L+ +  L+L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 80  FQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
            Q     +   L +   L+   A    + +        I     L  L+++ N    F  
Sbjct: 88  IQSLALGAFSGLSS---LQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKL 141

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS---HK 194
           P++  +  +LE++DLS  K+   +    L    ++  L L  D    P            
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQIL 248
           RL +L + NN    ++       L  L V    +              S+   +  L I 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 249 DLSNNHL---TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305
           +    +L     +I +       N+   +L +  ++             Q L+L   +F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG 317

Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL--EGPIPVEFCQL 363
                 L     L        +          +L  L+++ +  N L  +G         
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 364 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
            SL+ LD+S N +     +      ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
              +     +GLS L  L +  N+ +         EL  L  LDLS   L    P  F++
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
                                                                LS L  L
Sbjct: 493 -----------------------------------------------------LSSLQVL 499

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL-KHVESLDLSNNKLNGKI 601
           ++S N            L  +Q L+ S N++  S      +    +  L+L+ N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 602 PHQ--LVELKTLEVFSVAYNNLSGEIPEW 628
            HQ  L  +K      V    +    P  
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  228 bits (583), Expect = 5e-66
 Identities = 107/608 (17%), Positives = 197/608 (32%), Gaps = 108/608 (17%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
             SL HL  L +  N ++       + ++SL+ L      L    +   + HL +++EL 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELN 130

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITES-HSLIAPKFQLNTLSLSSNYGD 133
           +++N  Q     E   N + L+  +  +N+I++        L        +L LS N  +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                 F   +  L  + L +   +       ++    LE   LV         L     
Sbjct: 191 FIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 194 ---KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
              + L  L +    +                     ++     I   F  +  +    L
Sbjct: 249 SALEGLCNLTIEEFRL-------------------AYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNN-------------------NLQGHLFSRNFNL 291
            +  +               Q L L N                    + +G       +L
Sbjct: 290 VSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 292 TNLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            +L++L L  N   F G   QS    +SL+ L L+ N ++  +      L +L+++   +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 350 NHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGT 407
           ++L+       F  L +L  LDIS  +   +    F+ L S++ + ++ N          
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467
           F    +L  LDLS  +L    P   + LS L  L + HNN     +     LN LQ+LD 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 527
           S N++         +                                             
Sbjct: 526 SLNHIMTSKKQELQH--------------------------------------------- 540

Query: 528 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQ--IGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
                    S L+ L+L+ N        Q  +  +   + L +    +  + PS    + 
Sbjct: 541 -------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

Query: 586 HVESLDLS 593
            V SL+++
Sbjct: 594 -VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (566), Expect = 1e-63
 Identities = 114/610 (18%), Positives = 211/610 (34%), Gaps = 73/610 (11%)

Query: 38  CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
           C+  + ++    +  N         P     S + L LS N  +   S    F++  L++
Sbjct: 3   CVEVVPNITYQCMELN-----FYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQV 56

Query: 98  FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 157
            +    EI+     +         L+TL L+ N                L+ +      +
Sbjct: 57  LDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNL 112

Query: 158 NGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 216
                   + +   L+ L +  N   +        +   L  LD+S+N I+      +  
Sbjct: 113 ASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 217 VLPSLYVFNN----SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 272
            L  + + N     S+N ++   P +F  ++ L  L L NN  +  + +    G   L+ 
Sbjct: 172 -LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 273 LALSNNNLQGH---LFSRNFNLTNLQWLQLEGNR------FVGEIPQSLSKCSSLEGLYL 323
             L     +            L  L  L +E  R      ++ +I    +  +++    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC 383
            + ++              Q++ + N            +L SL+ L  + N    +    
Sbjct: 290 VSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 384 FHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 442
             P S++ + LS+N L  +     + F  +SL  LDLS+N +     ++  GL QL HL 
Sbjct: 345 DLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLD 402

Query: 443 LGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSSPDE 497
             H+NL+          L  L  LD+S+ +        F+       L  + ++      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS------ 456

Query: 498 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 557
                        F E    +IF               L  L+ LDLS  +L    P   
Sbjct: 457 -------------FQENFLPDIF-------------TELRNLTFLDLSQCQLEQLSPTAF 490

Query: 558 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSV 616
            +L+ +Q LN+SHNN        +  L  ++ LD S N +      +L     +L   ++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 617 AYNNLSGEIP 626
             N+ +    
Sbjct: 551 TQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  200 bits (511), Expect = 6e-56
 Identities = 80/497 (16%), Positives = 150/497 (30%), Gaps = 37/497 (7%)

Query: 150 VDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH 209
                +    + P+ L  +    + L L  + L         S   L+ LD+S   I+  
Sbjct: 12  YQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 269
                   L  L     + N +      +F  +  LQ L     +L       +      
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 270 LQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLE----GLYLN 324
           L+ L +++N +Q       F NLTNL+ L L  N+        L     +      L L+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-LDSLQILDISDNNISG----- 378
            N +    P     + RL  + + NN     +     Q L  L++  +            
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 379 ----SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 434
               S       L+I++  L+    +       F   +++ +  L    +          
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 494
                HL L +       +++L  L +L        N             L  S +    
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNG--- 358

Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGHI 553
                 + F     Q      + +  + +   +  +      L  L  LD   + L    
Sbjct: 359 ------LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 554 PPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTL 611
              +  +L  +  L++SH +   +    F+ L  +E L ++ N            EL+ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 612 EVFSVAYNNLSGEIPEW 628
               ++   L    P  
Sbjct: 473 TFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (460), Expect = 6e-49
 Identities = 84/473 (17%), Positives = 172/473 (36%), Gaps = 41/473 (8%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI----LDVSSNQLT 56
           ++   +      +   +L +L+ L ++SN ++      +  +  + +    LD+S N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 57  GSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEITE 111
                +       + +L L NN+  + +    +   + L++      E +      +  +
Sbjct: 191 FIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 112 SHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTK 171
           S         +    L+                 ++    L  + +           N  
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFG 305

Query: 172 LETLFLVNDSLAGPFRLPIHSHKR-------------------LRQLDVSNNNI--RGHI 210
            + L LVN        L + S KR                   L  LD+S N +  +G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 211 PVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
                    SL   + S N +  ++ S+F  ++ L+ LD  +++L       + +   NL
Sbjct: 366 SQSDFG-TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 271 QFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLL 329
            +L +S+ + +         L++L+ L++ GN F     P   ++  +L  L L+   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 330 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-- 387
              P    +L+ LQ + M +N+        +  L+SLQ+LD S N+I  S          
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 388 SIKQVHLSKNMLHGQLKRGTFFN-CSSLVTLDLSYNRLNGSIPDWVDGLSQLS 439
           S+  ++L++N      +  +F         L +   R+  + P    G+  LS
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (410), Expect = 3e-42
 Identities = 72/393 (18%), Positives = 131/393 (33%), Gaps = 22/393 (5%)

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 306
                  +   +IP++L     + + L LS N L+       F+   LQ L L       
Sbjct: 11  TYQCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
               +    S L  L L  N +          L+ LQ ++    +L          L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 367 QILDISDNNI-SGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSL----VTLDLS 420
           + L+++ N I S  LP  F  L +++ + LS N +   +          +    ++LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS 185

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNL--HGPIP 477
            N +N   P     +  L  L L +N     V     + L  L++  L        G + 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
               +                +  ++  +    F    N   F   +  I  +       
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
               L+L   K       ++ +L R+   +    N       +  +L  +E LDLS N L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGL 359

Query: 598 N--GKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
           +  G          +L+   +++N +      +
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (399), Expect = 8e-41
 Identities = 72/439 (16%), Positives = 147/439 (33%), Gaps = 64/439 (14%)

Query: 13  QGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 71
           + L  + +    L ++ N +    P     +  L  L + +N  + ++  + +  L  +E
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 72  ELMLSNNYFQIPISLEP-----LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
              L    F+   +LE      L     L I       +   + +   L      +++ S
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 186
           L S   +      + +     ++++L + K    FP   L++  +L        +     
Sbjct: 289 LVSVTIERVKDFSYNF---GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 187 RLP---------------------IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
            LP                           L+ LD+S N +   +       L  L   +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG-LEQLEHLD 402

Query: 226 NSMNALDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284
              + L      S F +++ L  LD+S+ H           G  +L+ L ++ N+ Q + 
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF 461

Query: 285 FSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
               F  L NL +L L   +     P + +  SSL+ L +++N+           L  LQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 344 YIIMPNNHLEGPIPVEFCQL-DSLQILDISDNNIS------------------------- 377
            +    NH+      E      SL  L+++ N+ +                         
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 378 -GSLPSCFHPLSIKQVHLS 395
             + PS    + +  ++++
Sbjct: 582 ECATPSDKQGMPVLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  246 bits (630), Expect = 2e-72
 Identities = 96/639 (15%), Positives = 182/639 (28%), Gaps = 126/639 (19%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP---LVHLTSIEEL 73
           S   +  L +      G +P  +  +T L +L + S+    +        +    S E+ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 74  MLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 132
                ++Q   +  +P  ++S L      ++  +  I +S  +     +   +   SN  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT---LKDTQIGQLSNNI 195

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
                 K +     L    + +     E      EN                   L   +
Sbjct: 196 TFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDN 247

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL--------DGSIPSSFGNMKF 244
            K L  ++V N      +P  +   LP + + N + N          D    +     + 
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 245 LQILDLSNNHL-TGEIPEHLAVGCVNLQFLALSNNNLQGHL--FSRNFNLTNLQWLQLEG 301
           +QI+ +  N+L T  +   L      L  L    N L+G L  F    +   L  L L  
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFG---SEIKLASLNLAY 362

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL--GNLTRLQYIIMPNNHLEG----- 354
           N+              +E L   +N L   IP      +++ +  I    N +       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 355 --PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 412
             P+     +  ++  +++S+N IS      F                           S
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFS------------------------TGS 457

Query: 413 SLVTLDLSYNRLNG-------SIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQL 464
            L +++L  N L            +       L+ + L  N L       +   L  L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 465 LDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT 523
           +DLS N+     P    N +TL                                      
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTL-------------------------------------- 538

Query: 524 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 583
                     K   + +  D   N+ +   P  I     +  L +  N++         N
Sbjct: 539 ----------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN 588

Query: 584 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           +     LD+ +N         +       ++ + Y+   
Sbjct: 589 I---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  226 bits (578), Expect = 4e-65
 Identities = 72/543 (13%), Positives = 173/543 (31%), Gaps = 77/543 (14%)

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFL 177
           ++  LSL      G   P  +    +LE + L           +    +  N   E    
Sbjct: 82  RVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 178 VNDSLAGPF--RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
           +       F    P      L +  ++++  +  I      +           N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
             +   +  L+   + N+    E        C   +               +  NL +L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL--------GKIPRWLGNLTRLQYIIM 347
            +++     + ++P  L     ++ + +  N  +         +         ++Q I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 348 PNNHL-EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGHNNLEG-------EVSVQLC 457
                  +  L  ++N+L   IP+  D   +S +S +   +N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 458 ELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFL 512
           +   +  ++LSNN +       F      ++++   +  +  P    +       +    
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN---- 486

Query: 513 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSH 570
                                    LL+ +DL  NKL   +        L  +  ++LS+
Sbjct: 487 -----------------------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 571 NNLTGSIPSTFSNLKHVESLDLSN------NKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624
           N+ +   P+   N   ++   + N      N+   + P  +    +L    +  N++  +
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K 580

Query: 625 IPE 627
           + E
Sbjct: 581 VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (535), Expect = 5e-59
 Identities = 60/470 (12%), Positives = 142/470 (30%), Gaps = 72/470 (15%)

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFL 245
           ++S+ R+  L +      G +P  IG  L  L V     +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 246 QILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
           +       H      ++       +L    ++++  Q  +   +        +    N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
              + +++ + + L   Y+ N+  + +           +Y             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR-------GTFFNCSSLVT 416
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 417 LDLSYNRL-NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 475
           + + YN L    +   +  + +L  L   +N LEG++        +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 476 IPPCFDNTT----LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531
                  T     L  +++        F+                               
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKS---------------------------- 400

Query: 532 QGKVLSLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 584
               +S++S +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401 ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 585 KHVESLDLSNNKLNG-------KIPHQLVELKTLEVFSVAYNNLSGEIPE 627
             + S++L  N L                    L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (525), Expect = 1e-57
 Identities = 73/524 (13%), Positives = 169/524 (32%), Gaps = 67/524 (12%)

Query: 15  LCSLVHLQELYIASNDLRG----SLPWCMANMTSLRILDVSSNQLTGSI-SSSPLVHLTS 69
           +  L  L+ L + S+  +       P  ++   S             +     P    + 
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 70  IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN--EIKAEITESHSL------------ 115
           + +  ++++  Q  I           +I    NN   +   +     L            
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 116 --IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE 173
             I   ++      +  Y           +  DL  V++ +     + P +L +   +++
Sbjct: 221 ENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQ 276

Query: 174 TLFLVNDSLAGPFRLP--------IHSHKRLRQLDVSNNNIR-GHIPVKIGDVLPSLYVF 224
            + +  +      +L             ++++ + +  NN++   +   +   +  L + 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGML 335

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284
               N L+G +P+ FG+   L  L+L+ N +T  IP +       ++ L+ ++N L+   
Sbjct: 336 ECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 285 FSRNF-NLTNLQWLQLEGNRFVG-------EIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 336
              +  +++ +  +    N            +  +  K  ++  + L+NN +        
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 337 GNLTRLQYIIMPNNHLEG-------PIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-- 387
              + L  I +  N L              F     L  +D+  N ++  L   F     
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512

Query: 388 -SIKQVHLSKNMLHGQLKRGTFFNCSSLVTL------DLSYNRLNGSIPDWVDGLSQLSH 440
             +  + LS N            N S+L         D   NR     P+ +     L+ 
Sbjct: 513 PYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 441 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
           L +G N++   V+ ++     + +LD+ +N              
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  190 bits (484), Expect = 5e-52
 Identities = 53/430 (12%), Positives = 128/430 (29%), Gaps = 79/430 (18%)

Query: 215 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA 274
           G    + + FN  ++        S  +   +  L L     +G +P+ +      L+ LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 275 LSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNNNSL 328
           L ++  + +             + +  Q     +         +   S L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
              I +      +   I   +N++   +     +L  L+   + ++             +
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI----CEA 226

Query: 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
            +  +      +       + N   L  +++        +P ++  L ++  + +  N  
Sbjct: 227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 449 EGEVSV--------QLCELNQLQLLDLSNNNL-HGPIPPCFDNTTLHESYSNSSSPDEQF 499
                +              ++Q++ +  NNL   P+                       
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK----------------- 328

Query: 500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN 559
                                               +  L  L+   N+L G   P  G+
Sbjct: 329 ------------------------------------MKKLGMLECLYNQLEG-KLPAFGS 351

Query: 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP--HQLVELKTLEVFSVA 617
             ++ +LNL++N +T    +     + VE+L  ++NKL   IP       +  +     +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFS 410

Query: 618 YNNLSGEIPE 627
           YN +     +
Sbjct: 411 YNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (438), Expect = 8e-46
 Identities = 67/459 (14%), Positives = 136/459 (29%), Gaps = 103/459 (22%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-------SPLVHL 67
             +L  L ++ + +      LP  +  +  +++++V+ N+              +     
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 68  TSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
             I+ + +  N  +  P+    L    +L +     N+++ ++    S I    +L +L+
Sbjct: 305 EKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLN 359

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG-P 185
           L+ N                     ++ I      P        ++E L   ++ L   P
Sbjct: 360 LAYNQ--------------------ITEI------PANFCGFTEQVENLSFAHNKLKYIP 393

Query: 186 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 245
                 S   +  +D S N I                            +  +      +
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNF------------------DPLDPTPFKGINV 435

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNF-NLTNLQWLQ 298
             ++LSNN ++    E  +     L  + L  N L           + NF N   L  + 
Sbjct: 436 SSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 299 LEGNRFVGEIPQSL--SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN------N 350
           L  N+    +      +    L G+ L+ NS   K P    N + L+   + N      N
Sbjct: 495 LRFNKLTK-LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 351 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 410
                 P       SL  L I  N+I   +                              
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI-------------------------- 585

Query: 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
             ++  LD+  N        +V    +    +L ++  +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 13/227 (5%)

Query: 406 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 465
           G      +    +   +         ++   +++ L L      G V   + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 466 DLSNNNLHGP----IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 521
            L ++          P         E            + F   +  + F +     I  
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM--HYQKTFVDYDPREDFSDLIKDCINS 168

Query: 522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581
              +          L     +    N +   +   +  LT+++   + ++          
Sbjct: 169 DPQQKSIKKSSRITLKDTQ-IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
                    +    +       +   LK L    V       ++P +
Sbjct: 227 WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 32/331 (9%), Positives = 82/331 (24%), Gaps = 93/331 (28%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRG-------SLPWCMANMTSLRILDVSSN 53
            +  ++  +       S+  +  +  + N++          L        ++  +++S+N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 54  QLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESH 113
           Q++           + +  + L  N                 +I      +       ++
Sbjct: 444 QISKFPKEL-FSTGSPLSSINLMGNMLT--------------EIPKNSLKDENENFKNTY 488

Query: 114 SLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE 173
                   L ++ L  N                     L+ +       ++       L 
Sbjct: 489 L-------LTSIDLRFNK--------------------LTKL-----SDDFRATTLPYLV 516

Query: 174 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD-----VLPSLYVFNNSM 228
            + L                        S N+     P +  +             +   
Sbjct: 517 GIDL------------------------SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 229 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN 288
           N      P        L  L + +N +  ++ E +     N+  L + +N       S  
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDIKDNPNISIDLSYV 607

Query: 289 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319
                     L  ++      Q +  C +L+
Sbjct: 608 CPYIEAGMYMLFYDK-----TQDIRGCDALD 633

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  215 bits (550), Expect = 2e-64
 Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 227 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPEHLAVGCVNLQFLALSN-NNLQGH 283
                 G +  +      +  LDLS  +L     IP  LA     L FL +   NNL G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP 92

Query: 284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
           +      LT L +L +      G IP  LS+  +L  L  + N+L G +P  + +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 344 YIIMPNNHLEGPIPVEFCQLDSL-QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 402
            I    N + G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 403 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 462
                F +  +   + L+ N L   +   V     L+ L L +N + G +   L +L  L
Sbjct: 213 ASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 463 QLLDLSNNNLHGPIPP 478
             L++S NNL G IP 
Sbjct: 271 HSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (541), Expect = 4e-63
 Identities = 81/297 (27%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 189 PIHSHKRLRQLDVSNNNIRG--HIPVKIGDVLPSLYVFN-NSMNALDGSIPSSFGNMKFL 245
                 R+  LD+S  N+     IP  + + LP L       +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305
             L +++ +++G IP+ L+     L  L  S N L G L     +L NL  +  +GNR  
Sbjct: 104 HYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 306 GEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
           G IP S    S L   + ++ N L GKIP    NL  L ++ +  N LEG   V F    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
           + Q + ++ N+++  L                                +L  LDL  NR+
Sbjct: 222 NTQKIHLAKNSLAFDLGK-------------------------VGLSKNLNGLDLRNNRI 256

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH--GPIPPC 479
            G++P  +  L  L  L +  NNL GE+  Q   L +  +   +NN      P+P C
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  208 bits (531), Expect = 1e-61
 Identities = 73/378 (19%), Positives = 122/378 (32%), Gaps = 108/378 (28%)

Query: 307 EIPQSLSKCSSL----EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEF 360
           +I + L   ++L          N + LG +        R+  + +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 361 CQLDSLQILDISD-NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
           ++  ++G+IPD++  +  L  L   +N L G +   +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 539
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
           + + +S N+L G IPP   NL  +  ++LS N L G     F + K+ + + L+ N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 600 KIPHQLVELKTLEVFSVAYNNLSGEIPEW-----------------------KAQFATFN 636
            +  ++   K L    +  N + G +P+                              F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 637 ESSYEGNTFLCGLPLPIC 654
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (509), Expect = 2e-58
 Identities = 85/354 (24%), Positives = 128/354 (36%), Gaps = 67/354 (18%)

Query: 234 SIPSSFGNMKFLQ----ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG--HLFSR 287
            I    GN   L       D  N    G + +        +  L LS  NL     + S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 288 NFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346
             NL  L +L + G N  VG IP +++K + L  LY+ + ++ G IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS--IKQVHLSKNMLHGQLK 404
              N L G +P     L +L  +    N ISG++P  +   S     + +S+N L G++ 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 464
             TF N  +L  +DLS N L G              + L  N+L  ++  ++     L  
Sbjct: 192 P-TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 465 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524
           LDL NN ++G +P                                               
Sbjct: 249 LDLRNNRIYGTLPQGLTQ------------------------------------------ 266

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 578
                      L  L  L++S N L G I PQ GNL R      ++N      P
Sbjct: 267 -----------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (402), Expect = 1e-43
 Identities = 76/362 (20%), Positives = 122/362 (33%), Gaps = 92/362 (25%)

Query: 29  NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELMLSN-NYF--QIPI 84
               G L         +  LD+S   L         + +L  +  L +   N     IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 85  SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQ 144
           ++      ++L                         QL+ L ++                
Sbjct: 96  AI------AKLT------------------------QLHYLYITHT-------------- 111

Query: 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 204
                       ++G  P++ L     L TL                          S N
Sbjct: 112 -----------NVSGAIPDF-LSQIKTLVTLDF------------------------SYN 135

Query: 205 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL-QILDLSNNHLTGEIPEHL 263
            + G +P  I   LP+L       N + G+IP S+G+   L   + +S N LTG+IP   
Sbjct: 136 ALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-- 192

Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 323
               +NL F+ LS N L+G       +  N Q + L  N    ++   +    +L GL L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

Query: 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI--SGSLP 381
            NN + G +P+ L  L  L  + +  N+L G IP     L    +   ++N       LP
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

Query: 382 SC 383
           +C
Sbjct: 311 AC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (320), Expect = 2e-32
 Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 40/268 (14%)

Query: 15  LCSLVHLQELYIAS-NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
           L +L +L  LYI   N+L G +P  +A +T L  L ++   ++G+I    L  + ++  L
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130

Query: 74  MLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
             S N     +P S+  L N                              L  ++   N 
Sbjct: 131 DFSYNALSGTLPPSISSLPN------------------------------LVGITFDGNR 160

Query: 132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH 191
             G I   +         + +S  ++ G+ P      N  L  + L  + L G   +   
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFG 218

Query: 192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 251
           S K  +++ ++ N++   +  K+G    +L   +   N + G++P     +KFL  L++S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 252 NNHLTGEIPEHLAVGCVNLQFLALSNNN 279
            N+L GEIP+            A +NN 
Sbjct: 277 FNNLCGEIPQGGN--LQRFDVSAYANNK 302

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (581), Expect = 6e-64
 Identities = 78/541 (14%), Positives = 178/541 (32%), Gaps = 73/541 (13%)

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 180
           ++  LSL+     G + P  +    +L+ +             +  E  T   +    + 
Sbjct: 324 RVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 181 SLAGPFRLPIHSHKRLRQLDVSNNNIRGH---IPVKIGDVLPSLYVFNNSMNALDGSIPS 237
                 ++ +   +RL   D+  + I  +    P+K    +        ++      I  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
           +   +  LQI+  +N+  T +         V+ +           +      NL +L  +
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL---------LGKIPRWLGNLTRLQYIIMP 348
           +L     + ++P  L     L+ L +  N             ++        ++Q   M 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 349 NNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 407
            N+LE  P      ++  L +LD   N +   L +    + +  + L  N +  ++    
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGHNNLEGEVSVQLCELNQLQL- 464
                 +  L  S+N+L   IP+  +   +  +  +   +N +  E     C ++  +  
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 465 ----LDLSNNNLHGPIPPCFDN-TTLHE-SYSN---SSSPDEQFEIFFSIEGHQGFLEKQ 515
               + LS N +       F   + +     SN   +S P+   +       +       
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN------- 726

Query: 516 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNL 573
                                 LL+ +DL  NKL   +        L  +  +++S+N  
Sbjct: 727 --------------------TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF 765

Query: 574 TGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           + S P+   N   +++  +        N++  + P  +    +L    +  N++  ++ E
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 628 W 628
            
Sbjct: 824 K 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (580), Expect = 8e-64
 Identities = 93/678 (13%), Positives = 187/678 (27%), Gaps = 140/678 (20%)

Query: 2   SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS 61
              ++ G      L +   +  L +A    +G +P  +  +T L++L   ++  T S   
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 62  SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA--EITESHSLIAPK 119
                L + +      +  ++      L    RL + +   + I    E+          
Sbjct: 366 FGDEEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 120 FQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
            +   +   +N        K +     L+ +  ++                  E      
Sbjct: 425 LKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDY 476

Query: 180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
                   L   + K L  +++ N                               +P   
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCP-------------------------NMTQLPDFL 511

Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAV--------GCVNLQFLALSNNNLQGHLFSRNF-N 290
            ++  LQ L+++ N                        +Q   +  NNL+    S +   
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPN 349
           +  L  L    N+      ++      L  L L+ N  + +IP      T  ++ +   +
Sbjct: 572 MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSH 628

Query: 350 NHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
           N L+  P       +  +  +D S N I     +    +                     
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD------------------- 669

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE-------GEVSVQLCELNQ 461
           +   +  T+ LSYN +     +     S +S +IL +N +                    
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 521
           L  +DL  N L   +   F  TTL                                    
Sbjct: 730 LTTIDLRFNKLTS-LSDDFRATTLPY---------------------------------- 754

Query: 522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTG 575
                            LS +D+S N      P Q  N ++++   + H      N +  
Sbjct: 755 -----------------LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 576 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL-SGEIPE-WKAQFA 633
             P+  +    +  L + +N +  K+  +L     L +  +A N   S ++        A
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA 853

Query: 634 TFNESSYEGNTFLCGLPL 651
                 Y+    + G   
Sbjct: 854 GMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (488), Expect = 1e-51
 Identities = 87/534 (16%), Positives = 169/534 (31%), Gaps = 87/534 (16%)

Query: 148 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVN-------DSLAGPFRLPIHSHKRLRQLD 200
           +Y  L  I    +  NW   + T   T+  +N       D       + + ++ R+  L 
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329

Query: 201 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 260
           ++    +G +P  IG  L  L V +   ++   S            + +   + +     
Sbjct: 330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 261 EHLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCS 316
           +        L    L  + +  +      +  +  +L+  Q+      +  I +++ + +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 317 SLEGLYLNNNSL-------------------LGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
            L+ +Y  N+                              NL  L  + + N      +P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 358 VEFCQLDSLQILDISDNNISG---------SLPSCFHPL-SIKQVHLSKNMLHGQLKRGT 407
                L  LQ L+I+ N              L         I+  ++  N L       +
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLD 466
                 L  LD  +N++   +  +     +L+ L L +N +E E+    C   +Q++ L 
Sbjct: 569 LQKMVKLGLLDCVHNKVR-HLEAFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625

Query: 467 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK----QNHEIFEF 522
            S+N L   IP  F+  +++                         +       N      
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYV------------------------MGSVDFSYNK--IGS 658

Query: 523 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT-------G 575
             +NI+           S + LS N++           + I T+ LS+N +T        
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 576 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV--ELKTLEVFSVAYNNLSGEIPE 627
                + N   + ++DL  NKL   +        L  L    V+YN  S   P 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (432), Expect = 2e-44
 Identities = 58/435 (13%), Positives = 122/435 (28%), Gaps = 83/435 (19%)

Query: 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG- 282
           FN  ++           N   +  L L+     G +P+ +      L+ L+   ++    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVS 362

Query: 283 ------HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 336
                    + + +      +++   +   +  Q L+  S L    +N N  +  I +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN-LSDLLQDAINRNPEMKPIKKDS 421

Query: 337 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396
               +   I    N +   I     +L  LQI+  +++  +         +  +  +   
Sbjct: 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI----AVDWEDANSDY 476

Query: 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV-- 454
              +      ++ N   L  ++L        +PD++  L +L  L +  N       +  
Sbjct: 477 AKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 455 -------QLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE 506
                        ++Q+  +  NNL   P                               
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK------------------------ 571

Query: 507 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 566
                                        +  L  LD   NK+        G   ++  L
Sbjct: 572 -----------------------------MVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 567 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLEVFSVAYNNLSGE 624
            L +N +        +    VE L  S+NKL   IP+      +  +     +YN +  E
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 625 IPEWKAQFATFNESS 639
                     +   +
Sbjct: 660 GRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (341), Expect = 5e-33
 Identities = 62/517 (11%), Positives = 131/517 (25%), Gaps = 97/517 (18%)

Query: 139 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 198
            F     +L+ + +++ + + E  N    N+  ++      DS      LP  +++ +  
Sbjct: 165 SFNRVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSA---VWLPAGTYQ-VVA 220

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNN-----------SMNALDGSIPSSFGNMKFLQI 247
               + +      ++   V    +   +            +      I          + 
Sbjct: 221 YTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEA 280

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 307
           LD  N         +      N  F     +           N   +  L L G    G 
Sbjct: 281 LDGKNWRYYSGTINNTIHSL-NWNFNK-ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLDSL 366
           +P ++ + + L+ L    +S       +              + +       F      L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 367 QILDISDNNISGSL------PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
            + D+  + I+ +             L   Q+    N +    K       + L  +  +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--AIQRLTKLQIIYFA 456

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 480
            +                      +        +    L  L  ++L N      +P   
Sbjct: 457 NSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 540
            +                                                     L  L 
Sbjct: 512 YD-----------------------------------------------------LPELQ 518

Query: 541 GLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESL 590
            L+++CN+ I           +        +IQ   + +NNL     S +   +  +  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 591 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           D  +NK+  +          L    + YN +  EIPE
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 2e-29
 Identities = 62/401 (15%), Positives = 110/401 (27%), Gaps = 92/401 (22%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           M    +     S  L  +V L  L    N +R  L         L  L +  NQ+   I 
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP 611

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
                    +E L  S+N  +   ++    +   +   +   N+I               
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI--------------- 656

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 180
                   S   +           +    V LS+ ++   FP  L    + + T      
Sbjct: 657 -------GSEGRNISCSMDDYKGIN-ASTVTLSYNEIQK-FPTELFATGSPIST------ 701

Query: 181 SLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 240
                             + +SNN +   IP                          ++ 
Sbjct: 702 ------------------IILSNNLM-TSIP-----------------ENSLKPKDGNYK 725

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 300
           N   L  +DL  N LT    +  A     L  + +S N       ++  N + L+   + 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784

Query: 301 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 360
             R                      N +L + P  +     L  + + +N +   +  + 
Sbjct: 785 HQRD------------------AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

Query: 361 CQLDSLQILDISDNNI-SGSLPSCFHPLSIKQVHLSKNMLH 400
                L ILDI+DN   S  + S    +      L  +   
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 13/86 (15%), Positives = 27/86 (31%)

Query: 565 TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624
             N   +           N   V  L L+     G++P  + +L  L+V S   ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 625 IPEWKAQFATFNESSYEGNTFLCGLP 650
              +  +  T + S    +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (564), Expect = 3e-63
 Identities = 108/596 (18%), Positives = 199/596 (33%), Gaps = 82/596 (13%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNA 100
            S   L+ S N L  +I ++    L ++  L L+          + +             
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR--------- 82

Query: 101 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 160
                                L+TL L++N          L     L+++      ++  
Sbjct: 83  ---------------------LDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSI 120

Query: 161 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 220
                L N   LE+L+L ++ ++          ++L+ LD  NN I  ++  +    L  
Sbjct: 121 DFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQ 178

Query: 221 L--YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLQFLALSN 277
                 N + N +   I     +    Q L+         I + L      +L      +
Sbjct: 179 ATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 278 NNLQG--HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
            + +             +++ + L+ + F      +    S L+ L L     L ++P  
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSG 296

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQVH 393
           L  L+ L+ +++  N  E    +      SL  L I  N     L + C   L +++++ 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 394 LSKNMLHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-E 451
           LS + +           N S L +L+LSYN       +      QL  L L    L+  +
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEG 507
                  L+ L++L+LS++ L       FD       L+   ++    + Q         
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-- 474

Query: 508 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 567
                                       L  L  L LS   L         +L  +  ++
Sbjct: 475 ----------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623
           LSHN LT S     S+LK +  L+L++N ++  +P  L  L      ++  N L  
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  217 bits (556), Expect = 4e-62
 Identities = 90/480 (18%), Positives = 168/480 (35%), Gaps = 19/480 (3%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
             S   L  L + +N L       ++   +L+ L      ++ SI   PL +  ++E L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLY 135

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           L +N+    I L   F   +LK+ + +NN I      S   ++   Q   LSL+ N  D 
Sbjct: 136 LGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH---YLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN-TKLETLFLVNDSLAGPFRLPIHSH 193
                  +     + ++    +        L  +    L      +              
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 194 KR--LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 251
               +  +++  +     I          L   + +   L   +PS    +  L+ L LS
Sbjct: 252 CEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLS 309

Query: 252 NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR--FVGEI 308
            N     + +  A    +L  L++  N  +  L +    NL NL+ L L  +        
Sbjct: 310 ANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQ 367
              L   S L+ L L+ N  L           +L+ + +    L+       F  L  L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 368 ILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHG--QLKRGTFFNCSSLVTLDLSYNRL 424
           +L++S + +  S    F  L +++ ++L  N        K  +      L  L LS+  L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
           +         L  ++H+ L HN L       L  L  +  L+L++N++   +P      +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (553), Expect = 9e-62
 Identities = 108/594 (18%), Positives = 199/594 (33%), Gaps = 79/594 (13%)

Query: 46  RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 105
           +  +  +  L       P     S E L  S N     I          L   +    +I
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 106 KAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL 165
                ++      + +L+TL L++N          L     L+++      ++       
Sbjct: 70  YWIHEDT---FQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFI-P 124

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL--YV 223
           L N   LE+L+L ++ ++          ++L+ LD  NN I  ++  +    L       
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLS 183

Query: 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQG 282
            N + N +   I     +    Q L+         I + L      +L      + + + 
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 283 --HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
                       +++ + L+ + F      +    S L+ L L    L  ++P  L  L+
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS 301

Query: 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNM 398
            L+ +++  N  E    +      SL  L I  N     L + C   L +++++ LS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 399 LHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQL 456
           +           N S L +L+LSYN       +      QL  L L    L+  +     
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 457 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 516
             L+ L++L+LS++ L       FD                                   
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------- 447

Query: 517 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL---IGHIPPQIGNLTRIQTLNLSHNNL 573
                              L  L  L+L  N            +  L R++ L LS  +L
Sbjct: 448 -------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           +      F++LK +  +DLS+N+L       L  LK +   ++A N++S  +P 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (538), Expect = 1e-59
 Identities = 105/594 (17%), Positives = 193/594 (32%), Gaps = 80/594 (13%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
             + L  + N L        + + +L  LD++  Q+   I          ++ L+L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 139
               ++   L     LK        I +        +  +  L +L L SN+      PK
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSNHISSIKLPK 148

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPIHSHKRLRQ 198
               +  L+ +D  +  ++       + +  +   L L +N +               + 
Sbjct: 149 GFPTEK-LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 199 LDVSNNNIRGHIPVKI-GDVLPSLYVFNNSMNALDGSIPSSFGNMKF--LQILDLSNNHL 255
           L+         I   +    + SL++        +   P+ F  +    ++ ++L  ++ 
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
                         LQ L L+  +L   L S    L+ L+ L L  N+F      S S  
Sbjct: 267 FNISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 316 SSLEGLYLNNNSLLGKI-PRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLDSLQILDIS 372
            SL  L +  N+   ++    L NL  L+ + + ++ +E      ++   L  LQ L++S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
            N                            LK   F  C  L  LDL++ RL        
Sbjct: 385 YNEPLS------------------------LKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 433 -DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES--- 488
              L  L  L L H+ L+         L  LQ L+L  N+         ++         
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 489 ---YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
                                     L   +   F                  ++ +DLS
Sbjct: 481 LVLSFCD-------------------LSSIDQHAFTSLKM-------------MNHVDLS 508

Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
            N+L       + +L  I  LNL+ N+++  +PS    L    +++L  N L+ 
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (532), Expect = 7e-59
 Identities = 89/504 (17%), Positives = 163/504 (32%), Gaps = 51/504 (10%)

Query: 142 YHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV 201
             +   +  +  ++ +N E P  L  +    E L    + L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 202 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 261
           +   I   I          L     + N L     ++    K L+ L      ++     
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 262 HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 321
            L      L+ L L +N++      + F    L+ L  + N       + +S       L
Sbjct: 124 PLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 322 YLN-NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP--VEFCQLDSLQILDISDNNISG 378
            LN N + +  I     +    Q +          I   ++   + SL +    D +   
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 379 SLPSCFHP---LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 435
             P+ F     +S++ ++L K+     +   TF   S L  LDL+   L+  +P  + GL
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 436 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYS 490
           S L  L+L  N  E    +       L  L +  N     +   C +N      L  S+ 
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 550
           +  + D       +                               LS L  L+LS N+ +
Sbjct: 361 DIETSDCCNLQLRN-------------------------------LSHLQSLNLSYNEPL 389

Query: 551 GHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELK 609
                      +++ L+L+   L      S F NL  ++ L+LS++ L+         L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 610 TLEVFSVAYNNLSGEIPEWKAQFA 633
            L+  ++  N+      +      
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (520), Expect = 4e-57
 Identities = 94/486 (19%), Positives = 165/486 (33%), Gaps = 28/486 (5%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L++L  L +    +         +   L  L +++N L   ++ + L    +++ L 
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLF 111

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ----LNTLSLSSN 130
                    I   PL N   L+     +N I        S+  PK      L  L   +N
Sbjct: 112 FIQTGISS-IDFIPLHNQKTLESLYLGSNHI-------SSIKLPKGFPTEKLKVLDFQNN 163

Query: 131 YGDGFIFPKFLY-HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
                         Q     ++L+   + G  P        +        + L     L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKI-GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
             + + L      + +     P    G    S+   N   +       ++F     LQ L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGE 307
           DL+  HL+ E+P  L  G   L+ L LS N  +  L   +  N  +L  L ++GN    E
Sbjct: 284 DLTATHLS-ELPSGLV-GLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLE 340

Query: 308 I-PQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
           +    L    +L  L L+++ +         L NL+ LQ + +  N         F +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 365 SLQILDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
            L++LD++   +      S F  L  +K ++LS ++L        F    +L  L+L  N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGN 459

Query: 423 RLNGSIPDWVD---GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
                     +    L +L  L+L   +L          L  +  +DLS+N L       
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 480 FDNTTL 485
             +   
Sbjct: 520 LSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (490), Expect = 5e-53
 Identities = 90/474 (18%), Positives = 166/474 (35%), Gaps = 41/474 (8%)

Query: 10  VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 69
           +    L +   L+ LY+ SN +             L++LD  +N +   +S   +  L  
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQ 178

Query: 70  IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
              L L+ N                       N+     I              +L+   
Sbjct: 179 ATNLSLNLNG----------------------ND-----IAGIEPGAFDSAVFQSLNFGG 211

Query: 130 NYGDGFIFPKFLYHQ-HDLEYVDLSHIKMNGEFPNWLLEN-NTKLETLFLVNDSLAGPFR 187
                 IF          L       +      P          +E++ L          
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 188 LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 247
              H    L++LD++  ++   +P  +   L +L     S N  +     S  N   L  
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNF-NLTNLQWLQLEGNRFV 305
           L +  N    E+         NL+ L LS+++++     +    NL++LQ L L  N  +
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
               ++  +C  LE L L    L  K  +    NL  L+ + + ++ L+      F  L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 365 SLQILDISDNNISGSLPSCFHPL----SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           +LQ L++  N+         + L     ++ + LS   L   + +  F +   +  +DLS
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLS 508

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 474
           +NRL  S  + +  L  + +L L  N++   +   L  L+Q + ++L  N L  
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  156 bits (397), Expect = 1e-40
 Identities = 80/465 (17%), Positives = 146/465 (31%), Gaps = 41/465 (8%)

Query: 15  LCSLVHLQELYIASNDLR-GSLPWCMANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEE 72
           + SL     L +  N      +     +    + L+    Q             + S+  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 73  LMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
               +     I  ++        ++  N + +      + +    +    L  L L++ +
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS---GLQELDLTATH 289

Query: 132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV-NDSLAGPFRLPI 190
                 P  L     L+ + LS  K           N   L  L +  N          +
Sbjct: 290 LSEL--PSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 191 HSHKRLRQLDVSNNNIRG-HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
            + + LR+LD+S+++I            L  L   N S N        +F     L++LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEI 308
           L+   L  +  +        L+ L LS++ L      + F  L  LQ L L+GN F    
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368
            Q                         L  L RL+ +++    L       F  L  +  
Sbjct: 466 IQK---------------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
           +D+S N ++ S       L    ++L+ N +   +        S   T++L  N L+ + 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTC 563

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNL 472
                           +     +    LCE    L+ + LS+  L
Sbjct: 564 -----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 4e-18
 Identities = 52/330 (15%), Positives = 113/330 (34%), Gaps = 60/330 (18%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGS--LPWCMANMTSLRILDVSSNQLTGS 58
           +        + +  L +L +L+EL ++ +D+  S      + N++ L+ L++S N+   S
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-S 390

Query: 59  ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
           + +        +E L L+    ++  +  P  N   LK+ N  ++ +             
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD------------ 438

Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
                               +       L++++L          N   + N +       
Sbjct: 439 ----------------ISSEQLFDGLPALQHLNLQG--------NHFPKGNIQKTNSL-- 472

Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS 238
                        +  RL  L +S  ++   I       L  +   + S N L  S   +
Sbjct: 473 ------------QTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 239 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
             ++K +  L+L++NH++  +P  L       + + L  N L     +  F    L+W +
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLP-ILSQQRTINLRQNPLDCTCSNIYF----LEWYK 573

Query: 299 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
               +              L G+ L++ +L
Sbjct: 574 ENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (539), Expect = 9e-60
 Identities = 102/598 (17%), Positives = 191/598 (31%), Gaps = 91/598 (15%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
             + + ++ N L+    +  +N + L+ LD+S  ++      +    L  +  L+L+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP 91

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 139
            Q   S       + L+   A   ++ +  +     I     L  L+++ N+      P 
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPA 147

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPN---WLLENNTKLETLFLVNDSL----AGPFRLPIHS 192
           +  +  +L +VDLS+  +     N   +L EN     +L +  + +       F+     
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--- 204

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQ 246
             +L +L +  N    +I       L  L+V    +             PS    +  + 
Sbjct: 205 --KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 247 I--LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
           I    L+  +   +          N+  ++L+  +++             Q L +   + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFH-CLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQ 362
                  L     L+ L L  N     I      L  L Y+ +  N L   G        
Sbjct: 320 KQFPTLDL---PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 363 LDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
            +SL+ LD+S N     + + F  L  ++ +    + L    +   F +   L+ LD+SY
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCF 480
                       GL+ L+ L +  N+ +             L  LDLS   L       F
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 540
           D                                                      L  L 
Sbjct: 494 DT-----------------------------------------------------LHRLQ 500

Query: 541 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
            L++S N L+         L  + TL+ S N +  S        K +   +L+NN + 
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (425), Expect = 3e-44
 Identities = 82/461 (17%), Positives = 149/461 (32%), Gaps = 53/461 (11%)

Query: 2   SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI----LDVSSNQLTG 57
           +   ++         +L +L  + ++ N ++      +  +         LD+S N +  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID- 194

Query: 58  SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEITES 112
            I       +  + EL L  N+    I    L N + L +      E K          S
Sbjct: 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 113 HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKL 172
                    ++   L+    D        +   ++  + L+ + +        +  + K 
Sbjct: 254 IMEGLCDVTIDEFRLTYTN-DFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKW 309

Query: 173 ETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD 232
           ++L ++   L      P      L+ L ++ N                            
Sbjct: 310 QSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG-------------------------- 340

Query: 233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQGHLFSRNF-N 290
            SI      +  L  LDLS N L+       + +G  +L+ L LS N     + S NF  
Sbjct: 341 -SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMG 397

Query: 291 LTNLQWLQLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           L  LQ L  + +        S       L  L ++  +           LT L  + M  
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 350 NHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGT 407
           N  +       F    +L  LD+S   +       F  L  ++ +++S N L   L    
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSH 516

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
           +    SL TLD S+NR+  S          L+   L +N++
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (397), Expect = 1e-40
 Identities = 79/406 (19%), Positives = 138/406 (33%), Gaps = 34/406 (8%)

Query: 233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NL 291
           GS+      +  +      +  L+ ++P+ +     + + + LS N L+  L S +F N 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLK-ILKSYSFSNF 55

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
           + LQWL L          ++      L  L L  N +    P     LT L+ ++     
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFF 409
           L         QL +L+ L+++ N I    LP+ F  L ++  V LS N +   +      
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174

Query: 410 N----CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQL 464
                    ++LD+S N ++  I D      +L  L L  N     +    L  L  L +
Sbjct: 175 FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 465 LDLS------NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 518
             L         NL    P   +            +    F            +   +  
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS-- 291

Query: 519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 578
                  +I Y+           L +   + +   P    +L  +++L L+ N    SI 
Sbjct: 292 ---LAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTLTMNKG--SIS 343

Query: 579 STFSNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLS 622
                L  +  LDLS N L+        +L T  L    +++N   
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
            S L  LDLS  ++          L  +  L L+ N +    P +FS L  +E+L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSG 623
           KL       + +L TL+  +VA+N +  
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 20/86 (23%), Positives = 32/86 (37%)

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
           +DLS N L         N + +Q L+LS   +       +  L H+ +L L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 602 PHQLVELKTLEVFSVAYNNLSGEIPE 627
           P     L +LE        L+     
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 10/180 (5%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
                +  V       SL  L  L I+  + +         +TSL  L ++ N    +  
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
           S+   + T++  L LS    +  IS        RL++ N  +N +        S     +
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLL---FLDSSHYNQLY 521

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSH-----IKMNGEFPNWLLENNTKLETL 175
            L+TL  S N  +        +    L + +L++     I  + +F  W+ E    L  +
Sbjct: 522 SLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNV 580

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (473), Expect = 1e-49
 Identities = 132/715 (18%), Positives = 231/715 (32%), Gaps = 109/715 (15%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           L   + L ++ N +R         +  L++L++ S     +I      +L ++  L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 78  NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
           +     +  +       L         +   + +       K  L  L LS N       
Sbjct: 83  SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYL 140

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN--NTKLETLFL------VNDSLAGPFRLP 189
                  + L+ +D S  ++        LE      L    L         S+     + 
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
              +  L  LDVS N     I               N  NA+  S   S      +    
Sbjct: 200 PFRNMVLEILDVSGNGWTVDIT-------------GNFSNAISKSQAFSLILAHHIMGAG 246

Query: 250 LSNNHLTGEIPEHLAVG--CVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRF 304
              +++  +  ++   G    +++ L LS+  +      +F     L +L+ L L  N+ 
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKDLKVLNLAYNKI 302

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
                ++     +L+ L L+ N L          L ++ YI +  NH+       F  L+
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
            LQ LD+ DN ++    +     SI  + LS N L   L +       +   + LS NRL
Sbjct: 363 KLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHLSENRL 413

Query: 425 NG-SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN 482
               I  ++  +  L  LIL  N        Q       L+ L L  N L          
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
                                                                LS L  L
Sbjct: 474 DVFEG------------------------------------------------LSHLQVL 485

Query: 543 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
            L+ N  +  +PP +  +LT ++ L+L+ N LT    +      ++E LD+S N+L    
Sbjct: 486 YLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPN 542

Query: 602 PHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATM 660
           P   V L  L+   + +N    E      + +TF       N  + G P  I C  P + 
Sbjct: 543 PDVFVSLSVLD---ITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYCVYPDSF 594

Query: 661 PEASIGN----EQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYF 711
              S+ +      D+  +     F  F    V +   ++ +L V  +    +  +
Sbjct: 595 SGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (457), Expect = 1e-47
 Identities = 105/524 (20%), Positives = 191/524 (36%), Gaps = 52/524 (9%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-GSI 59
           + S      +  +   +L +L+ L + S+ +    P     +  L  L +    L+   +
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 60  SSSPLVHLTSIEELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAP 118
                 +L ++  L LS N  +  + L P F   + LK  +  +N+I   + E       
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQ 172

Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
              L+  SL++N     +   +    +    + L  +         +  N   ++     
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNF 224

Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKI--GDVLPSLYVFNNSMNALDGSIP 236
           +++++      +     +       +NI+         G    S+   + S   +     
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQ 295
             F  +K L++L+L+ N +  +I +    G  NLQ L LS N L   L+S NF  L  + 
Sbjct: 284 RVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVA 341

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG- 354
           ++ L+ N       Q+      L+ L L +N+L       +  +  +  I +  N L   
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL 396

Query: 355 --------------------PIPVEFCQLDSLQILDISDNNISGSLPSCF--HPLSIKQV 392
                                I     ++  LQIL ++ N  S            S++Q+
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 393 HLSKNMLHG----QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
            L +NML      +L    F   S L  L L++N LN   P     L+ L  L L  N L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 449 EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 492
                  L     L++LD+S N L  P P  F + ++ +   N 
Sbjct: 517 TVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 4e-35
 Identities = 72/360 (20%), Positives = 123/360 (34%), Gaps = 31/360 (8%)

Query: 275 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI-P 333
               NL   +      L   + L L  N        S      L+ L L +      I  
Sbjct: 11  YRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSCFHPL-SIK 390
               NL  L+ + + ++ +    P  F  L  L  L +    +S ++     F  L ++ 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ--LSHLILGHNNL 448
           ++ LSKN +       +F   +SL ++D S N++       ++ L    LS   L  N+L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 449 EGEVSVQLCELNQ------LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 502
              VSV   +         L++LD+S N     I   F N        +           
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 503 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 562
           F             H I +         + G   S +  LDLS   +          L  
Sbjct: 247 FG-----------FHNIKDPD----QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           ++ LNL++N +       F  L +++ L+LS N L          L  +    +  N+++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (431), Expect = 2e-45
 Identities = 98/468 (20%), Positives = 178/468 (38%), Gaps = 21/468 (4%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           SL HL  L +  N ++       + ++SL+ L      L  S+ + P+ HL +++EL ++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITES-HSLIAPKFQLNTLSLSSNYGDGF 135
           +N  Q     E   N + L+  +  +N+I++        L        +L LS N  +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF- 191

Query: 136 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL---PIHS 192
                 + +  L  + L +   +       ++    LE   LV         L      +
Sbjct: 192 -IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 193 HKRLRQLDVSNNNIRG--HIPVKIGDVLPSLY-VFNNSMNALDGSIPSSFGNMKFLQILD 249
            + L  L +    +    +    I D+   L  V + S+ ++       F      Q L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR--FVGE 307
           L N          L     +L+ L  ++N           +L +L++L L  N   F G 
Sbjct: 311 LVNCKFGQFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDSL 366
             QS    +SL+ L L+ N ++  +      L +L+++   +++L+       F  L +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
             LDIS  +   +    F+ L S++ + ++ N          F    +L  LDLS  +L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
              P   + LS L  L +  N L+         L  LQ + L  N   
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (429), Expect = 5e-45
 Identities = 88/447 (19%), Positives = 160/447 (35%), Gaps = 25/447 (5%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L  LQ+L     +L     + + ++ +L+ L+V+ N +          +LT++E L 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           LS+N  Q  I    L    ++ + N   +     +         + +L+ L+L +N+   
Sbjct: 156 LSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNG-----EFPNWLLENNTKLETLFL---VNDSLAGPF 186
            +    +     LE   L   +        +F    LE    L          D      
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
               +    +    + +  I              L + N                +K L+
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLK 328

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLTNLQWLQLEGNRF 304
            L  ++N       E   V   +L+FL LS N L   G     +F  T+L++L L  N  
Sbjct: 329 RLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQL 363
           +  +  +      LE L   +++L          +L  L Y+ + + H        F  L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 364 DSLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
            SL++L ++ N+   +     F  L ++  + LS+  L  QL    F + SSL  L+++ 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMAS 503

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNL 448
           N+L        D L+ L  + L  N  
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (411), Expect = 1e-42
 Identities = 97/482 (20%), Positives = 184/482 (38%), Gaps = 33/482 (6%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
             + L ++ N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 139
            Q  ++L      S L+   A    +    +  +  I     L  L+++ N    F  P+
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH----SHKR 195
           +  +  +LE++DLS  K+        L    ++  L L  D L+      I        R
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIR 201

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQILD 249
           L +L + NN    ++       L  L V    +              S+   +  L I +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 250 LSNNHLTGEIPEHLAV--GCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVG 306
               +L   + + + +     N+   +L +  ++    FS NF   +L+ +  +  +F  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-- 319

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 364
                  K  SL+ L   +N           +L  L+++ +  N L   G          
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN 482
              +     +GLS L  L +  N+ +         EL  L  LDLS   L    P  F++
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 483 TT 484
            +
Sbjct: 493 LS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 4e-41
 Identities = 81/441 (18%), Positives = 151/441 (34%), Gaps = 37/441 (8%)

Query: 200 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 259
                N    IP  +     +L +   S N L      SF +   LQ+LDLS   +   I
Sbjct: 13  QCMELNFY-KIPDNLPFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 260 PEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSL 318
            +       +L  L L+ N +Q  L    F  L++LQ L              +    +L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 319 EGLYLNNNSLL-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI----LDISD 373
           + L + +N +   K+P +  NLT L+++ + +N ++     +   L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL------SYNRLNGS 427
           N ++   P  F  + + ++ L  N     + +      + L    L      +   L   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 428 IPDWVDGLSQLSHLILGHNNLEGEVSVQ---LCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
               ++GL  L+        L+  +         L  +    L +  +   +     N  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFG 305

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                  +    +   +         F   +    F               L  L  LDL
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----------LPSLEFLDL 354

Query: 545 SCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
           S N L   G         T ++ L+LS N +  ++ S F  L+ +E LD  ++ L     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 603 H-QLVELKTLEVFSVAYNNLS 622
               + L+ L    +++ +  
Sbjct: 414 FSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (348), Expect = 2e-34
 Identities = 100/590 (16%), Positives = 169/590 (28%), Gaps = 144/590 (24%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            S + LD+S N L   + S        ++ L LS    Q   ++E               
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------------- 69

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
                              L+TL L+ N                     +  +       
Sbjct: 70  -----------GAYQSLSHLSTLILTGNP--------------------IQSL------A 92

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
                  + L+ L  V  +LA     PI   K L++L+V++N I+     +    L +L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQI----LDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 278
             + S N +     +    +  + +    LDLS N +   I        + L  L L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLHKLTLRNN 210

Query: 279 NLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
               ++       L  L+  +L    F  E        S+LEGL                
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL---------------C 255

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
           NLT  ++ +   ++    I   F  L ++    +    I   +    +    + + L   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNC 314

Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQ 455
                          SL  L  + N+   +  +    L  L  L L  N L   G  S  
Sbjct: 315 KFGQF----PTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 456 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ 515
                 L+ LDLS N +   +   F                                   
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLG--------------------------------- 394

Query: 516 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNL 573
                               L  L  LD   + L   +       +L  +  L++SH + 
Sbjct: 395 --------------------LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLS 622
             +    F+ L  +E L ++ N            EL+ L    ++   L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (337), Expect = 5e-33
 Identities = 83/495 (16%), Positives = 160/495 (32%), Gaps = 73/495 (14%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 205
             + +DLS   +     ++   +  +L+ L L    +         S   L  L ++ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 206 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 265
           I+  + +     L SL         L        G++K L+ L++++N +          
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 266 GCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 324
              NL+ L LS+N +Q  ++  +   L  +  L L                     L L+
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLS 185

Query: 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDI------SDNNIS 377
            N  +  I        RL  + + NN     +       L  L++  +      ++ N+ 
Sbjct: 186 LNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 378 GSLPSCFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 434
               S    L   +I++  L+    +       F   +++ +  L    +   + D+   
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS-Y 302

Query: 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE-SYSNSS 493
                HL L +            +L  L+ L  ++N          D  +L     S + 
Sbjct: 303 NFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNG 358

Query: 494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 553
                             L  +                     + L  LDLS N +I  +
Sbjct: 359 ------------------LSFKGCCSQSDFG-----------TTSLKYLDLSFNGVI-TM 388

Query: 554 PPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
                 L +++ L+  H+NL      S F +L+++  LD+S+             L +LE
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 613 VFSVAYNNLSGEIPE 627
           V  +A N+       
Sbjct: 449 VLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 1e-30
 Identities = 74/399 (18%), Positives = 147/399 (36%), Gaps = 38/399 (9%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRI----LDVSSNQLTGSISSSPLVHLTSI 70
             +L +L+ L ++SN ++      +  +  + +    LD+S N +   I       +  +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RL 202

Query: 71  EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEITESHSLIAPKFQLNTL 125
            +L L NN+  + +    +   + L++      E +      +  +S         +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 126 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP 185
            L+                 ++    L  + +           N   + L LVN      
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQF 319

Query: 186 FRLPIHSHKR-------------------LRQLDVSNNNIRG-HIPVKIGDVLPSLYVFN 225
             L + S KR                   L  LD+S N +       +      SL   +
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 285
            S N +  ++ S+F  ++ L+ LD  +++L       + +   NL +L +S+ + +   F
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF 437

Query: 286 SRNF-NLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
           +  F  L++L+ L++ GN F         ++  +L  L L+   L    P    +L+ LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
            + M +N L+      F +L SLQ + +  N    S P 
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 58/338 (17%), Positives = 119/338 (35%), Gaps = 24/338 (7%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW------CMANMTSLRILDVSSNQ 54
           + +   +  V    +  L  L+   +   + R            +  + +L I +     
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 55  LTGSISSSPLV--HLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITES 112
           L   +     +   LT++    L +   +        F +  L++ N +  +      +S
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 113 HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTK 171
                    L  L+ +SN G        L     LE++DLS   ++     +      T 
Sbjct: 327 ---------LKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 172 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 231
           L+ L L  + +           ++L  LD  ++N++      +   L +L   + S    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-N 290
             +    F  +  L++L ++ N         +     NL FL LS   L+  L    F +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 492

Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
           L++LQ L +  N+          + +SL+ ++L+ N  
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
                     IP  +      + L+LS N L      +F +   ++ LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 603 HQLVELKTLEVFSVAYNNLSGEIPEW 628
                L  L    +  N +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (418), Expect = 1e-43
 Identities = 93/565 (16%), Positives = 175/565 (30%), Gaps = 70/565 (12%)

Query: 44  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 103
           +  + D  S   T    S P     +++ L LS N     I    L   + L++   +++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 104 EIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN 163
            I                              I     Y    LE++DLS   ++    +
Sbjct: 61  RIN----------------------------TIEGDAFYSLGSLEHLDLSDNHLS-SLSS 91

Query: 164 WLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
                 + L+ L L+ +            +   L+ L + N      I       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
                  +L      S  +++ +  L L  +     + E  A    ++++L L + NL  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 283 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342
             FS          ++    R      +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLN 264

Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHG 401
                  +  +    +   +  +++ L I    +   L + +  L  +K++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDW---VDGLSQLSHLILGHNNLE--GEVSVQL 456
            +      +  SL  LDLS N +                L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 457 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHE---SYSNSSSPDEQFEIFFSIEGHQGFLE 513
             L  L  LD+S N  H     C     +     S +          +   I      L+
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV------VKTCIPQTLEVLD 437

Query: 514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573
             N+ +  F+            L  L  L +S NKL   +P        +  + +S N L
Sbjct: 438 VSNNNLDSFSLF----------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLN 598
                  F  L  ++ + L  N  +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (399), Expect = 4e-41
 Identities = 99/511 (19%), Positives = 183/511 (35%), Gaps = 45/511 (8%)

Query: 3   SCEVNGVV--RSQGLCSL-----VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQL 55
           SC+ +GV   RS+   S+       ++ L ++ N +       +    +L++L + S+++
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 56  TGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL 115
             +I       L S+E L LS+N+    +S       S LK  N   N  +       SL
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL--GVTSL 118

Query: 116 IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                 L TL + +      I          L  +++  + +   + +  L++   +  L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHL 177

Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG--HIPVKIGDVLPSLYVFNNSMNALDG 233
            L     A    +       +R L++ + N+      P+ + +V   +       + L  
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 234 -------SIPSSFGNMKFLQILDLSNNHLT-------GEIPEHLAVGCVNLQFLALSNNN 279
                   +      +  ++  D + N L          + E   V  V ++ L +    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 280 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN---SLLGKIPRWL 336
           L   L +    L  ++ + +E ++             SLE L L+ N       K     
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 337 GNLTRLQYIIMPNNHLE--GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHL 394
           G    LQ +++  NHL            L +L  LDIS N       SC  P  ++ ++L
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417

Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV 454
           S   +   +K        +L  LD+S N L+ S       L +L  L +  N L+   ++
Sbjct: 418 SSTGIR-VVKTCIP---QTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK---TL 466

Query: 455 QLCE-LNQLQLLDLSNNNLHGPIPPCFDNTT 484
                   L ++ +S N L       FD  T
Sbjct: 467 PDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  153 bits (388), Expect = 9e-40
 Identities = 90/537 (16%), Positives = 189/537 (35%), Gaps = 59/537 (10%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            +++ LD+S N++T  I    L    +++ L+L ++     I  +  ++   L+  +  +
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
           N +    + S S   P   L  L+L  N            +  +L+ + + +++   E  
Sbjct: 84  NHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
                  T L  L +   SL       + S + +  L +  +     +     D+L S+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
                   L     S     +    +       +  + +      + L    L  + ++ 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE- 257

Query: 283 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342
                +  L  L       +  V E+ +   +  ++  L++    L   +      L ++
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL---PSCFHPL-SIKQVHLSKNM 398
           + I + N+ +          L SL+ LD+S+N +        +C     S++ + LS+N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 399 LHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 457
           L   Q          +L +LD+S N  +  +PD      ++  L L    +     V+ C
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTC 428

Query: 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 517
               L++LD+SNNNL           +               E++ S          +N 
Sbjct: 429 IPQTLEVLDVSNNNL----------DSFSLFLPRLQ------ELYIS----------RNK 462

Query: 518 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNL 573
                    +  +    +  +L  + +S N+ +  +P  I   LT +Q + L  N  
Sbjct: 463 ---------LKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 2e-39
 Identities = 73/463 (15%), Positives = 159/463 (34%), Gaps = 30/463 (6%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           SL  L+ L ++ N L          ++SL+ L++  N       +S   +LT+++ L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
           N      I        + L     +   ++         +     ++ L+L  +    F+
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLTLHLS-ESAFL 187

Query: 137 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL 196
              F      + Y++L    +   F    L  +     +  +    +       +   +L
Sbjct: 188 LEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
            +  +  + +                + + + +  D            ++ L +   +L 
Sbjct: 247 LRYILELSEVEFDD-------CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQS---L 312
                 +      ++ + + N+ +   +      +L +L++L L  N  V E  ++    
Sbjct: 300 -YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 313 SKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 370
               SL+ L L+ N L  + K    L  L  L  + +  N    P+P      + ++ L+
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +S   I   + +C  P +++ + +S N L              L  L +S N+L  ++PD
Sbjct: 417 LSSTGIR-VVKTCI-PQTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPD 468

Query: 431 WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
                  L  + +  N L+         L  LQ + L  N   
Sbjct: 469 AS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 3e-38
 Identities = 85/451 (18%), Positives = 163/451 (36%), Gaps = 38/451 (8%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           ++ LD+S N I  +I         +L V     + ++     +F ++  L+ LDLS+NHL
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLS 313
           +  +         +L++L L  N  Q    +  F NLTNLQ L++       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
             +SL  L +   SL     + L ++  + ++ +  +     + +    L S++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT----------LDLSYNR 423
            N++    S      +             L   +F     L+            D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 424 LNGSIPDWVDGLS--------QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 475
           L    P   D +S         +  L +    L  ++S     L +++ + + N+ +   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 476 IPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531
                 +      L  S +       +             L    + +     +    I 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEIL 383

Query: 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 591
               L  L+ LD+S N     +P       +++ LNLS   +   + +     + +E LD
Sbjct: 384 LT--LKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLD 437

Query: 592 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           +SNN L+      L  L+ L    ++ N L 
Sbjct: 438 VSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (360), Expect = 4e-36
 Identities = 74/440 (16%), Positives = 145/440 (32%), Gaps = 48/440 (10%)

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           + +   L+ L + ++ I   I       L SL   + S N L     S FG +  L+ L+
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEI 308
           L  N         L     NLQ L + N      +   +F  LT+L  L+++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368
            QSL     +  L L+ +     +  +   L+ ++Y+ + + +L           +    
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
           +       S      F+ L    + L + +L   L    F +C+     D + +  +   
Sbjct: 225 MKKLAFRGSVLTDESFNEL----LKLLRYILE--LSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TT 484
                    +  L +    L  ++S     L +++ + + N+ +         +      
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
           L  S +       +                                        L  L L
Sbjct: 339 LDLSENLMVEEYLKNSACKGA------------------------------WPSLQTLVL 368

Query: 545 SCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
           S N L  +      +  L  + +L++S N     +P +    + +  L+LS+  +   + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK 426

Query: 603 HQLVELKTLEVFSVAYNNLS 622
             +   +TLEV  V+ NNL 
Sbjct: 427 TCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 7e-36
 Identities = 74/401 (18%), Positives = 137/401 (34%), Gaps = 30/401 (7%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 303
             + D  +   T  IP  L      ++ L LS N +  ++   +     NLQ L L+ +R
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ 362
                  +     SLE L L++N L      W G L+ L+Y+ +  N      +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 363 LDSLQILDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEG-----------EVSVQLCELNQLQLLDLSN 469
            +     +  + D LS + +L L   NL                ++        L D S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N L   +    + + +       +   +       +    G +E             + Y
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 530 IYQG--KVLSLLSGLDLSCNKLIGHIPPQIG-NLTRIQTLNLSHNNLTGSIPST---FSN 583
                  +L  +  + +  +K +  +P     +L  ++ L+LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 584 LKHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNNLS 622
              +++L LS N L    K    L+ LK L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (313), Expect = 4e-30
 Identities = 66/453 (14%), Positives = 146/453 (32%), Gaps = 78/453 (17%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           + + E    +R      L  L EL I +  LR      + ++  +  L +  ++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
                 L+S+  L L +                                           
Sbjct: 189 EIFADILSSVRYLELRDT------------------------------------------ 206

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 180
            L     S    D    P            D S  ++       L  +  + +       
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC----- 261

Query: 181 SLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 240
                          L  L   N +    +         ++   +     L   + + + 
Sbjct: 262 --------------TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF---NLTNLQWL 297
            ++ ++ + + N+ +   +P   +    +L+FL LS N +       +       +LQ L
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 298 QLEGNRF--VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355
            L  N    + +  + L    +L  L ++ N+    +P       +++++ + +  +   
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRV- 424

Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
             V+ C   +L++LD+S+NN+  S         ++++++S+N L   L   + F    L+
Sbjct: 425 --VKTCIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLL 476

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
            + +S N+L        D L+ L  + L  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 58/265 (21%)

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
              D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG-PIPPC 479
            +R+N    D    L  L HL L  N+L    S     L+ L+ L+L  N      +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 539
           F N                                                     L+ L
Sbjct: 119 FPN-----------------------------------------------------LTNL 125

Query: 540 SGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
             L +   +    I       LT +  L +   +L      +  +++ +  L L  ++  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSG 623
             +      L ++    +   NL+ 
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLAR 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (399), Expect = 1e-41
 Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 24/399 (6%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
                +   + ++L  ++ S   +   ++ LDLS N L+      LA     L+ L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSS 67

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
           N L         +L+ L+ L L  N       Q L    S+E L+  NN++  ++     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLS 395
                + I + NN +     ++      +Q LD+  N I   +         +++ ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 455
            N ++  +K       + L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 456 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ 515
           L     L+  DL  N  H      F +           +  +   +    E         
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK---LTGQNEEECTVPTLG 289

Query: 516 NHEIFEFTTKNIAYIYQGKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573
           ++  +        +  +   L     + L    ++    +  +  N  R + ++      
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQY 348

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
              I       +   +L+     L+ ++ +       L+
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (324), Expect = 8e-32
 Identities = 69/487 (14%), Positives = 150/487 (30%), Gaps = 47/487 (9%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           +    +   +  + L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
           +N          L + S L+  +  NN ++         +     + TL  ++N      
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQE--------LLVGPSIETLHAANNNISRVS 115

Query: 137 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKR 195
             +        + + L++ K+     +      ++++ L L  + +    F     S   
Sbjct: 116 CSRG----QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           L  L++  N I   +  ++      L   + S N L   +   F +   +  + L NN L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
              I + L     NL+   L  N        R+F   N +   +          Q+  +C
Sbjct: 227 V-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 375
           +     +            +   L  L                   +     +L    + 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIAL-------------------KRKEHALLSGQGSE 324

Query: 376 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 435
                    +    +++   K      +         + +TL+     L+  + +     
Sbjct: 325 TERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 436 SQLSHLILGHNNLEGEVSVQLCELNQLQLLD-LSNNNLHGPIPPCFDNTTLHESYSNSSS 494
           ++L   +        E+     E + LQLL  +        +            +     
Sbjct: 384 AELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 495 PDEQFEI 501
            + Q   
Sbjct: 443 KETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 6e-31
 Identities = 78/506 (15%), Positives = 155/506 (30%), Gaps = 67/506 (13%)

Query: 34  SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 93
           ++     N    +I  V+ + L     +S      +++EL LS N     IS   L  ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 94  RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 153
           +L++ N  +N +  E  +  SL      L TL L++NY                    + 
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLS----TLRTLDLNNNY--------------------VQ 93

Query: 154 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 213
            +                +ETL   N++++   R+     +  + + ++NN I     + 
Sbjct: 94  EL-----------LVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 214 IGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 271
            G    +  L +  N ++ ++        +   L+ L+L  N +  ++   +      L+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 272 FLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-L 329
            L LS+N L        F +   + W+ L  N+ V  I ++L    +LE   L  N    
Sbjct: 195 TLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 330 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-- 387
           G +  +     R+Q +      ++        +     +                  L  
Sbjct: 252 GTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 388 --SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
               +   LS      +       N +    +D    +    I            L    
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 446 NNLEGEVS---VQLCELNQLQLLDLSNNNLHGP---IPPCFDNTTLHESYSNSSSP--DE 497
             L+ +VS       EL+      +    L        P      + + Y          
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 498 QFEIFFSIEGHQGFLEKQNHEIFEFT 523
           Q       + +Q    +   E     
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLK 455

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (315), Expect = 1e-30
 Identities = 58/464 (12%), Positives = 139/464 (29%), Gaps = 29/464 (6%)

Query: 165 LLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 224
           + +N  + +   + + SL         S   +++LD+S N +       +      L + 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELL 63

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284
           N S N L         ++  L+ LDL+NN++  E+         +++ L  +NNN+    
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNIS--- 112

Query: 285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG-KIPRWLGNLTRLQ 343
                     + + L  N+            S ++ L L  N +          +   L+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ 402
           ++ +  N +   +  +      L+ LD+S N ++  +   F     +  + L  N L   
Sbjct: 173 HLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 403 LKRGTFFNCSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 461
           +++       +L   DL  N  + G++ D+     ++  +      ++        E   
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTV 285

Query: 462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 521
             L             P  D     +   ++     Q      +E       +      +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALL-SGQGSETERLE--CERENQARQREID 342

Query: 522 FTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 579
              +    +             L+     L   +         +             +  
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQH 401

Query: 580 TFSNLKHVESLDLSNNKLNGK-IPHQLVELKTLEVFSVAYNNLS 622
                  ++ L     +     +  Q V+   +  + +  +  +
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 1e-27
 Identities = 54/351 (15%), Positives = 113/351 (32%), Gaps = 55/351 (15%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
           EI Q+ ++    +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN--TT 484
            +           ++ L +N +     +     +++Q LDL  N +             T
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 485 LHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
           L       N                                   I  +    V + L  L
Sbjct: 171 LEHLNLQYN----------------------------------FIYDVKGQVVFAKLKTL 196

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
           DLS NK +  + P+  +   +  ++L +N L   I       +++E  DL  N  +    
Sbjct: 197 DLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 603 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI 653
                 K   V +VA   +  ++     +  T     + G      LP P 
Sbjct: 255 RDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 2e-25
 Identities = 49/344 (14%), Positives = 115/344 (33%), Gaps = 52/344 (15%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           N    +  ++  +     +        +++ L L+ N L       L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 409
           N L   +      L +L+ LD+++N +   L       SI+ +H + N     + R +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANN----NISRVSCS 117

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLS 468
                  + L+ N++           S++ +L L  N ++    +      + L+ L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 469 NNNLHGPIPPCFDNTTLHE---SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 525
            N ++  +        L     S +  +    +F+                         
Sbjct: 178 YNFIYD-VKGQVVFAKLKTLDLSSNKLAFMGPEFQS------------------------ 212

Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL-TGSIPSTFSNL 584
                      + ++ + L  NKL+  I   +     ++  +L  N    G++   FS  
Sbjct: 213 ----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 585 KHVESLDLSNNK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           + V+++     K L G+   +          +    +L     +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486
           +I +     ++     +  ++L+  ++        ++ LDLS N L           T  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 546
                                          E+   ++  +      + LS L  LDL+ 
Sbjct: 59  -----------------------------KLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
           N +      ++     I+TL+ ++NN++    S     K+   + L+NNK+         
Sbjct: 90  NYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEG 141

Query: 607 ELKTLEVFSVAYNNLS 622
               ++   +  N + 
Sbjct: 142 CRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 32/285 (11%), Positives = 71/285 (24%), Gaps = 15/285 (5%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
           G      L+ L ++SN L   +     +   +  + + +N+L   I  + L    ++E  
Sbjct: 186 GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHF 242

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L  N F      +      R++    +  +      E    +                 
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED---- 298

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFP---NWLLENNTKLETLFLVNDSLAGPFRLPI 190
             +   F      L+  + + +   G          EN  +   +  + +          
Sbjct: 299 --LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
              +    L+     +              L             +  +      LQ+L  
Sbjct: 357 LRKQAKITLEQKKKALD-EQVSNGRRAHAELDG-TLQQAVGQIELQHATEEQSPLQLLRA 414

Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
                     E  +V    ++   +  +     L   N  L  L 
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLN 458

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (376), Expect = 1e-39
 Identities = 69/407 (16%), Positives = 144/407 (35%), Gaps = 64/407 (15%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
             +L      +N +         ++       L    +T  + +       ++  L ++ 
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAG 53

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
             +          LTNL++L L GN+     P  LS    L  LY+  N +       L 
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQ 107

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
           NLT L+ + +  +++    P     L  +  L++  N+    L    +   +  + ++++
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 457
            +          N + L +L L+YN++    P  +  L+ L +     N +       + 
Sbjct: 166 KVK---DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218

Query: 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQ 515
            + +L  L + NN +   + P  + + L      +N      Q     +++         
Sbjct: 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTN------QISDINAVKD-------- 263

Query: 516 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 575
                               L+ L  L++  N+ I  I   + NL+++ +L L++N L  
Sbjct: 264 --------------------LTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGN 301

Query: 576 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
                   L ++ +L LS N +    P  L  L  ++    A   + 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (356), Expect = 7e-37
 Identities = 73/363 (20%), Positives = 128/363 (35%), Gaps = 34/363 (9%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L       +    +   +      + S+  L V+  ++    S   + +LT++E L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           L+ N       + PL N  +L       N+I  +I+   +L      L  L L+ +    
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT----NLRELYLNEDNISD 124

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
                 L     +  ++L       +     L N T L  L +    +      PI +  
Sbjct: 125 ISPLANL---TKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLT 177

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
            L  L ++ N I    P+     L     + N +  +     +   NM  L  L + NN 
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK 232

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           +T   P         L +L +  N +     +   +LT L+ L +  N+        L+ 
Sbjct: 233 ITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
            S L  L+LNNN L  +    +G LT L  + +  NH+    P     L  +   D ++ 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 375 NIS 377
            I 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 3e-34
 Identities = 81/430 (18%), Positives = 153/430 (35%), Gaps = 87/430 (20%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            +L  L    NQ+       P   L      +L        ++ E L     +       
Sbjct: 3   ATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
            ++                +  +   +N                LEY++L+  ++    P
Sbjct: 54  EKVA--------------SIQGIEYLTN----------------LEYLNLNGNQITDISP 83

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
              L N  KL  L++  + +       + +   LR+L ++ +NI    P+     L  +Y
Sbjct: 84  ---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLAN---LTKMY 135

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
             N   N    S  S   NM  L  L ++ + +    P  +A    +L  L+L+ N ++ 
Sbjct: 136 SLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIED 191

Query: 283 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342
              S   +LT+L +     N+     P  ++  + L  L + NN +    P  L NL++L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 402
            ++ +  N +          L  L++L++  N IS  +                      
Sbjct: 246 TWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISV-------------------- 282

Query: 403 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 462
                  N S L +L L+ N+L     + + GL+ L+ L L  N++       L  L+++
Sbjct: 283 -----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 463 QLLDLSNNNL 472
              D +N  +
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 2e-32
 Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 27/341 (7%)

Query: 147 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 206
                L    +         E    +  L +  + +A      I     L  L+++ N I
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQI 78

Query: 207 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 266
               P+     L  L       N +  +  S+  N+  L+ L L+ ++++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 326
              +  L L  N+    L S   N+T L +L +  ++     P  ++  + L  L LN N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 327 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 386
            +    P  L +LT L Y     N +    P     +  L  L I +N I+   P     
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 387 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
             +  + +  N +          + + L  L++  N+++      ++ LSQL+ L L +N
Sbjct: 244 -QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNN 297

Query: 447 NLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487
            L  E    +  L  L  L LS N++   I P    + +  
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 3e-25
 Identities = 60/354 (16%), Positives = 129/354 (36%), Gaps = 76/354 (21%)

Query: 270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 329
              LA     +   +F  + +L       L+       +     +  S+  L +    + 
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 330 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389
             I   +  LT L+Y+ +  N +    P     L  L  L I  N I+  + +       
Sbjct: 57  ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA------- 105

Query: 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
                               N ++L  L L+ + ++   P  +  L+++  L LG N+  
Sbjct: 106 ------------------LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL 145

Query: 450 GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ 509
            ++S  L  +  L  L ++ + +   + P  + T L+                       
Sbjct: 146 SDLSP-LSNMTGLNYLTVTESKVKD-VTPIANLTDLYS---------------------- 181

Query: 510 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 569
             L    ++I     ++I+ +     L+ L       N++    P  + N+TR+ +L + 
Sbjct: 182 --LSLNYNQI-----EDISPLAS---LTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623
           +N +T   P   +NL  +  L++  N+++    + + +L  L++ +V  N +S 
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 9e-22
 Identities = 59/297 (19%), Positives = 116/297 (39%), Gaps = 50/297 (16%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
           N +     L +L +L+ELY+  +++    P  +AN+T +  L++ +N     +  SPL +
Sbjct: 98  NKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSN 153

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
           +T +  L ++ +  +    + P+ N + L   +   N+I+ +I+   SL      L+  +
Sbjct: 154 MTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIE-DISPLASLT----SLHYFT 205

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 186
              N          + +   L  + + + K+    P   L N ++L  L +  + ++   
Sbjct: 206 AYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN 259

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
              +    +L+ L+V +N I                           S  S   N+  L 
Sbjct: 260 --AVKDLTKLKMLNVGSNQI---------------------------SDISVLNNLSQLN 290

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 303
            L L+NN L  E  E +  G  NL  L LS N++         +L+ +         
Sbjct: 291 SLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 46/261 (17%)

Query: 366 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
              L      I+  +          +  L K  +   +   T     S+  L ++  ++ 
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA 57

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 485
            SI   ++ L+ L +L L  N +       L  L +L  L +  N +   I    + T L
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTNL 112

Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
            E                        L      I      +I+ +     L+ +  L+L 
Sbjct: 113 RE------------------------LYLNEDNI-----SDISPLAN---LTKMYSLNLG 140

Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
            N  +  + P + N+T +  L ++ + +    P   +NL  + SL L+ N++    P  L
Sbjct: 141 ANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L 195

Query: 606 VELKTLEVFSVAYNNLSGEIP 626
             L +L  F+   N ++   P
Sbjct: 196 ASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 3e-15
 Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 73/269 (27%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
            L ++  L  L +  + ++   P  +AN+T L  L ++ NQ+      SPL  LTS+   
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYF 204

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
               N       + P+ N +RL      NN+I  +++   +L     QL  L + +N   
Sbjct: 205 TAYVNQIT---DITPVANMTRLNSLKIGNNKIT-DLSPLANLS----QLTWLEIGTNQ-- 254

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                             +S I          +++ TKL+ L + ++ ++      +++ 
Sbjct: 255 ------------------ISDIN--------AVKDLTKLKMLNVGSNQISDI--SVLNNL 286

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L  L ++NN +                                 G +  L  L LS N
Sbjct: 287 SQLNSLFLNNNQL-------------------------GNEDMEVIGGLTNLTTLFLSQN 321

Query: 254 HLTGEIP-EHLAVGCVNLQFLALSNNNLQ 281
           H+T   P   L      +     +N  ++
Sbjct: 322 HITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           L+ L  L+L+ N+ I  I P + NL ++  L +  N +T    S   NL ++  L L+ +
Sbjct: 65  LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
            ++   P  L  L  +   ++  N+   ++  
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (374), Expect = 3e-38
 Identities = 98/439 (22%), Positives = 174/439 (39%), Gaps = 41/439 (9%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
           G+  L +L ++  ++N L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 117

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L NN       ++PL N + L      +N I  +I+    L      L  LS  +    
Sbjct: 118 TLFNNQIT---DIDPLKNLTNLNRLELSSNTIS-DISALSGLT----SLQQLSFGNQ--- 166

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                K L +   LE +D+S  K++       L   T LE+L   N+ ++     P+   
Sbjct: 167 -VTDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT--PLGIL 220

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
             L +L ++ N ++    +     L +L   + + N +    P     +  L  L L  N
Sbjct: 221 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
            ++   P     G   L  L L+ N L+    S   NL NL +L L  N      P  +S
Sbjct: 276 QISNISPLA---GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VS 328

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
             + L+ L+  NN +       L NLT + ++   +N +    P     L  +  L ++D
Sbjct: 329 SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 433
              + +  +    +SI      KN+    +   T  +  S    D+++N  +    +   
Sbjct: 385 QAWTNAPVNYKANVSIPN--TVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSY 441

Query: 434 GLSQLSHLILGHNNLEGEV 452
             SQ   +  G     G V
Sbjct: 442 TFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (370), Expect = 8e-38
 Identities = 85/455 (18%), Positives = 167/455 (36%), Gaps = 66/455 (14%)

Query: 40  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99
             +       +    +T ++       L  +  L       +   S++ +   + L   N
Sbjct: 21  TALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 74

Query: 100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 159
             NN++  +IT   +L     +L  + +++N                     ++ I    
Sbjct: 75  FSNNQLT-DITPLKNLT----KLVDILMNNNQ--------------------IADITP-- 107

Query: 160 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
                 L N T L  L L N+ +      P+ +   L +L++S+N I     +     L 
Sbjct: 108 ------LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLT 156

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
           SL   +      D        N+  L+ LD+S+N ++      LA    NL+ L  +NN 
Sbjct: 157 SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQ 210

Query: 280 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL 339
           +     +    LTNL  L L GN+       +L+  ++L  L L NN +    P  L  L
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 340 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 399
           T+L  + +  N +    P     L +L  L++++N +   +    +  ++  + L  N +
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNI 321

Query: 400 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 459
                     + + L  L    N+++      +  L+ ++ L  GHN +       L  L
Sbjct: 322 SDI---SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 460 NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 494
            ++  L L++            N ++  +  N + 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (365), Expect = 4e-37
 Identities = 98/457 (21%), Positives = 162/457 (35%), Gaps = 64/457 (14%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
                +     L   ++     +      ++  L      I+    V   + L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGV---EYLNNLTQIN 74

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 285
            S N L    P    N+  L  + ++NN +    P        NL  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITD--I 127

Query: 286 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
               NLTNL  L+L  N        +LS  +SL+ L   N  +    P  L NLT L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 346 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 405
            + +N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 406 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 465
           GT  + ++L  LDL+ N+++   P  + GL++L+ L LG N +       L  L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 466 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 525
           +L+ N L   I P  +   L                                        
Sbjct: 293 ELNENQLED-ISPISNLKNL--------------------------------TYLTLYFN 319

Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
           NI+ I     L+ L  L    NK+       + NLT I  L+  HN ++   P   +NL 
Sbjct: 320 NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
            +  L L++        +    +            L 
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (364), Expect = 5e-37
 Identities = 87/440 (19%), Positives = 156/440 (35%), Gaps = 66/440 (15%)

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
              +     +  +   N+   +     D + +L      + ++DG        +  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQI 73

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 308
           + SNN LT   P         L  + ++NN +     +   NLTNL  L L  N+     
Sbjct: 74  NFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368
           P  L   ++L  L L++N++       L  LT LQ +   N   +         L +L+ 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLER 181

Query: 369 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
           LDIS N +S    S    L +++ +  + N +            ++L  L L+ N+L   
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKD- 235

Query: 428 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487
               +  L+ L+ L L +N +       L  L +L  L L  N +   I P    T L  
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTN 291

Query: 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547
              N +                                 +  I     L  L+ L L  N
Sbjct: 292 LELNEN--------------------------------QLEDISPISNLKNLTYLTLYFN 319

Query: 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 607
            +    P  + +LT++Q L   +N ++    S+ +NL ++  L   +N+++   P  L  
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 608 LKTLEVFSVAYNNLSGEIPE 627
           L  +    +     +     
Sbjct: 374 LTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (346), Expect = 1e-34
 Identities = 83/390 (21%), Positives = 142/390 (36%), Gaps = 37/390 (9%)

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 296
            +   +       L   ++T  + +        +  L      ++         L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
           +    N+     P  L   + L  + +NNN +    P  L NLT L  + + NN +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 357 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 416
           P     L +L  L++S N IS  + +     S++Q+     +   +       N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLK----PLANLTTLER 181

Query: 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
           LD+S N++  S    +  L+ L  LI  +N +       L  L  L  L L+ N L   I
Sbjct: 182 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I 236

Query: 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 536
                 T L +    ++           I               +     I+ I     L
Sbjct: 237 GTLASLTNLTDLDLANN----------QISNLAPLSGLTKLTELKLGANQISNISPLAGL 286

Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
           + L+ L+L+ N+L    P  I NL  +  L L  NN++   P   S+L  ++ L   NNK
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 597 LNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
           ++      L  L  +   S  +N +S   P
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 3e-31
 Identities = 85/371 (22%), Positives = 149/371 (40%), Gaps = 36/371 (9%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
           N +     L +L +L  L + +N +    P  + N+T+L  L++SSN ++     S L  
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSG 154

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
           LTS+++L   N        L+PL N + L+  +  +N++  +I+    L      L +L 
Sbjct: 155 LTSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVS-DISVLAKLT----NLESLI 205

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 186
            ++N          L    +L+ + L+  ++  +     L + T L  L L N+ ++   
Sbjct: 206 ATNNQISDITPLGIL---TNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNL- 258

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
             P+    +L +L +  N I    P+     L +L     + N L+   P    N+K L 
Sbjct: 259 -APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 306
            L L  N+++   P         LQ L   NN +     S   NLTN+ WL    N+   
Sbjct: 313 YLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
             P  L+  + +  L LN+ +       +  N++    +      L  P         S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 367 QILDISDNNIS 377
              DI+ N  S
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 55/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
            L  L +L+ L   +N +    P  +  +T+L  L ++ NQL        L  LT++ +L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIGTLASLTNLTDL 248

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L+NN      +L PL   ++L       N+I   I+    L      L  L L+ N   
Sbjct: 249 DLANNQIS---NLAPLSGLTKLTELKLGANQIS-NISPLAGLT----ALTNLELNEN--- 297

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                  + +  +L Y+ L    ++   P   + + TKL+ LF  N+ ++      + + 
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANL 352

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
             +  L   +N I    P+     L  +     +  A   +  +   N+     +     
Sbjct: 353 TNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
            L    P  ++    +     ++ N         ++  +    +      F G + Q L
Sbjct: 410 ALI--APATIS-DGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 9e-17
 Identities = 55/307 (17%), Positives = 104/307 (33%), Gaps = 73/307 (23%)

Query: 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 376
            L    +  ++ + +I      L      ++   ++   +      LD +  L      I
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 377 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 436
             S+                               ++L  ++ S N+L    P  +  L+
Sbjct: 59  K-SIDG-------------------------VEYLNNLTQINFSNNQLTDITP--LKNLT 90

Query: 437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 496
           +L  +++ +N +       L  L  L  L L NN +   I P  + T L           
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNL----------- 136

Query: 497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 556
                                   E ++  I+ I     L+ L  L    N++    P  
Sbjct: 137 ---------------------NRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-- 172

Query: 557 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616
           + NLT ++ L++S N ++    S  + L ++ESL  +NN+++   P  L  L  L+  S+
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 617 AYNNLSG 623
             N L  
Sbjct: 229 NGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
           L    ++ +  I  I      L       L   N+T ++    ++L  V +L      + 
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIP 626
            K    +  L  L   + + N L+   P
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTDITP 85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  142 bits (359), Expect = 2e-37
 Identities = 54/376 (14%), Positives = 102/376 (27%), Gaps = 79/376 (21%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS-RNFNLT 292
                    +     D +  H              N Q    +   L+       +    
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
               L+L       + P    + S L+ + ++   L  ++P  +     L+ + +  N L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPL 139

Query: 353 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 412
              +P     L+ L+ L I        LP       +     S                 
Sbjct: 140 RA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASGE----------HQGLV 183

Query: 413 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 472
           +L +L L +  +  S+P  +  L  L  L + ++ L   +   +  L +L+ LDL     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 473 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 532
               PP F                                                    
Sbjct: 242 LRNYPPIFGG-------------------------------------------------- 251

Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
               + L  L L     +  +P  I  LT+++ L+L        +PS  + L     + +
Sbjct: 252 ---RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 593 SNNKLNGKIPHQLVEL 608
             +       H+ V  
Sbjct: 309 PPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (312), Expect = 3e-31
 Identities = 50/308 (16%), Positives = 96/308 (31%), Gaps = 41/308 (13%)

Query: 152 LSHIKMNGEFPNWLLENNTKLETLFLVNDSL-AGPFRLPIHSHKRLRQLDVSNNNIRGHI 210
             +   N     W   N+   +       +L A    L   +      L++ +  +    
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 211 PVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
           P +    L  L         L   +P +      L+ L L+ N L   +P  +A     L
Sbjct: 97  PDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRL 152

Query: 271 QFLALSNNNL---------QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 321
           + L++                     +  L NLQ L+LE       +P S++   +L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 381
            + N+ L   +   + +L +L+ + +         P  F     L+ L + D +   +LP
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 382 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL 441
              H                          + L  LDL        +P  +  L     +
Sbjct: 271 LDIH------------------------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 442 ILGHNNLE 449
           ++  +   
Sbjct: 307 LVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 2e-29
 Identities = 57/303 (18%), Positives = 97/303 (32%), Gaps = 21/303 (6%)

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
            H       L    +         +       Y  + +             N    QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309
            +   L                 L L +  L      + F L++LQ + ++    + E+P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHLE--------GPIPVEF 360
            ++ + + LE L L  N L   +P  + +L RL+ + I     L              E 
Sbjct: 121 DTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
             L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LDL
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDL 236

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
                  + P    G + L  LIL   +    + + +  L QL+ LDL        +P  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 480 FDN 482
              
Sbjct: 297 IAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (295), Expect = 5e-29
 Identities = 48/339 (14%), Positives = 93/339 (27%), Gaps = 54/339 (15%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           + +  + L  +G+  +      LS+         N      +      N    Q      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 350 NHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
             L+     +E         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468
           F  S L  + +    L   +PD +   + L  L L  N L   +   +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 528
                  +P    +T     +    +          +E     +      I         
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQS-----LRLEWTG--IRSLPASIAN------- 204

Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
                  L  L  L +  + L   + P I +L +++ L+L       + P  F     ++
Sbjct: 205 -------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 589 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
            L L +      +P  +  L  LE   +        +P 
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (282), Expect = 2e-27
 Identities = 48/328 (14%), Positives = 88/328 (26%), Gaps = 62/328 (18%)

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
           +G         S  E LY   ++ L      L    R         H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLHGQLKR--GTFFNCSSLVTLDL 419
           + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
               L   +PD +   + L  L L  N L   +   +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 539
             +T     +                                              L  L
Sbjct: 170 LASTDASGEHQG--------------------------------------------LVNL 185

Query: 540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
             L L    +   +P  I NL  +++L + ++ L+ ++     +L  +E LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 600 KIPHQLVELKTLEVFSVAYNNLSGEIPE 627
             P        L+   +   +    +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 58/338 (17%), Positives = 106/338 (31%), Gaps = 55/338 (16%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
            L   Q  Y A  +      W  AN  + +I   +   L  +              L L 
Sbjct: 31  VLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELR 89

Query: 77  NNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 135
           +      P   +  F  S L+    +   +  E+ ++   +     L TL+L+ N     
Sbjct: 90  SVPLPQFP---DQAFRLSHLQHMTIDAAGLM-ELPDT---MQQFAGLETLTLARNPLR-- 140

Query: 136 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
             P  +   + L  + +       E P  L   +   E   LVN                
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN---------------- 184

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           L+ L +    IR                          S+P+S  N++ L+ L + N+ L
Sbjct: 185 LQSLRLEWTGIR--------------------------SLPASIANLQNLKSLKIRNSPL 218

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
           +  +   +      L+ L L       +          L+ L L+    +  +P  + + 
Sbjct: 219 S-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 353
           + LE L L     L ++P  +  L     I++P +   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 46/271 (16%), Positives = 82/271 (30%), Gaps = 62/271 (22%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L HLQ + I +  L   LP  M     L  L ++ N L  ++ +S +  L  + EL 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELS 156

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF--QLNTLSLSSNYG 132
           +                   L        E+   +  + +    +    L +L L     
Sbjct: 157 IRAC--------------PELT-------ELPEPLASTDASGEHQGLVNLQSLRLEWT-- 193

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP--I 190
                                 I+     P   + N   L++L + N  L+    L   I
Sbjct: 194 ---------------------GIR---SLPAS-IANLQNLKSLKIRNSPLSA---LGPAI 225

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN-NSMNALDGSIPSSFGNMKFLQILD 249
           H   +L +LD+       + P   G     L        + L  ++P     +  L+ LD
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLD 283

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 280
           L        +P  +A        + +  +  
Sbjct: 284 LRGCVNLSRLPSLIA-QLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 5   EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
            +     S     LV+LQ L +    +R SLP  +AN+ +L+ L + ++ L+ ++  + +
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-I 225

Query: 65  VHLTSIEELMLSNN 78
            HL  +EEL L   
Sbjct: 226 HHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSS-NQLTGSISSSPLVHLTSIEEL 73
           +  L  L+EL +       + P        L+ L +   + L  ++    +  LT +E+L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLD-IHRLTQLEKL 282

Query: 74  MLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIK 106
            L       ++P  +  L       I     +   
Sbjct: 283 DLRGCVNLSRLPSLIAQL---PANCIILVPPHLQA 314

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (353), Expect = 1e-35
 Identities = 68/362 (18%), Positives = 127/362 (35%), Gaps = 51/362 (14%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 304
           + +          +PE +       + L L  N ++  L    F +  +L+ L+L  N  
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
               P + +   +L  L L +N L          L+ L  + +  N +   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           +L+ L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC-FDN 482
           +N         L +L  L + H      ++        L  L +++ NL   +P     +
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRH 246

Query: 483 ----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
                 L+ SY+  S+                                          L 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSML----------------------------------HELL 272

Query: 538 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
            L  + L   + +  + P     L  ++ LN+S N LT    S F ++ ++E+L L +N 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 597 LN 598
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (334), Expect = 4e-33
 Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 31/302 (10%)

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
           R +          +P  I      L +  N +  L+      F +   L+ L+L+ N ++
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVS 69

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQ---GHLF-----------SRNF----------NLT 292
             +         NL+ L L +N L+     +F           S N           +L 
Sbjct: 70  -AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
           NL+ L++  N  V    ++ S  +SLE L L   +L       L +L  L  + + + ++
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 353 EGPIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 411
                  F +L  L++L+IS      ++ P+C + L++  + ++   L   +      + 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL 247

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
             L  L+LSYN ++      +  L +L  + L    L          LN L++L++S N 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 472 LH 473
           L 
Sbjct: 308 LT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (330), Expect = 1e-32
 Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 19/311 (6%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDV 201
           +   +DL   ++          +   LE L L  + +     G F    ++   LR L +
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGL 87

Query: 202 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 261
            +N ++  IP+ +   L +L   + S N +   +   F ++  L+ L++ +N L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 262 HLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 318
               G  +L+ L L   NL        S   +L  L  L+L           S  +   L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
           + L +++   L  +         L  + + + +L     +    L  L+ L++S N IS 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 379 SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 437
              S  H L  ++++ L    L   ++   F   + L  L++S N+L          +  
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 438 LSHLILGHNNL 448
           L  LIL  N L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 2e-28
 Identities = 64/364 (17%), Positives = 124/364 (34%), Gaps = 68/364 (18%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
           T  R+LD+  N++  +++         +EEL L+ N     +      N   L+     +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
           N +K  I     +      L  L +S N                     +  +       
Sbjct: 90  NRLK-LIPL--GVFTGLSNLTKLDISEN--------------------KIVIL------L 120

Query: 163 NWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 217
           +++ ++   L++L + ++ L       F  L       L QL +   N+   IP      
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLTLEKCNLT-SIP------ 168

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
                               +  ++  L +L L + ++   I ++       L+ L +S+
Sbjct: 169 ------------------TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
                 +        NL  L +           ++     L  L L+ N +       L 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSK 396
            L RLQ I +    L    P  F  L+ L++L++S N ++    S FH + +++ + L  
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 397 NMLH 400
           N L 
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 5e-22
 Identities = 68/327 (20%), Positives = 123/327 (37%), Gaps = 47/327 (14%)

Query: 9   VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 68
            +      S  HL+EL +  N +    P    N+ +LR L + SN+L   I       L+
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104

Query: 69  SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 128
           ++ +L +S N   I +      +   LK     +N++   I  SH   +    L  L+L 
Sbjct: 105 NLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDL-VYI--SHRAFSGLNSLEQLTLE 160

Query: 129 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AG 184
                                 +L+ I      P   L +   L  L L + ++      
Sbjct: 161 KC--------------------NLTSI------PTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 185 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKI--GDVLPSLYVFNNSMNALDGSIPSSFGNM 242
            F+       RL+ L++S+      +      G  L SL + + ++ A+      +  ++
Sbjct: 195 SFK----RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP---YLAVRHL 247

Query: 243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEG 301
            +L+ L+LS N ++  I   +    + LQ + L    L   +    F  L  L+ L + G
Sbjct: 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSL 328
           N+             +LE L L++N L
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 37/266 (13%)

Query: 364 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
              + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN- 482
           ++   P   + L  L  L L  N L+         L+ L  LD+S N +   +   F + 
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
             L                          LE  ++++   + +  +       L+ L  L
Sbjct: 128 YNLKS------------------------LEVGDNDLVYISHRAFSG------LNSLEQL 157

Query: 543 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
            L     +  IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158 TLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 602 PHQLVELKTLEVFSVAYNNLSGEIPE 627
               +    L   S+ + NL+  +P 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 7e-11
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 81/267 (30%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
              L  L++L +   +L       ++++  L +L +    +  +I       L  ++ L 
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           +S+    +            L   +  +  +   +   +  +     L  L+LS N    
Sbjct: 207 ISHW-PYLDTMTPNCLYGLNLTSLSITHCNLT-AV--PYLAVRHLVYLRFLNLSYN---- 258

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
                            +S I         +L    +L+ + L                 
Sbjct: 259 ----------------PISTI------EGSMLHELLRLQEIQL----------------- 279

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
                      +   +                         P +F  + +L++L++S N 
Sbjct: 280 -------VGGQLA-VVE------------------------PYAFRGLNYLRVLNVSGNQ 307

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQ 281
           LT  + E +     NL+ L L +N L 
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (345), Expect = 4e-35
 Identities = 75/406 (18%), Positives = 140/406 (34%), Gaps = 78/406 (19%)

Query: 221 LYVFNNSMNALDGSIPSSF--GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 278
              ++  ++     +   F    +   +I+   N+ +  ++P  L      ++ L L++ 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 279 NLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
            ++  + +  F     +Q L +  N      P        L  L L  N L         
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 338 NLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396
           N  +L  + M NN+LE  I  + F    SLQ L +S N ++    S    L     ++S 
Sbjct: 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSY 195

Query: 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL 456
           N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + +  L
Sbjct: 196 NLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-L 244

Query: 457 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 516
                L  +DLS N L   +   F                                    
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVK---------------------------------- 270

Query: 517 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS 576
                              +  L  L +S N+ +  +      +  ++ L+LSHN+L   
Sbjct: 271 -------------------MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 577 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           +         +E+L L +N +   +        TL+  ++++N+  
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 2e-34
 Identities = 78/436 (17%), Positives = 148/436 (33%), Gaps = 103/436 (23%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
           L+ +     + +   +    F     +    + +   N+ +R  +P              
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP-------------- 61

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQG 282
                      +   + + +++L+L++  +  EI  +       +Q L +  N    L  
Sbjct: 62  ----------AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 283 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342
           H+F    N+  L  L LE N               L  L ++NN+L           T L
Sbjct: 111 HVFQ---NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 402
           Q + + +N L     V+   + SL   ++S N +S +L     P++++++  S N ++  
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAI---PIAVEELDASHNSIN-V 219

Query: 403 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 462
           ++         L  L L +N L  +   W+     L  + L +N LE  +     ++ +L
Sbjct: 220 VRGPVN---VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 463 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 522
           + L +SNN L   +                                              
Sbjct: 275 ERLYISNNRLVA-LNLYGQP---------------------------------------- 293

Query: 523 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
                        +  L  LDLS N  + H+        R++ L L HN++     ST  
Sbjct: 294 -------------IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 583 NLKHVESLDLSNNKLN 598
            LK+   L LS+N  +
Sbjct: 340 TLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (305), Expect = 6e-30
 Identities = 78/405 (19%), Positives = 144/405 (35%), Gaps = 50/405 (12%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L       +++I          +    + + +I+   ++ +   + ++ L     +E L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           L++   +  I          ++      N I+                            
Sbjct: 76  LNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY--------------------------- 107

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
            + P    +   L  + L    ++   P  +  N  KL TL + N++L         +  
Sbjct: 108 -LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
            L+ L +S+N +  H+ +    ++PSL+  N S N L     S+      ++ LD S+N 
Sbjct: 166 SLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           +   +   +    V L  L L +NNL     +   N   L  + L  N     +     K
Sbjct: 217 IN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
              LE LY++NN  L  +  +   +  L+ + + +NHL   +     Q D L+ L +  N
Sbjct: 271 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328

Query: 375 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
           +I     S  H L  K + LS N       R  F N +     D 
Sbjct: 329 SIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 1e-28
 Identities = 64/338 (18%), Positives = 120/338 (35%), Gaps = 45/338 (13%)

Query: 286 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
           S          + ++               ++ + +   N+++       L +  +++ +
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 346 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLK 404
            + +  +E      F    ++Q L +  N I    P  F  +  +  + L +N L   L 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 464
           RG F N   L TL +S N L     D     + L +L L  N L     V L  +  L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFH 190

Query: 465 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524
            ++S N L   +        L  S+++                                 
Sbjct: 191 ANVSYNLLST-LAIPIAVEELDASHNS--------------------------------- 216

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 584
             I  + +G V   L+ L L  N L       + N   +  ++LS+N L   +   F  +
Sbjct: 217 --INVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 585 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           + +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 52/297 (17%), Positives = 98/297 (32%), Gaps = 30/297 (10%)

Query: 332 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIK 390
           I   L        + +     +     E   L++ +I+   ++ +     +       ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 450
            ++L+   +  ++    F    ++  L + +N +    P     +  L+ L+L  N+L  
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 451 EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSN-SSSPDEQFEIFFSI 505
                     +L  L +SNNNL       F        L  S +  +          F  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

Query: 506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 565
                 L      I                   +  LD S N  I  +   +     +  
Sbjct: 192 NVSYNLLSTLAIPIA------------------VEELDASHNS-INVVRGPV--NVELTI 230

Query: 566 LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           L L HNNLT    +   N   +  +DLS N+L   + H  V+++ LE   ++ N L 
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486
            I   +        + +     +     +   LN  +++   N+ +              
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-------------- 57

Query: 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 546
                   P    + F  +E     L   + +I E  T   AY         +  L +  
Sbjct: 58  -----RKLPAALLDSFRQVE----LLNLNDLQIEEIDTYAFAY------AHTIQKLYMGF 102

Query: 547 NKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
           N  I ++PP +  N+  +  L L  N+L+      F N   + +L +SNN L        
Sbjct: 103 NA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 606 VELKTLEVFSVAYNNLS 622
               +L+   ++ N L+
Sbjct: 162 QATTSLQNLQLSSNRLT 178

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (329), Expect = 2e-33
 Identities = 59/296 (19%), Positives = 109/296 (36%), Gaps = 29/296 (9%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           LR +  S+  +   +P  +      L + NN +  +       F N+K L  L L NN +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKI 88

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
           + +I        V L+ L LS N L+     +         LQ L++  N          
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141

Query: 313 SKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 370
           +  + +  + L  N L            + +L YI + + ++   IP       SL  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198

Query: 371 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 429
           +  N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N+L   +P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 430 DWVDGLSQLSHLILGHNNLEG------EVSVQLCELNQLQLLDLSNNNL-HGPIPP 478
             +     +  + L +NN+               +      + L +N + +  I P
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (298), Expect = 2e-29
 Identities = 71/370 (19%), Positives = 119/370 (32%), Gaps = 88/370 (23%)

Query: 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 302
            L+++  S+  L  ++P+ L     +   L L NN +   +   +F NL NL  L L  N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 303 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ 362
           +     P + +    LE LYL+ N L  ++P  +                          
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQL-KELPEKM-------------------------- 119

Query: 363 LDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-GQLKRGTFFNCSSLVTLDLS 420
             +LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-C 479
              +  +IP  +     L+ L L  N +    +  L  LN L  L LS N++   +    
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS 235

Query: 480 FDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 535
             N      LH + +                                             
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGL----------------------------------AD 261

Query: 536 LSLLSGLDLSCNKLIGHIPPQ-------IGNLTRIQTLNLSHNNLTGSI--PSTFSNLKH 586
              +  + L  N  I  I                   ++L  N +      PSTF  +  
Sbjct: 262 HKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 587 VESLDLSNNK 596
             ++ L N K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 3e-28
 Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 27/267 (10%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDL 250
           K L  L + NN I   I       L  L   Y+  N +  L   +P +      LQ L +
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT------LQELRV 128

Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-F-NLTNLQWLQLEGNRFVGEI 308
             N +T ++ + +  G   +  + L  N L+        F  +  L ++++        I
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
           PQ L    SL  L+L+ N +  K+    L  L  L  + +  N +             L+
Sbjct: 187 PQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 368 ILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-----GQLKRGTFFNCSSLVTLDLSY 421
            L +++N +   +P        I+ V+L  N +           G     +S   + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 422 NRLNGSI--PDWVDGLSQLSHLILGHN 446
           N +      P     +   + + LG+ 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 3e-25
 Identities = 52/240 (21%), Positives = 99/240 (41%), Gaps = 19/240 (7%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L +L +S N ++  +P K+   L  L V  N +  +     S F  +  + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTN 155

Query: 254 HLT-GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QS 311
            L    I      G   L ++ +++ N+   +        +L  L L+GN+   ++   S
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI-TKVDAAS 211

Query: 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371
           L   ++L  L L+ NS+       L N   L+ + + NN L   +P        +Q++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270

Query: 372 SDNNISGSLPSCFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 423
            +NNIS    + F P        S   V L  N + + +++  TF        + L   +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 7e-20
 Identities = 58/317 (18%), Positives = 112/317 (35%), Gaps = 48/317 (15%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
               +LD+ +N++T  I      +L ++  L+L NN     IS        +L+      
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 103 NEIKAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161
           N++K        L     + L  L +  N     +        + +  V+L     N   
Sbjct: 110 NQLK-------ELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGT---N--- 155

Query: 162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 221
                     L++  + N +  G         K+L  + +++ NI   IP  +   L  L
Sbjct: 156 ---------PLKSSGIENGAFQGM--------KKLSYIRIADTNIT-TIPQGLPPSLTEL 197

Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
           ++  N +  +D    +S   +  L  L LS N ++  +         +L+ L L+NN L 
Sbjct: 198 HLDGNKITKVD---AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV 253

Query: 282 GHLFSRNFNLTNLQWLQLEGNRF------VGEIPQSLSKCSSLEGLYLNNNSL-LGKIPR 334
             +     +   +Q + L  N            P   +K +S  G+ L +N +   +I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 335 -WLGNLTRLQYIIMPNN 350
                +     + + N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 50/266 (18%)

Query: 365 SLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
              +LD+ +N I+      F  L  +  + L  N +  ++  G F     L  L LS N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-GPIPP-CFD 481
           L   +P+       L  L +  N +          LNQ+ +++L  N L    I    F 
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 482 N----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
                + +  + +N                                   I  I    +  
Sbjct: 169 GMKKLSYIRIADTN-----------------------------------ITTI-PQGLPP 192

Query: 538 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
            L+ L L  NK I  +       L  +  L LS N+++     + +N  H+  L L+NNK
Sbjct: 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 597 LNGKIPHQLVELKTLEVFSVAYNNLS 622
           L  K+P  L + K ++V  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 48/301 (15%), Positives = 106/301 (35%), Gaps = 44/301 (14%)

Query: 10  VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 69
           ++     +L +L  L + +N +    P   A +  L  L +S NQL       P     +
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKT 122

Query: 70  IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
           ++EL +  N     +        +++ +     N +K+   E+ +    K +L+ + ++ 
Sbjct: 123 LQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIAD 180

Query: 130 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
                                +++ I      P  L  +   L  L L  + +       
Sbjct: 181 T--------------------NITTI------PQGLPPS---LTELHLDGNKITKVDAAS 211

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           +     L +L +S N+I   +        P L   + + N L   +P    + K++Q++ 
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

Query: 250 LSNNHLT-----GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN--FNLTNLQWLQLEGN 302
           L NN+++        P        +   ++L +N +Q      +    +     +QL   
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

Query: 303 R 303
           +
Sbjct: 330 K 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
           L  +  S   L   +P  +        L+L +N +T      F NLK++ +L L NNK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
              P     L  LE   ++ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (327), Expect = 3e-33
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 18/258 (6%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
                +   + ++L  ++ S   +   ++ LDLS N L+ +I          L+ L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
           N L         +L+ L+ L L  N       Q L    S+E L+  NN++  ++     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLS 395
                + I + NN +     ++      +Q LD+  N I   +         +++ ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 455
            N ++  +K       + L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 456 LCELNQLQLLDLSNNNLH 473
           L     L+  DL  N  H
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (303), Expect = 4e-30
 Identities = 57/368 (15%), Positives = 113/368 (30%), Gaps = 76/368 (20%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           N    +  ++  +     +        +++ L L+ N L       L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 409
           N L   +      L +L+ LD+++N +                                 
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-----------------------------ELL 96

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
              S+ TL  + N ++  +           ++ L +N +     +     +++Q LDL  
Sbjct: 97  VGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 470 NNLHG-PIPPCFDN-TTLHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 525
           N +          +  TL       N                                  
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN---------------------------------- 179

Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
            I  +    V + L  LDLS NKL   + P+  +   +  ++L +N L   I       +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTF 645
           ++E  DL  N  +     +    K   V +VA   +  ++     +  T     + G   
Sbjct: 238 NLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYC 295

Query: 646 LCGLPLPI 653
              LP P 
Sbjct: 296 CEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 2e-25
 Identities = 60/353 (16%), Positives = 118/353 (33%), Gaps = 73/353 (20%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           +    +   +  + L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
           +N          L + S L+  +  NN ++         +     + TL  ++N      
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQE--------LLVGPSIETLHAANNN----- 110

Query: 137 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL 196
                          +S +                 + ++L N+ +     L      R+
Sbjct: 111 ---------------ISRVS---------CSRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
           + LD+  N I   +                              +   L+ L+L  N + 
Sbjct: 147 QYLDLKLNEID-TVN-----------------------FAELAASSDTLEHLNLQYNFIY 182

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKC 315
            ++   +      L+ L LS+N L        F +   + W+ L  N+ V  I ++L   
Sbjct: 183 -DVKGQV--VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 316 SSLEGLYLNNNSL-LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
            +LE   L  N    G +  +     R+Q +             E C + +L 
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 8e-25
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 25/289 (8%)

Query: 91  NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
           N +R KI    ++ +K  +     L    + +  L LS N     I    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELL 63

Query: 151 DLSH--IKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 208
           +LS   +    +      E+ + L TL L N+ +       +     +  L  +NNNI  
Sbjct: 64  NLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112

Query: 209 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268
            +    G    ++Y+ NN +  L        G    +Q LDL  N +       LA    
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
            L+ L L  N +             L+ L L  N+    +       + +  + L NN  
Sbjct: 170 TLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK- 225

Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
           L  I + L     L++  +  N       +      + ++  ++   + 
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 69/270 (25%)

Query: 360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
               +  +I  ++D+++  +L S                              ++  LDL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAW------------------------NVKELDL 41

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
           S N L+      +   ++L  L L  N L    ++ L  L+ L+ LDL+NN +   +   
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-LLVG 98

Query: 480 FDNTTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
               TLH + +N S     +                                        
Sbjct: 99  PSIETLHAANNNISRVSCSRG-------------------------------------QG 121

Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 597
              + L+ NK+        G  +R+Q L+L  N +   +     ++   +E L+L  N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
              +    V    L+   ++ N L+  +  
Sbjct: 182 Y-DVKG-QVVFAKLKTLDLSSNKLA-FMGP 208

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 41/222 (18%)

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467
             N +      ++ + L  ++         +  L L  N L    +  L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 527
           S+N L+         +TL                          L+  N+ + E      
Sbjct: 66  SSNVLYE-TLDLESLSTLRT------------------------LDLNNNYVQELLV--- 97

Query: 528 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 587
                      +  L  + N  I  +          + + L++N +T            V
Sbjct: 98  --------GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 588 ESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
           + LDL  N+++            TLE  ++ YN +  ++   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/316 (17%), Positives = 103/316 (32%), Gaps = 75/316 (23%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L     L+ L ++SN L  +L   + ++++LR LD+++N +        L+   SIE L 
Sbjct: 54  LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIETLH 105

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
            +NN     IS          K     NN+I   + +       + ++  L L  N  D 
Sbjct: 106 AANNN----ISRVSCSRGQGKKNIYLANNKIT-MLRD--LDEGCRSRVQYLDLKLNEIDT 158

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVNDSLAGPFRLPIHS 192
             F +       LE+++L +        N++  ++                         
Sbjct: 159 VNFAELAASSDTLEHLNLQY--------NFIYDVKGQVVF-------------------- 190

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
             +L+ LD+S+N +                            +   F +   +  + L N
Sbjct: 191 -AKLKTLDLSSNKLA--------------------------FMGPEFQSAAGVTWISLRN 223

Query: 253 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
           N L   I + L     NL+   L  N        R+F   N +   +          Q+ 
Sbjct: 224 NKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 313 SKCSSLEGLYLNNNSL 328
            +C+     +      
Sbjct: 281 EECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486
           +I +     ++     +  ++L+  ++        ++ LDLS N L           T  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 546
                                          E+   ++  +      + LS L  LDL+ 
Sbjct: 59  -----------------------------KLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
           N +      ++     I+TL+ ++NN++    S     K+   + L+NNK+         
Sbjct: 90  NYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEG 141

Query: 607 ELKTLEVFSVAYNNLS 622
               ++   +  N + 
Sbjct: 142 CRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 553 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
           I     N  R +   ++ ++L  ++ S   +  +V+ LDLS N L+      L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 613 VFSVAYNNLSGEIPE 627
           + +++ N L  E  +
Sbjct: 62  LLNLSSNVLY-ETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 3/116 (2%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
           G      L+ L ++SN L   +     +   +  + + +N+L   I  + L    ++E  
Sbjct: 186 GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHF 242

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
            L  N F      +      R++    +  +      E    +             
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (333), Expect = 4e-33
 Identities = 87/433 (20%), Positives = 126/433 (29%), Gaps = 92/433 (21%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNH 254
           +  +D+S N+I   +       L  L             I + +F  +  L IL L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 312
              ++      G  NL+ L L+  NL G + S NF   LT+L+ L L  N      P S 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 313 -SKCSSLEGLYLNNNSL----------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
                    L L  N +                 L  L+ +    M    L         
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 362 QLDSLQILDISDNNISGSLPSCFHPL--------------SIKQVHLSKNMLHGQLKRGT 407
           +  S+  LD+S N    S+   F                                    T
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFT 268

Query: 408 FFN--CSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 464
           F     S + T DLS +++  ++   V    + L  L L  N +          L  L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 465 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524
           L+LS N L       F+N                                          
Sbjct: 328 LNLSQNFLGSIDSRMFEN------------------------------------------ 345

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFS 582
                      L  L  LDLS N  I  +  Q    L  ++ L L  N L  S+P   F 
Sbjct: 346 -----------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

Query: 583 NLKHVESLDLSNN 595
            L  ++ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (321), Expect = 1e-31
 Identities = 84/397 (21%), Positives = 139/397 (35%), Gaps = 66/397 (16%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLT 292
            +P+       +  +DLS N +  E+ E       +LQFL +        + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNN 350
           +L  L+L+ N+F+     + +  ++LE L L   +L G +    +   LT L+ +++ +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 351 HLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLH------ 400
           +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 401 -GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 459
            G  K G  F  +S+ TLDLS N    S+          + +     +    +       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 460 NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI 519
           N     + +   L           T   S S            F++             +
Sbjct: 260 NFKDPDNFTFKGLEAS-----GVKTCDLSKSK----------IFALLKS----------V 294

Query: 520 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP 578
           F                + L  L L+ N+ I  I       LT +  LNLS N L     
Sbjct: 295 FSH-------------FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 579 STFSNLKHVESLDLSNNKLNGKIPHQ----LVELKTL 611
             F NL  +E LDLS N +   +  Q    L  LK L
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (279), Expect = 4e-26
 Identities = 77/460 (16%), Positives = 149/460 (32%), Gaps = 71/460 (15%)

Query: 2   SSCEVNGVV---RSQGLCSL----VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ 54
           S C V G      ++GL  +     H+  + ++ N +        + +  L+ L V    
Sbjct: 6   SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT 65

Query: 55  LTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LF-NYSRLKIFNAENNEIKAEITES 112
               I ++    L+S+  L L  N F     LE   F   + L++       +   +   
Sbjct: 66  PGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSG 122

Query: 113 HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKL 172
           +        L  L L  N                    ++  I+    F N       + 
Sbjct: 123 NFFKPLT-SLEMLVLRDN--------------------NIKKIQPASFFLNM-----RRF 156

Query: 173 ETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD 232
             L L  + +     +        +    +               L S+ + + +   L 
Sbjct: 157 HVLDLTFNKVK---SICEEDLLNFQGKHFTLLR------------LSSITLQDMNEYWLG 201

Query: 233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT 292
                +      +  LDLS N     + +         +  +L  +N      S      
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-- 259

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL-GNLTRLQYIIMPNNH 351
              +   +   F G       + S ++   L+ +  +  + + +  + T L+ + +  N 
Sbjct: 260 --NFKDPDNFTFKG------LEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE 310

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSC-FHPL-SIKQVHLSKNMLHGQLKRGTFF 409
           +       F  L  L  L++S N +  S+ S  F  L  ++ + LS N +   L   +F 
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 410 NCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL 448
              +L  L L  N+L  S+PD + D L+ L  + L  N  
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (330), Expect = 1e-32
 Identities = 93/451 (20%), Positives = 167/451 (37%), Gaps = 79/451 (17%)

Query: 192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN---------- 241
           S+  L++    ++N+   +PV+  + + S   + N+ +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 242 ---MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
               +    L+L+N  L+  +PE       +L+ L  S N+L   L     +L +L    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 299 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
                     P        LE L ++NN L  K+P  L N + L+ I + NN L+  +P 
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 359 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 418
                 SL+ +   +N +   LP   +   +  ++   N L     +       SL ++ 
Sbjct: 171 L---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIV 221

Query: 419 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 478
              N L       +  L  L+ +   +N L+            L+ L++ +N L   +P 
Sbjct: 222 AGNNIL--EELPELQNLPFLTTIYADNNLLK----TLPDLPPSLEALNVRDNYLTD-LPE 274

Query: 479 CFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
              + T L  S +  S           +  +  +L   ++EI                  
Sbjct: 275 LPQSLTFLDVSENIFSG-------LSELPPNLYYLNASSNEIRSLCDL----------PP 317

Query: 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
            L  L++S NKLI  +P     L   + L  S N+L   +P    NLK    L +  N L
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNPL 369

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
             + P     ++ L +     N+   E+PE 
Sbjct: 370 R-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (311), Expect = 3e-30
 Identities = 96/448 (21%), Positives = 152/448 (33%), Gaps = 82/448 (18%)

Query: 169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 228
           + +   L L N  L+    LP      L  L  S N++   +P      L SL V NN++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 229 NALDGSIPS---------------SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 273
            AL    P                   N  FL+I+D+ NN L  ++P+       +L+F+
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 274 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP 333
           A  NN L+        NL  L  +  + N    ++P       SLE +   NN L  +  
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EEL 230

Query: 334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQV 392
             L NL  L  I   NN L+  +P       SL+ L++ DN ++  LP     L  +   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
               + L             +L  L+ S N +  S+ D       L  L + +N L    
Sbjct: 286 ENIFSGLSELPP--------NLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI--- 330

Query: 453 SVQL-CELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQG 510
             +L     +L+ L  S N+L   +P    N   LH  Y+           F  I     
Sbjct: 331 --ELPALPPRLERLIASFNHLAE-VPELPQNLKQLHVEYN-------PLREFPDIPESVE 380

Query: 511 FLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 570
            L   +H                     L  L +  N L    P    ++     L ++ 
Sbjct: 381 DLRMNSHLAEVPEL-----------PQNLKQLHVETNPLR-EFPDIPESVED---LRMNS 425

Query: 571 NNLTGSIPSTFSNLKHVESLDLSNNKLN 598
             +             +E     ++  +
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 2e-28
 Identities = 93/457 (20%), Positives = 162/457 (35%), Gaps = 92/457 (20%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
              HL+ L  + N L   LP    ++ SL + + +   L+             +E L +S
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVS 139

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
           NN  +    L  L N S LKI + +NN +K                              
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNNSLKK----------------------------- 167

Query: 137 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL 196
            P        LE++   + ++  E P   L+N   L  ++  N+SL     LP+     L
Sbjct: 168 LPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----L 217

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
             +   NN +      ++ + LP L       N L  ++P    +   L+ L++ +N+LT
Sbjct: 218 ESIVAGNNIL--EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT 270

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS 316
            ++PE       +L FL +S N     L        NL +L    N     +        
Sbjct: 271 -DLPELPQ----SLTFLDVSENIFS-GLSEL---PPNLYYLNASSNEIR-SLCDLPP--- 317

Query: 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 376
           SLE L ++NN L+ ++P     L RL   I   NHL   +P       +L+ L +  N +
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPEL---PQNLKQLHVEYNPL 369

Query: 377 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 436
               P     +   +++     +             +L  L +  N L    PD      
Sbjct: 370 R-EFPDIPESVEDLRMNSHLAEV--------PELPQNLKQLHVETNPLR-EFPDI---PE 416

Query: 437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
            +  L +    +           ++L+     +++ H
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 65/392 (16%), Positives = 124/392 (31%), Gaps = 98/392 (25%)

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
           P +  N  FLQ     +++LT E+P        +      + +  + +    N     + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355
             +L                     L LNN  L   +P    +L  L   +   N L   
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-E 105

Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
           +P     L SL + + +   +S   P                                L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------------------------------LE 134

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 475
            L +S N+L   +P+ +   S L  + + +N+L+ ++         L+ +   NN L   
Sbjct: 135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEE- 187

Query: 476 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 535
           +P   +   L                          +   N+ + +             +
Sbjct: 188 LPELQNLPFLTA------------------------IYADNNSLKKLP----------DL 213

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
              L  +    N L     P++ NL  + T+   +N L  ++P    +L+   +L++ +N
Sbjct: 214 PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDN 267

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
            L   +P     L  L+V    ++ LS   P 
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 78/364 (21%), Positives = 137/364 (37%), Gaps = 60/364 (16%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L +   L+ + + +N L+  LP       SL  +   +NQL        L +L  +  + 
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIY 201

Query: 75  LSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
             NN  + +P           L+   A NN ++ E+ E  +L      L T+   +N   
Sbjct: 202 ADNNSLKKLPDLP------LSLESIVAGNNILE-ELPELQNLP----FLTTIYADNNLLK 250

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
               P        LE +++    +  + P         L  L +  +  +G   LP    
Sbjct: 251 --TLPDLPPS---LEALNVRDNYLT-DLPELP----QSLTFLDVSENIFSGLSELP---- 296

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
             L  L+ S+N IR      + D+ PSL   N S N L   +P+       L+ L  S N
Sbjct: 297 PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFN 347

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
           HL  E+PE       NL+ L +  N L+        ++ +L+      N  + E+P+   
Sbjct: 348 HLA-EVPELPQ----NLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPEL-- 394

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
              +L+ L++  N L  + P    ++  L+   M +  +  P        D L+      
Sbjct: 395 -PQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 374 NNIS 377
           ++  
Sbjct: 450 HHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
            I P+  + T +Q      +NLT  +P    N+K       + ++     P    E + +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 612 EV 613
            V
Sbjct: 61  AV 62

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (311), Expect = 4e-31
 Identities = 60/295 (20%), Positives = 111/295 (37%), Gaps = 28/295 (9%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           LR +  S+  ++  +P +I      L + NN ++ L       F  ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKI 90

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
           + +I E        LQ L +S N+L     +L S      +L  L++  NR         
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 313 SKCSSLEGLYLNNNSL-LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371
           S   ++  + +  N L          +  +L Y+ +    L G IP +    ++L  L +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHL 200

Query: 372 SDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
             N I             + ++ L  N +   ++ G+     +L  L L  N+L+  +P 
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 431 WVDGLSQLSHLILGHNNLEG------EVSVQLCELNQLQLLDLSNNNL-HGPIPP 478
            +  L  L  + L  NN+               +      + L NN + +  + P
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (284), Expect = 1e-27
 Identities = 69/367 (18%), Positives = 128/367 (34%), Gaps = 83/367 (22%)

Query: 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 302
            L+++  S+  L   +P+ ++    +   L L NN++   L   +F  L +L  L L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 303 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FC 361
           +      ++ S    L+ LY++ N L  +IP      + L  + + +N +   +P   F 
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHL-VEIPP--NLPSSLVELRIHDNRIRK-VPKGVFS 144

Query: 362 QLDSLQILDISDNNISGSL--PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
            L ++  +++  N +  S   P  F  L +  + +S+  L   + +       +L  L L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP---ETLNELHL 200

Query: 420 SYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 478
            +N++  +I        S+L  L LGHN +    +  L  L  L+ L L NN L   +P 
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA 258

Query: 479 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
              +                                                     L L
Sbjct: 259 GLPD-----------------------------------------------------LKL 265

Query: 539 LSGLDLSCNKLIGHIPPQI-------GNLTRIQTLNLSHNNLTGSI--PSTFSNLKHVES 589
           L  + L  N  I  +                   ++L +N +      P+TF  +    +
Sbjct: 266 LQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 590 LDLSNNK 596
           +   N K
Sbjct: 325 IQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (270), Expect = 9e-26
 Identities = 52/267 (19%), Positives = 107/267 (40%), Gaps = 28/267 (10%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
           + L  L + NN I   I  K    L     LY+  N +  +  ++PSS      L  L +
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------LVELRI 130

Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-FNLTNLQWLQLEGNRFVGEIP 309
            +N +  ++P+ +  G  N+  + +  N L+   F    F+   L +L++   +    IP
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368
           + L    +L  L+L++N +   I    L   ++L  + + +N +          L +L+ 
Sbjct: 189 KDLP--ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 369 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF------FNCSSLVTLDLSY 421
           L + +N +S  +P+    L  ++ V+L  N +  ++    F         +    + L  
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 422 NRLNGSI--PDWVDGLSQLSHLILGHN 446
           N +      P     ++    +  G+ 
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 7e-24
 Identities = 48/239 (20%), Positives = 95/239 (39%), Gaps = 18/239 (7%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
           ++L++L +S N++   IP  +   L  L + +N +  +       F  ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SL 312
            L     E  A   + L +L +S   L   +         L  L L+ N+    I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 313 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 372
            + S L  L L +N +       L  L  L+ + + NN L   +P     L  LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 373 DNNISGSLPSCFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 423
            NNI+    + F P+           + L  N + + +++  TF   +  + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 44/267 (16%)

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
              +LD+ +N+IS      F  L  +  + L  N +  ++    F     L  L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL-HGPIPP-CFD 481
           L   IP   +  S L  L +  N +          L  +  +++  N L +    P  FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541
              L+    + +                                 +  I    +   L+ 
Sbjct: 171 GLKLNYLRISEA--------------------------------KLTGI-PKDLPETLNE 197

Query: 542 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 600
           L L  NK I  I  +     +++  L L HN +      + S L  +  L L NNKL+ +
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 601 IPHQLVELKTLEVFSVAYNNLSGEIPE 627
           +P  L +LK L+V  +  NN++ ++  
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 56/342 (16%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
           HL+ +  +   L+ ++P  ++      +LD+ +N ++  +       L  +  L+L NN 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFP 138
               I  +      +L+      N +         +       L  L +  N        
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLV-------EIPPNLPSSLVELRIHDN-------- 133

Query: 139 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA-GPFRLPIHSHKRLR 197
                           I+   + P  +      +  + +  + L    F        +L 
Sbjct: 134 ---------------RIR---KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 257
            L +S   +   IP  + + L  L++ +N + A++            L  L L +N +  
Sbjct: 176 YLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIE---LEDLLRYSKLYRLGLGHNQIR- 230

Query: 258 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS------ 311
            I          L+ L L NN L   + +   +L  LQ + L  N    ++  +      
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVG 288

Query: 312 -LSKCSSLEGLYLNNNSL-LGKI-PRWLGNLTRLQYIIMPNN 350
              K +   G+ L NN +   ++ P     +T    I   N 
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 55/302 (18%), Positives = 103/302 (34%), Gaps = 47/302 (15%)

Query: 10  VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 69
           +R      L HL  L + +N +        + +  L+ L +S N L       P    +S
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV----EIPPNLPSS 124

Query: 70  IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129
           + EL + +N  +  +          +       N ++    E  +    K  LN L +S 
Sbjct: 125 LVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK--LNYLRISE 181

Query: 130 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 189
                                 L+ I      P  L E    L  L L ++ +       
Sbjct: 182 A--------------------KLTGI------PKDLPET---LNELHLDHNKIQAIELED 212

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 249
           +  + +L +L + +N IR  I       LP+L   +   N L   +P+   ++K LQ++ 
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 250 LSNNHLTGEIPE------HLAVGCVNLQFLALSNNNLQGHLFSRN--FNLTNLQWLQLEG 301
           L  N++T ++           V       ++L NN +            +T+   +Q   
Sbjct: 271 LHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 302 NR 303
            +
Sbjct: 330 YK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 43/242 (17%), Positives = 68/242 (28%), Gaps = 61/242 (25%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
                LDL  N ++    D   GL  L  L+L +N +          L +LQ L +S N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 472 LHGPIPPCFDN-TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           L    P    +   L    +     P   F                              
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSG---------------------------- 145

Query: 530 IYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--------- 579
                 L  ++ +++  N L      P   +  ++  L +S   LT  IP          
Sbjct: 146 ------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNEL 198

Query: 580 -------------TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
                               +  L L +N++       L  L TL    +  N LS  +P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 627 EW 628
             
Sbjct: 258 AG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
           L  +  S   L   +P +I        L+L +N+++      F  L+H+ +L L NNK++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
                    L+ L+   ++ N+L  EIP 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPP 119

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (319), Expect = 6e-31
 Identities = 74/439 (16%), Positives = 151/439 (34%), Gaps = 32/439 (7%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
               L+ L ++ N L   +        +L+ LD+S N            +++ ++ L LS
Sbjct: 67  FNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
             + +   S+ P+ + +  K+          +  +   L       NT SL   +     
Sbjct: 124 TTHLEK-SSVLPIAHLNISKVLLVLGETYGEKE-DPEGL----QDFNTESLHIVFPTNKE 177

Query: 137 FPKFLYH-QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
           F   L      +  ++LS+IK   E        +   +                  S+  
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL-----------SNLT 226

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS--IPSSFGNMKFLQILDLSNN 253
           L  ++ + N+    + +     +    + N  +           S  ++K L I  + ++
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
                   ++     N+     + +  +         ++    L    N     + ++  
Sbjct: 287 VFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 314 KCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC-QLDSLQILD 370
             + LE L L  N L  L KI      +  LQ + +  N +        C    SL  L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +S N ++ ++  C  P  IK + L  N +   + +       +L  L+++ N+L  S+PD
Sbjct: 406 MSSNILTDTIFRCL-PPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQLK-SVPD 461

Query: 431 -WVDGLSQLSHLILGHNNL 448
              D L+ L  + L  N  
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (315), Expect = 2e-30
 Identities = 96/472 (20%), Positives = 161/472 (34%), Gaps = 30/472 (6%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
               L I+ N +       + +++ LRIL +S N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 139
               IS  P  N   LK  +   N   A +           QL  L LS+ + +      
Sbjct: 81  LVK-ISCHPTVN---LKHLDLSFNAFDA-LPIC-KEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPNWL---------LENNTKLETLFLVNDSLAGPFRLPI 190
             +       + L       E P  L         +   T  E  F+++ S+     L +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
            + K + + +  +  +     ++    L +L + N                   +    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 251 SNNHLTG----EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 306
           SN  L G       ++       L    + ++             +N+       +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 364
                 SK S    L  +NN L   +    G+LT L+ +I+  N L+    I     Q+ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 365 SLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT-LDLSY 421
           SLQ LDIS N++S       C    S+  +++S N     L    F      +  LDL  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLHS 430

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
           N++  SIP  V  L  L  L +  N L+         L  LQ + L  N   
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 2e-27
 Identities = 89/472 (18%), Positives = 158/472 (33%), Gaps = 61/472 (12%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 205
            L  + +SH ++       + + N +LE L L ++ L     +  H    L+ LD+S N 
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA 101

Query: 206 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-LDLSNNHLTGEIPEHLA 264
                  K    +  L     S   L+ S      ++   ++ L L   +   E PE L 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 265 -VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEG--- 320
                +L  +  +N      L      + NL+   ++      +    LS  + L+    
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 321 ---LYLNNNSLLGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVE-----FCQLDSLQIL 369
              L LNN          +  L   T + Y  + N  L+G +           L +L I 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 370 DISDNNISGSLPSCFHPLS---IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
            +  +         +   S   IK   +S       +        S  + LD S N L  
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 427 SIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPC-FDNT 483
           ++ +    L++L  LIL  N L+   +++    ++  LQ LD+S N++           T
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 543
                                           +      ++  +       +   +  LD
Sbjct: 399 K-------------------------------SLLSLNMSSNILTDTIFRCLPPRIKVLD 427

Query: 544 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           L  NK+   IP Q+  L  +Q LN++ N L       F  L  ++ + L  N
Sbjct: 428 LHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 1e-25
 Identities = 71/399 (17%), Positives = 144/399 (36%), Gaps = 28/399 (7%)

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 305
           ++D S N L   +P+ L+        L +S N +   L++ +  +L+ L+ L +  NR  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ---KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLD 364
                       LE L L++N L  KI         L+++ +  N  +  PI  EF  + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
            L+ L +S  ++  S       L+I +V L     +G+ +           T  L     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFP 173

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN----NLHGPIPPCF 480
                 ++  +S  +   L  +N++  +    C      L  L  N    NL        
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 481 DNTTLHESYSNSSSPDEQFEIF---FSIEGHQGFLEKQNHEIFEFTTKNIA----YIYQG 533
            N+ +        +    F I       +      +     +   +   +        Q 
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 534 KV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL 590
            +    S ++  + + +            ++    L+ S+N LT ++     +L  +E+L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 591 DLSNNKLN--GKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
            L  N+L    KI     ++K+L+   ++ N++S +  +
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 3e-23
 Identities = 75/447 (16%), Positives = 159/447 (35%), Gaps = 40/447 (8%)

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
           +D S N +  H+P  +      L +  N ++ L     S   ++  L+IL +S+N +   
Sbjct: 5   VDRSKNGLI-HVPKDLSQKTTILNISQNYISELW---TSDILSLSKLRILIISHNRIQ-Y 59

Query: 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS--LSKCS 316
           +   +      L++L LS+N L            NL+ L L  N F   +P        S
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNMS 115

Query: 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF---CQLDSLQILDISD 373
            L+ L L+   L       + +L   + +++           E       +SL I+  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV----TLDLSYNRLNGSIP 429
                 L      ++  ++   K +L            + L       +L+ N +  +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 430 DWVDGLSQLSHLILGHNNLEG----------EVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
            ++  L  + H  + + ++            +       L  L +  + ++    P    
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 480 FDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
           ++  + ++      S       +  S       L+  N+ + +   +N  +      L+ 
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH------LTE 349

Query: 539 LSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNN 595
           L  L L  N+L  +  I      +  +Q L++S N+++        S  K + SL++S+N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLS 622
            L   I   L     ++V  +  N + 
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK 434

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (317), Expect = 2e-30
 Identities = 67/323 (20%), Positives = 117/323 (36%), Gaps = 56/323 (17%)

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
           ++    +     L+V  + +   +P  +   + +L + +N++     S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT----SLPALPPE---LR 84

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 306
            L++S N LT  +P     G + L   +    +L           + L  L + GN+   
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL--- 363
            +P        L+ L +++N  L  +P     L +L      NN L   +P+    L   
Sbjct: 135 SLPVLP---PGLQELSVSDNQ-LASLPALPSELCKLW---AYNNQLTS-LPMLPSGLQEL 186

Query: 364 --------------DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 409
                           L  L   +N ++ SLP+   P  +K++ +S N L          
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRL-----TSLPV 238

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             S L  L +S NRL  S+P      S L  L +  N L   +   L  L+    ++L  
Sbjct: 239 LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 470 NNLHGPIPPCFDNTTLHESYSNS 492
           N L           T    YS  
Sbjct: 294 NPLSERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (306), Expect = 4e-29
 Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 54/359 (15%)

Query: 147 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 206
              +++    +    P+ L  +   + TL + +++L     LP      LR L+VS N +
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 207 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 266
              +PV     L  L +F+N +  L             L  L +  N LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 326
              LQ L++S+N L     S     + L  L    N+    +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 327 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 386
            L   +P     L +L      NN L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QL-ASLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV--LP 240

Query: 387 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
             +K++ +S N L   L        S L++L +  N+L   +P+ +  LS  + + L  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 447 NLEGEVSVQLCELNQLQLLDLSNNNL----HGPIPPCFDNTTLHESYSNSSSPDEQFEI 501
            L       L  L ++      +  +            +   LH + ++   P  + E 
Sbjct: 295 PLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (300), Expect = 3e-28
 Identities = 76/374 (20%), Positives = 122/374 (32%), Gaps = 104/374 (27%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
             +L++  + LT  +P+ L     ++  L + +NNL     S       L+ L++ GN+ 
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
              +P        L         L    P     L +L    +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVL---PP 141

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
            LQ L +SDN ++ SLP+                             S L  L    N+L
Sbjct: 142 GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDN- 482
             S+P      S L  L +  N L       L    ++L  L   NN L   +P      
Sbjct: 174 T-SLPM---LPSGLQELSVSDNQLA-----SLPTLPSELYKLWAYNNRLT-SLPALPSGL 223

Query: 483 TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541
             L  S +  +S P                                         S L  
Sbjct: 224 KELIVSGNRLTSLPVL--------------------------------------PSELKE 245

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
           L +S N+L   +P     L     L++  N LT  +P +  +L    +++L  N L+ + 
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 602 PHQLVELKTLEVFS 615
              L E+ +   +S
Sbjct: 301 LQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  112 bits (282), Expect = 5e-26
 Identities = 75/370 (20%), Positives = 126/370 (34%), Gaps = 58/370 (15%)

Query: 16  CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
           C       L +  + L  +LP C+     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 76  SNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           S N    +P+    L     L IF+     + A  +           L  L +  N    
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPS----------GLCKLWIFGNQLTS 135

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
              P        L+ + +S  ++    P       ++L  L+  N+ L     LP     
Sbjct: 136 L--PVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
            L++L VS+N +   +P    + L  L+ +NN + +L             L+ L +S N 
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           LT  +P   +     L+ L +S N L     S     + L  L +  N+    +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN---HLEGPIPVEFCQLDSLQILDI 371
            SS   + L  N L  +  + L  +T       P           P E   L       +
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 372 SDNNISGSLP 381
                    P
Sbjct: 343 VPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 58/270 (21%), Positives = 89/270 (32%), Gaps = 71/270 (26%)

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLD 418
           C  +   +L++ ++ ++ +LP C  P  I  + +  N L       T        L TL+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNL-------TSLPALPPELRTLE 87

Query: 419 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 478
           +S N+L  S+P    GL +LS       +L           + L  L +  N L   +P 
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS-LPV 138

Query: 479 CFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
                  L  S +  +S                                          S
Sbjct: 139 LPPGLQELSVSDNQLASLPAL-------------------------------------PS 161

Query: 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
            L  L    N+L   +P     L   Q L++S N L  S+P+  S L     L   NN+L
Sbjct: 162 ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSEL---YKLWAYNNRL 213

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
              +P     LK L V      N    +P 
Sbjct: 214 T-SLPALPSGLKELIV----SGNRLTSLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 55/182 (30%)

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDN--TTLHESYSNSSS-PDEQFEIFFSIEGHQ 509
            ++ C  N   +L++  + L   +P C     TTL    +N +S P              
Sbjct: 33  KMRACLNNGNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTSLPAL------------ 79

Query: 510 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 569
                                        L  L++S N+L   +P     L  +   +  
Sbjct: 80  --------------------------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNP 112

Query: 570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWK 629
             +L             +  L +  N+L   +P     L+ L   SV+ N L+  +P   
Sbjct: 113 LTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALP 160

Query: 630 AQ 631
           ++
Sbjct: 161 SE 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (314), Expect = 4e-30
 Identities = 93/516 (18%), Positives = 178/516 (34%), Gaps = 83/516 (16%)

Query: 108 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 167
           E     S +        + +     D +   + +   +  + V   +  M  + P  LL+
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAALLD 72

Query: 168 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 227
           +  ++E L L +  +             +++L +  N IR ++P  +   +P L V    
Sbjct: 73  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE 131

Query: 228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR 287
            N L       F N   L  L +SNN+L   I +       +LQ L LS+N L     S 
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS- 189

Query: 288 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL------------------- 328
              + +L    +  N        +L+   ++E L  ++NS+                   
Sbjct: 190 --LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 329 -LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL 387
            L     WL N   L  + +  N LE  +   F ++  L+ L IS+N +  +L     P+
Sbjct: 243 NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
                                    +L  LDLS+N L   +        +L +L L HN+
Sbjct: 301 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 448 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG 507
           +    +++L   + L+ L LS+N+       C     L  + +  +  D         + 
Sbjct: 336 IV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVARPAVDDADQHCKIDYQL 387

Query: 508 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 567
             G   K++ + +             ++L  ++   +        +    G  +   T+N
Sbjct: 388 EHGLCCKESDKPYL-----------DRLLQYIALTSVVEK-----VQRAQGRCSATDTIN 431

Query: 568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 603
              +            L+  E L+   N+L  ++  
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 9e-29
 Identities = 96/598 (16%), Positives = 194/598 (32%), Gaps = 58/598 (9%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           L       +++I          +    + + +I+   ++ +   + ++ L     +E L 
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           L++   +  I          ++      N I+                            
Sbjct: 82  LNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY--------------------------- 113

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
            + P    +   L  + L    ++   P  +  N  KL TL + N++L         +  
Sbjct: 114 -LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
            L+ L +S+N +  H+ +    ++PSL+  N S N L     S+      ++ LD S+N 
Sbjct: 172 SLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 222

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           +   +   +    V L  L L +NNL     +   N   L  + L  N     +     K
Sbjct: 223 IN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
              LE LY++NN  L  +  +   +  L+ + + +NHL   +     Q D L+ L +  N
Sbjct: 277 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 334

Query: 375 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 434
           +I     S  H L  K + LS N       R  F N +     D   +       +    
Sbjct: 335 SIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 494
             +     L        ++  + ++ + Q    + + ++         T         + 
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 554
             E        E ++   E Q     +   + +      ++ + L    L  + L     
Sbjct: 453 QLEA-------EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

Query: 555 PQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
                 T ++         T        +  K  E L+  N  L  ++ ++  +   L
Sbjct: 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 9e-28
 Identities = 67/351 (19%), Positives = 126/351 (35%), Gaps = 53/351 (15%)

Query: 273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI 332
               ++NLQ      + ++         G   +          ++ + +   N+++    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT--------LNNQKIVTFKNSTMRKLP 67

Query: 333 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQ 391
              L +  +++ + + +  +E      F    ++Q L +  N I    P  F  +  +  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 392 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451
           + L +N L   L RG F N   L TL +S N L     D     + L +L L  N L   
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 184

Query: 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF 511
             V L  +  L   ++S N L   +        L  S+++                    
Sbjct: 185 -HVDLSLIPSLFHANVSYNLLST-LAIPIAVEELDASHNS-------------------- 222

Query: 512 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 571
                          I  + +G V   L+ L L  N L       + N   +  ++LS+N
Sbjct: 223 ---------------INVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264

Query: 572 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
            L   +   F  ++ +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 52/243 (21%)

Query: 394 LSKNMLHGQLKRGTFFNC------SSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGH 445
           +     +    R   + C         V  D+  +     +    +   L+    +   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 446 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSN-SSSPDEQFE 500
           + +    +  L    Q++LL+L++  +       F        L+  ++     P   F 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF- 119

Query: 501 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GN 559
                                            + + LL+ L L  N  +  +P  I  N
Sbjct: 120 ---------------------------------QNVPLLTVLVLERND-LSSLPRGIFHN 145

Query: 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619
             ++ TL++S+NNL      TF     +++L LS+N+L   +   L  + +L   +V+YN
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 202

Query: 620 NLS 622
            LS
Sbjct: 203 LLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
            L +   L E+ ++ N+L   +      M  L  L +S+N+L  +++      + +++ L
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVL 306

Query: 74  MLSNNYFQIPISLEP-LFNYSRLKIFNAENNEIK 106
            LS+N+      +E     + RL+    ++N I 
Sbjct: 307 DLSHNHLL---HVERNQPQFDRLENLYLDHNSIV 337

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  119 bits (300), Expect = 7e-29
 Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
           +  ++  +   +   +P  I      L +  N++  +      +F ++  L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNS 110

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311
           +  +I      G  +L  L L +N L       F     L+ L+ L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 312 LSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 370
            ++  SL  L L     L  I       L  L+Y+ +   +++  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +S N+                          +++ G+F   SSL  L +  ++++  I  
Sbjct: 225 MSGNHFP------------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 431 WV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
              DGL+ L  L L HNNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 7e-26
 Identities = 61/307 (19%), Positives = 104/307 (33%), Gaps = 65/307 (21%)

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
               +         E+PQ +   S+   L L  N++         +L  L+ + +  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 353 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNC 411
                  F  L SL  L++ DN ++      F  L  ++++ L  N +   +    F   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 412 SSLVTLDLS-YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSN 469
            SL+ LDL    +L        +GL  L +L LG  N+     +  L  L  L+ L++S 
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSG 227

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N+     P  F                                                 
Sbjct: 228 NHFPEIRPGSFHG----------------------------------------------- 240

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
                 LS L  L +  ++ +  I       L  +  LNL+HNNL+      F+ L+++ 
Sbjct: 241 ------LSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 589 SLDLSNN 595
            L L +N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 4e-23
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 46/265 (17%)

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 482
           L        + LS+L  L L +N +E   S     +  L  LDL        I    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 483 ----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
                 L+    N                                   I  +     L  
Sbjct: 195 LFNLKYLNLGMCN-----------------------------------IKDMPNLTPLVG 219

Query: 539 LSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
           L  L++S N     I P     L+ ++ L + ++ ++    + F  L  +  L+L++N L
Sbjct: 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 598 NGKIPHQLVE-LKTLEVFSVAYNNL 621
           +  +PH L   L+ L    + +N  
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 24/239 (10%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLD 200
           +  Y++L    +          +   LE L L  +S+     G F  L       L  L+
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-----SLNTLE 129

Query: 201 VSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLT 256
           + +N +   IP    + L     L++ NN + ++      +F  +  L  LDL     L 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP---SYAFNRVPSLMRLDLGELKKLE 185

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
             I E    G  NL++L L   N++     +    L  L+ L++ GN F    P S    
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
           SSL+ L++ N+ +          L  L  + + +N+L       F  L  L  L +  N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 59/298 (19%), Positives = 100/298 (33%), Gaps = 82/298 (27%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI----PISLEPLFNYSRLKIF 98
           ++ R L++  N +   I +    HL  +E L L  N   I      +   L +       
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLAS------- 124

Query: 99  NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 158
                                  LNTL L  N                     L+ I   
Sbjct: 125 -----------------------LNTLELFDN--------------------WLTVI--- 138

Query: 159 GEFPNWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVK 213
              P+   E  +KL  L+L N+ +    +  F  +P      L +LD+       +I   
Sbjct: 139 ---PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEG 190

Query: 214 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 273
             + L +L   N  M  +   +P +   +  L+ L++S NH   EI      G  +L+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL 247

Query: 274 ALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
            + N+ +   + + F     L +L  L L  N          +    L  L+L++N  
Sbjct: 248 WVMNSQVSLIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 76/281 (27%)

Query: 10  VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 69
           +++     L HL+ L +  N +R         + SL  L++  N LT  I S    +L+ 
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 70  IEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITES--HSLIAPKFQLNTL 125
           + EL L NN  +     +   + +  RL +   E  +++  I+E     L      L  L
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDL--GELKKLE-YISEGAFEGLF----NLKYL 201

Query: 126 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL--- 182
           +L                       ++  +          L     LE L +  +     
Sbjct: 202 NLGMC--------------------NIKDMPN--------LTPLVGLEELEMSGNHFPEI 233

Query: 183 -AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 240
             G F  L       L++L V N+ +   I                          ++F 
Sbjct: 234 RPGSFHGLS-----SLKKLWVMNSQVS-LIE------------------------RNAFD 263

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
            +  L  L+L++N+L+  +P  L      L  L L +N   
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 62/219 (28%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
           +    +  +   L+  +P  +   S   +L L  NN++   +     L+ L++L L   N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RN 109

Query: 472 LHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530
               I    F+                                                 
Sbjct: 110 SIRQIEVGAFNG------------------------------------------------ 121

Query: 531 YQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 589
                L+ L+ L+L  N  +  IP      L++++ L L +N +       F+ +  +  
Sbjct: 122 -----LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 590 LDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 627
           LDL   K    I       L  L+  ++   N+  ++P 
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  118 bits (298), Expect = 1e-28
 Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 37/267 (13%)

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
            +P       R L++  N I+  I                          +SF +++ L+
Sbjct: 57  EVPDGISTNTRLLNLHENQIQ-IIK------------------------VNSFKHLRHLE 91

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNR 303
           IL LS NH+   I      G  NL  L L +N L       F     L+ L+ L L  N 
Sbjct: 92  ILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNP 147

Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQ 362
                  + ++  SL  L L     L  I       L+ L+Y+ +   +L   IP     
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTP 205

Query: 363 LDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
           L  L  LD+S N++S   P  F  L  ++++ + ++ +   ++R  F N  SLV ++L++
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNL 448
           N L     D    L  L  + L HN  
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  118 bits (297), Expect = 1e-28
 Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
           +  ++     N+R  +P  I      L +  N +  +     +SF +++ L+IL LS NH
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNH 99

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311
           +   I      G  NL  L L +N L       F     L+ L+ L L  N        +
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYA 155

Query: 312 LSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 370
            ++  SL  L L     L  I       L+ L+Y+ +   +L   IP     L  L  LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +S N++S                         ++ G+F     L  L +  +++   I  
Sbjct: 214 LSGNHLS------------------------AIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

Query: 431 WV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
              D L  L  + L HNNL          L+ L+ + L +N  +
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (271), Expect = 3e-25
 Identities = 69/294 (23%), Positives = 107/294 (36%), Gaps = 66/294 (22%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
           E+P  +S  ++   L L+ N +         +L  L+ + +  NH+       F  L +L
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS-YNRL 424
             L++ DN ++      F  L  +K++ L  N +   +    F    SL  LDL    RL
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 425 NGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN 482
           +  I +   +GLS L +L L   NL     +  L  L +L  LDLS N+L    P  F  
Sbjct: 174 S-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
                                                                L  L  L
Sbjct: 230 -----------------------------------------------------LMHLQKL 236

Query: 543 DLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
            +  ++ I  I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 237 WMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 5e-23
 Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 46/265 (17%)

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  NR
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 482
           L          LS+L  L L +N +E   S     +  L+ LDL        I    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 483 ----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
                 L+ +  N                                   +  I     L  
Sbjct: 184 LSNLRYLNLAMCN-----------------------------------LREIPNLTPLIK 208

Query: 539 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
           L  LDLS N  +  I P     L  +Q L +  + +     + F NL+ +  ++L++N L
Sbjct: 209 LDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 598 NGKIPHQLVE-LKTLEVFSVAYNNL 621
              +PH L   L  LE   + +N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 21/218 (9%)

Query: 166 LENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS- 220
            ++   LE L L  + +     G F         L  L++ +N +   IP      L   
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDNRLT-TIPNGAFVYLSKL 138

Query: 221 --LYVFNNSMNALDGSIPSSFGNMKFLQILDLS-NNHLTGEIPEHLAVGCVNLQFLALSN 277
             L++ NN + ++      +F  +  L+ LDL     L+  I E    G  NL++L L+ 
Sbjct: 139 KELWLRNNPIESIP---SYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAM 194

Query: 278 NNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 336
            NL+     +    L  L  L L GN      P S      L+ L++  + +        
Sbjct: 195 CNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 337 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
            NL  L  I + +N+L       F  L  L+ + +  N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 74/294 (25%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
           T+ R+L++  NQ+   I  +   HL  +E L LS N   I  ++E          FN   
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN--HIR-TIEI-------GAFNGLA 112

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
           N                  LNTL L  N                     L+ I      P
Sbjct: 113 N------------------LNTLELFDN--------------------RLTTI------P 128

Query: 163 NWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 217
           N      +KL+ L+L N+ +    +  F  +P      LR+LD+       +I     + 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-----SLRRLDLGELKRLSYISEGAFEG 183

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
           L +L   N +M  L   IP +   +  L  LDLS NHL+  I      G ++LQ L +  
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 278 NNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
           + +   + + F    NL +L  + L  N          +    LE ++L++N  
Sbjct: 241 SQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 74/273 (27%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
            L HL+ L ++ N +R         + +L  L++  N+LT +I +   V+L+ ++EL L 
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 77  NNYFQ-IPISL-EPLFNYSRLKIFNAENNEIKAEITES--HSLIAPKFQLNTLSLSSNYG 132
           NN  + IP      + +  RL +   E   +   I+E     L      L  L+L+    
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDL--GELKRLS-YISEGAFEGLS----NLRYLNLAMC-- 195

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFRL 188
                             +L  I          L    KL+ L L  + L     G F+ 
Sbjct: 196 ------------------NLREIPN--------LTPLIKLDELDLSGNHLSAIRPGSFQ- 228

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
                  L++L +  + I+  I                          ++F N++ L  +
Sbjct: 229 ---GLMHLQKLWMIQSQIQ-VIE------------------------RNAFDNLQSLVEI 260

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
           +L++N+LT  +P  L     +L+ + L +N   
Sbjct: 261 NLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 49/219 (22%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
           +    +      L   +PD +   +    L L  N ++         L  L++L LS N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 472 LHGPIPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 527
           +       F+      TL                              N          +
Sbjct: 100 IRTIEIGAFNGLANLNTLELFD--------------------------N---------RL 124

Query: 528 AYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSN 583
             I  G    LS L  L L  N  I  IP      +  ++ L+L        I    F  
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 584 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           L ++  L+L+   L  +IP+ L  L  L+   ++ N+LS
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 526 NIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TF 581
            I  I     K L  L  L LS N  I  I       L  + TL L  N LT +IP+  F
Sbjct: 75  QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAF 132

Query: 582 SNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 627
             L  ++ L L NN +   IP    +++  L+ L++       LS  I E
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE--LKRLS-YISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 13  QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 72
             L  L+ L EL ++ N L    P     +  L+ L +  +Q+   I  +   +L S+ E
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259

Query: 73  LMLSNNYFQI--PISLEPLFNYSRLKIFN 99
           + L++N   +       PL +  R+ + +
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  114 bits (286), Expect = 1e-27
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 18/285 (6%)

Query: 200 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 259
             S+ ++   IP  + + + SL + NN +  +     S       LQ L L++N +   I
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGIN-TI 91

Query: 260 PEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSL-SKCSS 317
            E       +L+ L LS N L  +L S  F  L++L +L L GN +      SL S  + 
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 318 LEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 376
           L+ L + N     KI  +    LT L+ + +  + L+   P     + ++  L +     
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 377 SGSLPSCFHPL-SIKQVHLSKNMLHG----QLKRGTFFNCSSLVTL---DLSYNRLNGSI 428
              L        S++ + L    L      +L  G   +     T     ++   L   +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
              ++ +S L  L    N L+         L  LQ + L  N   
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  105 bits (265), Expect = 6e-25
 Identities = 63/357 (17%), Positives = 113/357 (31%), Gaps = 82/357 (22%)

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 305
           I   S+  L   IP  L      ++ L LSNN +  ++ + +     NLQ L L  N   
Sbjct: 35  ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN 89

Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 365
                S S   SLE L L+ N            L+ L                 F  L S
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYN-----------YLSNLS-------------SSWFKPLSS 125

Query: 366 LQILDISDNNISGSLP--SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           L  L++  N    +L   S F  L  ++ + +       +++R  F   + L  L++  +
Sbjct: 126 LTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 423 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
            L    P  +  +  +SHLIL        + + +   + ++ L+L + +L          
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF------- 237

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
                    S     +                                           +
Sbjct: 238 -------HFSELSTGETNSLIK-------------------------------KFTFRNV 259

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLN 598
            ++   L   +   +  ++ +  L  S N L  S+P   F  L  ++ + L  N  +
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 46/246 (18%), Positives = 98/246 (39%), Gaps = 15/246 (6%)

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILD 249
                L+ L +++N I   I       L SL   + S N L  ++ SS F  +  L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEI 308
           L  N         L      LQ L + N +    +  ++F  LT L+ L+++ +      
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE--------F 360
           P+SL    ++  L L+    +  +  ++   + ++ + + +  L+     E         
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
            +  + + + I+D ++   +    + +  + ++  S+N L   +  G F   +SL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 420 SYNRLN 425
             N  +
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 54/326 (16%), Positives = 105/326 (32%), Gaps = 70/326 (21%)

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSL 366
           IP  L+   +++ L L+NN +       L     LQ +++ +N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 426 GSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
             I      GL+ L  L +  ++L+      L  +  +  L L        +    D   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-- 220

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                                                               S +  L+L
Sbjct: 221 ---------------------------------------------------TSSVECLEL 229

Query: 545 SCNKLIGHIPPQI--------GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
               L      ++              + + ++  +L   +    + +  +  L+ S N+
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 597 LNGKIPHQLVE-LKTLEVFSVAYNNL 621
           L   +P  + + L +L+   +  N  
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 36/251 (14%)

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 411
            E          D   I   S  +++ S+PS     ++K + LS N +   +       C
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 412 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470
            +L  L L+ N +N +I +     L  L HL L +N L    S     L+ L  L+L  N
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 471 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530
                +               +S      ++     G+     K   + F          
Sbjct: 135 PYKT-LGE-------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-------- 172

Query: 531 YQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVE 588
                L+ L  L++  +  +    P+   ++  +  L L        +          VE
Sbjct: 173 -----LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 589 SLDLSNNKLNG 599
            L+L +  L+ 
Sbjct: 226 CLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 55/311 (17%), Positives = 101/311 (32%), Gaps = 37/311 (11%)

Query: 2   SSCEVNGVVRSQGLCSL-----VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 56
            +    G   S  L S+       ++ L +++N +       +    +L+ L ++SN + 
Sbjct: 32  RNGICKG--SSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89

Query: 57  GSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI 116
            +I       L S+E L LS NY    +S       S L   N   N  K  + E+ SL 
Sbjct: 90  -TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGET-SLF 145

Query: 117 APKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLF 176
           +   +L  L + +      I  K       LE +++    +   +    L++   +  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI 204

Query: 177 LVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP 236
           L          L          ++                 L    +     + L     
Sbjct: 205 LHMKQHI---LLLEIFVDVTSSVECLE--------------LRDTDLDTFHFSELSTGET 247

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTN 293
           +S       + + +++  L       L      L  L  S N L+     +F     LT+
Sbjct: 248 NSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTS 302

Query: 294 LQWLQLEGNRF 304
           LQ + L  N +
Sbjct: 303 LQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 38/266 (14%), Positives = 84/266 (31%), Gaps = 50/266 (18%)

Query: 17  SLVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
           SL  L+ L ++ N L  +L       ++SL  L++  N       +S   HLT ++ L +
Sbjct: 98  SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 76  SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 135
            N      I  +     + L+    + ++++   +     +     ++ L L        
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYEPKSLKSIQNVSHLILHMKQHI-L 212

Query: 136 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
           +   F+     +E ++L            L   +         ++   G     I     
Sbjct: 213 LLEIFVDVTSSVECLELRD--------TDLDTFH--------FSELSTGETNSLIKKFT- 255

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
            R + +++ ++                            +      +  L  L+ S N L
Sbjct: 256 FRNVKITDESLF--------------------------QVMKLLNQISGLLELEFSRNQL 289

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQ 281
              +P+ +     +LQ + L  N   
Sbjct: 290 KS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 48/221 (21%)

Query: 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470
           C        S   LN SIP        +  L L +N +    +  L     LQ L L++N
Sbjct: 30  CDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 471 NLHGPIPP-CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524
            ++  I    F +      L  SY+  S+     F+                        
Sbjct: 87  GINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK------------------------ 121

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TF 581
                      LS L+ L+L  N     +       +LT++Q L + + +    I    F
Sbjct: 122 ----------PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           + L  +E L++  + L    P  L  ++ +    +      
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  108 bits (272), Expect = 2e-26
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVG 306
                  L   +P  +       Q + L  N +  H+ + +F    NL  L L  N    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR 70

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 364
               + +  + LE L L++N+ L  +       L RL  + +    L+  +    F  L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLA 129

Query: 365 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           +LQ L + DN +  +LP   F  L ++  + L  N +   +    F    SL  L L  N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187

Query: 423 RLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
           R+   +       L +L  L L  NNL    +  L  L  LQ L L++N   
Sbjct: 188 RVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 6e-23
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 6/208 (2%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
            +++ +  N I  H+P        +L +     N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLS 313
              +      G   L  L L    LQ  L    F  L  LQ+L L+ N     +P  +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
              +L  L+L+ N +     R    L  L  +++  N +    P  F  L  L  L +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 374 NNISGSLPSCFHPL-SIKQVHLSKNMLH 400
           NN+S        PL +++ + L+ N   
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
            +P  +   ++ + ++L+ N +             L  + + +N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 367 QILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
           + LD+SDN    S+    FH L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 425 NGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 482
             ++PD     L  L+HL L  N +          L+ L  L L  N +   + P  F +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRD 199

Query: 483 TT 484
             
Sbjct: 200 LG 201

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 48/245 (19%), Positives = 77/245 (31%), Gaps = 47/245 (19%)

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPP- 478
            N L         GL+ L  L L  N     V       L +L  L L    L   + P 
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPG 123

Query: 479 CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 533
            F        L+   +   + PD+ F                                  
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTF---------------------------------- 149

Query: 534 KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
           + L  L+ L L  N+ I  +P +    L  +  L L  N +    P  F +L  + +L L
Sbjct: 150 RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 593 SNNKL 597
             N L
Sbjct: 209 FANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 72/268 (26%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            + + + +  N+++  + ++      ++  L L +N       ++          F    
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA---RIDA-------AAFTGLA 80

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
                              L  L LS N     + P   +    L  + L    +  E  
Sbjct: 81  L------------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 163 NWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 217
             L      L+ L+L +++L       FR L       L  L +  N I   +P      
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLHGNRIS-SVP------ 169

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
                               +F  +  L  L L  N +   +  H       L  L L  
Sbjct: 170 ------------------ERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210

Query: 278 NNL---QGHLFSRNFNLTNLQWLQLEGN 302
           NNL        +    L  LQ+L+L  N
Sbjct: 211 NNLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 42/218 (19%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
           ++   + L  NR++            L+ L L  N L    +     L  L+ LDLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 472 LHGPIPP-CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 525
               + P  F       TLH             F                          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------------------------- 126

Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNL 584
                     L+ L  L L  N  +  +P     +L  +  L L  N ++      F  L
Sbjct: 127 ---------GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 585 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
             ++ L L  N++    PH   +L  L    +  NNLS
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
           L+LL  LDLS N  +  + P     L R+ TL+L    L   +    F  L  ++ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 594 NNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 627
           +N L   +P     +L  L    +  N +S  +PE
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 51/278 (18%), Positives = 79/278 (28%), Gaps = 92/278 (33%)

Query: 10  VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 69
           V +    +  +L  L++ SN L          +  L  LD+S N    S+  +    L  
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 70  IEELMLSNNYFQIPISLEP-LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 128
           +  L L     Q    L P LF    L                          L  L L 
Sbjct: 107 LHTLHLDRCGLQ---ELGPGLF--RGLA------------------------ALQYLYLQ 137

Query: 129 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AG 184
            N                     L  +      P+    +   L  LFL  + +      
Sbjct: 138 DN--------------------ALQAL------PDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 185 PFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 243
            FR L       L +L +  N +  H+                         P +F ++ 
Sbjct: 172 AFRGLH-----SLDRLLLHQNRVA-HVH------------------------PHAFRDLG 201

Query: 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
            L  L L  N+L+  +P         LQ+L L++N   
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 539 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
              + L  N+ I H+P         +  L L  N L     + F+ L  +E LDLS+N  
Sbjct: 34  SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 598 NGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 627
              +     H L  L TL    +    L  E+  
Sbjct: 93  LRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGP 122

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (280), Expect = 7e-26
 Identities = 87/472 (18%), Positives = 168/472 (35%), Gaps = 36/472 (7%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
             + L ++ N +       ++ ++ LR+L +S N++  S+     +    +E L +S+N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 80  FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 139
            Q   ++      + L+  +   N+                +L  L LS+          
Sbjct: 112 LQ---NI-SCCPMASLRHLDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 140 FLYHQHDLEYVDLSHIKM-NGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS--HKRL 196
             +       +DL    +  GE  +  + N T L  +F  N   +    + +++  H +L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-----LDLS 251
             + +++ N +  +   + ++     + N ++  ++ +   S    +F        L++ 
Sbjct: 226 SNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 252 NNHLTGEIPEHLAVGC----VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 307
           N  +T  I             +L    + N        +       +    L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
                   SS   L    N     + +    L RLQ +I+  N L+           ++ 
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMS 403

Query: 368 ILDISDNNISGSLPS------CFHPLSIKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDL 419
            L+  D +++ SL S      C    SI  ++LS NML      G+ F C    +  LDL
Sbjct: 404 SLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-----GSVFRCLPPKVKVLDL 457

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
             NR+  SIP  V  L  L  L +  N L+         L  LQ + L +N 
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (267), Expect = 2e-24
 Identities = 88/468 (18%), Positives = 165/468 (35%), Gaps = 55/468 (11%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 205
           +L  + LSH ++       +   N  LE L + ++ L     +       LR LD+S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 206 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-LDLSNNHLTGEIPEHLA 264
                  K    L  L     S             ++    I LDL + H+ G   E L 
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLS----KCSSLE 319
           +    +  L    N+L     + + N L +LQ   ++ N    +   +      +  +L 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 320 GLYLNNNSLLGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVEF-----CQLDSLQILDI 371
            + L +     K    L        ++Y+ + N  +   I  E        L SL I  +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 372 SDNNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
            +     S  + +   +   +  LS +     +      + SS   L+ + N    S+  
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 431 WVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488
               L +L  LIL  N L+   +V++    ++ L+ LD+S N+L                
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL---------------- 415

Query: 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548
                     ++   +       L   ++ +     + +           +  LDL  N+
Sbjct: 416 ------NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------PKVKVLDLHNNR 461

Query: 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNN 595
           +   IP  + +L  +Q LN++ N L  S+P   F  L  ++ + L +N
Sbjct: 462 I-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (263), Expect = 8e-24
 Identities = 81/438 (18%), Positives = 153/438 (34%), Gaps = 57/438 (13%)

Query: 18  LVHLQELYIASNDLRGSLPWCMA--NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
           +  L+ L ++ ND    LP C    N+T L  L +S+ +         L+ +  +    +
Sbjct: 120 MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR----QLDLLPVAHLHLSCI 174

Query: 76  SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 135
             +     I                             SL  P   +  L    N     
Sbjct: 175 LLDLVSYHIKGGET-----------------------ESLQIPNTTVLHLVFHPNSLFSV 211

Query: 136 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
                +   + L ++ LS+IK+N E    L+               L+   R P   +  
Sbjct: 212 QVNMSV---NALGHLQLSNIKLNDENCQRLM-------------TFLSELTRGPTLLNVT 255

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL--DGSIPSSFGNMKFLQILDLSNN 253
           L+ ++ +               +  L ++N ++           S   +K L I  + N 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
                  E L      +    LS ++          + ++  +L    N F   + Q  S
Sbjct: 316 VFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 314 KCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DSLQILD 370
               L+ L L  N L    K+     N++ L+ + +  N L        C   +S+ +L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +S N ++GS+  C  P  +K + L  N +   + +    +  +L  L+++ N+L  S+PD
Sbjct: 435 LSSNMLTGSVFRCL-PPKVKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPD 490

Query: 431 -WVDGLSQLSHLILGHNN 447
              D L+ L ++ L  N 
Sbjct: 491 GVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 8e-23
 Identities = 72/391 (18%), Positives = 134/391 (34%), Gaps = 24/391 (6%)

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 305
           ++D SN +LT  +P+ L       + L+LS N++   L   +   L+ L+ L+L  NR  
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 306 GEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQL 363
             +   +      LE L +++N L   I      +  L+++ +  N  +  P+  EF  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 364 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
             L  L +S              L +  + L     H +          +   L L ++ 
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 424 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483
            +         ++ L HL L +  L  E   +L           +  N+           
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG-- 541
           ++         P E   I+      +   E+  +      +  I ++     L       
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 542 --------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 593
                     LS +           + +    LN + N  T S+    S LK +++L L 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 594 NNKLN--GKIPHQLVELKTLEVFSVAYNNLS 622
            N L    K+      + +LE   V+ N+L+
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 75/455 (16%), Positives = 156/455 (34%), Gaps = 43/455 (9%)

Query: 190 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQ 246
           I     LR L +S+N IR  +   +         L V +N +  +      S   M  L+
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI------SCCPMASLR 124

Query: 247 ILDLSNNHLTGEIPEHLAVGC-VNLQFLALSNNNLQGHLFSRNFNL-TNLQWLQLEGNRF 304
            LDLS N     +P     G    L FL LS    +        +L  +   L L     
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 305 VGEIPQSLSK-CSSLEGLYLNNNSLLGKI------PRWLGNLTRLQYIIMPNNHLEGPIP 357
            G   +SL    +++  L  + NSL                L+ ++        L   + 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 358 VEFCQLD----SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS- 412
                      +LQ ++ +       L   F P  ++ +++    +  ++ R  F     
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 413 ---SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
              SL+   +       S        ++++  +L  ++      V     +    L+ + 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N     +          ++     +  + F     +  +   LE  +  +    +     
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 589
                    +  L+LS N L G +   +    +++ L+L +N +  SIP   ++L+ ++ 
Sbjct: 423 TCAW--AESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 590 LDLSNNKLNGKIPH----QLVELKTLEVFSVAYNN 620
           L++++N+L   +P     +L  L+ +      ++N
Sbjct: 478 LNVASNQLK-SVPDGVFDRLTSLQYIW----LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 6e-18
 Identities = 69/404 (17%), Positives = 135/404 (33%), Gaps = 48/404 (11%)

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
                 +  L++L LS+N +   +  H+ +   +L++L +S+N LQ         + +L+
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR 124

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355
            L L  N F       L  C                     GNLT+L ++ +        
Sbjct: 125 HLDLSFNDF-----DVLPVCKE------------------FGNLTKLTFLGLSAAKFRQ- 160

Query: 356 IPVEFCQLDSLQI----LDISDNNISGSLPSCFHPLSIKQVHL--SKNMLHGQLKRGTFF 409
             ++   +  L +    LD+   +I G         +   +HL    N L       +  
Sbjct: 161 --LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 410 NCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHNNLEGEVSV---QLCELNQL 462
               L   ++  N  N     +    +     L ++ L H     + SV   Q      +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 463 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 522
           + L++ N  +   I       +     S      +     FS E       + N ++   
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 523 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
           +     ++      S  + L+ + N     +      L R+QTL L  N L  +      
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397

Query: 583 NLKHVESLDLSNNKLN----GKIPHQLVELKTLEVFSVAYNNLS 622
             K++ SL+  +  LN              +++ V +++ N L+
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 56/358 (15%), Positives = 108/358 (30%), Gaps = 71/358 (19%)

Query: 11  RSQGLCSLVHLQELYIASNDLRGSLP------WCMANMTSLRIL----DVSSNQLTGSIS 60
           R   L  + HL    I  + +   +         + N T L ++     + S Q+  S++
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
           +   + L++I+      N  ++   L  L     L     ++ E   + +          
Sbjct: 219 ALGHLQLSNIKLND--ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 121 QLNTLSLSSN-YGDGFIFPKFLYHQHDLEYVDLSHIKMNG--EFPNWLLENNTKLETLFL 177
            +  L++ +    +     +F Y +  L+ + + H+K          L     ++    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 178 VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237
                     +   S      L+ + N        +    L  L       N L  +   
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394

Query: 238 SFG---NMKFL-------------------------QILDLSNNHLTGEIPEHLAVGCVN 269
                 NM  L                          +L+LS+N LTG +   L      
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP---K 451

Query: 270 LQFLALSNNNLQG------------HLF-SRNF----------NLTNLQWLQLEGNRF 304
           ++ L L NN +               L  + N            LT+LQ++ L  N +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (276), Expect = 1e-25
 Identities = 79/473 (16%), Positives = 152/473 (32%), Gaps = 100/473 (21%)

Query: 21  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
                 A+ +++ +       + +L  LD  ++ +T     + +  LT + +L+ ++N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 81  QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF-QLNTLSLSSNYGDGFIFPK 139
              I+   L   + L     ++N++        +L      +L  L+  +N         
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-------NLDVTPLTKLTYLNCDTN--------- 116

Query: 140 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL 199
                  L  +D+S               N  L  L    ++L     + +  + +L +L
Sbjct: 117 ------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 200 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 259
           D   N     + V     L +L    N +  LD          K L  L+   N++T ++
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCDTNNIT-KL 206

Query: 260 PEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319
                   + L FL  S+N L     +    LT L +     N    E+   +S  S L 
Sbjct: 207 D---LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSKLT 257

Query: 320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 379
            L+     LL +I   L + T+L Y           +  +      L +LD     I+  
Sbjct: 258 TLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-E 311

Query: 380 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS 439
           L                                 LV L L+   L   +   V   ++L 
Sbjct: 312 LD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 440 HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 492
            L   + +++ + S  + ++  L     +             N +L  + S  
Sbjct: 343 SLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (259), Expect = 1e-23
 Identities = 68/408 (16%), Positives = 125/408 (30%), Gaps = 74/408 (18%)

Query: 216 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275
           D   S       M A D     S   +  L  LD  N+ +T ++          L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
           ++NN+     S     TNL +L  + N+    +   ++  + L  L  + N L  K+   
Sbjct: 72  TSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKLD-- 122

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
           +     L Y+    N L     ++      L  LD   N     L        +  +  S
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCS 178

Query: 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 455
            N    ++          L  L+   N +   +   ++   QL+ L    N L     + 
Sbjct: 179 FN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT---EID 228

Query: 456 LCELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 514
           +  L QL   D S N L           TTLH   ++                       
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD----------------------- 265

Query: 515 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574
                      ++ +       + L        + I  +   + + T++  L+     +T
Sbjct: 266 -------LLEIDLTH------NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

Query: 575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
             +    S    +  L L+N +L  ++   +     L+  S    ++ 
Sbjct: 311 -ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 6e-23
 Identities = 79/386 (20%), Positives = 138/386 (35%), Gaps = 49/386 (12%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
           G+  L  L +L   SN++  +L   ++  T+L  L   SN+LT    +  +  LT +  L
Sbjct: 59  GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT----NLDVTPLTKLTYL 111

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
               N     ++   +     L   N   N +  EI  SH+      QL  L    N   
Sbjct: 112 NCDTN----KLTKLDVSQNPLLTYLNCARNTLT-EIDVSHNT-----QLTELDCHLN--- 158

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
             I    +  Q  L  +D S  K+  E     +  N  L  L    +++    +L ++ +
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNIT---KLDLNQN 211

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L  LD S+N +   I V     L       N +  LD         +  L  L     
Sbjct: 212 IQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELD------VSTLSKLTTLHCIQT 264

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
            L  EI          L +           L     + T L  L  +      E+   LS
Sbjct: 265 DLL-EID---LTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT-ELD--LS 315

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
           +   L  LYLNN  L  ++   + + T+L+ +   N H++        ++ +L     ++
Sbjct: 316 QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAE 370

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNML 399
                ++P      +   + +S ++L
Sbjct: 371 GQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 81/507 (15%), Positives = 140/507 (27%), Gaps = 95/507 (18%)

Query: 172 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 231
             +       +     +       L  LD  N++I     ++    L  L   +N++  L
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL 291
           D            L  L   +N LT  +          L +L    N L     S     
Sbjct: 80  D------LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
             L +L    N    EI   +S  + L  L  + N  + K+   +   T+L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 411
           +     ++  Q   L  L+   NNI+  L                               
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLD--------------------------LNQN 211

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
             L  LD S N+L   I   V  L+QL++     N L     + +  L++L  L     +
Sbjct: 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD 265

Query: 472 LHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530
           L    +                    +                     + +     I  +
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELD-------------VTHNTQLYLLDCQAAGITEL 312

Query: 531 YQGKVLSLLSGLDLSCNKL----IGHIP---------------PQIGNLTRIQTLNLSHN 571
              +    L  L L+  +L    + H                   +G +  +     +  
Sbjct: 313 DLSQ-NPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEG 371

Query: 572 NLTGSIPSTFSNLK-----HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
                   T +N         + LD   N +N  I      +      ++ + NLS + P
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNP 429

Query: 627 EWKAQFATFNESSYEGNTFLCGLPLPI 653
                F + N +     T     P PI
Sbjct: 430 AVTYTFTSENGAIVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 59/316 (18%), Positives = 99/316 (31%), Gaps = 39/316 (12%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
           +     L  L  A N L   +   +++ T L  LD   N+    I+   +   T +  L 
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLD 176

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
            S N     I+   +     L   N + N I  ++  + ++     QL  L  SSN    
Sbjct: 177 CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLDLNQNI-----QLTFLDCSSNKLTE 226

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
                       L Y D S   +  E         +KL TL  +   L     + +  + 
Sbjct: 227 IDVTPLT----QLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL---EIDLTHNT 275

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
           +L             + V     L  L      +  LD            L  L L+N  
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD------LSQNPKLVYLYLNNTE 329

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           LT E+          L+ L+  N ++Q   FS    +  L        + +    ++L+ 
Sbjct: 330 LT-ELD---VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 315 CSSLEGLYLNNNSLLG 330
            S    +  +     G
Sbjct: 384 NSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 47/284 (16%), Positives = 84/284 (29%), Gaps = 39/284 (13%)

Query: 3   SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSS 62
            C +N  +    +     L  L  + N +   L   ++    L  L+  +N +T      
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT----KL 206

Query: 63  PLVHLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 121
            L     +  L  S+N    I ++       ++L  F+   N +      + S      +
Sbjct: 207 DLNQNIQLTFLDCSSNKLTEIDVT-----PLTQLTYFDCSVNPLTELDVSTLS------K 255

Query: 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181
           L TL                     L Y      +   E     + +NT+L  L      
Sbjct: 256 LTTLHCIQTDLLEIDLTHNT----QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAG 308

Query: 182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 241
           +     L +  + +L  L ++N  +   + V     L SL   N  +        SS G 
Sbjct: 309 IT---ELDLSQNPKLVYLYLNNTELT-ELDVSHNTKLKSLSCVNAHIQDF-----SSVGK 359

Query: 242 MKFLQILDLSNNHLTGEIPEHLA----VGCVNLQFLALSNNNLQ 281
           +  L     +         E L        V+   L    N + 
Sbjct: 360 IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (267), Expect = 2e-24
 Identities = 51/305 (16%), Positives = 105/305 (34%), Gaps = 49/305 (16%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
           ++      + N     +   + +    L +   ++++L  ++P        + +L+++ N
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ------ITVLEITQN 90

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
            L   +PE  A    +L++L   +N L   L        +L+ L ++ N+    +P+  +
Sbjct: 91  ALI-SLPELPA----SLEYLDACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLPELPA 140

Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
               LE +  +NN L   +P    +L  L    + NN L   +P      +SL+ LD+S 
Sbjct: 141 ---LLEYINADNNQL-TMLPELPTSLEVL---SVRNNQLTF-LPE---LPESLEALDVST 189

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 433
           N +  SLP+                   +          + +      NR+   IP+ + 
Sbjct: 190 NLLE-SLPAVP----------------VRNHHSE----ETEIFFRCRENRIT-HIPENIL 227

Query: 434 GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 493
            L     +IL  N L   +   L +                                 + 
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 494 SPDEQ 498
            P+ +
Sbjct: 288 FPENK 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 1e-21
 Identities = 61/400 (15%), Positives = 102/400 (25%), Gaps = 105/400 (26%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL-FSRNFNLT 292
           SI     N   L   +   N ++              +  AL   N    +   +   + 
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
               LQL        +P +L     +  L +  N+L   +P    +L  L      +N L
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL-ISLPELPASLEYLD---ACDNRL 112

Query: 353 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 412
              +P       SL+ LD+ +N ++  LP                              +
Sbjct: 113 ST-LPELPA---SLKHLDVDNNQLT-MLPELP---------------------------A 140

Query: 413 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNN 471
            L  ++   N+L   +P+     + L  L + +N L       L      L+ LD+S N 
Sbjct: 141 LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-----FLPELPESLEALDVSTNL 191

Query: 472 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531
           L   +P         E                                            
Sbjct: 192 LES-LPAVPVRNHHSEE------------------------------------------- 207

Query: 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 591
                          N+ I HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 208 ------TEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 592 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ 631
                 +     Q        +                +Q
Sbjct: 261 GPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 58/331 (17%), Positives = 101/331 (30%), Gaps = 66/331 (19%)

Query: 316 SSLEGLYLNNN--SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
            SL      N                 +    +   N  E    ++ C ++    L ++ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQ--ALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 433
            N+S SLP    P  I  + +++N L   L        +SL  LD   NRL+ ++P+   
Sbjct: 69  LNLS-SLPDNL-PPQITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPE--- 117

Query: 434 GLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHGPIPPCFDN-TTLHESYSN 491
             + L HL + +N L       L EL   L+ ++  NN L   +P    +   L    + 
Sbjct: 118 LPASLKHLDVDNNQLT-----MLPELPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQ 171

Query: 492 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 551
            +   E                                         L  LD+S N L  
Sbjct: 172 LTFLPEL-------------------------------------PESLEALDVSTNLLE- 193

Query: 552 HIPPQIGNLTRIQT----LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 607
            +P         +          N +T  IP    +L    ++ L +N L+ +I   L +
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 608 LKTLEVFSVAYNNLSGEIPEWKAQFATFNES 638
                 +       S    +         ++
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 3e-16
 Identities = 73/445 (16%), Positives = 139/445 (31%), Gaps = 73/445 (16%)

Query: 34  SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 93
           S+   + N  SL   +   N ++    +         E+  L        +SL      +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 94  RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 153
           +          +   + ++   + P  Q+  L ++ N                     L 
Sbjct: 60  QFSELQLNRLNLS-SLPDN---LPP--QITVLEITQN--------------------ALI 93

Query: 154 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 213
            +      P         LE L   ++ L+    LP      L+ LDV NN +   +P  
Sbjct: 94  SL------PELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQLT-MLPEL 138

Query: 214 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 273
               L  +   NN +  L    P    +   L++L + NN LT  +PE       +L+ L
Sbjct: 139 PAL-LEYINADNNQLTML----PELPTS---LEVLSVRNNQLT-FLPELPE----SLEAL 185

Query: 274 ALSNNNLQG--HLFSRNFNLTNLQ-WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG 330
            +S N L+    +  RN +    + + +   NR    IP+++        + L +N L  
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 331 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIK 390
           +I   L   T       P  +    +           + D        +  S        
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS-------- 294

Query: 391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---IPDWVDGLSQLSHLILGHNN 447
            V    +    +    TF      ++  +S    +G    +  W++ LS  + L      
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354

Query: 448 LEGEVSVQLCELNQLQLLDLSNNNL 472
           +  + +    +   L   +L    L
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 3e-12
 Identities = 61/320 (19%), Positives = 106/320 (33%), Gaps = 63/320 (19%)

Query: 16  CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
           C +    EL +   +L  SLP  +     + +L+++ N L  S+   P     S+E L  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDA 107

Query: 76  SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 135
            +N      +L  L   + LK  + +NN    ++T    L A    L  ++  +N     
Sbjct: 108 CDNRLS---TLPELP--ASLKHLDVDNN----QLTMLPELPA---LLEYINADNN----- 150

Query: 136 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
                           L+ +      P       T LE L + N+ L     LP    + 
Sbjct: 151 ---------------QLTML------PELP----TSLEVLSVRNNQLTFLPELP----ES 181

Query: 196 LRQLDVSNNNIRGHIPVKIGDV---LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
           L  LDVS N +   +P           +   F    N +   IP +  ++     + L +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILED 239

Query: 253 NHLTGEIPEHLAVGC----VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 308
           N L+  I E L+        +   +  S ++ Q +   R        W        V +I
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 309 PQSLSKCSSLEGLYLNNNSL 328
             +              + L
Sbjct: 300 WHAFEHEEHANTFSAFLDRL 319

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 44/242 (18%)

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLDLSYN 422
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 423 RLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 480
            +  ++     GL QL HL   H+NL+   E SV    L  L  LD+S+ +        F
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 481 DN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 536
           +       L  + ++                   F E    +IF               L
Sbjct: 147 NGLSSLEVLKMAGNS-------------------FQENFLPDIFTE-------------L 174

Query: 537 SLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
             L+ LDLS  + +  + P    +L+ +Q LN+SHNN        +  L  ++ LD S N
Sbjct: 175 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 596 KL 597
            +
Sbjct: 234 HI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 7/182 (3%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 364
            +P  +   SS   L L +N L          LT+L  + + +N L   G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 424 LNGSIPDWVDGLSQLSHLILGHNN-LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
              +     +GLS L  L +  N+  E  +     EL  L  LDLS   L    P  F++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 483 TT 484
            +
Sbjct: 198 LS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 16/237 (6%)

Query: 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN-GEFPNWLLENNTKLETLFLVN- 179
              L L SN     +          L  + LS   ++     +      T L+ L L   
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 180 --DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237
              +++  F       ++L  LD  ++N++      +   L +L   + S      +   
Sbjct: 89  GVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNL 294
            F  +  L++L ++ N         +     NL FL LS   L+      F+   +L++L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSL 201

Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL-TRLQYIIMPNN 350
           Q L +  N F           +SL+ L  + N ++    + L +  + L ++ +  N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 60/314 (19%), Positives = 93/314 (29%), Gaps = 87/314 (27%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-GSISSSPLVHLTSIEELMLSNN 78
               L + SN L+         +T L  L +SSN L+     S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 79  YFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFP 138
              + I++   F                              QL  L    +        
Sbjct: 89  --GV-ITMSSNFLGLE--------------------------QLEHLDFQHS-------- 111

Query: 139 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 198
                       +L  +     F      +   L  L +                     
Sbjct: 112 ------------NLKQMSEFSVF-----LSLRNLIYLDI--------------------- 133

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNHLTG 257
              S+ + R      I + L SL V   + N+   +     F  ++ L  LDLS   L  
Sbjct: 134 ---SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188

Query: 258 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSL--SK 314
           ++         +LQ L +S+NN    L +  +  L +LQ L    N  +    +      
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246

Query: 315 CSSLEGLYLNNNSL 328
            SSL  L L  N  
Sbjct: 247 PSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 37/264 (14%), Positives = 68/264 (25%), Gaps = 79/264 (29%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
              L+ L ++ N +  ++      +  L  LD   + L      S  + L ++  L +S+
Sbjct: 77  TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 78  NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
                                                                       
Sbjct: 136 T------------------------------------------HTRVAF----------- 142

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 197
                    LE + ++       F   +      L  L L    L        +S   L+
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 257
            L++S+NN    +                            +  +  LQ+LD S NH+  
Sbjct: 203 VLNMSHNNFF-SLD------------------------TFPYKCLNSLQVLDYSLNHIMT 237

Query: 258 EIPEHLAVGCVNLQFLALSNNNLQ 281
              + L     +L FL L+ N+  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 15/167 (8%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           SL +L  L I+    R +       ++SL +L ++ N    +        L ++  L LS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 136
               +  +S     + S L++ N  +N      +           L  L  S N+     
Sbjct: 184 QCQLEQ-LSPTAFNSLSSLQVLNMSHNNFF---SLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 137 FPKFLYHQHDLEYVDLSHIKMN--------GEFPNWLLENNTKLETL 175
             +  +    L +++L+    N          F  W+ +    L  +
Sbjct: 240 KQELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIKDQRQLLVEV 283

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 47/257 (18%), Positives = 100/257 (38%), Gaps = 19/257 (7%)

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
                 + +  +   +P +         L      L   I +    G  +L+ + +S N+
Sbjct: 13  VFLCQESKVTEIPSDLPRN------AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 280 LQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKIPR-WL 336
           +   + +  F NL  L  +++E    +  I  ++     +L+ L ++N  +   +P    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHK 124

Query: 337 GNLTRLQYIIMP-NNHLEGPIPVEFCQL-DSLQILDISDNNISGSLPSCFHPLSIKQVHL 394
            +  +   + +  N ++       F  L     IL ++ N I     S F+   + +++L
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVS 453
           S N    +L    F   S  V LD+S  R++ S+P +  + L +L        NL+   +
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR--ARSTYNLKKLPT 241

Query: 454 VQLCELNQLQLLDLSNN 470
           ++  +L  L    L+  
Sbjct: 242 LE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 54/244 (22%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFL 245
            +P    +   +L      +R  I          L     S N +   I +  F N+  L
Sbjct: 23  EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 246 QILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
             + +   N+L   I         NLQ+L +SN  ++        +      L ++ N  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 305 VGEIPQSLSK--CSSLEGLYLNNNSLLGKIPRWLGNLTRL-QYIIMPNNHLEGPIPVE-F 360
           +  I ++           L+LN N +  +I     N T+L +  +  NN+LE  +P + F
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVF 198

Query: 361 CQLDSLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419
                  ILDIS   I  SLPS     L      L     +   K  T     +L+   L
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLK----KLRARSTYNLKKLPTLEKLVALMEASL 253

Query: 420 SYNR 423
           +Y  
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 43/257 (16%), Positives = 79/257 (30%), Gaps = 44/257 (17%)

Query: 365 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
           +   L      +       F     ++++ +S+N +   ++   F N   L  + +    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 424 LNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFD 481
               I       L  L +L++ +  ++    V      Q  LLD+ +N     I    F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG--KVLSLL 539
             +                                  I       I  I+        L 
Sbjct: 151 GLS------------------------------FESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 540 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL 597
             L+LS N  +  +P  +    +    L++S   +  S+PS    NLK + +    N K 
Sbjct: 181 E-LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK- 237

Query: 598 NGKIP--HQLVELKTLE 612
             K+P   +LV L    
Sbjct: 238 --KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 62/414 (14%), Positives = 113/414 (27%), Gaps = 98/414 (23%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 304
           ++     + +T EIP  L     N   L      L+  +    F    +L+ +++  N  
Sbjct: 12  RVFLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV 66

Query: 305 VGEIP-QSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQ 362
           +  I     S    L  + +   + L  I      NL  LQY+++ N  ++    V    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 363 LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS-LVTLDLSY 421
                +LDI DN    ++                          +F   S   V L L+ 
Sbjct: 127 SLQKVLLDIQDNINIHTIER-----------------------NSFVGLSFESVILWLNK 163

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 481
           N +   I +                                +L    NNNL       F 
Sbjct: 164 NGIQ-EIHNSA-----------------------FNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG--KVLSLL 539
             +                                  I + +   I  +     + L  L
Sbjct: 200 GAS-------------------------------GPVILDISRTRIHSLPSYGLENLKKL 228

Query: 540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN-LKHVESLDLSNNKLN 598
                   K +    P +  L  +   +L++     S    F+N  + +  L    NK  
Sbjct: 229 RARSTYNLKKL----PTLEKLVALMEASLTYP----SHCCAFANWRRQISELHPICNKSI 280

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 652
            +     +     +  S+A +N S     +   +  F+         +   P P
Sbjct: 281 LRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKP 334

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 52/357 (14%), Positives = 106/357 (29%), Gaps = 82/357 (22%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-----LFNYSRLKI 97
            +   L     +L   I          +E++ +S N   +   +E      L     ++I
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRI 86

Query: 98  FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 157
                N +                             +I P+   +  +L+Y+ +S+  +
Sbjct: 87  EK--ANNLL----------------------------YINPEAFQNLPNLQYLLISNTGI 116

Query: 158 NGEFPNWLLENNTKLETLFLV-NDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPV 212
               P+    ++ +   L +  N ++       F            L ++ N I+  I  
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQ-EIH- 170

Query: 213 KIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 272
                                   S+F   +  ++    NN+L  E+P  +  G      
Sbjct: 171 -----------------------NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206

Query: 273 LALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK 331
           L +S   +   L S    NL  L+       +   ++P +L K  +L    L   S    
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPSHCCA 261

Query: 332 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
              W   ++ L  I    N       V++      Q   ++++N S          +
Sbjct: 262 FANWRRQISELHPI---CNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYT 315

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.7 bits (225), Expect = 4e-20
 Identities = 59/304 (19%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 38  CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
           C  N +  +    S+    G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 98  FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQH-DLEYVDLSHIK 156
                  I + I      +     L  L+L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 157 MNGEFPNWLLE----NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPV 212
                  WL E        L+ L +            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 213 KIGDV------LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 266
                      L  L + N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 326
              L  L LS   L+  +         L  L L  NR     P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 327 SLLG 330
             L 
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 64/363 (17%), Positives = 105/363 (28%), Gaps = 85/363 (23%)

Query: 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 283
           ++++ N L  +    +G  + L+ L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 284 LFS---RNFNLTNLQWLQLEGNRFVGEIPQSLSKCS--SLEGLYLNNNSLLGKIPRWLGN 338
           +     R   ++ LQ L LE     G  P  L + +   L  L L N S       WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 339 L-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH 393
           L       L+ + +   H       +     +L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453
           L   +   +          +L  L L    +                         G  S
Sbjct: 191 LISALCPLKF--------PTLQVLALRNAGME---------------------TPSGVCS 221

Query: 454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE 513
                  QLQ LDLS+N+L         +     +  N S                    
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF------------------- 262

Query: 514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573
               ++ +                 LS LDLS N+L     P    L ++  L+L  N  
Sbjct: 263 TGLKQVPKGLPAK------------LSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPF 308

Query: 574 TGS 576
             S
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 55/321 (17%), Positives = 91/321 (28%), Gaps = 81/321 (25%)

Query: 311 SLSKCSSLEGLYLNNNSLLGKIPRW---LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
            + K  SL+ L +    +  +I      +  ++ LQ + + N  + G  P    +     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 368 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
           +  ++  N+S +    +                  L     +    L  L ++       
Sbjct: 123 LNILNLRNVSWATRDAW------------------LAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 428 IPDWVDGLSQLSHLILGHNNLEGEV----SVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483
             + V     LS L L  N   GE     ++   +   LQ+L L N  +  P   C    
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 543
                                                                  L GLD
Sbjct: 225 AA--------------------------------------------------RVQLQGLD 234

Query: 544 LSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
           LS N L            +++ +LNLS   L        + L     LDLS N+L+   P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP 290

Query: 603 HQLVELKTLEVFSVAYNNLSG 623
               EL  +   S+  N    
Sbjct: 291 -SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 34/247 (13%)

Query: 387 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW---VDGLSQLSHLIL 443
            S++ +    +      +        SL  L +   R+   I      V G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 444 GHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 503
            +  + G     L E     L  L+  N+                 S ++      E+  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNV-----------------SWATRDAWLAELQQ 145

Query: 504 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP----PQIGN 559
            ++     L         F+ +      Q +V   LS LDLS N  +G            
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCE------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 560 LTRIQTLNLSHNNLT---GSIPSTFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVFS 615
              +Q L L +  +    G   +  +    ++ LDLS+N L              L   +
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 616 VAYNNLS 622
           +++  L 
Sbjct: 260 LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 17  SLVHLQELYIASNDLR---GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
               LQ L + +  +    G      A    L+ LD+S N L  +  +      + +  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 74  MLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
            LS     Q+P  L       +L + +   N +     + +       Q+  LSL  N
Sbjct: 259 NLSFTGLKQVPKGLPA-----KLSVLDLSYNRL-----DRNPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 39/245 (15%), Positives = 63/245 (25%), Gaps = 83/245 (33%)

Query: 16  CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEE 72
                L+ L IA           +    +L  LD+S N   G      +   +   +++ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 73  LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 132
           L L N   +   +   + +                      +L A + QL  L LS N  
Sbjct: 206 LALRNAGME---TPSGVCS----------------------ALAAARVQLQGLDLSHNSL 240

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
                         L  ++LS                T L+ +         P  LP   
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSF---------------TGLKQV---------PKGLP--- 273

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
             +L  LD+S N +                             P S   +  +  L L  
Sbjct: 274 -AKLSVLDLSYNRLD--------------------------RNP-SPDELPQVGNLSLKG 305

Query: 253 NHLTG 257
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN------LKHVES 589
           +S L  L L   ++ G  PP +   T      L+  N++ +    +           ++ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 590 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
           L ++          Q+     L    ++ N   GE    
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 23/222 (10%)

Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTN 293
           +P S       + LDLS N L   +  +       LQ L LS   +Q  +    + +L++
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 294 LQWLQLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
           L  L L GN  +  +     S  SSL+ L     +L       +G+L  L+ + + +N +
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 353 -EGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-----IKQVHLSKNMLHGQLKR 405
               +P  F  L +L+ LD+S N I  S+       L         + LS N ++  ++ 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 406 GTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 446
           G F     L  L L  N+L  S+PD + D L+ L  + L  N
Sbjct: 195 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 58/295 (19%), Positives = 88/295 (29%), Gaps = 87/295 (29%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDS 365
           +IP +L    S + L L+ N L         +   LQ + +    ++  I    +  L  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 366 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           L  L ++ N I  SL                         G F   SSL  L      L 
Sbjct: 78  LSTLILTGNPIQ-SLAL-----------------------GAFSGLSSLQKLVAVETNLA 113

Query: 426 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE----LNQLQLLDLSNNNLHGPIPPCF 480
            S+ ++    L  L  L + HN ++   S +L E    L  L+ LDLS+N +        
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 540
                                                                ++  L  
Sbjct: 170 RVLH-------------------------------------------------QMPLLNL 180

Query: 541 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
            LDLS N  +  I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 57/249 (22%), Positives = 81/249 (32%), Gaps = 74/249 (29%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS LIL 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSS-PDEQF 499
            N               +Q L              F        L    +N +S  +   
Sbjct: 85  GN--------------PIQSLA----------LGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-G 558
                                               L  L  L+++ N +     P+   
Sbjct: 121 GH----------------------------------LKTLKELNVAHNLIQSFKLPEYFS 146

Query: 559 NLTRIQTLNLSHNNLTGSIPS-TFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEV 613
           NLT ++ L+LS N +  SI       L  +     SLDLS N +N  I     +   L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 614 FSVAYNNLS 622
            ++  N L 
Sbjct: 205 LALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 61/291 (20%), Positives = 96/291 (32%), Gaps = 91/291 (31%)

Query: 19  VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 78
              + L ++ N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 79  YFQIPISLEP-LFNY-SRLKIFNAENNEIKAEITESHSLIAPKF----QLNTLSLSSNYG 132
             Q   SL    F+  S L+   A    +        SL          L  L+++ N  
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNLA-------SLENFPIGHLKTLKELNVAHN-- 134

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
                              +   K+   F N             L N             
Sbjct: 135 ------------------LIQSFKLPEYFSN-------------LTN------------- 150

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
              L  LD+S+N I+  I      VL  + + N S                    LDLS 
Sbjct: 151 ---LEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLSL 186

Query: 253 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 302
           N +   I    A   + L+ LAL  N L+  +    F  LT+LQ + L  N
Sbjct: 187 NPMN-FIQPG-AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 18  LVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           L  LQ+L     +L  SL      ++ +L+ L+V+ N +          +LT++E L LS
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
           +N  Q  I    L    ++ + N   +     +         + +L  L+L +N
Sbjct: 158 SNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 86/482 (17%), Positives = 153/482 (31%), Gaps = 97/482 (20%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLF----NYSRLKIF 98
             ++ LD+   +L+ +  +  L  L   + + L +         + +         L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 99  NAENNEIKAEITE--SHSLIAPKFQLNTLSLSSN----YGDGFIFPKFLYHQHDLEYVDL 152
           N  +NE+           L  P  ++  LSL +      G G +    L     L+ + L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHL 120

Query: 153 SHIKMNGE----FPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNN 204
           S   +           LL+   +LE L L   SL      P    + +    ++L VSNN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 205 NIRGHIPVK-IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
           +I     V+ +   L                      +   L+ L L +  +T +    L
Sbjct: 181 DI-NEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCRDL 219

Query: 264 AVG---CVNLQFLALSNNNLQG---HLFSRNFNLTN--LQWLQLEGNRF----VGEIPQS 311
                   +L+ LAL +N L               +  L+ L +          G++ + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371
           L    SL+ L L  N L  +  R L          +                  L+ L +
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCET-------LLEPGC------------QLESLWV 320

Query: 372 SDNNISGSLPSCFHPLS--------IKQVHLSKNMLHG----QLKRGTFFNCSSLVTLDL 419
              + +    +C    S        + ++ +S N L      +L +G     S L  L L
Sbjct: 321 KSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 420 SYNRLN----GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL-----NQLQLLDLSNN 470
           +   ++     S+   +     L  L L +N L     +QL E        L+ L L + 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 471 NL 472
             
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.2 bits (196), Expect = 1e-15
 Identities = 84/491 (17%), Positives = 150/491 (30%), Gaps = 123/491 (25%)

Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDV 201
           D++ +D+   +++      LL    + + + L +  L           +  +  L +L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 202 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 261
            +N + G + V    VL  L   +                   +Q L L N  LTG    
Sbjct: 64  RSNEL-GDVGVHC--VLQGLQTPSCK-----------------IQKLSLQNCCLTGAGCG 103

Query: 262 HLA---VGCVNLQFLALSNNNLQG---HLFSRNF--NLTNLQWLQLEGNRF----VGEIP 309
            L+        LQ L LS+N L      L           L+ LQLE           + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLG-----NLTRLQYIIMPNNHL--EG--PIPVEF 360
             L      + L ++NN +     R L      +  +L+ + + +  +  +    +    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
               SL+ L +  N +            +    L   +LH           S L TL + 
Sbjct: 224 ASKASLRELALGSNKLGDV--------GMA--ELCPGLLHP---------SSRLRTLWIW 264

Query: 421 YNRLN----GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
              +     G +   +     L  L L  N L  E +  LCE      L      L    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-----LLEPGCQL---- 315

Query: 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG-KV 535
                  +L     +                              FT    ++       
Sbjct: 316 ------ESLWVKSCS------------------------------FTAACCSHFSSVLAQ 339

Query: 536 LSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNNLT----GSIPSTFSNLKH 586
              L  L +S N+L      ++        + ++ L L+  +++     S+ +T      
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 587 VESLDLSNNKL 597
           +  LDLSNN L
Sbjct: 400 LRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 76/363 (20%), Positives = 122/363 (33%), Gaps = 47/363 (12%)

Query: 12  SQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLT----GSISSS 62
           S  L     L EL + SN+L   G              ++ L + +  LT    G +SS+
Sbjct: 49  SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108

Query: 63  PLVHLTSIEELMLSNNYFQIP----ISLEPLFNYSRLKIFNAENNEIKAEITES-HSLIA 117
            L  L +++EL LS+N         +    L    RL+    E   + A   E   S++ 
Sbjct: 109 -LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 118 PKFQLNTLSLSSNY-GDG---FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNT 170
            K     L++S+N   +     +          LE + L    +  +    L   + +  
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 171 KLETLFLVNDSL--AGPFRL---PIHSHKRLRQLDVSNNNIRGHIPVKIGDVL---PSLY 222
            L  L L ++ L   G   L    +H   RLR L +    I       +  VL    SL 
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 223 VFNNSMNALDGSIPSSFGNM-----KFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLA 274
             + + N L                  L+ L + +   T     H +        L  L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 275 LSNNNLQG---HLFSR--NFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNN 325
           +SNN L+        +      + L+ L L            +  +L    SL  L L+N
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 326 NSL 328
           N L
Sbjct: 408 NCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 72/431 (16%), Positives = 128/431 (29%), Gaps = 101/431 (23%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLE 300
           +Q LD+    L+      L       Q + L +  L       + S       L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 301 GNRFVGEIPQSLSKC-----SSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNH 351
            N         + +        ++ L L N  L G     +   L  L  LQ + + +N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 352 LEGPIPVEFCQLD-----SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
           L        C+        L+ L +   ++S    +   PL+        ++L       
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLA--------SVLR------ 167

Query: 407 TFFNCSSLVTLDLSYNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVSVQLCEL-- 459
                     L +S N +N + +     GL     QL  L L    +  +    LC +  
Sbjct: 168 ---AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 460 --NQLQLLDLSNNNLH---------GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 508
               L+ L L +N L          G + P     TL                       
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----------------- 267

Query: 509 QGFLEKQNHEIFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKL----IGHIPPQIGN-LTR 562
                         T K    + +  +    L  L L+ N+L       +   +     +
Sbjct: 268 -------------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 563 IQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-----KTLEV 613
           +++L +   + T        S  +  + +  L +SNN+L      +L +        L V
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 614 FSVAYNNLSGE 624
             +A  ++S  
Sbjct: 375 LWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 73/469 (15%), Positives = 133/469 (28%), Gaps = 104/469 (22%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----GSIPSSFGNMKFLQILDLS 251
           ++ LD+    +      ++  +L    V       L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 252 NNHLTGE----IPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLEGNR 303
           +N L       + + L      +Q L+L N  L     G L S    L  LQ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 304 FVGEIPQSLSK-----CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
                 Q L +        LE L L   SL       L ++                   
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV------------------- 165

Query: 359 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 418
                   + L +S+N+I+ +                  +L   LK     +   L  L 
Sbjct: 166 -LRAKPDFKELTVSNNDINEA---------------GVRVLCQGLKD----SPCQLEALK 205

Query: 419 LSYNRLN----GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-----LNQLQLLDLSN 469
           L    +       +   V   + L  L LG N L      +LC       ++L+ L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK---QNHEIFEFTTKN 526
             +                        +       +   +  L++     +E+ +   + 
Sbjct: 266 CGIT----------------------AKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 527 IAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
           +      +    L  L +           H    +     +  L +S+N L  +      
Sbjct: 304 LCETLL-EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 583 N-LKHV----ESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLS 622
             L         L L++  ++      +   L+   +L    ++ N L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 62/347 (17%), Positives = 111/347 (31%), Gaps = 82/347 (23%)

Query: 12  SQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLTG---SISSSP 63
           +  L +    +EL +++ND+   G    C     +   L  L + S  +T          
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 64  LVHLTSIEELMLSNNYFQ----IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPK 119
           +    S+ EL L +N         +    L   SRL+        I A   +    +   
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA---KGCGDLCRV 279

Query: 120 FQLNT----LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG--EFPNWLLENNTKLE 173
            +       LSL+ N                        +   G       LLE   +LE
Sbjct: 280 LRAKESLKELSLAGN-----------------------ELGDEGARLLCETLLEPGCQLE 316

Query: 174 TLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
           +L++ + S        F   +  ++ L +L +SNN +      ++   L        S+ 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ----PGSV- 371

Query: 230 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQ---GH 283
                          L++L L++  ++      LA   +   +L+ L LSNN L      
Sbjct: 372 ---------------LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416

Query: 284 LFSRNF--NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
               +       L+ L L    +  E+         L+ L  +  SL
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYWSEEM------EDRLQALEKDKPSL 457

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 47/295 (15%), Positives = 82/295 (27%), Gaps = 62/295 (21%)

Query: 365 SLQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNMLHGQ--------LKRGTFFNCSSL 414
            +Q LDI    +S              + V L    L           L+        +L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-----VNPAL 58

Query: 415 VTLDLSYNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVSVQLCEL----NQLQLL 465
             L+L  N L    +   + GL     ++  L L +  L G     L         LQ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 466 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF-LEKQNHEIFEFTT 524
            LS+N L                       D   ++           LEK   E    + 
Sbjct: 119 HLSDNLLG----------------------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 525 KNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNNLT---- 574
            +   +    +       L +S N +       +      +  +++ L L    +T    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 575 GSIPSTFSNLKHVESLDLSNNKLNGK-----IPHQLVELKTLEVFSVAYNNLSGE 624
             +    ++   +  L L +NKL         P  L     L    +    ++ +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 12/199 (6%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            + +   +  +       +P  L        L+L+ N L       L   TRL  + +  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTF 408
             L   + V    L  L  LD+S N +  SLP     L  +  + +S N L   L  G  
Sbjct: 65  AELTK-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467
                L  L L  N L  ++P  +     +L  L L +NNL    +  L  L  L  L L
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 468 SNNNLHGPIPP-CFDNTTL 485
             N+L+  IP   F +  L
Sbjct: 180 QENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 303
              ++    +LT  +P  L     +   L LS N L            T L  L L+   
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQ 362
            + ++         L  L L++N L   +P     L  L  + +  N L   +P+     
Sbjct: 67  -LTKLQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRG 122

Query: 363 LDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +L TL L 
Sbjct: 123 LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQ 180

Query: 421 YNRLNGSIPDWVDGLSQLSHLILGHN 446
            N L  +IP    G   L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 10/183 (5%)

Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
                L L  + L       +  + RL QL++    +   + V     LP L   + S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 230 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 289
            L  S+P     +  L +LD+S N LT  +P     G   LQ L L  N L+  L     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 290 -NLTNLQWLQLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM 347
                L+ L L  N    E+P  L +   +L+ L L  NSL   IP+       L +  +
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 348 PNN 350
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 47/233 (20%), Positives = 73/233 (31%), Gaps = 38/233 (16%)

Query: 168 NNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 226
                  +     +L   P  LP         L +S N +     +        L   N 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKD----TTILHLSENLLY-TFSLATLMPYTRLTQLNL 62

Query: 227 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 286
               L   +    G +  L  LDLS+N L   +P         L  L +S N L   L  
Sbjct: 63  DRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLT-SLPL 117

Query: 287 RNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
                L  LQ L L+GN       ++L                    P  L    +L+ +
Sbjct: 118 GALRGLGELQELYLKGNEL-----KTLP-------------------PGLLTPTPKLEKL 153

Query: 346 IMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
            + NN+L   +P      L++L  L + +N++       F    +    L  N
Sbjct: 154 SLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 50/238 (21%)

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
           S   ++    N++ +LP    P     +HLS+N+L       T    + L  L+L    L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL 67

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN- 482
              +      L  L  L L HN L+  + +    L  L +LD+S N L   +P       
Sbjct: 68  T-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGL 123

Query: 483 TTLHESY--SN--SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 538
             L E Y   N   + P                                           
Sbjct: 124 GELQELYLKGNELKTLPPGLLT----------------------------------PTPK 149

Query: 539 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           L  L L+ N L   +P  +   L  + TL L  N+L  +IP  F     +    L  N
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 47/208 (22%), Positives = 75/208 (36%), Gaps = 47/208 (22%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
                L LS N L       +   ++L+ L L    L  ++ V    L  L  LDLS+N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 472 LHGPIPPCFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN 526
           L   +P         T L  S++  +S P                               
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR-------------------------- 121

Query: 527 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNL 584
                    L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P+   + L
Sbjct: 122 --------GLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 585 KHVESLDLSNNKLNGKIPHQLVELKTLE 612
           +++++L L  N L   IP        L 
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
            + L+ L+L   +L   +    G L  + TL+LSHN L  S+P     L  +  LD+S N
Sbjct: 54  YTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 596 KLNGKIP----HQLVELKTLEVFSVAYNNLS 622
           +L   +P      L EL+ L    +  N L 
Sbjct: 111 RLT-SLPLGALRGLGELQEL---YLKGNELK 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 4e-18
 Identities = 58/433 (13%), Positives = 128/433 (29%), Gaps = 30/433 (6%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           + +    +  I+   P    D        N    ++  ++      +  +  +  +N+ +
Sbjct: 1   MGETITVSTPIKQIFPD---DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315
              + + +     N+  L L+ N L         NL NL WL L+ N+ + ++  SL   
Sbjct: 56  K-SV-QGIQ-YLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDL 108

Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 375
             L+ L L +N +   I   L +L +L+ + + NN +         +L  L  L + DN 
Sbjct: 109 KKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 376 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 435
           IS  +        ++ ++LSKN +             +L  L+L          +    L
Sbjct: 165 IS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 436 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF--------DNTTLHE 487
              + +     +L       + +    +  ++  +         F               
Sbjct: 221 VVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

Query: 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547
               +    E + + + ++G     + +               Y  K            N
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN 338

Query: 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 607
               ++      L  +     +   +  +    +             +    +       
Sbjct: 339 FNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHR 398

Query: 608 LKTLEVFSVAYNN 620
            K L V   A N 
Sbjct: 399 CKALTVDREARNG 411

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 51/313 (16%), Positives = 105/313 (33%), Gaps = 75/313 (23%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
              +     +  +    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L+ N  ++   ++PL N   L     + N+IK +++    L     +L +LSL  N   
Sbjct: 71  FLNGN--KL-TDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLK----KLKSLSLEHNG-- 120

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                             +S I          L +  +LE+L+L N+ +       +   
Sbjct: 121 ------------------ISDING--------LVHLPQLESLYLGNNKITDI--TVLSRL 152

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L  L + +N I                            I      +  LQ L LS N
Sbjct: 153 TKLDTLSLEDNQIS--------------------------DI-VPLAGLTKLQNLYLSKN 185

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
           H++ ++   LA G  NL  L L +        +   NL     ++          P+ +S
Sbjct: 186 HIS-DLRA-LA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 314 KCSSLEGLYLNNN 326
                E   +  +
Sbjct: 241 DDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 3e-15
 Identities = 49/269 (18%), Positives = 103/269 (38%), Gaps = 24/269 (8%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
             V  +     L  + ++   ++D++ S+   +  + ++  L ++ N+LT      PL +
Sbjct: 31  KSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT---DIKPLTN 85

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
           L ++  L L  N  +I   L  L +  +LK  + E+N I  +I     L     QL +L 
Sbjct: 86  LKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLP----QLESLY 137

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 186
           L +N          L     L+ + L   +++   P   L   TKL+ L+L  + ++   
Sbjct: 138 LGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL- 190

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDG-SIPSSFGNMK 243
              +   K L  L++ +            +  V  ++   + S+   +  S    +    
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

Query: 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQF 272
               L    N ++    + + +G    +F
Sbjct: 250 VKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 7e-15
 Identities = 52/327 (15%), Positives = 105/327 (32%), Gaps = 51/327 (15%)

Query: 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
           +      +  +    P             +    +   +     +L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 378 GSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 436
            S+    +  ++ ++ L+ N    +L       N  +L  L L  N++   +   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 496
           +L  L L HN +  +++  L  L QL+ L L NN +   I      T L           
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD-ITVLSRLTKLDT--------- 157

Query: 497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 556
                  S+E +Q                 I+ I     L+ L  L LS N  I  +   
Sbjct: 158 ------LSLEDNQ-----------------ISDIVPLAGLTKLQNLYLSKNH-ISDLRA- 192

Query: 557 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616
           +  L  +  L L          +  SNL    ++  ++  L    P  + +    E  +V
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNV 250

Query: 617 AYNNLSGEIPEWKAQFATFNESSYEGN 643
            ++            +        +  
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 9e-14
 Identities = 51/309 (16%), Positives = 110/309 (35%), Gaps = 54/309 (17%)

Query: 70  IEELMLSNNYFQIPIS-LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 128
           + E +  +     PI  + P   ++     N +   +   +T++         ++ +  +
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-----SIDQIIAN 51

Query: 129 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 188
           ++                    D+  ++         ++    +  LFL  + L      
Sbjct: 52  NS--------------------DIKSVQG--------IQYLPNVTKLFLNGNKLTDIK-- 81

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
           P+ + K L  L +  N I+    +K    L SL + +N ++ ++G       ++  L+ L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESL 136

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 308
            L NN +T      L+     L  L+L +N +          LT LQ L L  N  + ++
Sbjct: 137 YLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL 190

Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368
            ++L+   +L+ L L +   L K      NL     +   +  L  P  +        + 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG--DYEK 247

Query: 369 LDISDNNIS 377
            ++  +   
Sbjct: 248 PNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 7e-10
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 3   SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSS 62
           S E NG+    GL  L  L+ LY+ +N +       ++ +T L  L +  NQ++      
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIV 169

Query: 63  PLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQL 122
           PL  LT ++ L LS N   I   L  L     L +    + E   +     S +      
Sbjct: 170 PLAGLTKLQNLYLSKN--HI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNL---VVP 223

Query: 123 NTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
           NT+  +       + P+ +    D E  ++             +    
Sbjct: 224 NTVKNTDGS---LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVG 306
             ++   +   IP        + Q L L   +L+  + S  F NL N+  + +  +  + 
Sbjct: 16  FRVTCKDIQ-RIPSLPP----STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 307 EIP-QSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEG-PIPVEFCQL 363
           ++   S    S +  + + N   L  I    L  L  L+++ + N  L+  P   +    
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 364 DSLQILDISDNNISGSLPS-CFHPLS--IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           D   IL+I+DN    S+P   F  L      + L  N     ++    FN + L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNGTKLDAVYLN 187

Query: 421 YNRLNGSIPDWV-DGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470
            N+    I      G+ S  S L +   ++    ++    L  L+ L   N 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 44/265 (16%)

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
           C+    +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 421 YNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIPP 478
            +     +       LS+++H+ + +      +     + L  L+ L + N  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL------ 117

Query: 479 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG---KV 535
                           PD      +S +         N          +  I       +
Sbjct: 118 -------------KMFPDLTK--VYSTDIFFILEITDN--------PYMTSIPVNAFQGL 154

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHV-ESLDLS 593
            +    L L  N     +     N T++  + L+ N     I    F  +      LD+S
Sbjct: 155 CNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 594 NNKLN---GKIPHQLVELKTLEVFS 615
              +     K    L EL     ++
Sbjct: 214 QTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 12/201 (5%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNH 254
            + L +   ++R  IP      LP++     S++     + S SF N+  +  +++ N  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNLQGHL--FSRNFNLTNLQWLQLEGNRFVGEIPQSL 312
               I          L+FL + N  L+      ++ ++      L++  N ++  IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 313 --SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHLEGPIPVEFCQLDS-LQI 368
               C+    L L NN     +  +  N T+L  + +  N +L       F  + S   +
Sbjct: 151 FQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 369 LDISDNNISGSLPS-CFHPLS 388
           LD+S  +++ +LPS     L 
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 43/290 (14%), Positives = 79/290 (27%), Gaps = 71/290 (24%)

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
           C   E   +    +  +IP    +   L+   +   HL       F  L ++  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 375 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-- 430
                L S  F+ L  +  + +        +          L  L +    L    PD  
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 431 WVDGLSQLSHLILGHNNLEGEVSVQLCE--LNQLQLLDLSNNNLHGPIPPC-FDNTTLHE 487
            V        L +  N     + V   +   N+   L L NN     +    F+ T L  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDA 183

Query: 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547
                                                           + L        N
Sbjct: 184 ------------------------------------------------VYLNK------N 189

Query: 548 KLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSN 594
           K +  I      G  +    L++S  ++T ++PS    +LK + + +   
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
           L  +S + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 594 NNKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEIPE 627
           N  L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 18/214 (8%)

Query: 21  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
            Q L +    LR       +N+ ++  + VS +     + S    +L+ +  + + N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 81  QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK- 139
              I  + L     LK     N  +K       + +        L ++ N     I    
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 140 FLYHQHDLEYVDLSHIKMNG--EFPNWLLENNTKLETLFLV-NDSLAGPFRLPIHS---- 192
           F    ++   + L +   NG      +   N TKL+ ++L  N  L     +   +    
Sbjct: 151 FQGLCNETLTLKLYN---NGFTSVQGYAF-NGTKLDAVYLNKNKYLT---VIDKDAFGGV 203

Query: 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 226
           +     LDVS  ++   +P K  + L  L   N 
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
           L  + + N ++  L G           ++ L ++N H T      ++ G  NL+ L +  
Sbjct: 46  LTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 337
            ++          LT+L  L +  +     I   ++    +  + L+ N  +  I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 32/189 (16%)

Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
           +   M  L  + L+N ++T ++   +     N++ L ++N +     ++    L+NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
           ++ G     +   +LS  +SL  L +++++    I   +  L ++  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 358 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417
                L  L+ L+I  + +       +  +                      +   L  L
Sbjct: 154 -PLKTLPELKSLNIQFDGVHD-----YRGIE---------------------DFPKLNQL 186

Query: 418 DLSYNRLNG 426
                 + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            + +L ++ L     V ++   +    +++ L +NN       P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF 408
             +          L SL +LDIS +    S+ +  + L  +  + LS N     +     
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL 155

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451
                L +L++ ++ ++      ++   +L+ L      + G+
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 32/243 (13%), Positives = 70/243 (28%), Gaps = 84/243 (34%)

Query: 357 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 416
            +   Q++SL  + +++ N++           +    +                  ++  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLT--GIE--------------YAHNIKD 70

Query: 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
           L ++        P  + GLS L  L +   ++  +    L  L  L LLD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 536
               +                                                      L
Sbjct: 129 LTKINT-----------------------------------------------------L 135

Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
             ++ +DLS N  I  I P +  L  +++LN+  + +         +   +  L   +  
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 597 LNG 599
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
           N +IPD         + +LG ++     ++   ++N L  + L+N N+            
Sbjct: 14  NVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT----------- 57

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                               + G +      N +       +         LS L  L +
Sbjct: 58  -------------------DLTGIEYA---HNIKDLTINNIHATNYNPISGLSNLERLRI 95

Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
               +     P +  LT +  L++SH+    SI +  + L  V S+DLS N     I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 605 LVELKTLEVFSVAYNNLS 622
           L  L  L+  ++ ++ + 
Sbjct: 155 LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 625
             +  I  ++  L  +    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 29/168 (17%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 39  MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 98
            A M SL  + +++  +T     + + +  +I++L ++N +     +  P+   S L+  
Sbjct: 40  EAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERL 93

Query: 99  NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 158
                ++ ++   +   ++    L  L +S +  D  I  K +     +  +DLS+    
Sbjct: 94  RIMGKDVTSDKIPN---LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

Query: 159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 206
            +     L+   +L++L +  D +       I    +L QL   +  I
Sbjct: 150 TDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
            L  L  L  L I+ +    S+   +  +  +  +D+S N     I   PL  L  ++ L
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSL 164

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 105
            +  +   +      + ++ +L    A +  I
Sbjct: 165 NIQFD--GV-HDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
           +   + LE L ++   +       +     L  LD+S++     I  KI   LP +   +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQG 282
            S N     I      +  L+ L++  + +      E        L  L   +  + G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
            +  L +L+ L I   D+       ++ +TSL +LD+S +        + +  L  +  +
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSI 141

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
            LS N   I   + PL     LK  N + + +       +  I    +LN L   S 
Sbjct: 142 DLSYNG-AIT-DIMPLKTLPELKSLNIQFDGVH-----DYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/162 (14%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           +  L  + +A+ ++       +    +++ L +++   T   + +P+  L+++E L +  
Sbjct: 43  MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMG 97

Query: 78  NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
                   +  L   + L + +  ++     I      I    ++N++ LS N     I 
Sbjct: 98  KDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIM 153

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
           P  L    +L+ +++    ++       +E+  KL  L+  +
Sbjct: 154 P--LKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
           + A I + + ++ L+ + L+    +  +   I     I+ L +++ + T    +  S L 
Sbjct: 34  STANITEAQ-MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLS 88

Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
           ++E L +    +       L  L +L +  ++++     I  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 6e-16
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 364
            +PQSL   S    L L++N+L      W    LT L  +++ +NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 365 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           +L+ LD+S N++  +L    F  L +++ + L  N +   + R  F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 423 RLNGSIPDWV----DGLSQLSHLILGHNNLEGEVSVQLCELNQLQL--LDLSNNNLH 473
           +++   P  +    + L +L  L L  N L+      L +L       L L NN L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 303
             +LDLS+N+L+    E       NL  L LS+N+L   + S  F  + NL++L L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVE--- 359
                    S   +LE L L NN  +  + R    ++ +LQ + +  N +    PVE   
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK 157

Query: 360 -FCQLDSLQILDISDNNISGSLPSCFHPLS---IKQVHLSKNMLH 400
              +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
           +  L  LDLS N L   +   +  +L  ++ L L +N++   +    F ++  ++ L LS
Sbjct: 87  VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 594 NNKLNGKIPHQ----LVELKTLEVFSVAYNNLS 622
            N+++ + P +      +L  L +  ++ N L 
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 45/215 (20%), Positives = 70/215 (32%), Gaps = 48/215 (22%)

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLSNNNLHG 474
            L  S  +L  ++P  +   S  + L L HNNL           L  L  L LS+N+L+ 
Sbjct: 22  ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 475 PIPPC-FDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
            I    F        L  S ++                    L   +  +F         
Sbjct: 79  -ISSEAFVPVPNLRYLDLSSNH--------------------LHTLDEFLFSDLQA---- 113

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSN---LK 585
                    L  L L  N  I  +      ++ ++Q L LS N ++        +   L 
Sbjct: 114 ---------LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
            +  LDLS+NKL       L +L       +  +N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 542 LDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLN 598
           LDLS N  +  +  +     LT + +L LSHN+L   I S  F  + ++  LDLS+N L+
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 599 GKIPHQLVELKTLEVFSVAYNNLS 622
                   +L+ LEV  +  N++ 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 18  LVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           L +L  L ++ N L   +       + +LR LD+SSN L  ++       L ++E L+L 
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 77  NNYFQIPISLEP-LFNY-SRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
           NN   I + ++   F   ++L+      N+I     E         +L  L LSSN
Sbjct: 121 NN--HI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 14/90 (15%)

Query: 540 SGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNK 596
           +   LSC  + + ++P  + + T    L+LSHNNL+  + +  T + L ++ SL LS+N 
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYT--ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 597 LNGKIP----HQLVELKTLEVFSVAYNNLS 622
           LN  I       +  L+ L+   ++ N+L 
Sbjct: 76  LN-FISSEAFVPVPNLRYLD---LSSNHLH 101

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 39/252 (15%), Positives = 91/252 (36%), Gaps = 21/252 (8%)

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 300
            +     +    +++T  + +        +  L+     +          L NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 301 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 360
            N+ + ++   L   + +  L L+ N L       +  L  ++ + + +  +    P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDL 419
             L +LQ+L +  N I+ ++       +++ + +       Q+   T   N S L TL  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKA 180

Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479
             N+++  I   +  L  L  + L +N +       L   + L ++ L+N  +       
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 480 FDNTTLHESYSN 491
            +N  +      
Sbjct: 237 NNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 51/290 (17%)

Query: 40  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99
             + +   +    + +T    +     L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 159
            ++N+I  ++    +L     ++  L LS N                     L ++    
Sbjct: 70  LKDNQIT-DLAPLKNLT----KITELELSGNP--------------------LKNVSA-- 102

Query: 160 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
                 +     ++TL L +  +      P+     L+ L +  N I    P+     L 
Sbjct: 103 ------IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
            L + N  ++ L         N+  L  L   +N ++ +I         NL  + L NN 
Sbjct: 155 YLSIGNAQVSDLTP-----LANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQ 206

Query: 280 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 329
           +     S   N +NL  + L       +     +       +   + + +
Sbjct: 207 ISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 48/282 (17%), Positives = 102/282 (36%), Gaps = 26/282 (9%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
              +L +  ++    +++  ++    A++  +  L      +T   +   + +L ++  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L +N       L PL N +++       N +K  ++    L      + TL L+S    
Sbjct: 69  ELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTLDLTSTQIT 120

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                  L    +L+ + L   ++    P   L   T L+ L + N  ++     P+ + 
Sbjct: 121 DVTP---LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLANL 172

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L  L   +N I    P+     L  +++ NN ++ +     S   N   L I+ L+N 
Sbjct: 173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-----SPLANTSNLFIVTLTNQ 227

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 295
            +T +   +     V       S   +     S N    +  
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 51/312 (16%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            L N   +    +     +    +    +  L       +  I   +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKD 72

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 409
           N +    P++   L  +  L++S N +  ++ +     SIK + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             S+L  L L  N++    P  + GL+ L +L +G+  +       L  L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N +   I P      L E +  +                       N          I+ 
Sbjct: 183 NKISD-ISPLASLPNLIEVHLKN-----------------------NQ---------ISD 209

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVE 588
           +      S L  + L+   +         NL      N+        I P+T S+     
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAPATISDNGTYA 266

Query: 589 SLDLSNNKLNGK 600
           S +L+ N  +  
Sbjct: 267 SPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 49/277 (17%)

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
              L     I    +++   +      LD +  L      ++ ++    +  ++  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 396 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV 454
            N    Q+       N + +  L+LS N L  ++   + GL  +  L L    +      
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--VT 123

Query: 455 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 514
            L  L+ LQ+L L  N +   I P    T L                             
Sbjct: 124 PLAGLSNLQVLYLDLNQITN-ISPLAGLTNL----------------------------- 153

Query: 515 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574
              +        ++ +     LS L+ L    NK I  I P + +L  +  ++L +N ++
Sbjct: 154 ---QYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS 208

Query: 575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
              P   +N  ++  + L+N  +  +       L   
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 50/289 (17%)

Query: 62  SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 121
            P   L +  ++    +   +        +   +   +A    +   I     L      
Sbjct: 13  FPDPALANAIKIAAGKS--NV-TDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN----N 64

Query: 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181
           L  L L  N                     ++ +          L+N TK+  L L  + 
Sbjct: 65  LIGLELKDN--------------------QITDLAP--------LKNLTKITELELSGNP 96

Query: 182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 241
           L       I   + ++ LD+++  I    P+     L  LY+  N +  +     S    
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAG 149

Query: 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301
           +  LQ L + N  ++   P  LA     L  L   +N +     S   +L NL  + L+ 
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 350
           N+     P  L+  S+L  + L N ++  +   +  NL     +  P+ 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 39/214 (18%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLS 468
             ++ + +    + +  ++      L  ++ L      +    +++ +  LN L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 528
           +N +   + P  + T + E   + +           ++        Q+ +  + T+  I 
Sbjct: 72  DNQITD-LAPLKNLTKITELELSGNP----------LKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
            +     LS L  L L  N+ I +I P +  LT +Q L++ +  ++   P   +NL  + 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 589 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           +L   +NK++  I   L  L  L    +  N +S
Sbjct: 177 TLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 41/190 (21%)

Query: 433 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 492
             L+    +  G +N+   V+    +L+ +  L      +                    
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT------------------- 54

Query: 493 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 552
                      +IEG Q      N    E     I  +   K L+ ++ L+LS N  + +
Sbjct: 55  -----------TIEGVQYL---NNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKN 99

Query: 553 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
           +   I  L  I+TL+L+   +T   P   + L +++ L L  N++    P  L  L  L+
Sbjct: 100 VSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154

Query: 613 VFSVAYNNLS 622
             S+    +S
Sbjct: 155 YLSIGNAQVS 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 33/235 (14%)

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVGCVNLQFLALSNNNLQ 281
           N ++   DG + S   N      +D S+  LT     IP        + + L L +N L 
Sbjct: 1   NEALCKKDGGVCSCNNNKN---SVDCSSKKLTAIPSNIP-------ADTKKLDLQSNKLS 50

Query: 282 GHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRW 335
             L S+ F  LT L+ L L  N+      Q+L      +  +LE L++ +N L       
Sbjct: 51  -SLPSKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQALPIGV 104

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQV 392
              L  L  + +  N L+  +P   F  L  L  L +  N +  SLP   F  L S+K++
Sbjct: 105 FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 446
            L  N L  ++  G F   + L TL L  N+L   +P+   D L +L  L L  N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRG 406
           +N L       F +L  L++L ++DN +  +LP+  F  L  ++ + ++ N L   L  G
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIG 103

Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQL 464
            F    +L  L L  N+L  S+P  V D L++L++L LG+N L+  +   + + L  L+ 
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161

Query: 465 LDLSNNNLHGPIPPCFDNTT 484
           L L NN L       FD  T
Sbjct: 162 LRLYNNQLKRVPEGAFDKLT 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 52/221 (23%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           P   K++ L  N L   L    F   + L  L L+ N+L  ++P  +   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 445 HNNLEGEVSVQ---LCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYSN-SSSP 495
            N L+   ++      +L  L  L L  N L   +PP  FD+    T L   Y+   S P
Sbjct: 94  DNKLQ---ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 496 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP 555
              F+                                   L+ L  L L  N+L   +P 
Sbjct: 150 KGVFD----------------------------------KLTSLKELRLYNNQL-KRVPE 174

Query: 556 QI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
                LT ++TL L +N L       F +L+ ++ L L  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 70/224 (31%)

Query: 412 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSN 469
           +    LDL  N+L+ S+P      L++L  L L  N L+  +   +  EL  L+ L +  
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV-T 93

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           +N    +P                                         +F+        
Sbjct: 94  DNKLQALPI---------------------------------------GVFDQLVN---- 110

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHV 587
                    L+ L L  N+ +  +PP++  +LT++  L+L +N L  S+P   F  L  +
Sbjct: 111 ---------LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159

Query: 588 ESLDLSNNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 627
           + L L NN+L  ++P     +L ELKTL++     NN    +PE
Sbjct: 160 KELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 17  SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
            LV+L EL +  N L+ SLP     ++T L  L +  N+L  S+       LTS++EL L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164

Query: 76  SNNYFQIPISLEPLFNY-SRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 130
            NN  Q+    E  F+  + LK    +NN++K              +L  L L  N
Sbjct: 165 YNN--QLKRVPEGAFDKLTELKTLKLDNNQLK---RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 19/121 (15%)

Query: 17  SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
            L  L+ LY+  N L+ +LP      + +L  L V+ N+L  ++       L ++ EL L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 76  SNNYFQIPISLEP-LF-NYSRLKIFNAENNEIKAEITESHSLIAPKF----QLNTLSLSS 129
             N  +   SL P +F + ++L   +   NE++       SL    F     L  L L +
Sbjct: 117 DRNQLK---SLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYN 166

Query: 130 N 130
           N
Sbjct: 167 N 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 54/222 (24%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LFNY-SRLKIFNA 100
              + LD+ SN+L+ S+ S     LT +  L L++N  Q   +L   +F     L+    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 101 ENNEIKAEITESHSLIAPKF----QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 156
            +N+++       +L    F     L  L L  N                     L  + 
Sbjct: 93  TDNKLQ-------ALPIGVFDQLVNLAELRLDRN--------------------QLKSL- 124

Query: 157 MNGEFPNWLLENNTKLETLFLVNDSL----AGPF-RLPIHSHKRLRQLDVSNNNIRGHIP 211
                P  + ++ TKL  L L  + L     G F +L       L++L + NN ++  +P
Sbjct: 125 -----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-----SLKELRLYNNQLK-RVP 173

Query: 212 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
               D L  L       N L      +F +++ L++L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 17/237 (7%)

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 296
            +   +  +  +  +N+ +   + + +     N+  L L+ N L         NL NL W
Sbjct: 40  VTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNGNKLTD--IKPLANLKNLGW 94

Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
           L L+ N+ V ++  SL     L+ L L +N +       L +L +L+ + + NN +    
Sbjct: 95  LFLDENK-VKDL-SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDIT 150

Query: 357 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 416
            +   +L  L  L + DN IS  +        ++ ++LSKN +             +L  
Sbjct: 151 VLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDV 204

Query: 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
           L+L          +    L   + +     +L       + +    +  ++  +   
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 75/315 (23%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
              +     +  +    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            L+ N  ++   ++PL N   L     + N++K +++    L     +L +LSL  N   
Sbjct: 74  FLNGN--KL-TDIKPLANLKNLGWLFLDENKVK-DLSSLKDLK----KLKSLSLEHNG-- 123

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                             +S I          L +  +LE+L+L N+ +       +   
Sbjct: 124 ------------------ISDING--------LVHLPQLESLYLGNNKITDI--TVLSRL 155

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            +L  L + +N I                            I      +  LQ L LS N
Sbjct: 156 TKLDTLSLEDNQIS--------------------------DI-VPLAGLTKLQNLYLSKN 188

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
           H++ ++      G  NL  L L +        +   NL     ++      V   P+ +S
Sbjct: 189 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 314 KCSSLEGLYLNNNSL 328
                E   +  +  
Sbjct: 244 DDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 49/288 (17%)

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
                      +    +   +     +L+S+  +  ++++I  S+    +  ++ ++ L+
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLN 76

Query: 396 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV 454
            N    +L       N  +L  L L  N++   +   +  L +L  L L HN +  +++ 
Sbjct: 77  GN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING 129

Query: 455 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 514
            L  L QL+ L L NN +   I      T L                  S+E +Q     
Sbjct: 130 -LVHLPQLESLYLGNNKITD-ITVLSRLTKLDT---------------LSLEDNQ----- 167

Query: 515 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574
                       I+ I     L+ L  L LS N  I  +   +  L  +  L L      
Sbjct: 168 ------------ISDIVPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECL 213

Query: 575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
               +  SNL    ++  ++  L    P  + +    E  +V ++   
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 48/269 (17%), Positives = 103/269 (38%), Gaps = 24/269 (8%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
             V  +     L  + ++   ++D++ S+   +  + ++  L ++ N+LT      PL +
Sbjct: 34  KSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT---DIKPLAN 88

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 126
           L ++  L L  N  ++   L  L +  +LK  + E+N I  +I     L     QL +L 
Sbjct: 89  LKNLGWLFLDEN--KV-KDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLP----QLESLY 140

Query: 127 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 186
           L +N          L     L+ + L   +++   P   L   TKL+ L+L  + ++   
Sbjct: 141 LGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL- 193

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDG-SIPSSFGNMK 243
              +   K L  L++ +            +  V  ++   + S+   +  S    +    
Sbjct: 194 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

Query: 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQF 272
               L    N ++    + + +G    +F
Sbjct: 253 VKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 16/212 (7%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
           ++    +  LFL  + L      P+ + K L  L +  N ++    +K    L SL + +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 285
           N ++ ++G       ++  L+ L L NN +T      L+     L  L+L +N +     
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--I 171

Query: 286 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
                LT LQ L L  N  + ++ ++L+   +L+ L L +   L K      NL     +
Sbjct: 172 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 346 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
              +  L  P  +        +  ++  +   
Sbjct: 230 KNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 23/229 (10%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLS 468
             +  +  +L    +  ++    + L+ +  +I  +++++   SVQ +  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 528
            N L   I P  +   L   + + +           ++      + +  +        I+
Sbjct: 77  GNKLTD-IKPLANLKNLGWLFLDENK----------VKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
            I     L  L  L L  NK I  I   +  LT++ TL+L  N ++  I    + L  ++
Sbjct: 126 DINGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ 181

Query: 589 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE 637
           +L LS N ++      L  LK L+V  +       +    ++     N 
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 4e-13
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 15/255 (5%)

Query: 369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428
               ++ +           S  Q          +           L   +LS  +    +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488
              ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548
               ++  +     F +E     +E  +  +     K++  +   + L L++ LDLS N+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVE 607
           L   +PP +  L  ++ L  S N L  ++    +NL  ++ L L NN+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 608 LKTLEVFSVAYNNLS 622
              L + ++  N+L 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
             +     L  L+ +  L ++ N LR +LP  +A +  L +L  S N L    +   + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVAN 506

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA 117
           L  ++EL+L NN  Q   +++PL +  RL + N + N +  E      L  
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 5e-07
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 186 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 245
             +    +  +R L +++ ++     +   + L  +   + S N L  ++P +   ++ L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 302
           ++L  S+N L   +   +A     LQ L L NN LQ     +   +   L  L L+GN
Sbjct: 489 EVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 59/300 (19%)

Query: 121 QLNTLSLSSN-YGDGFIFP--KFLYHQHDLEYVDLSHIKMNGEFPNWL---------LEN 168
            +  + LS N  G        + +  + DLE  + S I                   L  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 169 NTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 224
             KL T+ L +++       P    +  H  L  L + NN +      KI   L  L V 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLALSNNNLQ 281
             +             N   L+ +    N L     +  A        L  + +  N ++
Sbjct: 153 KKA------------KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200

Query: 282 --------GHLFSRNFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSL- 328
                       +       L+ L L+ N F       +  +L    +L  L LN+  L 
Sbjct: 201 PEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 329 ------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-----LDSLQILDISDNNIS 377
                 +      L N+  LQ + +  N +E              +  L  L+++ N  S
Sbjct: 258 ARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 48/272 (17%), Positives = 83/272 (30%), Gaps = 55/272 (20%)

Query: 241 NMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQFLALSNNNLQ----------GHLFS 286
               ++ + LS N +  E    + E++A    +L+    S+                L  
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 287 RNFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342
                  L  ++L  N F       +   LSK + LE LYL+NN L  +    +     L
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--L 146

Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI--------SGSLPSCFHPLSIKQVHL 394
           Q + +       P          L+ +    N +        + +  S      +  V +
Sbjct: 147 QELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKM 194

Query: 395 SKNMLH----GQLKRGTFFNCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHN 446
            +N +       L       C  L  LDL  N        ++   +     L  L L   
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 447 NLEGEVSVQLCEL------NQLQLLDLSNNNL 472
            L    +  + +         LQ L L  N +
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 35/300 (11%), Positives = 74/300 (24%), Gaps = 85/300 (28%)

Query: 365 SLQILDISDNNISGS-----LPSCFHPLSIKQVHLSKNMLHGQ--------LKRGTFFNC 411
           S++   +  + I+               S+K++ LS N +  +        +      + 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-----SK 59

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGL----------SQLSHLILGHNNLEGEVSVQLCEL-- 459
             L   + S         +  + L           +L  + L  N         L +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 460 --NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 517
               L+ L L NN L                                 +           
Sbjct: 120 KHTPLEHLYLHNNGL-------------------------------GPQAGAKIAR---- 144

Query: 518 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNL 573
                  + +A   + K    L  +    N+L    +        +   + T+ +  N +
Sbjct: 145 -----ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 574 T-----GSIPSTFSNLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLSGE 624
                   +    +  + ++ LDL +N         +   L     L    +    LS  
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 54/392 (13%), Positives = 105/392 (26%), Gaps = 121/392 (30%)

Query: 245 LQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301
           ++   L  + +T E  + +    +   +++ + LS N +                    G
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--------------------G 45

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
                 + ++++    LE    ++             L  L   ++    L         
Sbjct: 46  TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-------- 97

Query: 362 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
                  + +SDN      P+   PL         + L            + L  L L  
Sbjct: 98  ------TVRLSDNAFG---PTAQEPLI--------DFLS---------KHTPLEHLYLHN 131

Query: 422 NRL-------------NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468
           N L               ++         L  +I G N LE     +  +    Q    S
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT--FQ----S 185

Query: 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE---KQNHEIFE---- 521
           +  L           T+    +               EG +  L        E+      
Sbjct: 186 HRLL----------HTVKMVQNG-----------IRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 522 ---FTTKNIAYIYQG-KVLSLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSH 570
              FT    + +    K    L  L L+   L       +     ++ N+  +QTL L +
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQY 283

Query: 571 NNLTGS-----IPSTFSNLKHVESLDLSNNKL 597
           N +               +  +  L+L+ N+ 
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 46/306 (15%), Positives = 85/306 (27%), Gaps = 85/306 (27%)

Query: 12  SQGLCSLVHLQELYIASNDLR----------GSLPWCMANMTSLRILDVSSNQLTGSISS 61
           S+ + S   L+    +                 L   +     L  + +S N   G  + 
Sbjct: 53  SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQ 111

Query: 62  SPLVHL----TSIEELMLSNNYF------------QIPISLEPLFNYSRLKIFNAENNEI 105
            PL+      T +E L L NN              Q     +   N   L+      N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 106 KAEITESHSLIAPKFQLNT----LSLSSN----YGDGFIFPKFLYHQHDLEYVDLSHIKM 157
           +    +     A  FQ +     + +  N     G   +  + L +  +L+ +DL     
Sbjct: 172 ENGSMKE---WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD--- 225

Query: 158 NGEFPNWL-----------LENNTKLETLFLVNDSL--AGPFR----LPIHSHKRLRQLD 200
                N             L++   L  L L +  L   G            +  L+ L 
Sbjct: 226 -----NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280

Query: 201 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT--GE 258
           +  N I       +  V+                       M  L  L+L+ N  +   +
Sbjct: 281 LQYNEIELDAVRTLKTVIDE--------------------KMPDLLFLELNGNRFSEEDD 320

Query: 259 IPEHLA 264
           + + + 
Sbjct: 321 VVDEIR 326

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            L N     L     V ++  S  + S ++    +N+++  +    +   T L+ + + +
Sbjct: 17  GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 409
           N +    P++   L  L+ L ++ N +     +      + ++ L  N L       +  
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDNNELR---DTDSLI 125

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
           +  +L  L +  N+L  SI   +  LS+L  L L  N +       L  L ++  +DL+ 
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTG 181

Query: 470 NNL 472
              
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 14  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
               L +  +  +    +   +      ++ ++  +  ++ +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 74  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 133
            LS+N  QI   L PL + ++L+  +   N +K  +    S       L+ L L +N   
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSA-----CLSRLFLDNNE-- 117

Query: 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 193
                  L H  +LE + + + K+        L   +KLE L L  + +       +   
Sbjct: 118 -LRDTDSLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI--PSSFGNMKFLQILDLS 251
           K++  +D++                P LY+ N   +  DG    P    N        + 
Sbjct: 172 KKVNWIDLTGQKCVNEPV----KYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVL 226

Query: 252 NNHLT 256
                
Sbjct: 227 WELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 36/256 (14%), Positives = 80/256 (31%), Gaps = 47/256 (18%)

Query: 40  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99
             + +    ++    +T          L+ ++     N+  Q   SL  +  ++ LK  +
Sbjct: 16  PGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 159
             +N+I  +++    L     +L  LS++ N                    +L+ I    
Sbjct: 70  LSHNQIS-DLSPLKDLT----KLEELSVNRN-----------------RLKNLNGIP--- 104

Query: 160 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
                    +  L  LFL N+ L       +   K L  L + NN ++  + +     L 
Sbjct: 105 ---------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE 153

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
            L +  N +             +K +  +DL+      E  ++     +           
Sbjct: 154 VLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 280 LQGHLFSRNFNLTNLQ 295
           +  +  S   +  +  
Sbjct: 209 ISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 17/140 (12%)

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
              L       +    +   +  +  +L  +Q  +  ++NI  SL       ++K++HLS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 396 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLS--QLSHLILGHNNLEGEV 452
            N    Q+   +   + + L  L ++ NRL       ++G+    LS L L +N L  + 
Sbjct: 72  HN----QISDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELR-DT 121

Query: 453 SVQLCELNQLQLLDLSNNNL 472
              L  L  L++L + NN L
Sbjct: 122 DS-LIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 45/270 (16%), Positives = 82/270 (30%), Gaps = 49/270 (18%)

Query: 62  SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 121
            P   L +  +  L          L      S ++ FN +N+ I+  +            
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181
           L  L LS N                     +S +          L++ TKLE L +  + 
Sbjct: 65  LKELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNR 96

Query: 182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 241
           L     L       L +L + NN +R    +     L  L + NN + ++        G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM-----LGF 148

Query: 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301
           +  L++LDL  N +T             + ++ L+              L     ++   
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGK 331
            R++   P  +S   S     +     +  
Sbjct: 206 GRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 42/202 (20%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             S +   +   + +  S+   +   + L  L L HN +  ++S  L +L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNR 94

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N L                               ++ G    +              +  
Sbjct: 95  NRLK------------------------------NLNG----IPSACLSRLFLDNNELRD 120

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 589
                 L  L  L +  NK +  I   +G L++++ L+L  N +T +     + LK V  
Sbjct: 121 TDSLIHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNW 176

Query: 590 LDLSNNKLNGKIPHQLVELKTL 611
           +DL+  K   +      EL   
Sbjct: 177 IDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/195 (15%), Positives = 72/195 (36%), Gaps = 32/195 (16%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTG--------- 57
           + +    G+    +L+EL+++ N +    P  + ++T L  L V+ N+L           
Sbjct: 51  SNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACL 108

Query: 58  --------SISS-SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 108
                    +     L+HL ++E L + NN  +   S+  L   S+L++ +   NEI   
Sbjct: 109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEI--- 162

Query: 109 ITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 168
              +   +    ++N + L+          + + +Q +L   +            + + N
Sbjct: 163 --TNTGGLTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216

Query: 169 NTKLETLFLVNDSLA 183
                   ++ +   
Sbjct: 217 GGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 20/191 (10%)

Query: 432 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 491
             GL+      LG  ++   VS    EL+ +Q  +  N+N+   +      T L E + +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLS 71

Query: 492 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 551
            +           I       +    E        +  +       L   L L  N+ + 
Sbjct: 72  HN----------QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR-LFLDNNE-LR 119

Query: 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
                + +L  ++ L++ +N L  SI      L  +E LDL  N++       L  LK +
Sbjct: 120 DTDS-LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174

Query: 612 EVFSVAYNNLS 622
               +      
Sbjct: 175 NWIDLTGQKCV 185

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 364
           EIP +L    ++  + L  N++   IP        +L+ I + NN +   +  + F  L 
Sbjct: 25  EIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLR 80

Query: 365 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           SL  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N
Sbjct: 81  SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN 138

Query: 423 RLNGSIPDWVDGLSQLSHLILGHN 446
           +L          L  +  + L  N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQI 247
             +K+LR++D+SNN I   +       L SL    ++ N +  L     S F  +  LQ+
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELP---KSLFEGLFSLQL 108

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGN 302
           L L+ N +   +         NL  L+L +N LQ         L  +Q + L  N
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
            ++ +  N I+  IP         L    + NN ++ L    P +F  ++ L  L L  N
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLYGN 90

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGEIPQ 310
            +T E+P+ L  G  +LQ L L+ N +       F    +L NL  L L  N+       
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKG 146

Query: 311 SLSKCSSLEGLYLNNN 326
           + S   +++ ++L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           P +I ++ L +N +   +  G F     L  +DLS N+++  +      GL  L+ L+L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYSN-SSSPDEQ 498
            N +          L  LQLL L+ N ++  +    F +      L    +   +     
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 499 FEIFFSIE 506
           F    +I+
Sbjct: 148 FSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
           L  L+ L L  NK+   +P  +   L  +Q L L+ N +   +    F +L ++  L L 
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 594 NNKLNGKIPH----QLVELKTLEVFS 615
           +NKL   I       L  ++T+ +  
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 18  LVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           L  L  L +  N +   LP  +   + SL++L +++N++   +       L ++  L L 
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 77  NNYFQ-IPI-SLEPLFNYSRLKIFN 99
           +N  Q I   +  PL     + +  
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 542 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL-- 597
           + L  N  I  IPP       +++ ++LS+N ++  +    F  L+ + SL L  NK+  
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 598 -NGKIPHQLVELKTL 611
               +   L  L+ L
Sbjct: 95  LPKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 594
           L  L  L L+ NK+   +      +L  +  L+L  N L      TFS L+ ++++ L+ 
Sbjct: 103 LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 595 N 595
           N
Sbjct: 162 N 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSV 616
             I  + L  N +    P  FS  K +  +DLSNN+++ ++       L  L +L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 617 AYNNLS 622
             N ++
Sbjct: 88  YGNKIT 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
            +L ++NN         I   LP L   N S N +      +F     +  + L++N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313
             +   +  G  +L+ L L +N +       F     L++++ L L  N+     P +  
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFD 150

Query: 314 KCSSLEGLYLNNN------SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
              SL  L L  N       L      WLG   R + I+  N   + P  ++   +  + 
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLA-----WLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVA 205

Query: 368 ILDI 371
           I D 
Sbjct: 206 IQDF 209

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 316 SSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
                L LNNN             L +L+ I   NN +       F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 375 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
            +  ++    F  L S+K + L  N +   +   +F   SS+  L L  N++  ++    
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 433 -DGLSQLSHLILGHN 446
            D L  LS L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRF 304
             L L+NN  T      +      L+ +  SNN +   +    F   + +  + L  NR 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
                +      SL+ L L +N +          L+ ++ + + +N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 365 SLQILDISDN 374
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 365 SLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
               L +++N  +    +  F  L  +++++ S N +   ++ G F   S +  + L+ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 423 RLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CF 480
           RL  ++   +  GL  L  L+L  N +    +     L+ ++LL L +N +   + P  F
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 481 DN 482
           D 
Sbjct: 150 DT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGE 307
           D SN  L  +IPEH+         L L+NN       +  F  L  L+ +    N+    
Sbjct: 17  DCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSL 366
              +    S +  + L +N L     +    L  L+ +++ +N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKN 397
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           P    ++ L+ N        G F     L  ++ S N++   I +   +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTT 484
            N LE         L  L+ L L +N +   +    F   +
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLS 129

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
            S ++ + L+ N+L   +  ++   L  ++TL L  N +T  + + +F  L  V  L L 
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137

Query: 594 NNKLNGKIPH----QLVELKTLEVFS 615
           +N++   +       L  L TL + +
Sbjct: 138 DNQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 17  SLVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 75
               + E+ + SN L  ++   M   + SL+ L + SN++T  + +   + L+S+  L L
Sbjct: 79  GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136

Query: 76  SNN 78
            +N
Sbjct: 137 YDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 542 LDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
           L L+ N+    +        L +++ +N S+N +T      F     V  + L++N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 600 KIP----HQLVELKTLEVFSVAYNNLS 622
            +       L  LKTL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLS 593
           L  L  L L  N++   +       L+ ++ L+L  N +T ++    F  L  + +L+L 
Sbjct: 104 LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLL 161

Query: 594 NN 595
            N
Sbjct: 162 AN 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 365
           +    L    +L  LY+ N   L  +    L  L  L+ + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 366 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 400
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 594
              L+ L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 595 NKLNGKIPHQLVELKTLEVFSVAYNNL 621
           N L   +  + V+  +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
           + L +L + N     H+                               +  L+ L +  +
Sbjct: 31  ENLTELYIENQQHLQHLE------------------------LRDLRGLGELRNLTIVKS 66

Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305
            L   +          L  L LS N L+  L  +     +LQ L L GN   
Sbjct: 67  GLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFN 290
                    + L  L + N      +      G   L+ L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
              L  L L  N     +     +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 3/107 (2%)

Query: 543 DLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGK 600
            L C           +     +  L + +      +       L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 601 IPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
            P        L   ++++N L   +     Q  +  E    GN   C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 13  QGLCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 71
             L    +L ELYI +      L    +  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 72  ELMLSNNYFQIPISLEP-LFNYSRLKIFNAENNEI 105
            L LS N  +   SL         L+      N +
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 412 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQ---LCELNQLQLLDL 467
            +L  L +   +    +      GL +L +L +  + L     V         +L  L+L
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSRLNL 87

Query: 468 SNNNLHGPIPPCFDNTTLHE 487
           S N L           +L E
Sbjct: 88  SFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 26/119 (21%)

Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
                   ++L  L I +      L                                 L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-----------------------RDLRGLGELR 59

Query: 416 TLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473
            L +  + L   +         +LS L L  N LE  +S +  +   LQ L LS N LH
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 9   VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 68
            +  + L  L  L+ L I  + LR   P        L  L++S N L  S+S   +  L 
Sbjct: 46  HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL- 103

Query: 69  SIEELMLSNNYFQ 81
           S++EL+LS N   
Sbjct: 104 SLQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVG 266
           +P  I      LY+ +N +  L+   P  F ++  L+ L L +N L      + + L   
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSL--- 87

Query: 267 CVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
              L  L L  N L   L S  F+ L +L+ L +  N+   E+P+ + + + L  L L+ 
Sbjct: 88  -TQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQ 144

Query: 326 NSLLGKIPRWLGNLTRLQYIIMPNN 350
           N L          L+ L +  +  N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
           + LYL++N +    P    +L  L+ + + +N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 379 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 438
            LPS                         F     L  L +  N+L   +P  ++ L+ L
Sbjct: 102 VLPS-----------------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137

Query: 439 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470
           +HL L  N L+         L+ L    L  N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 367 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 426 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
             +P  V D L  L  L +  N L  E+   +  L  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 53/276 (19%), Positives = 97/276 (35%), Gaps = 49/276 (17%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVN----LQFLALSNNNLQ---GHLFSR--NFNLTNLQ 295
           +  LDLS N+L       L     N    +  L LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 296 WLQLEGNRF----VGEIPQSLSKC-SSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYI 345
            L L GN        E+ ++L+    ++  L L  N    K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 346 IMPNNHLEGPIPVEFCQL-----DSLQILDISDNNI--------SGSLPSCFHPLSIKQV 392
            +  N L      E  Q+      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 393 HLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILG 444
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 445 HNNLEG-------EVSVQLCELNQLQLLDLSNNNLH 473
           ++ ++         +      + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 36/314 (11%), Positives = 97/314 (30%), Gaps = 48/314 (15%)

Query: 12  SQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLT----GSISSS 62
            +       +  L ++ N+L    ++    A      S+  L++S N L       +   
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 63  PLVHLTSIEELMLSNNYFQ----IPISLEPLFNYSRLKIFNAENNEIKAEITE--SHSLI 116
                 ++  L LS N+        +          + + +   N+  ++ +     +  
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 117 APKFQLNTLSLSSNY----GDGFIFPKFLYHQHDLEYVDLS--HIKMNG--EFPNWLLEN 168
                + +L+L  N         +         ++  ++L   ++      E   +L   
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 169 NTKLETLFLVN--------DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP- 219
              + +L L            LA  F         +  L++  N + G     +  +   
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 220 -----SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGE----IPEHLAVG 266
                ++Y+  + +  +      ++ ++F N++ + ++D +   +       I   +   
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 267 CVNLQFLALSNNNL 280
                  +L N  L
Sbjct: 312 SGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 53/367 (14%), Positives = 109/367 (29%), Gaps = 88/367 (23%)

Query: 165 LLENNTKLETLFLVN--------DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 216
                  + +L L            L   F    ++   +  L++S N++      ++  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 217 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQF 272
           +L +      +                 +  L+LS N L+ +    + + LA     +  
Sbjct: 74  ILAA----IPAN----------------VTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113

Query: 273 LALSNNNLQG----HLFS--RNFNLTNLQWLQLEGNRF----VGEIPQSLSKC-SSLEGL 321
           L L  N+              N    ++  L L GN        E+ Q L+   +++  L
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 322 YLNNNSL-------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-----DSLQIL 369
            L  N+L       L K          +  + +  N L      E   +     + +  L
Sbjct: 173 NLRGNNLASKNCAELAKFLA--SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 370 DISDNNISGS----LPSCFHPL-SIKQVHLSKNMLHGQLKRG------TFFNCSSLVTLD 418
           ++  N + G     L      L  ++ V+L  +++    K         F N   ++ +D
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 419 LSYNRLNGSIPDWVDGLSQ--------LSHLILGHNNLEGEVSVQLCELNQ-----LQLL 465
            +   ++   P     +S              L +  L      Q    +      L+  
Sbjct: 291 KNGKEIH---PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRES 347

Query: 466 DLSNNNL 472
             +   L
Sbjct: 348 IQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 40/267 (14%), Positives = 100/267 (37%), Gaps = 56/267 (20%)

Query: 365 SLQILDISDNNISGS--------LPSCFHPLSIKQVHLSKNMLHGQ----LKRGTFFNCS 412
           S+  L++S N++           L +   P ++  ++LS N L  +    L +       
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 413 SLVTLDLSYNRL-NGSIPDWVDGL----SQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467
           ++  LDL +N   + S  ++        + ++ L L  N+L  + S +L ++       L
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-------L 162

Query: 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK----QNHEIFEFT 523
           +    +          +L+    N+ +     E+   +      +       N       
Sbjct: 163 AAIPAN--------VNSLNLRG-NNLASKNCAELAKFLASIPASVTSLDLSANL----LG 209

Query: 524 TKNIAYIYQG--KVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTG-- 575
            K+ A +      + + +  L+L  N L    + ++     +L  +QT+ L ++ +    
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 576 -----SIPSTFSNLKHVESLDLSNNKL 597
                ++ + F N++ +  +D +  ++
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEI 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 48/404 (11%), Positives = 116/404 (28%), Gaps = 53/404 (13%)

Query: 238 SFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNL--QGHLFSRNF--NLT 292
           +      L+ L L   +  T +    +   C  ++ L +  ++   +   +      + T
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 293 NLQWLQLEGNRFVGEIPQSL----SKCSSLEGLYLNNNSL-----LGKIPRWLGNLTRLQ 343
           +L+ L      F    P+ L      C SL  + + +  +       K    L       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 403
                    +    V   +L  L +  +  N +    P       I+++ L   +L  + 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ---IRKLDLLYALLETED 309

Query: 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN--- 460
                  C +L  L+      +  +        QL  L +     E  +  +   ++   
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 461 ---------QLQLLDLSNNNL----------HGPIPPCFDNTTLHESYSNSSSPDEQFEI 501
                    +L+ + +  +++          +      F    L      +  P +    
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD--NG 427

Query: 502 FFSIEGHQGFLEKQNHEI--FEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPP 555
             S+      L +    +     T   ++YI  G+    +  + L         +     
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVGESDEGLMEF-- 483

Query: 556 QIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLN 598
                  +Q L +     +  +I +  + L  +  L +   + +
Sbjct: 484 -SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 56/392 (14%), Positives = 120/392 (30%), Gaps = 50/392 (12%)

Query: 121 QLNTLSLSSNYG---DGFIFPKFLYHQHDLEYVDLSHIKMNG---EFPNWLLENNTKLET 174
           ++ TL +  +     DG    +   H   LE ++    +      +    +  N   L +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 175 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL-DG 233
           + + +  +         +   L +    + N    +P K  +++    +    ++ +   
Sbjct: 225 VKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
            +P  F     ++ LDL    L  E    L   C NL+ L   N      L         
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 294 LQWLQLEGNRFVGEIPQSLSK------------CSSLEGLYLNNNSL----LGKIPRWLG 337
           L+ L++E       +                  C  LE + +  + +    L  I  +L 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403

Query: 338 NLTRLQYIIMPNNH------LEGPIPVEFCQLDSLQILD-------ISDNNIS--GSLPS 382
           NL   + +++          L+  +         L+          ++D  +S  G    
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463

Query: 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL-NGSIPDWVDGLSQLSHL 441
               + +  V  S   L    +      C +L  L++        +I   V  L  L +L
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSR-----GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 442 ILGHNNL----EGEVSVQLCELNQLQLLDLSN 469
            +         +  + +     N ++L+    
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWN-IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 51/409 (12%), Positives = 113/409 (27%), Gaps = 88/409 (21%)

Query: 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-----------EHLAVGCVNLQF 272
                 A    +   F N++ L++       +   IP             ++     L+ 
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 273 LALSNNNL--QGHLFSRNFNLTNLQWLQLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSL 328
           +      +              +L+ L+L+         +   ++ C  ++ L +  +S 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
             K  +WL  L +                       SL++L+      +   P     ++
Sbjct: 177 SEKDGKWLHELAQH--------------------NTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL--NGSIPDWVDGLSQLSHLILGHN 446
                                NC SLV++ +    +            L +     L  +
Sbjct: 217 R--------------------NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 447 NLEGEVSVQLCELNQLQLLDLSN---NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 503
               E  + L    +L  L LS    N +    P       L   Y+   + D       
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-----HC 311

Query: 504 SIEGHQGFLEKQN--HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 561
           ++      LE     + I     + +  +   +    L  L +        +  + G ++
Sbjct: 312 TLIQKCPNLEVLETRNVI---GDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 562 ------------RIQTLNLSHNNLT----GSIPSTFSNLKHVESLDLSN 594
                        ++ + +  +++T     SI +   NL     + L  
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
            LY+  N        +P    N K L ++DLSNN ++  +          L  L LS N 
Sbjct: 35  ELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89

Query: 280 LQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 326
           L+      F     L +L+ L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           P  + +++L  N     L      N   L  +DLS NR++ ++ +     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNL 472
           +N L          L  L+LL L  N++
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 27/132 (20%)

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
            ++  L L+GN+F   +P+ LS    L  + L+NN +     +   N+T+L  +I+  N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 352 LEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 410
           L   IP   F  L SL++L +  N+IS  +P                        G F +
Sbjct: 90  LRC-IPPRTFDGLKSLRLLSLHGNDIS-VVP-----------------------EGAFND 124

Query: 411 CSSLVTLDLSYN 422
            S+L  L +  N
Sbjct: 125 LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LS N+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 602 PH----QLVELKTLEVFSVAYNNLSGEIPE 627
           P      L  L+ L +     N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHG---NDIS-VVPE 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 269
           +P  I      L + +  +  L     ++F  +  L  L+L  N L   +   +      
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLS---DATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 270 LQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYL 323
           L  L L+NN L   L    F +LT L  L L GN+      +SL      + + L+ L L
Sbjct: 85  LGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRL 138

Query: 324 NNNSLLGKIPRWLG---NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
           N N  L  IP   G    LT LQ + +  N L+      F +L  LQ + +  N
Sbjct: 139 NTNQ-LQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 34/169 (20%)

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
           E L L +  L          LT+L ++ +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 379 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQ 437
           SLP                        G F + + L  L L  N+L  S+P  V D L++
Sbjct: 97  SLPL-----------------------GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 438 LSHLILGHNNL----EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
           L  L L  N L     G       +L  LQ L LS N L       FD 
Sbjct: 133 LKELRLNTNQLQSIPAGAFD----KLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 52/191 (27%), Positives = 75/191 (39%), Gaps = 47/191 (24%)

Query: 268 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLY 322
            + + L L +  L     +    LT L WL L+ N+      Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
           L NN  L  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQ-LASLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 383 -CFHPL-SIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLS 436
             F  L  +K++ L+ N    QL+    G F   ++L TL LS N+L  S+P    D L 
Sbjct: 125 GVFDRLTKLKELRLNTN----QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179

Query: 437 QLSHLILGHNN 447
           +L  + L   N
Sbjct: 180 KLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 35/182 (19%)

Query: 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476
           LDL    L         GL++L+ L L +N L+   +    +L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 477 PPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 535
              FD+ T L + Y   +    Q +   S+             +F+  TK          
Sbjct: 100 LGVFDHLTQLDKLYLGGN----QLK---SLP----------SGVFDRLTK---------- 132

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLS 593
              L  L L+ N+L   IP      LT +QTL+LS N L  S+P   F  L  ++++ L 
Sbjct: 133 ---LKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187

Query: 594 NN 595
            N
Sbjct: 188 GN 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 86/555 (15%), Positives = 153/555 (27%), Gaps = 185/555 (33%)

Query: 85  SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF--QLNTLSLSSNYGDGFIFPKF-- 140
            L    NY  L       + IK E     S++   +  Q + L     Y D  +F K+  
Sbjct: 86  VLRI--NYKFLM------SPIKTE-QRQPSMMTRMYIEQRDRL-----YNDNQVFAKYNV 131

Query: 141 ------------LYHQHDLEYVDLSHIKMNG------------------EFPN---WL-- 165
                       L      + V +    + G                  +      WL  
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLI-D-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 166 ---------LENNTKLETLFLVND-------SLAGPFRLPIHSHK-RLRQL--------- 199
                    LE    L+ L    D         +   +L IHS +  LR+L         
Sbjct: 190 KNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 200 -----DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL----DGSIPSSFGNMKFLQI-LD 249
                +V N                    FN S   L       +           I LD
Sbjct: 247 LLVLLNVQNAKA--------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 250 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS--------RNFNLTNLQWLQLEG 301
             +  LT +  + L +  ++ +   L    L  +           R+   T   W  +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 302 NRFVGEIPQSLSKCSSLE--GLY-----LNNNSLLGKIPR------WLGNLTRLQYIIMP 348
           ++    I  SL+     E   ++        ++    IP       W   +     +++ 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVV- 408

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
                           SL  ++      + S+PS +  L +K    ++  LH  +     
Sbjct: 409 ----------NKLHKYSL--VEKQPKESTISIPSIY--LELKVKLENEYALHRSI----- 449

Query: 409 FNCSSLVTLDLSYNRL-----NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ 463
                   +D  YN       +  IP ++D     SH  +GH+    E   ++     + 
Sbjct: 450 --------VD-HYNIPKTFDSDDLIPPYLDQYF-YSH--IGHHLKNIEHPERMTLFRMV- 496

Query: 464 LLDL-----------SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 512
            LD            +  N  G I         ++ Y   + P  +  +  +I     FL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAIL---DFL 552

Query: 513 EKQNHEIFEFTTKNI 527
            K    +      ++
Sbjct: 553 PKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 76/496 (15%), Positives = 145/496 (29%), Gaps = 158/496 (31%)

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
           H H      +       G    +  D+L    VF            +   N     + D+
Sbjct: 1   HHHHHHMDFET------GEHQYQYKDILS---VF----------EDAFVDNFDCKDVQDM 41

Query: 251 SNNHLTGEIPEHL-----AVGCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRF 304
             + L+ E  +H+     AV      F  L +   +    F       N ++L +   + 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKT 100

Query: 305 VGEIPQSLSKC--SSLEGLYLNNNSLLGK--IPR---------WLGNLTRLQYIIMPNNH 351
               P  +++      + LY N+N +  K  + R          L  L   + ++     
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----- 154

Query: 352 LEGP-------IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 404
           ++G        + ++ C   S ++    D  I          L++K  +  + +L     
Sbjct: 155 IDGVLGSGKTWVALDVCL--SYKVQCKMDFKI--------FWLNLKNCNSPETVL----- 199

Query: 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL---NQ 461
                    L  L     +++   P+W       S++ L  ++++ E+   L      N 
Sbjct: 200 -------EMLQKL---LYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 462 LQLLD-LSNNNLHGPIPPCFDN------TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 514
           L +L  + N          F+       TT  +  ++  S      I             
Sbjct: 247 LLVLLNVQNAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPD 301

Query: 515 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574
           +   +              K L      D     L    P ++          L+ N   
Sbjct: 302 EVKSLL------------LKYL------DCRPQDL----PREV----------LTTNPRR 329

Query: 575 GSI--------PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
            SI         +T+ N KHV       +KL               +   + N L  E  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVN-----CDKLT-------------TIIESSLNVL--EPA 369

Query: 627 EWKAQF---ATFNESS 639
           E++  F   + F  S+
Sbjct: 370 EYRKMFDRLSVFPPSA 385

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIG--DVLPSLYVFNNS 227
             ++ +   N  +       I     +R L +  N +       I     L +L     +
Sbjct: 41  NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILT 93

Query: 228 MNALDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 286
            N L  S+P+  F  +  L+ L L  N L   +P+ +     NL +L L++N LQ  L  
Sbjct: 94  GNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPK 150

Query: 287 RNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRWLG--- 337
             F  LTNL  L L  N+      QSL      K + L+ L L  N L   +P   G   
Sbjct: 151 GVFDKLTNLTELDLSYNQL-----QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFD 202

Query: 338 NLTRLQYIIMPNN 350
            LT LQYI + +N
Sbjct: 203 RLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPN 349
                  L+      +   + ++ +S++ +  NN+ +  +  I      L  ++Y+ +  
Sbjct: 19  AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGG 72

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGT 407
           N L   I     +L +L  L ++ N +  SLP+  F  L+ +K++ L +N L   L  G 
Sbjct: 73  NKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLD 466
           F   ++L  L+L++N+L  S+P  V D L+ L+ L L +N L+        +L QL+ L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187

Query: 467 LSNNNL 472
           L  N L
Sbjct: 188 LYQNQL 193

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 15/120 (12%)

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQ 295
           + + N    + LDL    +   I E+L         +  S+N ++       F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 296 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-----LGNLTRLQYIIMPNN 350
            L +  NR              L  L L NN     +        L +L  L Y+ +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
           N    + L L G + +  I    +     + +  ++N +  K+      L RL+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI-RKLDG-FPLLRRLKTLLVNN 73

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNIS 377
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 523 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
           T + I    Q         LDL   K I  I      L +   ++ S N +   +   F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFP 61

Query: 583 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
            L+ +++L ++NN++          L  L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
           +L     +  + N++R  L      +  L+ L V++N++   I       L  + EL+L+
Sbjct: 40  TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT 96

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEI 105
           NN       L+PL +   L       N +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/149 (20%), Positives = 47/149 (31%), Gaps = 30/149 (20%)

Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
           L    L+ +  +   N  R + + +    +   I      LD    +D SDN I      
Sbjct: 4   LTAE-LIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR----- 55

Query: 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 442
                                K   F     L TL ++ NR+          L  L+ LI
Sbjct: 56  ---------------------KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94

Query: 443 LGHNNLEGEVSVQ-LCELNQLQLLDLSNN 470
           L +N+L     +  L  L  L  L +  N
Sbjct: 95  LTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 533 GKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL 590
           G  L     +D S N++  +   P     L R++TL +++N +          L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 591 DLSNNKLNG-KIPHQLVELKTLEVFSVAYN 619
            L+NN L        L  LK+L    +  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
           M       + ++    + V  +EL +    +   +    A +     +D S N++     
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---K 56

Query: 61  SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 120
                 L  ++ L+++NN     I          L      NN +  E+ +   L + K 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSL-VELGDLDPLASLK- 113

Query: 121 QLNTLSLSSN 130
            L  L +  N
Sbjct: 114 SLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 368 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
           ++ ++   I        + +  +++ L    +   +             +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 428 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 472
           +  +   L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
           N + +  G   L  L+ L + +N +          +  L  L +++N L       PL  
Sbjct: 52  NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 100
           L S+  L +  N    P++ +   +Y RL +   
Sbjct: 112 LKSLTYLCILRN----PVTNKK--HY-RLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 166 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 225
             N  +   L L    +     L   +  +   +D S+N IR      +   L +L V N
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 73

Query: 226 NSMNALDGSIPSSFGNMKFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNNNLQGH 283
           N +  +   +      +  L  L L+NN L   G++ + LA    +L +L +  N +   
Sbjct: 74  NRICRIGEGLDQ---ALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 284 LFSRNFNLTNLQWLQ 298
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 18/148 (12%)

Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 269
           +P  I      L +  NS+ +L       F  +  L  L L  N L   +P  +     +
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLP---NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 270 LQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYL 323
           L +L LS N LQ  L +  F+ LT L+ L L  N+      QSL      K + L+ L L
Sbjct: 78  LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRL 131

Query: 324 NNNSLLGKIPR-WLGNLTRLQYIIMPNN 350
             N L   +P      LT LQYI + +N
Sbjct: 132 YQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 367 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
             LD+  N++       F  L+ + Q++L  N L   L  G F   +SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 426 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
            S+P+ V D L+QL  L L  N L+        +L QL+ L L  N L       FD 
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 31/159 (19%)

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
               +L LE N           + +SL  LYL  N            L  L         
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----------LQSL--------- 67

Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFF 409
              P  V F +L SL  L++S N +  SLP+  F  L+ +K++ L+ N L   L  G F 
Sbjct: 68  ---PNGV-FNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121

Query: 410 NCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNN 447
             + L  L L  N+L  S+PD V D L+ L ++ L H+N
Sbjct: 122 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 304
             L L++N L     + L     +L  L L  N L G +    F   +++Q LQL  N+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 305 VGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRWLG---NLTRLQYIIMPNN 350
                + +S         L+ L L +N  +  +    G   +L  L  + + +N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 444
           PL   ++ L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 482
            N ++   +     L+QL+ L+L +N +   + P  F++
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILDLSNNHL 255
            +L +++N +       +   LP L       N L   I  + F     +Q L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 256 TGEIPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLEGN 302
             EI   + +G   L+ L L +N +     G  F    +L +L  L L  N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 593
           L  L  L+L  N+L G I P      + IQ L L  N +   I +  F  L  +++L+L 
Sbjct: 53  LPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 594 NNKLNGKIPH----QLVELKTLEVFS 615
           +N+++  +       L  L +L + S
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLAS 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 287 RNFNLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
           RN   ++++ L L+ +R   G++     +   LE L   N  L   I   L  L +L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 346 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
            + +N + G + V   +  +L  L++S N I 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
           +  L + N+  N  +G +       + L+ L   N  LT  I  +L      L+ L LS+
Sbjct: 19  VKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSD 73

Query: 278 NNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNN 326
           N + G L        NL  L L GN+       + L K  +L+ L L N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582
                         L  L      L  I ++P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 583 NLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 619
              ++  L+LS NK+        L +L+ L+   +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 525 KNIAYIYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 583
           + I    + +  S +  L L  ++   G +         ++ L+  +  LT SI +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPK 62

Query: 584 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           L  ++ L+LS+N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 14  GLCSLVHLQELYIASNDLR--GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 71
                  L+ L   +  L    +LP     +  L+ L++S N+++            ++ 
Sbjct: 37  LTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVS-GGLEVLAEKCPNLT 91

Query: 72  ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 105
            L LS N  +   ++EPL     LK  +  N E+
Sbjct: 92  HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
            G+     L  L  L++L ++ N + G L        +L  L++S N++    +  PL  
Sbjct: 52  VGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 100
           L +++ L L N      ++     +Y R  +F  
Sbjct: 112 LENLKSLDLFNC----EVTNLN--DY-RENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 27/110 (24%)

Query: 362 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
           + + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 470
           NR++G +    +    L+HL L  N ++   +++ L +L  L+ LDL N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 385 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG 444
            P  +K++ L  +  +     G       L  L      L  SI + +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 445 HNNLEGEVSVQLCELNQLQLLDLSNNNL 472
            N + G + V   +   L  L+LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 287 RNFNLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 345
           RN     ++ L L+  +   G+I    ++  +LE L L N  L+  +   L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 346 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377
            +  N + G + +   +L +L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 303
           ++ L L N        E L    VNL+FL+L N  L       N   L  L+ L+L  NR
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNN---HLEGPIPV 358
             G +     K  +L  L L+ N L  +  +   L  L  L+ + + N    +L      
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 359 EFCQLDSLQILDISDNNIS 377
            F  L  L  LD  D    
Sbjct: 142 VFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
           LD   +   G I         ++ L+L +  L  S+ S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 602 PHQLVELKTLEVFSVAYNNLS 622
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 539 LSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
           L  L L    L  + ++P     L +++ L LS N + G +      L ++  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 597 LNG-KIPHQLVELKTLEVFSVAYN 619
           L        L +L+ L+   +   
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 359 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 418
               +  L +LD   +N           ++++ + L    L              L  L+
Sbjct: 22  TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLE 77

Query: 419 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 470
           LS NR+ G +    + L  L+HL L  N L+   +++ L +L  L+ LDL N 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 15  LCSLVHLQELYIASNDLR--GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 72
               V+L+ L + +  L    +LP     +  L+ L++S N++           L ++  
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIF-GGLDMLAEKLPNLTH 99

Query: 73  LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 105
           L LS N  +   +LEPL     LK  +  N E+
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
            G++    L  L  L++L ++ N + G L      + +L  L++S N+L    +  PL  
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 98
           L  ++ L L N      ++     +Y R  +F
Sbjct: 119 LECLKSLDLFNC----EVTNLN--DY-RESVF 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 168 NNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVF 224
               +  L L N          + +    L  L + N  +       + ++  LP L   
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNN 278
             S N + G +      +  L  L+LS N L     + E L      L+ L L N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
           P +++++ L     +     G      +L  L L    L  S+ + +  L +L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 446 NNLEGEVSVQLCELNQLQLLDLSNNNL 472
           N + G + +   +L  L  L+LS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRF 304
             L+L +N L   +P  +      L  L+LS N +Q  L    F+ LT L  L L  N+ 
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL 88

Query: 305 VGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNN 350
                QSL      K + L+ L L+ N  L  +P      LT LQ I +  N
Sbjct: 89  -----QSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 59/381 (15%), Positives = 121/381 (31%), Gaps = 48/381 (12%)

Query: 121 QLNTLSLSSNYGD---GFIFPKFLYHQHDLEYVDLS--HIKMNGEFPNWLLENNTKLETL 175
            L  L L  +  D   G     F      L  +++S    +++      L+     L++L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 176 FL---VNDSLAGPFRLPIHSHKRLRQLDVS--NNNIRGHIPVKIGDV---LPSLYVFNNS 227
            L   V           +    +L +L        +R  +   +         L   +  
Sbjct: 217 KLNRAVPLEKLATL---LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR 287
            +A+   +P+ +     L  L+LS   +       L   C  LQ L + +      L   
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 288 NFNLTNLQWLQLEGNRFVGEIP---------QSLSK-CSSLEGLYLNNNSL----LGKIP 333
                +L+ L++  +      P          S+S  C  LE +      +    L  I 
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393

Query: 334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH 393
           R   N+TR +  I+                 +L+ LDI    I            ++++ 
Sbjct: 394 RNRPNMTRFRLCIIEPKA---------PDYLTLEPLDIGFGAIVEHCK------DLRRLS 438

Query: 394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL-NGSIPDWVDGLSQLSHLILGHNNLEGEV 452
           LS  +L  ++          +  L +++    +  +   + G   L  L +       + 
Sbjct: 439 LS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497

Query: 453 SVQLCE-LNQLQLLDLSNNNL 472
            +     L  ++ L +S+ ++
Sbjct: 498 LLANASKLETMRSLWMSSCSV 518

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 294
           + ++   +K  + L LS N++  +I   L+ G  NL+ L+L  N ++  + + +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-----LGNLTRLQYIIMPN 349
           + L +  N+        + K  +L  LY++NN    KI  W     L  L +L+ +++  
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNN----KITNWGEIDKLAALDKLEDLLLAG 149

Query: 350 N 350
           N
Sbjct: 150 N 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
           N + +   L  + +L+ L +  N ++  +    A   +L  L +S NQ+    S S +  
Sbjct: 58  NNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA---SLSGIEK 113

Query: 67  LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL 115
           L ++  L +SNN       ++ L    +L+      N +  +  E+++ 
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           L     L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +S N
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103

Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLS 622
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 314 KCSSLEGLYLNNN-SLLGKIPRWLGNLTRLQYIIMPNNH---LEGPIPVEFCQLDSLQIL 369
             +  E + L+     + K+   L  L   +++ +  N+   +          +++L+IL
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRIL 75

Query: 370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 429
            +  N I            I+                      +L  L +SYN++  S+ 
Sbjct: 76  SLGRNLIK----------KIE---------------NLDAVADTLEELWISYNQIA-SLS 109

Query: 430 DWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 470
             ++ L  L  L + +N +     +  L  L++L+ L L+ N
Sbjct: 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 23/169 (13%)

Query: 164 WLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSL- 221
            +L+    L  L +          +       L+ L++ +  +   +   I    LP+L 
Sbjct: 166 PVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 222 ----------YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--N 269
                     Y F+  MN               L+ L + +      + E      +   
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 270 LQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 314
           L+ + +S   L       L      + +L+++ ++ N    E+ + L K
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 31/223 (13%)

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
            + +N        G F+        ++S+        D    L  +  L          +
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ----VDLSPVLDAMPLLNNLKIKGTNNL 185

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD-EQFEIFFSIEGHQGF 511
           S+       L+ L++ +  L   +               S  P+ E+  ++  +E +   
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDI---------LGSDLPNLEKLVLYVGVEDY--- 233

Query: 512 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN---LTRIQTLNL 568
                   F+        ++       L  L +   +    +         L +++T+++
Sbjct: 234 -------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 569 SHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 607
           S   LT      +      +KH++ +++  N L+ ++  +L +
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 8/206 (3%)

Query: 147 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NN 205
           ++++DLS+  +     + +L   +KL+ L L    L+ P    +  +  L +L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 206 IRGHIPVKIGDVLPSLYVFN--NSMNALDGSIPSSFG-NMKFLQILDLS--NNHLTGEIP 260
                   +      L   N     +  +  +  +     + +  L+LS    +L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 261 EHLAVGCVNLQFLALSN-NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSL 318
             L   C NL  L LS+   L+   F   F L  LQ L L     +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQY 344
           + L +      G +      L  LQ 
Sbjct: 275 KTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 49/241 (20%), Positives = 79/241 (32%), Gaps = 52/241 (21%)

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL-QGHLFSRNFNLTNL 294
           P   G +    ++         + P         +Q + LSN+ +    L       + L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR--LQYIIMPNNHL 352
           Q L LEG R    I  +L+K S+L  L L+  S            +   LQ +       
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----------GFSEFALQTL------- 163

Query: 353 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 412
                +  C    L  L++S          CF          ++  +   +         
Sbjct: 164 -----LSSCS--RLDELNLS---------WCFD--------FTEKHVQVAVAH----VSE 195

Query: 413 SLVTLDLSYNRLN---GSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLS 468
           ++  L+LS  R N     +   V     L HL L     L+ +   +  +LN LQ L LS
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 469 N 469
            
Sbjct: 256 R 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 48/232 (20%), Positives = 76/232 (32%), Gaps = 52/232 (22%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
           +Q +DLSN+ +       +   C  LQ L+L    L   + +     +NL  L L G   
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 305 VGE--IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT--RLQYIIMPNNHLEGPIPVEF 360
             E  +   LS CS L+ L L           W  + T   +Q  +   +          
Sbjct: 155 FSEFALQTLLSSCSRLDELNL----------SWCFDFTEKHVQVAVAHVSE--------- 195

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDL 419
               ++  L++S              L    +  L +              C +LV LDL
Sbjct: 196 ----TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDL 229

Query: 420 SY-NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSN 469
           S    L          L+ L HL L         ++  L E+  L+ L +  
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 33/258 (12%)

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSR--NFNLTNLQ 295
               L  ++L++  L       L    +  + L L  N+L              +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 296 WLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRWLGNLTRLQY 344
            L+L  N      V  + + L+  +S+  L L +  L       L      L    +LQ 
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ---LDRNRQLQE 215

Query: 345 IIMPNNHLEGPIPVEFCQL----DSLQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNM 398
           + +  N       +   +      SL++L +  N +S  G            +      +
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR-DLGGAAEGGARVVV 274

Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 458
              +    + +    L  +  + N  + +    V    +L    L  +        +  +
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRAR---VQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 459 L----NQLQLLDLSNNNL 472
           L     +++ L     + 
Sbjct: 332 LLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 52/309 (16%)

Query: 42  MTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY-SRLK 96
           ++SLR L+++  ++T      +++       +++E+ L++     P  L  L     R +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRAR 129

Query: 97  IFNAENNEIKAEITE--SHSLIAPKFQLNTLSLSSNY----GDGFIFPKFLYHQHDLEYV 150
               + N +  E  +     L+  + Q+ TL LS+N     G   +      +   + ++
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHL 188

Query: 151 DLSHIKMNGEFPNWL---LENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSN 203
            L H  +  E    L   L+ N +L+ L +  +      A         H  L  L +  
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
           N +                  +     L     ++ G  + + +       ++       
Sbjct: 249 NELS-----------------SEGRQVLRDLGGAAEGGAR-VVVSLTEGTAVS------- 283

Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC----SSLE 319
               V L  +  + N+       R+  L       LE +R     P   ++       + 
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQRHLELLL---RDLEDSRGATLNPWRKAQLLRVEGEVR 340

Query: 320 GLYLNNNSL 328
            L     S 
Sbjct: 341 ALLEQLGSS 349

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTN 293
           IP++       Q+L L +N +T ++   +      L  L L NN L   L +  F+ LT 
Sbjct: 28  IPTT------TQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQ 79

Query: 294 LQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 326
           L  L L  N+ +  IP+ +     SL  ++L NN
Sbjct: 80  LTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 13/105 (12%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN------LQGHLF 285
              +P+   +   +Q +D +++ +     +H+  G   ++ + L   +      L+  L 
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLE-RLS 107

Query: 286 SRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLL 329
                  ++  +++     V +    +L    +L+ L+L++   +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 53/175 (30%)

Query: 165 LLENNTKLETLFLVN-----DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
           +  N+  LE + L N               + ++  +++  +        +   + ++L 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 279
                NN+                 L+ L++ +N ++G     L          AL +N 
Sbjct: 91  V----NNT-----------------LKSLNVESNFISGSGILALVE--------ALQSN- 120

Query: 280 LQGHLFSRNFNLTNLQWLQLEGNRF------VGEIPQSLSKCSSLEGLYLNNNSL 328
                       T+L  L+++            EI   L K ++L     +    
Sbjct: 121 ------------TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTN 293
           IP+        Q L L+NN +T ++   +    VNLQ L  ++N L   + +  F  LT 
Sbjct: 31  IPTD------KQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQ 82

Query: 294 LQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNN 326
           L  L L  N       +S+         SL  +YL NN
Sbjct: 83  LTQLDLNDNHL-----KSIPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	717
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.86

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.2e-74  Score=655.62  Aligned_cols=642  Identities=30%  Similarity=0.426  Sum_probs=532.9

Q ss_pred             ccccCCCCCCeeeCCCCCCCCCcch--hccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc--
Q 005038           13 QGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP--   88 (717)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--   88 (717)
                      ..|+++++|++|||++|.+.+.+|.  .++++++|++|||++|.+.+.+|...+.++++|++|++++|.+++..+...  
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            3688888899999998888887777  888888999999999888877776444788889999999888875444221  


Q ss_pred             ccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhC
Q 005038           89 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN  168 (717)
Q Consensus        89 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  168 (717)
                      +.++++|++|++++|.+.+..+     ...+++|++|++ .++.+.+.+|. +..+++|++|++++|.+++.+|..+ ..
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~  245 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-ST  245 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TT
T ss_pred             hccCCCCCEEECCCCcccccCC-----cccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hc
Confidence            6788899999999988875433     256779999999 55566666776 8999999999999999998888775 88


Q ss_pred             CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038          169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL  248 (717)
Q Consensus       169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  248 (717)
                      +++|++|++++|.+.+..+..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus       246 l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  323 (768)
T 3rgz_A          246 CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL  323 (768)
T ss_dssp             CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence            999999999999998876654  889999999999999999999988877999999999999999999999999999999


Q ss_pred             EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCC-CCCeEECcCCcCcccCcccccC--CCCCCEEEccC
Q 005038          249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNN  325 (717)
Q Consensus       249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~  325 (717)
                      ++++|.+++.+|...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+..  +++|++|++++
T Consensus       324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            99999999899988777899999999999999988999988887 9999999999999888877776  88999999999


Q ss_pred             CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccC
Q 005038          326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLK  404 (717)
Q Consensus       326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~  404 (717)
                      |.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+. .++|+.|++++|.+.+.++
T Consensus       404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            999999999999999999999999999999999999999999999999999988887665 7899999999999988877


Q ss_pred             ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccc
Q 005038          405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT  484 (717)
Q Consensus       405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  484 (717)
                      .. +..+++|++|++++|++.+.+|.++..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+....
T Consensus       484 ~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          484 SG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             HH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence            66 89999999999999999999999999999999999999999999999999999999999999999999998776543


Q ss_pred             ccccccCCCCCCcc----------------hhhhhhcccccccccccccceEEEeecccee-e-eccccccccceeeCCC
Q 005038          485 LHESYSNSSSPDEQ----------------FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY-I-YQGKVLSLLSGLDLSC  546 (717)
Q Consensus       485 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~L~~L~L~~  546 (717)
                      ..............                ...+.... ..............+..+.... + .....++.|+.|||++
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~  641 (768)
T 3rgz_A          563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY  641 (768)
T ss_dssp             TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred             chhhhhcccccccccccccccccccccccccccccccc-chhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence            22211111000000                00000000 0000000000000000000000 0 1123467899999999


Q ss_pred             CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       547 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      |++++.+|..++++++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus       642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 005038          627 EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGN  667 (717)
Q Consensus       627 ~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~  667 (717)
                      +. +++.++...++.|||.+||.|++.|.......+..+.|
T Consensus       722 ~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~  761 (768)
T 3rgz_A          722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR  761 (768)
T ss_dssp             SS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC---------
T ss_pred             Cc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCC
Confidence            86 68999999999999999999988898766655544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.1e-66  Score=590.26  Aligned_cols=636  Identities=27%  Similarity=0.371  Sum_probs=539.7

Q ss_pred             CCCCCccee---eCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECC
Q 005038            1 MSSCEVNGV---VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLS   76 (717)
Q Consensus         1 l~~~~~~g~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~   76 (717)
                      |+++++.|.   +| .++.++++|+.++++.+.+. .+|..|+++++|++|||++|.+.+.+|. ..++++++|++|+++
T Consensus        57 L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls  134 (768)
T 3rgz_A           57 LSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS  134 (768)
T ss_dssp             CTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred             CCCCCcCCccCccC-hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence            578889998   88 48999999999999999876 4568899999999999999999987765 258999999999999


Q ss_pred             CCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCC
Q 005038           77 NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK  156 (717)
Q Consensus        77 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  156 (717)
                      +|.+.+..+...+.++++|++|++++|.+.+..+..+..+..+++|++|+++. +.+.+..+.  ..+++|++|++++|.
T Consensus       135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~--~~l~~L~~L~Ls~n~  211 (768)
T 3rgz_A          135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-NKISGDVDV--SRCVNLEFLDVSSNN  211 (768)
T ss_dssp             SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCS-SEEESCCBC--TTCTTCCEEECCSSC
T ss_pred             CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCC-CcccccCCc--ccCCcCCEEECcCCc
Confidence            99998777765568999999999999999876655443456778999999944 445544443  789999999999999


Q ss_pred             CcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCC
Q 005038          157 MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP  236 (717)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  236 (717)
                      +.+.+|.  +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..   .+++|++|++++|.+.+.+|
T Consensus       212 l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip  286 (768)
T 3rgz_A          212 FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIP  286 (768)
T ss_dssp             CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCC
T ss_pred             CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccC
Confidence            9987777  589999999999999999988999999999999999999999877765   57899999999999999999


Q ss_pred             ccccCC-CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCccc-ccCCCCCCeEECcCCcCcccCcccccC
Q 005038          237 SSFGNM-KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFVGEIPQSLSK  314 (717)
Q Consensus       237 ~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~  314 (717)
                      ..+... ++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..|..+..
T Consensus       287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  365 (768)
T 3rgz_A          287 DFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN  365 (768)
T ss_dssp             CCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred             HHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence            988775 9999999999999978887765 5999999999999998777765 899999999999999999889998988


Q ss_pred             CC-CCCEEEccCCcCcCcCCcccCC--CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-ccccc
Q 005038          315 CS-SLEGLYLNNNSLLGKIPRWLGN--LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIK  390 (717)
Q Consensus       315 l~-~L~~L~L~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~  390 (717)
                      ++ +|++|++++|.+.+..|..+..  +++|+.|++++|.+++.+|..+..+++|++|++++|.+.+..|..+. .++|+
T Consensus       366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  445 (768)
T 3rgz_A          366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR  445 (768)
T ss_dssp             HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence            87 9999999999999888887776  88999999999999999999999999999999999999988887765 78999


Q ss_pred             EEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                      .|++++|.+.+.++.. +..+++|++|++++|++.+..|.++.++++|++|++++|++++..|..+..+++|++|++++|
T Consensus       446 ~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            9999999998887776 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCcccccccccccccCCCCCCc-ch-hhhhhcccccccccccccceEEEeeccceee---------------ecc
Q 005038          471 NLHGPIPPCFDNTTLHESYSNSSSPDE-QF-EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI---------------YQG  533 (717)
Q Consensus       471 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~  533 (717)
                      ++++.+|..+..++.++......+... .. ..++..................+........               ...
T Consensus       525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence            999999999888775555444433211 11 1111110000000000111122221111000               001


Q ss_pred             ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038          534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  613 (717)
Q Consensus       534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~  613 (717)
                      ..++.++.++++.|.+.+.+|..++.+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+|+.+..+++|++
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence            23455667888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcCeecCCCCCcccCCCCcccccCCcCCCC
Q 005038          614 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG  648 (717)
Q Consensus       614 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~  648 (717)
                      ||+++|+++|.+|..+..+..++.+.+++|+....
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            99999999999999999999999999999976543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.8e-62  Score=551.61  Aligned_cols=609  Identities=21%  Similarity=0.223  Sum_probs=427.9

Q ss_pred             CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038            2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ   81 (717)
Q Consensus         2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~   81 (717)
                      ++++++ .||. .+.  +++++|++++|.+++..+..|.++++|++|+|++|.+++ ++..+|.++++|++|++++|.++
T Consensus        12 s~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           12 SHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             CSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccC
Confidence            456666 6774 343  789999999999998888889999999999999999984 44448899999999999999987


Q ss_pred             CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038           82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF  161 (717)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  161 (717)
                       .++...|.++++|++|++++|.+....+..   +..+++|++|++ +++.+.+..+..+..+++|++|++++|.+++..
T Consensus        87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNP---FVKQKNLITLDL-SHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             -CCCTTTTTTCTTCSEEECCSSCCCCCCSCT---TTTCTTCCEEEC-CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             -ccChhhhccCCCCCEEECCCCccCccChhH---ccccCCCCEEEC-CCCcccccCchhhcccccCCEEEccCCcccccC
Confidence             466567899999999999999987654433   566779999999 555666777788889999999999999998655


Q ss_pred             Chhh-hhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccc--cCCCCcEEECCCCCCCccCCcc
Q 005038          162 PNWL-LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDGSIPSS  238 (717)
Q Consensus       162 ~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~  238 (717)
                      +..+ ...+++|++|++++|.+.+..+..+..+++|+.|+++++.+.+.....+..  ..++|+.|++++|.+.+..|..
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            5443 125688999999999999888888888888888888887765322221111  1367888888888888777777


Q ss_pred             ccCCCC--CCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcc-----cCc--
Q 005038          239 FGNMKF--LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-----EIP--  309 (717)
Q Consensus       239 l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~--  309 (717)
                      +..++.  |++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|...+     .+|  
T Consensus       242 ~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          242 FLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             TGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             hhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence            777654  888888888887 4444444568888888888888888778888888888888888765432     122  


Q ss_pred             --ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC--cccccCC--CCCCCEEEccCCcCcccCCCc
Q 005038          310 --QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQ--LDSLQILDISDNNISGSLPSC  383 (717)
Q Consensus       310 --~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~~n~~~~~~~~~  383 (717)
                        ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+...  ....|..  .++|+.|++++|++.+..+..
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~  400 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA  400 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence              2577788888888888888877777788888888888888864322  2222322  257888888888888777766


Q ss_pred             cc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccc--cccchhccCCC
Q 005038          384 FH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELN  460 (717)
Q Consensus       384 ~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~  460 (717)
                      +. .++|+.|++++|.+.+.++...|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|..+..++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            54 6788888888888877777666888888888888888887777778888888888888888876  45677788888


Q ss_pred             CCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccc
Q 005038          461 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS  540 (717)
Q Consensus       461 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  540 (717)
                      +|+.|++++|++++..+..|..+.                                                     +|+
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~-----------------------------------------------------~L~  507 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLE-----------------------------------------------------KLE  507 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------------------TCC
T ss_pred             CCCEEECCCCCCCcCChhhhcccc-----------------------------------------------------ccC
Confidence            888888888888876666665543                                                     566


Q ss_pred             eeeCCCCccCCCC--------cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCC
Q 005038          541 GLDLSCNKLIGHI--------PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE  612 (717)
Q Consensus       541 ~L~L~~n~l~~~~--------~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~  612 (717)
                      .|++++|++++..        +..+.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence            6666666655321        11255566666666666666644444566666666666666666654455556666666


Q ss_pred             EEeccCCcCeecCCCCCc-ccCCCCcccccCCcCCCCCCC-C--------------------CCCCCCCCCCCCCCCCCC
Q 005038          613 VFSVAYNNLSGEIPEWKA-QFATFNESSYEGNTFLCGLPL-P--------------------ICRSPATMPEASIGNEQD  670 (717)
Q Consensus       613 ~L~l~~N~l~~~~p~~~~-~~~~l~~~~~~~n~~~c~~~l-~--------------------~C~~~~~~~~~~~~~~~~  670 (717)
                      .|++++|.+++..|..+. .+.+++.+.+.+|||.|+|+. .                    .|..|...+++++.+.++
T Consensus       588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  667 (680)
T 1ziw_A          588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDT  667 (680)
T ss_dssp             EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------------------
T ss_pred             EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccCh
Confidence            666666666655554444 455566666666666666652 1                    377777777766666665


Q ss_pred             Cccc
Q 005038          671 DNLI  674 (717)
Q Consensus       671 ~~~~  674 (717)
                      ..+.
T Consensus       668 ~~~~  671 (680)
T 1ziw_A          668 SSCK  671 (680)
T ss_dssp             ----
T ss_pred             hhcC
Confidence            5443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-58  Score=521.42  Aligned_cols=596  Identities=21%  Similarity=0.230  Sum_probs=479.8

Q ss_pred             CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038            1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF   80 (717)
Q Consensus         1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~   80 (717)
                      |++|.+.+ +++.+|.++++|++|++++|.+++..|.+|+++++|++|+|++|.++ .+|..+|.++++|++|++++|.+
T Consensus        32 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           32 LTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence            68899885 55568999999999999999999999999999999999999999998 78876899999999999999999


Q ss_pred             cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhc--CCCCCCEEEccCCCCc
Q 005038           81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLY--HQHDLEYVDLSHIKMN  158 (717)
Q Consensus        81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~  158 (717)
                      ++ ++...|.++++|++|++++|.+....+..   +..+++|++|++ .++.+.+..+..+.  .+++|++|++++|.+.
T Consensus       110 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          110 QK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCCTTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             Cc-cChhHccccCCCCEEECCCCcccccCchh---hcccccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCccc
Confidence            74 55567999999999999999998765443   466789999999 55556666666554  5689999999999998


Q ss_pred             ccCChhhhhCCCCCCEEEccCCcCcccCccCc---CCCCCcCEEEccCCcCCccCCcccccc-CCCCcEEECCCCCCCcc
Q 005038          159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPI---HSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSLYVFNNSMNALDGS  234 (717)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~ls~n~i~~~~~~~~~~~-l~~L~~L~l~~n~~~~~  234 (717)
                      +..|.. +..+++|+.+++.++.+.......+   ...++|++|++++|.+++..+..+... .++|++|++++|.+.+.
T Consensus       185 ~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          185 EFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             ccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            666655 4789999999999988764322111   134789999999999987666655542 24599999999999988


Q ss_pred             CCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCc---------cCcccccCCCCCCeEECcCCcCc
Q 005038          235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---------HLFSRNFNLTNLQWLQLEGNRFV  305 (717)
Q Consensus       235 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~l~  305 (717)
                      .|..+..+++|++|++++|.+.+..|.. +.++++|++|++++|...+         .....|..+++|++|++++|.+.
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            8899999999999999999998544444 4579999999999875442         12236788999999999999999


Q ss_pred             ccCcccccCCCCCCEEEccCCcCcC--cCCcccCC--CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCC
Q 005038          306 GEIPQSLSKCSSLEGLYLNNNSLLG--KIPRWLGN--LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP  381 (717)
Q Consensus       306 ~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  381 (717)
                      +..+..|..+++|++|++++|.+..  .....|..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            9888899999999999999997542  22223333  3689999999999998889999999999999999999987655


Q ss_pred             -Ccc-ccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC--cccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038          382 -SCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN--GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC  457 (717)
Q Consensus       382 -~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  457 (717)
                       ..+ ..++|+.|++++|.+.+. ....|..+++|++|++++|.+.  +..|..+..+++|+.|++++|++++..+..+.
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  501 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE  501 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccccCcccccEEecCCCCccee-ChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence             333 478999999999998654 4445899999999999999986  46788899999999999999999988888899


Q ss_pred             CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038          458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  537 (717)
Q Consensus       458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  537 (717)
                      .+++|++|++++|++++..+..+....                                             ......++
T Consensus       502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------------------------~~~~~~l~  536 (680)
T 1ziw_A          502 GLEKLEILDLQHNNLARLWKHANPGGP---------------------------------------------IYFLKGLS  536 (680)
T ss_dssp             TCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------------------------CCTTTTCT
T ss_pred             cccccCEEeCCCCCccccchhhccCCc---------------------------------------------chhhcCCC
Confidence            999999999999999865433221110                                             00012245


Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhc-CCCCCCEEec
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~-~l~~L~~L~l  616 (717)
                      +|+.|+|++|+++...+..|.++++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..+. .+++|+.|++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            899999999999966666799999999999999999988778899999999999999999988888887 7899999999


Q ss_pred             cCCcCeecCC--CCCcccCCCCccccc--CCcCCCCCCC
Q 005038          617 AYNNLSGEIP--EWKAQFATFNESSYE--GNTFLCGLPL  651 (717)
Q Consensus       617 ~~N~l~~~~p--~~~~~~~~l~~~~~~--~n~~~c~~~l  651 (717)
                      ++|++.|.++  .|+..|..-....+.  .....|..|.
T Consensus       617 ~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~  655 (680)
T 1ziw_A          617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP  655 (680)
T ss_dssp             TTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred             cCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCch
Confidence            9999999887  566665433322232  2456787764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-57  Score=523.77  Aligned_cols=582  Identities=21%  Similarity=0.178  Sum_probs=397.6

Q ss_pred             CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038            2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ   81 (717)
Q Consensus         2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~   81 (717)
                      ++++++ .||.    -.++|++|||++|.+++..|..|.++++|++|||++|...+.+++.+|.++++|++|+|++|.++
T Consensus        12 s~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           12 RFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             SCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             cCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            456666 6773    45799999999999998889999999999999999997766886668999999999999999998


Q ss_pred             CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038           82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF  161 (717)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  161 (717)
                      +. ....|.++++|++|++++|.+.+..+.. ..+..+++|++|+++.|.......+..++++++|++|++++|.+.+..
T Consensus        87 ~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           87 FL-HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             EE-CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             cc-CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            54 3467999999999999999887643322 124566788888885544333233467788888888888888877666


Q ss_pred             ChhhhhCC--CCCCEEEccCCcCcccCccCcCCCCC------cCEEEccCCcCCccCCccccccC--CCCcEEECCCCCC
Q 005038          162 PNWLLENN--TKLETLFLVNDSLAGPFRLPIHSHKR------LRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNAL  231 (717)
Q Consensus       162 ~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~  231 (717)
                      +..+ ..+  ++|+.|++++|.+.+..+..+..+.+      |++|++++|.+++..+..+....  ..++.+.++.+..
T Consensus       165 ~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          165 EHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             SGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             HHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            6554 344  67888888888887766666655554      77888888777766666555432  3455555553322


Q ss_pred             CccCCccccCCCCCCEEEccCCccccccchhhhhC--CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc
Q 005038          232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG--CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP  309 (717)
Q Consensus       232 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  309 (717)
                      ..               .+..+.+. ......+.+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus       244 ~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          244 GA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             BC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence            11               01122333 122222223  3678888888888887777888888888888888888887777


Q ss_pred             ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038          310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI  389 (717)
Q Consensus       310 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  389 (717)
                      ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+...    .++|
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L  383 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSI  383 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSC
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCc
Confidence            788888888888888888887777788888888888888888887777778888888888888888764322    5567


Q ss_pred             cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccch-hccCCCCCCEEEc
Q 005038          390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV-QLCELNQLQLLDL  467 (717)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L  467 (717)
                      +.+++++|.+. .++..    ..+++.|++++|++.+... ..+..+++|+.|++++|++++..+. .+..+++|+.|++
T Consensus       384 ~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          384 PDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             SEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             chhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence            77777777764 33322    3567778888877775322 2345677778888877777754432 3455677777777


Q ss_pred             cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      ++|.+++..+......                                                ....++.|+.|+|++|
T Consensus       459 s~N~l~~~~~~~~~~~------------------------------------------------~~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          459 GENMLQLAWETELCWD------------------------------------------------VFEGLSHLQVLYLNHN  490 (844)
T ss_dssp             ESCCCSSSCCSCCCSS------------------------------------------------CSSCBCCEECCCCCHH
T ss_pred             CCCccccccccccchh------------------------------------------------hhcCcccccEEECCCC
Confidence            7777753322110000                                                0011346777777777


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      ++++..|..|.++++|++|+|++|++++..|..+.  ++|+.|+|++|++++..|+.+   .+|+.|++++|++.|.++.
T Consensus       491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            77766666677777777777777777765555554  677777777777776666544   3566777777777765542


Q ss_pred             CCcccCCCCcccccCCcCCCCCCCCC-CCCCCCCCCCCCCCCCCCccc
Q 005038          628 WKAQFATFNESSYEGNTFLCGLPLPI-CRSPATMPEASIGNEQDDNLI  674 (717)
Q Consensus       628 ~~~~~~~l~~~~~~~n~~~c~~~l~~-C~~~~~~~~~~~~~~~~~~~~  674 (717)
                           ..|..+....+...|+.+... |..|....+.++.+.....|.
T Consensus       566 -----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~  608 (844)
T 3j0a_A          566 -----STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD  608 (844)
T ss_dssp             -----CSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred             -----HHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccCC
Confidence                 122222233445555554443 999998888777666555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.6e-55  Score=488.17  Aligned_cols=566  Identities=20%  Similarity=0.179  Sum_probs=329.1

Q ss_pred             CcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038            5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPI   84 (717)
Q Consensus         5 ~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~   84 (717)
                      +++ +||. .+.  +++++|++++|.+++..|.+|+++++|++|+|++|.+. .+++.+|.++++|++|++++|.+++. 
T Consensus        23 ~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-   96 (606)
T 3t6q_A           23 GLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFM-   96 (606)
T ss_dssp             CCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEE-
T ss_pred             Ccc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCccccc-
Confidence            344 5553 333  26888888888888777888888888888888888887 44433788888888888888888743 


Q ss_pred             CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCC-CCchhhcCCCCCCEEEccCCCCcccCCh
Q 005038           85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF-IFPKFLYHQHDLEYVDLSHIKMNGEFPN  163 (717)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~  163 (717)
                      ....++++++|++|++++|.++...+..   +..+++|++|++++| .+.+ ..|..+ .+++|++|++++|.+++..+.
T Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           97 AETALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CTTTTSSCTTCCEEECTTSCCSCGGGSC---CTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHH
T ss_pred             ChhhhcccccccEeeccccCcccCCcch---hccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChh
Confidence            3356788888888888888877543332   344556666666333 3333 223332 366666666666666533333


Q ss_pred             hhhhCCCCCC--EEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccC
Q 005038          164 WLLENNTKLE--TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN  241 (717)
Q Consensus       164 ~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  241 (717)
                      . +..+++|+  .|++++|.+.+..+..+.. .+|++|++++|...   +. ....+..+....+....+.         
T Consensus       172 ~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~-~~~~l~~~~l~~l~~~~~~---------  236 (606)
T 3t6q_A          172 D-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LV-IFKGLKNSTIQSLWLGTFE---------  236 (606)
T ss_dssp             H-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HH-HHHHTTTCEEEEEECCCCT---------
T ss_pred             h-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HH-Hhhhccccchhheechhhc---------
Confidence            3 35566666  5666666666554444333 45666666655411   11 1111222222211111110         


Q ss_pred             CCCCCEEEccCCccccccchhhhhCCC--CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038          242 MKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE  319 (717)
Q Consensus       242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  319 (717)
                        .+        ... .++...+.++.  +|++|++++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|+
T Consensus       237 --~~--------~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~  304 (606)
T 3t6q_A          237 --DM--------DDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK  304 (606)
T ss_dssp             --TS--------CCC-CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred             --cc--------ccc-ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence              00        000 11122222221  4555555555555555555555555555555555555 3444555555555


Q ss_pred             EEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcc-cccCCCCCCCEEEccCCcCcccC--CCc-cccccccEEecc
Q 005038          320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSL--PSC-FHPLSIKQVHLS  395 (717)
Q Consensus       320 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~-~~~~~L~~L~l~  395 (717)
                      +|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..  +.. ...++|+.|+++
T Consensus       305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  384 (606)
T 3t6q_A          305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS  384 (606)
T ss_dssp             EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred             EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence            55555555554445555555555555555555543332 23555555555555555554332  211 123444444444


Q ss_pred             CcccccccCccccCCCCcCCEEeCCCCcCCcccch-hhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCcc
Q 005038          396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG  474 (717)
Q Consensus       396 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  474 (717)
                      +|.+.+..+ ..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus       385 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          385 YNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             SCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            444433222 2366777788888888777655443 46777788888888888777777777777888888888877764


Q ss_pred             CC-C--cccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC
Q 005038          475 PI-P--PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG  551 (717)
Q Consensus       475 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  551 (717)
                      .. +  ..+.                                                     .+++|+.|++++|++++
T Consensus       464 ~~~~~~~~~~-----------------------------------------------------~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          464 GNIQKTNSLQ-----------------------------------------------------TLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             GEECSSCGGG-----------------------------------------------------GCTTCCEEECTTSCCCE
T ss_pred             cccccchhhc-----------------------------------------------------cCCCccEEECCCCccCc
Confidence            21 1  1121                                                     13467777777777777


Q ss_pred             CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC-CCc
Q 005038          552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WKA  630 (717)
Q Consensus       552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~  630 (717)
                      ..|..|..+++|++|+|++|++++..|..+.++++| +|++++|++++..|+.+..+++|+.|++++|++.|.++. |+.
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~  569 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL  569 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence            777777777777777777777777777777777777 777777777777777777777777777777777776552 111


Q ss_pred             ccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038          631 QFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ  669 (717)
Q Consensus       631 ~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~~~  669 (717)
                      .|..-....+.      +.....|..|...++.++.+.+
T Consensus       570 ~w~~~~~~~~~------~~~~~~C~~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          570 EWYKENMQKLE------DTEDTLCENPPLLRGVRLSDVT  602 (606)
T ss_dssp             HHHHHCGGGEE------CGGGCBEEESGGGTTCBGGGCC
T ss_pred             HHHHhCccccc------CCCCCeeCCchHhCCCeeeeee
Confidence            11100000000      0111248888888777665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.3e-53  Score=472.75  Aligned_cols=511  Identities=21%  Similarity=0.221  Sum_probs=392.4

Q ss_pred             CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038            1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF   80 (717)
Q Consensus         1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~   80 (717)
                      |++|.+++ +++.+|+++++|++|++++|.+.++.|.+|+++++|++|+|++|.+++..|. +|+++++|++|++++|.+
T Consensus        40 Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           40 FSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             CTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCC
T ss_pred             ccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCc
Confidence            68899985 5447999999999999999999988899999999999999999999844454 899999999999999999


Q ss_pred             cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCC--EEEccCCCCc
Q 005038           81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE--YVDLSHIKMN  158 (717)
Q Consensus        81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~  158 (717)
                      ++ ++...+.++++|++|++++|.+.......   +..+++|++|++ .++.+.+..+..+..+++|+  .|++++|.+.
T Consensus       118 ~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          118 SS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             SC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cc-CCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEEEc-ccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            85 33356899999999999999998643322   344779999999 55666667788899999999  9999999999


Q ss_pred             ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCc----cCCccccccCC--CCcEEECCCCCCC
Q 005038          159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG----HIPVKIGDVLP--SLYVFNNSMNALD  232 (717)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~----~~~~~~~~~l~--~L~~L~l~~n~~~  232 (717)
                      +..|..+  ....|+.|++++|...   +..+..+.+++...+....+.+    .++...+..+.  +++.+++++|.+.
T Consensus       193 ~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          193 GIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             EECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             ccChhHh--hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            7666553  4578999999998632   2333344444333332222211    22222222222  5677777777777


Q ss_pred             ccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc-cc
Q 005038          233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QS  311 (717)
Q Consensus       233 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~  311 (717)
                      +..+..|..+++|++|++++|.++ .+|..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence            666666777777777777777776 6666543 46777777777777776666666677777777777776664443 34


Q ss_pred             ccCCCCCCEEEccCCcCcCcC--CcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038          312 LSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI  389 (717)
Q Consensus       312 ~~~l~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  389 (717)
                      +..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.            
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------  413 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK------------  413 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE------------
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC------------
Confidence            666777777777777666443  555666667777777776666666666666666666666666654            


Q ss_pred             cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc---cchhccCCCCCCEEE
Q 005038          390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE---VSVQLCELNQLQLLD  466 (717)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~  466 (717)
                                 +..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|+.|+
T Consensus       414 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          414 -----------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             -----------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             -----------CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence                       333444478899999999999999988899999999999999999999863   235688999999999


Q ss_pred             ccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCC
Q 005038          467 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC  546 (717)
Q Consensus       467 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  546 (717)
                      +++|++++..|..|..++                                                     .|+.|++++
T Consensus       483 Ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~  509 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLK-----------------------------------------------------MMNHVDLSH  509 (606)
T ss_dssp             CTTSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred             CCCCccCccChhhhcccc-----------------------------------------------------CCCEEECCC
Confidence            999999988887776544                                                     799999999


Q ss_pred             CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038          547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       547 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      |++++..|..+..+++| +|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999 99999999999889889999999999999999987665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.1e-54  Score=479.78  Aligned_cols=565  Identities=19%  Similarity=0.207  Sum_probs=334.0

Q ss_pred             CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038            2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ   81 (717)
Q Consensus         2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~   81 (717)
                      ++++++ .+|. .+.  +++++|++++|.+++..+..|+++++|++|++++|.++ .+++.+|.++++|++|++++|.++
T Consensus        19 ~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           19 MDQKLS-KVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             TTSCCS-SCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred             cCCCcc-cCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence            344555 5664 232  67788888888877766677778888888888888777 444446777888888888877776


Q ss_pred             CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038           82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF  161 (717)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  161 (717)
                      + .....|.++++|++|++++|.+....+..   +..+.+|++|++++|......+|..++++++|++|++++|.+++..
T Consensus        94 ~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           94 S-FSPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             C-CCTTSSTTCTTCCEEECTTSCCCCSSSSC---CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             c-cChhhcCCcccCCEEEccCCccccccccc---cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            4 33356777778888888777776443222   3444566666663333222245556666666666666666555433


Q ss_pred             ChhhhhCCCC----CCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCc
Q 005038          162 PNWLLENNTK----LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS  237 (717)
Q Consensus       162 ~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  237 (717)
                      +..+ ..+++    ++++++++|.+.+..+..+... +|++|++++|.+++.                        ..|.
T Consensus       170 ~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~------------------------~~~~  223 (606)
T 3vq2_A          170 VNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN------------------------IMKT  223 (606)
T ss_dssp             TTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH------------------------HHHH
T ss_pred             hhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh------------------------HHHH
Confidence            3322 22222    2355555555554433333333 555555555555432                        2333


Q ss_pred             cccCCCCCCEEEccCCcccc-----ccchhhhhCCC--CCCEEEc-cCcccCccCcccccCCCCCCeEECcCCcCcccCc
Q 005038          238 SFGNMKFLQILDLSNNHLTG-----EIPEHLAVGCV--NLQFLAL-SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP  309 (717)
Q Consensus       238 ~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~--~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  309 (717)
                      .+.+++.|+.+++..+.+.+     .++...+.++.  .++.+++ ..+.+.+..+. +..+++|++|++++|.+. .+|
T Consensus       224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~  301 (606)
T 3vq2_A          224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE  301 (606)
T ss_dssp             HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred             HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence            34444444444433222110     11111111111  2444444 34444444444 555566666666666554 233


Q ss_pred             ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC--CCc-ccc
Q 005038          310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSC-FHP  386 (717)
Q Consensus       310 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~-~~~  386 (717)
                       .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.  ..+..+++|++|++++|.+.+..  +.. ..+
T Consensus       302 -~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          302 -DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGT  375 (606)
T ss_dssp             -CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred             -hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence             455556666666666665 3444 23 556666666666633321  24445566666666666555431  222 224


Q ss_pred             ccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEE
Q 005038          387 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL  465 (717)
Q Consensus       387 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  465 (717)
                      ++|+.|++++|.+.+ ++ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       376 ~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             SCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            455555555555433 33 337778888888888888887766 577888888888888888888888888888888888


Q ss_pred             EccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeC
Q 005038          466 DLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL  544 (717)
Q Consensus       466 ~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  544 (717)
                      ++++|++++ .+|..+..+                                                     ++|+.|++
T Consensus       454 ~l~~n~l~~~~~~~~~~~l-----------------------------------------------------~~L~~L~L  480 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANT-----------------------------------------------------TNLTFLDL  480 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTC-----------------------------------------------------TTCCEEEC
T ss_pred             ECCCCcCCCcchHHhhccC-----------------------------------------------------CCCCEEEC
Confidence            888888876 355555443                                                     37888899


Q ss_pred             CCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC-CCCEEeccCCcCee
Q 005038          545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSG  623 (717)
Q Consensus       545 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~-~L~~L~l~~N~l~~  623 (717)
                      ++|++++..|..+.++++|++|+|++|++++..|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|
T Consensus       481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            998888888888888999999999999998888888888999999999999988 6677788886 59999999999988


Q ss_pred             cCCC-CCcccCCCCcccccCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCc
Q 005038          624 EIPE-WKAQFATFNESSYEGNTFLC-GLPLPICRSPATMPEASIGNEQDDN  672 (717)
Q Consensus       624 ~~p~-~~~~~~~l~~~~~~~n~~~c-~~~l~~C~~~~~~~~~~~~~~~~~~  672 (717)
                      .++. |+.+|  +.     .++... +.....|..|....+.++.+++...
T Consensus       560 ~c~~~~~~~~--l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          560 ICEHQKFLQW--VK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             SSTTHHHHTT--TT-----TSSSSBSSGGGCCCC-----------------
T ss_pred             CCccHHHHHH--HH-----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence            7663 22222  11     111111 1111248888888887776665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-52  Score=485.43  Aligned_cols=530  Identities=21%  Similarity=0.223  Sum_probs=408.3

Q ss_pred             CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038           22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE  101 (717)
Q Consensus        22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  101 (717)
                      +..|.++++++ .+|.   -.++|++|||++|.++ .++...|.++++|++|++++|...+.++...|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            35777888888 4454   4589999999999998 55444899999999999999977667766789999999999999


Q ss_pred             CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh-hhhCCCCCCEEEccCC
Q 005038          102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW-LLENNTKLETLFLVND  180 (717)
Q Consensus       102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n  180 (717)
                      +|.+....+                            ..+..+++|++|++++|.+++.+|.. .+.++++|++|++++|
T Consensus        82 ~N~l~~~~p----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           82 SSKIYFLHP----------------------------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             TCCCCEECT----------------------------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             CCcCcccCH----------------------------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            998865433                            34445555556666665555433332 2345566666666666


Q ss_pred             cCcccCc-cCcCCCCCcCEEEccCCcCCccCCccccccC--CCCcEEECCCCCCCccCCccccCCCC------CCEEEcc
Q 005038          181 SLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNALDGSIPSSFGNMKF------LQILDLS  251 (717)
Q Consensus       181 ~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~Ls  251 (717)
                      .+.+..+ ..++++++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+.+..|..+..+++      |++|+++
T Consensus       134 ~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence            6655433 34566666666666666665444444332 2  56666666666666655555555444      7888888


Q ss_pred             CCccccccchhhhhCC--CCCCEEEccCc---------ccCccCcccccCC--CCCCeEECcCCcCcccCcccccCCCCC
Q 005038          252 NNHLTGEIPEHLAVGC--VNLQFLALSNN---------NLQGHLFSRNFNL--TNLQWLQLEGNRFVGEIPQSLSKCSSL  318 (717)
Q Consensus       252 ~n~l~~~~~~~~~~~~--~~L~~L~L~~n---------~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L  318 (717)
                      +|.+++.++..+....  ..++.+.++.+         .+.......|.++  ++|++|++++|.+.+..+..+..+++|
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  292 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL  292 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC
T ss_pred             CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC
Confidence            8877766666555322  45777776633         3333344455544  789999999999998888999999999


Q ss_pred             CEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCc
Q 005038          319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKN  397 (717)
Q Consensus       319 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n  397 (717)
                      +.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+. .++|+.|++++|
T Consensus       293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence            9999999999988888999999999999999999988899999999999999999999877776665 789999999999


Q ss_pred             ccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCC
Q 005038          398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPI  476 (717)
Q Consensus       398 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~  476 (717)
                      .+.+      +..+++|+.|++++|++.. +|..   ..+++.|++++|++++... ..+..+++|+.|++++|++++..
T Consensus       373 ~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  442 (844)
T 3j0a_A          373 ALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS  442 (844)
T ss_dssp             CSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred             CCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence            9853      3347899999999999984 4432   5689999999999986543 34568999999999999998654


Q ss_pred             CcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-----C
Q 005038          477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-----G  551 (717)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~  551 (717)
                      +....                                                    ..+++|+.|++++|.+.     +
T Consensus       443 ~~~~~----------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~  470 (844)
T 3j0a_A          443 GDQTP----------------------------------------------------SENPSLEQLFLGENMLQLAWETE  470 (844)
T ss_dssp             SSSSS----------------------------------------------------CSCTTCCBCEEESCCCSSSCCSC
T ss_pred             ccccc----------------------------------------------------ccCCccccccCCCCccccccccc
Confidence            32110                                                    11347999999999997     4


Q ss_pred             CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcc
Q 005038          552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ  631 (717)
Q Consensus       552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  631 (717)
                      ..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+.  ++|+.|++++|++++..|..+  
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--  546 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--  546 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--
T ss_pred             cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--
Confidence            4556789999999999999999999999999999999999999999977776665  899999999999999998754  


Q ss_pred             cCCCCcccccCCcCCCCCCCC
Q 005038          632 FATFNESSYEGNTFLCGLPLP  652 (717)
Q Consensus       632 ~~~l~~~~~~~n~~~c~~~l~  652 (717)
                       ..+..+.+.+||+.|+|+..
T Consensus       547 -~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          547 -VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             -SSCCEEEEEEECCCCSSSCC
T ss_pred             -CCcCEEEecCCCcccccccH
Confidence             57788899999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-52  Score=467.49  Aligned_cols=535  Identities=19%  Similarity=0.169  Sum_probs=431.8

Q ss_pred             CCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEE
Q 005038           20 HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN   99 (717)
Q Consensus        20 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~   99 (717)
                      .-++++.++++++ .+|..+.  ++|++|+|++|.++ .++...|.++++|++|++++|.+++ ++...|.++++|++|+
T Consensus        12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence            3468999999998 5666554  89999999999998 5555589999999999999998874 4445788889999999


Q ss_pred             ccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccC
Q 005038          100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN  179 (717)
Q Consensus       100 l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  179 (717)
                      +++|.+...                            .|..+..+++|++|++++|.+.+..+.. +.++++|++|++++
T Consensus        87 Ls~n~l~~~----------------------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~  137 (606)
T 3vq2_A           87 LTGNPIQSF----------------------------SPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAH  137 (606)
T ss_dssp             CTTCCCCCC----------------------------CTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCS
T ss_pred             CCCCccccc----------------------------ChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCC
Confidence            888876532                            3456667778888888888877443343 47788888888888


Q ss_pred             CcCcc-cCccCcCCCCCcCEEEccCCcCCccCCccccccCCC----CcEEECCCCCCCccCCccccCCCCCCEEEccCCc
Q 005038          180 DSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS----LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH  254 (717)
Q Consensus       180 n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  254 (717)
                      |.+.+ .+|..++++++|++|++++|.+++..+..+.. +++    +.++++++|.+.+..+..+... +|++|++++|.
T Consensus       138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~  215 (606)
T 3vq2_A          138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF  215 (606)
T ss_dssp             SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             CcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence            88876 45777888888889999888888554443332 333    4589999999886666655554 89999999999


Q ss_pred             cccccchhhhhCCCCCCEEEccCcccCc------cCcccccCCC--CCCeEEC-cCCcCcccCcccccCCCCCCEEEccC
Q 005038          255 LTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNFNLT--NLQWLQL-EGNRFVGEIPQSLSKCSSLEGLYLNN  325 (717)
Q Consensus       255 l~~~~~~~~~~~~~~L~~L~L~~n~i~~------~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~  325 (717)
                      +.+......+..++.++.+++..+.+..      .....+.++.  .++.+++ ..+.+.+..|. +..+++|+.|++++
T Consensus       216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~  294 (606)
T 3vq2_A          216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG  294 (606)
T ss_dssp             SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES
T ss_pred             cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecC
Confidence            8755555556679999999887654432      1111222221  4666777 66777777776 89999999999999


Q ss_pred             CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc-C
Q 005038          326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL-K  404 (717)
Q Consensus       326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~  404 (717)
                      |.+. .+| .+..+++|+.|++++|.+. .+| .+ .+++|++|++++|+..+.. .....++|+.|++++|.+.+.. .
T Consensus       295 ~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          295 VSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             CCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred             ccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcch
Confidence            9996 456 7889999999999999994 666 45 8999999999999665544 3446889999999999986542 1


Q ss_pred             ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038          405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNT  483 (717)
Q Consensus       405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  483 (717)
                      ...+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  447 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL  447 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence            3347889999999999999885 56788999999999999999998877 688999999999999999998888776554


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC-CCcccccCCcc
Q 005038          484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTR  562 (717)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~  562 (717)
                      +                                                     +|+.|++++|++.+ ..|..++.+++
T Consensus       448 ~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          448 T-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             T-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccCCC
Confidence            3                                                     79999999999997 47888999999


Q ss_pred             CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC-CCCccccc
Q 005038          563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA-TFNESSYE  641 (717)
Q Consensus       563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l~~~~~~  641 (717)
                      |++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..+. +++.+.+.
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLT  553 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEcc
Confidence            999999999999999999999999999999999999988999999999999999999999 6777677776 59999999


Q ss_pred             CCcCCCCCCCC
Q 005038          642 GNTFLCGLPLP  652 (717)
Q Consensus       642 ~n~~~c~~~l~  652 (717)
                      +||+.|+|+..
T Consensus       554 ~N~~~c~c~~~  564 (606)
T 3vq2_A          554 NNSVACICEHQ  564 (606)
T ss_dssp             SCCCCCSSTTH
T ss_pred             CCCcccCCccH
Confidence            99999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-47  Score=424.83  Aligned_cols=492  Identities=21%  Similarity=0.269  Sum_probs=287.2

Q ss_pred             CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEE
Q 005038           19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF   98 (717)
Q Consensus        19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L   98 (717)
                      +++++|++++|.+++..+.+|.++++|++||+++|.++ .++..+|.++++|++|++++|.++. ++...|.++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence            35666677766666665666666667777777766666 4444466666666666666666653 333456666666666


Q ss_pred             EccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEc
Q 005038           99 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFL  177 (717)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l  177 (717)
                      ++++|.+...                            .+..++.+++|++|++++|.+.+ .+|..+ .++++|++|++
T Consensus       106 ~L~~n~l~~l----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l  156 (570)
T 2z63_A          106 VAVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDL  156 (570)
T ss_dssp             ECTTSCCCCS----------------------------TTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEEC
T ss_pred             cccccccccC----------------------------CCccccccccccEEecCCCccceecChhhh-cccCCCCEEeC
Confidence            6666554321                            11124566677777777776664 345543 55666666666


Q ss_pred             cCCcCcccCccCcCCCCCc----CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038          178 VNDSLAGPFRLPIHSHKRL----RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN  253 (717)
Q Consensus       178 ~~n~~~~~~~~~~~~~~~L----~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n  253 (717)
                      ++|.+.+..+..++.+++|    ++|++++|.++                         +..|..+... +|+.|++++|
T Consensus       157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-------------------------~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-------------------------FIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-------------------------EECTTTTTTC-EEEEEEEESC
T ss_pred             cCCccceecHHHccchhccchhhhhcccCCCCce-------------------------ecCHHHhccC-cceeEecccc
Confidence            6666665555555555555    55666666555                         3333333322 3444444444


Q ss_pred             ccccccchhhhhCCCCCCEEEccCcccC------ccCcccccCCC--CCCeEECcCC-cCcccCcccccCCCCCCEEEcc
Q 005038          254 HLTGEIPEHLAVGCVNLQFLALSNNNLQ------GHLFSRNFNLT--NLQWLQLEGN-RFVGEIPQSLSKCSSLEGLYLN  324 (717)
Q Consensus       254 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  324 (717)
                      ............++++++...+....+.      ......+..++  .++.++++++ .+.+..+..+..+++|++|+++
T Consensus       211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence            2221111122223444443333221111      01111111111  1344444444 4444445555555555666665


Q ss_pred             CCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccC
Q 005038          325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK  404 (717)
Q Consensus       325 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  404 (717)
                      +|.+. .+|..+..+ +|+.|++++|.+.. +|.  ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+...
T Consensus       291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~  364 (570)
T 2z63_A          291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC  364 (570)
T ss_dssp             SCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEE
T ss_pred             Cccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccc
Confidence            55554 345555555 55666665555552 222  2445556666665555443332 334455555555555433210


Q ss_pred             -ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCccccc
Q 005038          405 -RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDN  482 (717)
Q Consensus       405 -~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  482 (717)
                       ...+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus       365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence             22356677777888877777754444 7777778888888777776554 45677777888888877777666655544


Q ss_pred             ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-CCCcccccCCc
Q 005038          483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLT  561 (717)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~  561 (717)
                      ++                                                     +|+.|++++|.+. +.+|..+..++
T Consensus       444 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          444 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             CC-----------------------------------------------------cCcEEECcCCcCccccchhhhhccc
Confidence            33                                                     6777888888776 45677777788


Q ss_pred             cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      +|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            888888888888877777788888888888888888777677777788888888888888877764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.7e-46  Score=413.43  Aligned_cols=488  Identities=20%  Similarity=0.186  Sum_probs=341.7

Q ss_pred             CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038            2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ   81 (717)
Q Consensus         2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~   81 (717)
                      ++++++ +||. .+.  ++|++|++++|++++..|.+|.++++|++|++++|+++ .++..+|.++++|++|++++|.++
T Consensus        13 ~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           13 RSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             TTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCccc-cccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccC
Confidence            455666 6775 332  68888888888888777788888888888888888887 444447888888888888888887


Q ss_pred             CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038           82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF  161 (717)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  161 (717)
                      + .+...++++++|++|++++|.+...                           ..+..+..+++|++|++++|...+.+
T Consensus        88 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A           88 S-LSSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             S-CCHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             c-cCHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECCCCcccccc
Confidence            4 4445577888888888888776531                           12345566778888888888755566


Q ss_pred             ChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccC--C-cc
Q 005038          162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI--P-SS  238 (717)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~  238 (717)
                      |...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+...+++|++|++++|.+.+..  | ..
T Consensus       140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  218 (549)
T 2z81_A          140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV  218 (549)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred             CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence            6544577888888888888888888888888888888888888875 556555555778888888888777532  1 12


Q ss_pred             ccCCCCCCEEEccCCccccccchhhh---hCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCC
Q 005038          239 FGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC  315 (717)
Q Consensus       239 l~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  315 (717)
                      ...+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+....     +   .          .....+..+
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-----~---~----------~~~~~~~~l  280 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-----N---P----------SESDVVSEL  280 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-----C---C----------CTTTCCCCC
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-----c---c----------cchhhhhhh
Confidence            34567788888888877754444332   2345666666666655432100     0   0          001123445


Q ss_pred             CCCCEEEccCCcCcCc-----CCcccCCCCCCCEEEccCCcccCCccccc-CCCCCCCEEEccCCcCcccCCCccccccc
Q 005038          316 SSLEGLYLNNNSLLGK-----IPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLDSLQILDISDNNISGSLPSCFHPLSI  389 (717)
Q Consensus       316 ~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  389 (717)
                      ++++.|++.++.+...     .+..+...++|+.|++++|.+.. +|..+ ..+++|++|++++|++.+..+..      
T Consensus       281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~------  353 (549)
T 2z81_A          281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKN------  353 (549)
T ss_dssp             TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHH------
T ss_pred             cccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccc------
Confidence            5666666666544321     11112223566666666666653 33333 45666666666666665322110      


Q ss_pred             cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc--hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038          390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP--DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  467 (717)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  467 (717)
                                     ...+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ ..|..+..+++|++|++
T Consensus       354 ---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          354 ---------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             ---------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred             ---------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence                           1125567888899999988875432  45788899999999999988 56667788899999999


Q ss_pred             cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      ++|.+++... .+                                                       +++|+.|++++|
T Consensus       418 s~N~l~~l~~-~~-------------------------------------------------------~~~L~~L~Ls~N  441 (549)
T 2z81_A          418 SSTGIRVVKT-CI-------------------------------------------------------PQTLEVLDVSNN  441 (549)
T ss_dssp             TTSCCSCCCT-TS-------------------------------------------------------CTTCSEEECCSS
T ss_pred             CCCCcccccc-hh-------------------------------------------------------cCCceEEECCCC
Confidence            9998864221 11                                                       136899999999


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      ++++..    ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|+.+..+++|+.|++++|+++|.+|
T Consensus       442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          442 NLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             Chhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            998643    57889999999999999 5665 4678999999999999998888889999999999999999999887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=410.38  Aligned_cols=466  Identities=21%  Similarity=0.211  Sum_probs=388.8

Q ss_pred             ccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEE
Q 005038          120 FQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL  199 (717)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  199 (717)
                      .++++|++ .++.+.+..+..+..+++|++|++++|.+++. +...+.++++|++|++++|.+.+..+..+..+++|++|
T Consensus        28 ~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            37999999 55566666677899999999999999999854 44445889999999999999998888899999999999


Q ss_pred             EccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchhhhhCCCCC----CEEE
Q 005038          200 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL----QFLA  274 (717)
Q Consensus       200 ~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L----~~L~  274 (717)
                      ++++|.++ .++......+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++ ++...+..+++|    ++++
T Consensus       106 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             ECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEE
T ss_pred             cccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcc
Confidence            99999998 4554445568999999999999987 478999999999999999999984 443333457777    8999


Q ss_pred             ccCcccCccCcccccCCCCCCeEECcCCcCcc-cCcccccCCC--------------------------------CCCEE
Q 005038          275 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCS--------------------------------SLEGL  321 (717)
Q Consensus       275 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~--------------------------------~L~~L  321 (717)
                      +++|.+.+..+..+... +|++|++++|.... ..+..+..++                                .++.+
T Consensus       184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            99999998888777665 79999998874321 1111222222                                23455


Q ss_pred             EccCC-cCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccc
Q 005038          322 YLNNN-SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH  400 (717)
Q Consensus       322 ~L~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  400 (717)
                      +++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .++. ...++|+.+++++|.+.
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSC
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccc
Confidence            66655 556677788888999999999999998 477778888 9999999999988 4444 46789999999999987


Q ss_pred             cccCccccCCCCcCCEEeCCCCcCCccc--chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC-
Q 005038          401 GQLKRGTFFNCSSLVTLDLSYNRLNGSI--PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-  477 (717)
Q Consensus       401 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  477 (717)
                      +..+.   ..+++|++|++++|.+++..  +..+.++++|++|++++|++.+..+. +..+++|+.|++++|.+.+..+ 
T Consensus       339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred             ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence            65543   57899999999999998654  67889999999999999999976665 8999999999999999987655 


Q ss_pred             cccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccc
Q 005038          478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI  557 (717)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  557 (717)
                      ..+..                                                     +++|+.|++++|.+.+..|..+
T Consensus       415 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~  441 (570)
T 2z63_A          415 SVFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIF  441 (570)
T ss_dssp             CTTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTT
T ss_pred             hhhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhh
Confidence            23333                                                     3479999999999998899999


Q ss_pred             cCCccCCeEeCCCcccC-CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCC
Q 005038          558 GNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN  636 (717)
Q Consensus       558 ~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~  636 (717)
                      .++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+..++
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            99999999999999998 57889999999999999999999988899999999999999999999998888888999999


Q ss_pred             cccccCCcCCCCCCC
Q 005038          637 ESSYEGNTFLCGLPL  651 (717)
Q Consensus       637 ~~~~~~n~~~c~~~l  651 (717)
                      .+.+.+|++.|+||.
T Consensus       522 ~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          522 KIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEecCCcccCCCcc
Confidence            999999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-45  Score=408.11  Aligned_cols=488  Identities=19%  Similarity=0.212  Sum_probs=332.1

Q ss_pred             CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038           22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE  101 (717)
Q Consensus        22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  101 (717)
                      .+.|.+++.++ .+|..+.  ++|++|++++|.++ .++..+|.++++|++|++++|.+++ ++...|.++++|++|+++
T Consensus         8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             ceEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECC
Confidence            34566666666 4444443  66777777777776 3333366677777777777766653 222345555555555555


Q ss_pred             CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCc
Q 005038          102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS  181 (717)
Q Consensus       102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  181 (717)
                      +|.+.+                            ..+..++.+++|++|++++|.+++.                     
T Consensus        83 ~n~l~~----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------  113 (549)
T 2z81_A           83 DNHLSS----------------------------LSSSWFGPLSSLKYLNLMGNPYQTL---------------------  113 (549)
T ss_dssp             TSCCCS----------------------------CCHHHHTTCTTCCEEECTTCCCSSS---------------------
T ss_pred             CCccCc----------------------------cCHHHhccCCCCcEEECCCCccccc---------------------
Confidence            544331                            1223344445555555555544421                     


Q ss_pred             CcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccch
Q 005038          182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE  261 (717)
Q Consensus       182 ~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  261 (717)
                         ..+..++.+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|.
T Consensus       114 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~  189 (549)
T 2z81_A          114 ---GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLE  189 (549)
T ss_dssp             ---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHH
T ss_pred             ---chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccch
Confidence               123445556666666666665433555444444667777777777777777788888899999999999887 7777


Q ss_pred             hhhhCCCCCCEEEccCcccCccC---cccccCCCCCCeEECcCCcCcccCc----ccccCCCCCCEEEccCCcCcCcCC-
Q 005038          262 HLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVGEIP----QSLSKCSSLEGLYLNNNSLLGKIP-  333 (717)
Q Consensus       262 ~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~-  333 (717)
                      .++..+++|++|++++|.+.+..   ......+++|++|++++|.+.+..+    ..+..+++|+.+++++|.+.+... 
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~  269 (549)
T 2z81_A          190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF  269 (549)
T ss_dssp             HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred             hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence            77777899999999999887642   1222356788888888887765433    234566778888888876653211 


Q ss_pred             -----cccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccc
Q 005038          334 -----RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGT  407 (717)
Q Consensus       334 -----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~  407 (717)
                           ..+..+++++.+++.++.+....  .+..+                 +..+ ...+++.+++++|.+. .++...
T Consensus       270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-----------------~~~~~~~~~L~~L~l~~n~l~-~ip~~~  329 (549)
T 2z81_A          270 NPSESDVVSELGKVETVTIRRLHIPQFY--LFYDL-----------------STVYSLLEKVKRITVENSKVF-LVPCSF  329 (549)
T ss_dssp             CCCTTTCCCCCTTCCEEEEESCBCSCGG--GSCCC-----------------CHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred             cccchhhhhhhcccccccccccccchhh--hcccc-----------------hhhhhhcccceEEEeccCccc-cCCHHH
Confidence                 12334445555555554433210  00000                 0000 1235666666666653 566654


Q ss_pred             cCCCCcCCEEeCCCCcCCcccch---hhhCCCCCcEEEcCCCccccccc--hhccCCCCCCEEEccCCcCccCCCccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPD---WVDGLSQLSHLILGHNNLEGEVS--VQLCELNQLQLLDLSNNNLHGPIPPCFDN  482 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  482 (717)
                      +..+++|++|++++|++.+..|.   .+..+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|..+..
T Consensus       330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~  408 (549)
T 2z81_A          330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW  408 (549)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC
T ss_pred             HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc
Confidence            56789999999999999876643   36789999999999999986643  568899999999999999973 4544333


Q ss_pred             ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCcc
Q 005038          483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR  562 (717)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  562 (717)
                                                                           +++|++|++++|++++ +|..+  .++
T Consensus       409 -----------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~  432 (549)
T 2z81_A          409 -----------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQT  432 (549)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTT
T ss_pred             -----------------------------------------------------cccccEEECCCCCccc-ccchh--cCC
Confidence                                                                 3479999999999984 44433  268


Q ss_pred             CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccC
Q 005038          563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEG  642 (717)
Q Consensus       563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~  642 (717)
                      |++|++++|++++.    +..+++|++|+|++|+++ .+|+ ...+++|++|++++|++++..|.++..+..++.+.+.+
T Consensus       433 L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          433 LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             CSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             ceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence            99999999999964    257899999999999998 6675 46799999999999999999999889999999999999


Q ss_pred             CcCCCCCC
Q 005038          643 NTFLCGLP  650 (717)
Q Consensus       643 n~~~c~~~  650 (717)
                      ||+.|+|+
T Consensus       507 N~~~~~~~  514 (549)
T 2z81_A          507 NPWDCSCP  514 (549)
T ss_dssp             SCBCCCHH
T ss_pred             CCccCCCc
Confidence            99999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.9e-45  Score=411.51  Aligned_cols=560  Identities=20%  Similarity=0.187  Sum_probs=347.9

Q ss_pred             cceeeCcccccCC-CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038            6 VNGVVRSQGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPI   84 (717)
Q Consensus         6 ~~g~i~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~   84 (717)
                      ++ +||.    ++ +.+++|||++|+|+++.+.+|.++++|++|||++|+|+ .+++.+|.++++|++|+|++|+++ .+
T Consensus        43 l~-~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l  115 (635)
T 4g8a_A           43 FY-KIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SL  115 (635)
T ss_dssp             CS-SCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred             cC-ccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CC
Confidence            44 5664    33 37899999999999777788999999999999999998 777768999999999999999887 45


Q ss_pred             CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh
Q 005038           85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW  164 (717)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  164 (717)
                      +...|.++++|++|++++|+++...+..   +..+++|++|++++|.......|..+..+++|++|++++|.+++..+..
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            6677889999999999999887654333   4556678888885554434456777777788888888888777554443


Q ss_pred             hhhCCC----CCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCC------Ccc
Q 005038          165 LLENNT----KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL------DGS  234 (717)
Q Consensus       165 ~~~~~~----~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~------~~~  234 (717)
                      + ..+.    ....++++.|.+....+..+ ....++.+++++|.....+.......++.++...+..+..      ...
T Consensus       193 l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 L-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             G-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             c-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            2 2222    23466677776665443333 2334566677666554333333333344554444332211      111


Q ss_pred             CCccccCCCCCCEEEccCCcccc---ccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038          235 IPSSFGNMKFLQILDLSNNHLTG---EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS  311 (717)
Q Consensus       235 ~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  311 (717)
                      ....+.....+...++..+....   .+.. .+....+++.+.+.++.+...  ..+.....++.|++.+|.+....+  
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--  345 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT--  345 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC--
T ss_pred             cccccccccchhhhhhhhhhhcccccchhh-hhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc--
Confidence            22223333334444333322110   0111 111234455555554444322  122333445555555554443221  


Q ss_pred             ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccC--CcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038          312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI  389 (717)
Q Consensus       312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  389 (717)
                       ..+..|+.+++.+|.....  .....+++|+.+++++|.+..  ..+..+..+.+                       +
T Consensus       346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~-----------------------L  399 (635)
T 4g8a_A          346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-----------------------L  399 (635)
T ss_dssp             -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC-----------------------C
T ss_pred             -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhh-----------------------h
Confidence             1233444455444443321  112234444455544444321  12222333444                       4


Q ss_pred             cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      +.+++..+.... ... .+..+++|+.++++.+......+ ..+..+++++.++++.|.+.+..+..+..+++|+.|+++
T Consensus       400 ~~L~~~~~~~~~-~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls  477 (635)
T 4g8a_A          400 KYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  477 (635)
T ss_dssp             CEEECCSCSEEE-ECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             hhhhcccccccc-ccc-cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            455544444422 222 26677888888888776554433 456778888888888888888888888888888888888


Q ss_pred             CCcCc-cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          469 NNNLH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       469 ~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      +|.+. +..|..|..+                                                     ++|++|+|++|
T Consensus       478 ~N~~~~~~~~~~~~~l-----------------------------------------------------~~L~~L~Ls~N  504 (635)
T 4g8a_A          478 GNSFQENFLPDIFTEL-----------------------------------------------------RNLTFLDLSQC  504 (635)
T ss_dssp             TCEEGGGEECSCCTTC-----------------------------------------------------TTCCEEECTTS
T ss_pred             hcccccccCchhhhhc-----------------------------------------------------cccCEEECCCC
Confidence            88743 3345444433                                                     37888888888


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC-CCCCEEeccCCcCeecCC
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p  626 (717)
                      ++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|+.+..+ ++|++|++++|+++|.+.
T Consensus       505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            8888888889999999999999999998888889999999999999999998888888887 689999999999988654


Q ss_pred             -CCCcccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038          627 -EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ  669 (717)
Q Consensus       627 -~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~~~  669 (717)
                       .|+.+|.  +    ......-+.....|.+|...+|+++.+++
T Consensus       585 ~~~~~~wl--~----~~~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          585 HQSFLQWI--K----DQRQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             GHHHHHHH--H----HTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             cHHHHHHH--H----hCCCccCCCCCceeCCchHHCCCEeeeec
Confidence             2222221  0    01111111122349999999998776664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-46  Score=415.88  Aligned_cols=394  Identities=20%  Similarity=0.250  Sum_probs=279.6

Q ss_pred             CCcCcccCccCcCCCCCcCEEEccCCcCCcc-----------------CCcccc-ccCCCCcEEECCCCCCCccCCcccc
Q 005038          179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH-----------------IPVKIG-DVLPSLYVFNNSMNALDGSIPSSFG  240 (717)
Q Consensus       179 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-----------------~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~  240 (717)
                      .|.+++ +|..++++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            466776 677788888888888888888864                 676665 2367888888888888778888888


Q ss_pred             CCCCCCEEEccCCc-ccc-ccchhhhh-----CCCCCCEEEccCcccCccCcc--cccCCCCCCeEECcCCcCcccCccc
Q 005038          241 NMKFLQILDLSNNH-LTG-EIPEHLAV-----GCVNLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFVGEIPQS  311 (717)
Q Consensus       241 ~l~~L~~L~Ls~n~-l~~-~~~~~~~~-----~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~  311 (717)
                      ++++|++|++++|+ +++ .+|..+..     .+++|++|++++|.++ .+|.  .+..+++|++|++++|.+.+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            88888888888887 776 67776653     1377888888887777 5666  67777777777777777776666 6


Q ss_pred             ccCCCCCCEEEccCCcCcCcCCcccCCCCC-CCEEEccCCcccCCcccccCCCC--CCCEEEccCCcCcccCCCcccccc
Q 005038          312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPNNHLEGPIPVEFCQLD--SLQILDISDNNISGSLPSCFHPLS  388 (717)
Q Consensus       312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~  388 (717)
                      +..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++  +|++|++++|.+.+..|..+..  
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--  424 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--  424 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT--
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc--
Confidence            777777777777777776 66666777777 777777777777 4566655543  6777777777776555443220  


Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-------C
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-------Q  461 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~  461 (717)
                                    .... ...+++|++|++++|.++...+..+..+++|++|++++|+++...+..+....       +
T Consensus       425 --------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          425 --------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             --------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred             --------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence                          0000 11456788888888888855555566788888888888888844444444333       8


Q ss_pred             CCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccce
Q 005038          462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  541 (717)
Q Consensus       462 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  541 (717)
                      |+.|++++|+++ .+|..+..                                                   ..+++|+.
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------------~~l~~L~~  517 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRA---------------------------------------------------TTLPYLVG  517 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred             ccEEECcCCcCC-ccChhhhh---------------------------------------------------ccCCCcCE
Confidence            888888888887 44443320                                                   01347888


Q ss_pred             eeCCCCccCCCCcccccCCccCCeEeC------CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038          542 LDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  615 (717)
Q Consensus       542 L~L~~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~  615 (717)
                      |+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|+
T Consensus       518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~  593 (636)
T 4eco_A          518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD  593 (636)
T ss_dssp             EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred             EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence            8888888886 7888888889999988      56778888999999999999999999999 47777655  7899999


Q ss_pred             ccCCcCeecCCCCCccc--CCCCcccccCCcCCCCCC
Q 005038          616 VAYNNLSGEIPEWKAQF--ATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       616 l~~N~l~~~~p~~~~~~--~~l~~~~~~~n~~~c~~~  650 (717)
                      +++|++.+.-+..+...  .....+.+.....+|+|+
T Consensus       594 Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             CCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             CcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            99998886544332221  222334445555555654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-45  Score=398.58  Aligned_cols=462  Identities=18%  Similarity=0.186  Sum_probs=293.0

Q ss_pred             CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038           22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE  101 (717)
Q Consensus        22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  101 (717)
                      ++||+++|+++ .+|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+++ +....|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecC
Confidence            57899999998 5666665  89999999999998 5554478899999999999998874 333568888888888888


Q ss_pred             CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEccCC
Q 005038          102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFLVND  180 (717)
Q Consensus       102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n  180 (717)
                      +|.++..                             |..  .+++|++|++++|.+++ .+|..+ .++++|++|++++|
T Consensus        78 ~N~l~~l-----------------------------p~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           78 HNKLVKI-----------------------------SCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTT  125 (520)
T ss_dssp             SSCCCEE-----------------------------ECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEES
T ss_pred             CCceeec-----------------------------Ccc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCc
Confidence            8876521                             111  45788888888888875 355554 67788888888888


Q ss_pred             cCcccCccCcCCCCCc--CEEEccCCcC--CccCCccccccCCCCcEEECCCCCCCccCC-ccccCCCCCCEEEccCCcc
Q 005038          181 SLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNNHL  255 (717)
Q Consensus       181 ~~~~~~~~~~~~~~~L--~~L~ls~n~i--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l  255 (717)
                      .+.+   ..+..+++|  ++|++++|.+  .+..|..+...-.+...+++++|.+.+.++ ..+..+++|+.|++++|..
T Consensus       126 ~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          126 HLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             SCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             ccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            7765   344555556  7777777777  444444332211112234444444443222 2334445555555555430


Q ss_pred             ccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccc---cCCCCCCEEEccCCcCcCcC
Q 005038          256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL---SKCSSLEGLYLNNNSLLGKI  332 (717)
Q Consensus       256 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~~~  332 (717)
                      .....                  .+.+..+ .+..+++|++|++++|.+.+..+..+   ...++|++|++++|.+.+.+
T Consensus       203 ~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (520)
T 2z7x_B          203 DNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL  263 (520)
T ss_dssp             TTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred             ccccc------------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence            00000                  0222222 33444444555444444332111100   01235555555555555445


Q ss_pred             Cccc-----CCCCCCCEEEccCCcccCCcccccCCC---CCCCEEEccCCcCcccCCCccccccccEEeccCcccccccC
Q 005038          333 PRWL-----GNLTRLQYIIMPNNHLEGPIPVEFCQL---DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK  404 (717)
Q Consensus       333 ~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  404 (717)
                      |..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+..                       .. 
T Consensus       264 p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------~~-  318 (520)
T 2z7x_B          264 DFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-----------------------ML-  318 (520)
T ss_dssp             CCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-----------------------CC-
T ss_pred             ccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-----------------------cc-
Confidence            5444     4455555555555554 1111222222   345555555554431                       11 


Q ss_pred             ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccc--ccchhccCCCCCCEEEccCCcCccCCCc-ccc
Q 005038          405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVSVQLCELNQLQLLDLSNNNLHGPIPP-CFD  481 (717)
Q Consensus       405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~  481 (717)
                        .+..+++|++|++++|++++..|..+..+++|++|++++|++++  ..|..+..+++|++|++++|++.+.+|. .+.
T Consensus       319 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          319 --CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             --CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             --chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence              02456778888888888887777777888888888888888875  3456677888888888888888763332 222


Q ss_pred             cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038          482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  561 (717)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  561 (717)
                      .                                                     +++|+.|++++|++++..|..+.  +
T Consensus       397 ~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          397 W-----------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             C-----------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             c-----------------------------------------------------CccCCEEECcCCCCCcchhhhhc--c
Confidence            2                                                     23688888888888776666554  7


Q ss_pred             cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCch-hhcCCCCCCEEeccCCcCeecCC
Q 005038          562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH-QLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++. +|. .+..+++|++|++++|+++|.++
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            8999999999998 677777789999999999999984 554 48889999999999999998765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-45  Score=412.53  Aligned_cols=366  Identities=18%  Similarity=0.214  Sum_probs=302.4

Q ss_pred             CCCCCccCCccccCCCCCCEEEccCCccccc-----------------cchhhh-hCCCCCCEEEccCcccCccCccccc
Q 005038          228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGE-----------------IPEHLA-VGCVNLQFLALSNNNLQGHLFSRNF  289 (717)
Q Consensus       228 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~  289 (717)
                      .|.+++ +|..++++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            467777 788888899999999999988864                 777664 2488899999999988888888888


Q ss_pred             CCCCCCeEECcCCc-Ccc-cCcccccCC------CCCCEEEccCCcCcCcCCc--ccCCCCCCCEEEccCCcccCCcccc
Q 005038          290 NLTNLQWLQLEGNR-FVG-EIPQSLSKC------SSLEGLYLNNNSLLGKIPR--WLGNLTRLQYIIMPNNHLEGPIPVE  359 (717)
Q Consensus       290 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~  359 (717)
                      ++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.+. .+|.  .+..+++|+.|++++|.+.+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            89999999999998 877 677777665      88999999999888 7777  88888999999999998887777 8


Q ss_pred             cCCCCCCCEEEccCCcCcccCCCcccccc-ccEEeccCcccccccCccccCCC--CcCCEEeCCCCcCCcccchhhh---
Q 005038          360 FCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVD---  433 (717)
Q Consensus       360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~~~---  433 (717)
                      +..+++|++|++++|.+..........++ |+.|++++|.+. .++.. +...  ++|++|++++|.+.+..|..+.   
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            88888999999999988833333344677 999999999886 56654 5554  4899999999999998888887   


Q ss_pred             ----CCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccc
Q 005038          434 ----GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ  509 (717)
Q Consensus       434 ----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (717)
                          .+++|++|++++|++++..+..+..+++|+.|++++|.++...+..+....                         
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-------------------------  481 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-------------------------  481 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-------------------------
T ss_pred             cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-------------------------
Confidence                788999999999999976666777899999999999999844433332211                         


Q ss_pred             ccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc--CCccCCeEeCCCcccCCCCCcCCCCCCCC
Q 005038          510 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHV  587 (717)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  587 (717)
                                           ...+.+++|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|
T Consensus       482 ---------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L  538 (636)
T 4eco_A          482 ---------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL  538 (636)
T ss_dssp             ---------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred             ---------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence                                 00112347999999999999 6788876  99999999999999997 89999999999


Q ss_pred             CEEEC------CCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCC
Q 005038          588 ESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL  649 (717)
Q Consensus       588 ~~L~L------~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~  649 (717)
                      ++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  .+++.+.+.+|++.|-.
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            99999      56788889999999999999999999999 68888654  78999999999998743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.7e-43  Score=392.74  Aligned_cols=535  Identities=20%  Similarity=0.178  Sum_probs=384.6

Q ss_pred             CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038           22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE  101 (717)
Q Consensus        22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  101 (717)
                      ++.+-++.+++ .+|..+.  +++++|||++|+|+ .++..+|.++++|++|+|++|.+++ ++..+|.++++|++|+|+
T Consensus        34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEcc
Confidence            35566777777 5565553  58999999999998 7877789999999999999999984 565789999999999999


Q ss_pred             CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCc
Q 005038          102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS  181 (717)
Q Consensus       102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  181 (717)
                      +|+++...                            +..|..+++|++|++++|.++ .++...+.++++|++|++++|.
T Consensus       109 ~N~l~~l~----------------------------~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          109 GNPIQSLA----------------------------LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             TCCCCEEC----------------------------GGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCcCCCCC----------------------------HHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCc
Confidence            99876432                            234555666666666666666 3444334666677777777776


Q ss_pred             Cccc-CccCcCCCCCcCEEEccCCcCCccCCccccc---cCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCcccc
Q 005038          182 LAGP-FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD---VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG  257 (717)
Q Consensus       182 ~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  257 (717)
                      +... .+..++.+++|++|++++|.+++..+..+..   .......++++.|.+....+..+ ....++.+++.+|....
T Consensus       160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSH
T ss_pred             cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccc
Confidence            6543 3455666777777777777776443333221   11123456777777765444433 33456677777776654


Q ss_pred             ccchhhhhCCCCCCEEEccCccc------CccCcccccCCCCCCeEECcCCcCcc---cCcccccCCCCCCEEEccCCcC
Q 005038          258 EIPEHLAVGCVNLQFLALSNNNL------QGHLFSRNFNLTNLQWLQLEGNRFVG---EIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       258 ~~~~~~~~~~~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      .++...+.++..++...+..+..      .......+.....+...++..+....   ..+..+....+++.+++.++.+
T Consensus       239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (635)
T 4g8a_A          239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI  318 (635)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred             cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence            55555566677777666643322      22223334444555555554433221   2233455667788888888776


Q ss_pred             cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc-Cccc
Q 005038          329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL-KRGT  407 (717)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~  407 (717)
                      ...  ..+.....++.|++.+|.+.+..+.   .+..|+.+++..|.... .+.....++|+.+++++|.+.... ....
T Consensus       319 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  392 (635)
T 4g8a_A          319 ERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQS  392 (635)
T ss_dssp             EEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred             ccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccc
Confidence            533  2345567788888888887654433   35677888888877653 333345678888888888774321 1223


Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccccc-chhccCCCCCCEEEccCCcCccCCCccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH  486 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  486 (717)
                      +..+.+|+++++..+.... .+..+..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+...   
T Consensus       393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~---  468 (635)
T 4g8a_A          393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---  468 (635)
T ss_dssp             HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC---
T ss_pred             hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc---
Confidence            5567889999999988774 4556778999999999988776544 3567889999999999999987777665543   


Q ss_pred             ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-CCCcccccCCccCCe
Q 005038          487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQT  565 (717)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~  565 (717)
                                                                        +.++.|++++|.+. +..|..|..+++|++
T Consensus       469 --------------------------------------------------~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          469 --------------------------------------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             --------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             --------------------------------------------------hhhhhhhhhhcccccccCchhhhhccccCE
Confidence                                                              37999999999854 456788999999999


Q ss_pred             EeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc-CCCCcccccCCc
Q 005038          566 LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF-ATFNESSYEGNT  644 (717)
Q Consensus       566 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~  644 (717)
                      |+|++|+++++.|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++..|..+..+ .+++.+.+.+||
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            9999999999999999999999999999999998889999999999999999999999999988877 679999999999


Q ss_pred             CCCCCCC
Q 005038          645 FLCGLPL  651 (717)
Q Consensus       645 ~~c~~~l  651 (717)
                      |.|+|.+
T Consensus       579 ~~C~C~~  585 (635)
T 4g8a_A          579 FACTCEH  585 (635)
T ss_dssp             BCCSGGG
T ss_pred             CcccCCc
Confidence            9999865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.8e-44  Score=405.25  Aligned_cols=383  Identities=21%  Similarity=0.246  Sum_probs=255.8

Q ss_pred             CcCCccCCccccccCCCCcEEECCCCCCCc-----------------cCCcccc--CCCCCCEEEccCCccccccchhhh
Q 005038          204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDG-----------------SIPSSFG--NMKFLQILDLSNNHLTGEIPEHLA  264 (717)
Q Consensus       204 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~  264 (717)
                      |.+++ +|..+.. +++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            44443 4444333 4555555555555554                 2555555  666666666666666556664443


Q ss_pred             hCCCCCCEEEccCcc-cCc-cCccccc-------CCCCCCeEECcCCcCcccCcc--cccCCCCCCEEEccCCcCcCcCC
Q 005038          265 VGCVNLQFLALSNNN-LQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIP  333 (717)
Q Consensus       265 ~~~~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~  333 (717)
                       .+++|++|++++|+ +++ .+|..+.       .+++|++|++++|.+. .+|.  .+..+++|+.|++++|.+. .+|
T Consensus       513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence             36666666666665 554 4444333       3346666666666666 5555  6666666666666666666 555


Q ss_pred             cccCCCCCCCEEEccCCcccCCcccccCCCCC-CCEEEccCCcCcccCCCcccc---ccccEEeccCcccccccCccc--
Q 005038          334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILDISDNNISGSLPSCFHP---LSIKQVHLSKNMLHGQLKRGT--  407 (717)
Q Consensus       334 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~--  407 (717)
                       .|..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..   .+|+.|++++|.+.+.++...  
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             5666666666777666666 55556666666 777777766666 44444432   236677777776655443210  


Q ss_pred             cC--CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCC-------CCCCEEEccCCcCccCCCc
Q 005038          408 FF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL-------NQLQLLDLSNNNLHGPIPP  478 (717)
Q Consensus       408 ~~--~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~  478 (717)
                      +.  .+++|++|++++|.+....+..+..+++|+.|++++|+++......+...       ++|+.|+|++|+++ .+|.
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence            11  34589999999999985444445688999999999999984444333332       38999999999987 4554


Q ss_pred             ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc
Q 005038          479 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG  558 (717)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  558 (717)
                      .+..                                                   ..+++|+.|+|++|++++ +|..+.
T Consensus       746 ~l~~---------------------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~  773 (876)
T 4ecn_A          746 DFRA---------------------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPL  773 (876)
T ss_dssp             GGST---------------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             Hhhh---------------------------------------------------ccCCCcCEEEeCCCCCCc-cchhhh
Confidence            4430                                                   013479999999999996 688889


Q ss_pred             CCccCCeEeCCC------cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc
Q 005038          559 NLTRIQTLNLSH------NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  632 (717)
Q Consensus       559 ~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  632 (717)
                      .+++|+.|+|++      |++.+.+|..|..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++....+..+...
T Consensus       774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~  850 (876)
T 4ecn_A          774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY  850 (876)
T ss_dssp             GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred             cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence            999999999976      788889999999999999999999999 58888765  699999999999987766655544


Q ss_pred             CCCCcccccCCcCCC--CCC
Q 005038          633 ATFNESSYEGNTFLC--GLP  650 (717)
Q Consensus       633 ~~l~~~~~~~n~~~c--~~~  650 (717)
                      .......+.+|+..+  +||
T Consensus       851 ~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          851 IEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHTTCCEEECCTTSEEESCG
T ss_pred             ccchheeecCCCccccCCCC
Confidence            444455566665544  654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5e-43  Score=384.14  Aligned_cols=456  Identities=20%  Similarity=0.189  Sum_probs=327.5

Q ss_pred             CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038            1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF   80 (717)
Q Consensus         1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~   80 (717)
                      +|+|+++ .||. .+.  ++|++|++++|.+++..|.+|.++++|++|+|++|+++ .+++..|.++++|++|++++|.+
T Consensus         7 ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            7 RSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred             cCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence            6889999 7885 444  89999999999999888899999999999999999998 45434899999999999999999


Q ss_pred             cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 005038           81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE  160 (717)
Q Consensus        81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  160 (717)
                      + .++..   .+++|++|++++|.+...                           .+|..++.+++|++|++++|.+.+.
T Consensus        82 ~-~lp~~---~l~~L~~L~L~~N~l~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~  130 (520)
T 2z7x_B           82 V-KISCH---PTVNLKHLDLSFNAFDAL---------------------------PICKEFGNMSQLKFLGLSTTHLEKS  130 (520)
T ss_dssp             C-EEECC---CCCCCSEEECCSSCCSSC---------------------------CCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred             e-ecCcc---ccCCccEEeccCCccccc---------------------------cchhhhccCCcceEEEecCcccchh
Confidence            8 34432   788999999988876531                           2456778888899999998888752


Q ss_pred             CChhhhhCCCCC--CEEEccCCcC--cccCccCcCCCC-CcCEEEccCCcCCccCCccccccCCCCcEEECCCCC-----
Q 005038          161 FPNWLLENNTKL--ETLFLVNDSL--AGPFRLPIHSHK-RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA-----  230 (717)
Q Consensus       161 ~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~-----  230 (717)
                          .+..+++|  +.|++++|.+  .+..+..+..+. +...+++++|.+.+.++......+++|+.+++++|.     
T Consensus       131 ----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  206 (520)
T 2z7x_B          131 ----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC  206 (520)
T ss_dssp             ----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred             ----hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence                23567777  9999999988  666676666655 344678899998888888777778999999999987     


Q ss_pred             --CCccCCccccCCCCCCEEEccCCccccccchhhhh--CCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcC
Q 005038          231 --LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV--GCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEG  301 (717)
Q Consensus       231 --~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~  301 (717)
                        +.+.+| .+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|.+.+.+|..+     ..+++|+.+++++
T Consensus       207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~  285 (520)
T 2z7x_B          207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS  285 (520)
T ss_dssp             HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred             ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence              555555 6888899999999988877543333221  13567777777777766566655     4555555555555


Q ss_pred             CcCcccCc-ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038          302 NRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL  380 (717)
Q Consensus       302 n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  380 (717)
                      |.+  .+| ..+..+                     ....+|+.|++++|.+....  ....+++|++|++++|++.+..
T Consensus       286 n~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~  340 (520)
T 2z7x_B          286 DVF--GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTV  340 (520)
T ss_dssp             CCC--CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred             cce--ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhh
Confidence            554  222 222222                     00033444444444443211  1134556666666666555322


Q ss_pred             CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc--ccchhhhCCCCCcEEEcCCCccccccc-hhcc
Q 005038          381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVS-VQLC  457 (717)
Q Consensus       381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~  457 (717)
                      +.                        .+..+++|++|++++|++.+  .+|..+..+++|++|++++|++++..| ..+.
T Consensus       341 ~~------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          341 FE------------------------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             TT------------------------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hh------------------------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            21                        14556667777777777664  345667778888888888888876333 3477


Q ss_pred             CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038          458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  537 (717)
Q Consensus       458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  537 (717)
                      .+++|+.|++++|++++..|..+.                                                       +
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~-------------------------------------------------------~  421 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP-------------------------------------------------------P  421 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC-------------------------------------------------------T
T ss_pred             cCccCCEEECcCCCCCcchhhhhc-------------------------------------------------------c
Confidence            788888888888888755443321                                                       2


Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      .|+.|++++|+++ .+|..+..+++|++|++++|+++++.+..|..+++|++|++++|++.+..+
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            6899999999998 677777799999999999999995444459999999999999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-43  Score=400.05  Aligned_cols=395  Identities=19%  Similarity=0.228  Sum_probs=215.7

Q ss_pred             CchhhcCCCCCCEEEccCCCCccc-CChhhhhCCCCCCEEEccCCcCcccCccCcC--CCCCcCEEEccCCcCCccCCcc
Q 005038          137 FPKFLYHQHDLEYVDLSHIKMNGE-FPNWLLENNTKLETLFLVNDSLAGPFRLPIH--SHKRLRQLDVSNNNIRGHIPVK  213 (717)
Q Consensus       137 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~ls~n~i~~~~~~~  213 (717)
                      +|..++.+++|++|++++|.+++. ++...   .      ..+.+...+.+|..++  .+++|++|++++|.+.+.+|..
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~  510 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---E------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF  510 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---S------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccc---c------ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence            566666666666666666666651 00000   0      0000111112444443  4555555555555544444433


Q ss_pred             ccccCCCCcEEECCCCC-CCc-cCCcccc-------CCCCCCEEEccCCccccccch-hhhhCCCCCCEEEccCcccCcc
Q 005038          214 IGDVLPSLYVFNNSMNA-LDG-SIPSSFG-------NMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGH  283 (717)
Q Consensus       214 ~~~~l~~L~~L~l~~n~-~~~-~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~L~~n~i~~~  283 (717)
                      +.. +++|++|++++|+ +++ .+|..+.       .+++|++|++++|.++ .+|. ..+..+++|++|++++|.++ .
T Consensus       511 l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~  587 (876)
T 4ecn_A          511 LYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H  587 (876)
T ss_dssp             GGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred             HhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence            332 4455555555554 444 3443333       2336666666666665 5555 12234666666666666665 3


Q ss_pred             CcccccCCCCCCeEECcCCcCcccCcccccCCCC-CCEEEccCCcCcCcCCcccCCCCC--CCEEEccCCcccCCccccc
Q 005038          284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS-LEGLYLNNNSLLGKIPRWLGNLTR--LQYIIMPNNHLEGPIPVEF  360 (717)
Q Consensus       284 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~  360 (717)
                      +| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|...
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence            44 5566666666666666666 55555666666 666666666665 45555544433  6666666666655433211


Q ss_pred             ---C--CCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccccC-------CCCcCCEEeCCCCcCCcc
Q 005038          361 ---C--QLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFF-------NCSSLVTLDLSYNRLNGS  427 (717)
Q Consensus       361 ---~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~~~~~  427 (717)
                         .  .+++|+.|++++|.+.......+ .+++|+.|++++|.+. .++...+.       ++++|++|+|++|+++ .
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~  742 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S  742 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred             hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence               1  22355555665555542111111 1222333333333222 22222121       2225555555555555 3


Q ss_pred             cchhhh--CCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038          428 IPDWVD--GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  505 (717)
Q Consensus       428 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (717)
                      +|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++|+                                  
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------------------  787 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------------------  787 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------
Confidence            444443  45555555555555554 34444455555555555442                                  


Q ss_pred             ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038          506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  585 (717)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  585 (717)
                                                           ++++|++.+.+|..+..+++|++|+|++|++. .+|..+.  +
T Consensus       788 -------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~  827 (876)
T 4ecn_A          788 -------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--P  827 (876)
T ss_dssp             -------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--S
T ss_pred             -------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--C
Confidence                                                 22457888889999999999999999999994 7887765  6


Q ss_pred             CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038          586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  623 (717)
Q Consensus       586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~  623 (717)
                      +|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus       828 ~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            99999999999987777777666667777788777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=375.82  Aligned_cols=464  Identities=19%  Similarity=0.174  Sum_probs=293.3

Q ss_pred             cCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCC
Q 005038           16 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL   95 (717)
Q Consensus        16 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L   95 (717)
                      ..+...+++|+++|++++ +|..+.  ++|++|++++|.++ .++..+|.++++|++|++++|.+++ +....|.++++|
T Consensus        28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L  102 (562)
T 3a79_B           28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDL  102 (562)
T ss_dssp             -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTC
T ss_pred             cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCC
Confidence            344555888999888884 565554  78889999999888 5665578888889999998888874 333567888888


Q ss_pred             CEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCE
Q 005038           96 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLET  174 (717)
Q Consensus        96 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~  174 (717)
                      ++|++++|.++..                             |..  .+++|++|++++|.+.+ .+|.. +.++++|++
T Consensus       103 ~~L~Ls~N~l~~l-----------------------------p~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~  150 (562)
T 3a79_B          103 EYLDVSHNRLQNI-----------------------------SCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTF  150 (562)
T ss_dssp             CEEECTTSCCCEE-----------------------------CSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCE
T ss_pred             CEEECCCCcCCcc-----------------------------Ccc--ccccCCEEECCCCCccccCchHh-hcccCcccE
Confidence            8888888876521                             111  45678888888888774 23344 477888888


Q ss_pred             EEccCCcCcccCccCcCCCCCc--CEEEccCCcC--CccCCccccccCCCCcEEECCCCCCCccCCc-cccCCCCCCEEE
Q 005038          175 LFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILD  249 (717)
Q Consensus       175 L~l~~n~~~~~~~~~~~~~~~L--~~L~ls~n~i--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~  249 (717)
                      |++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+...-...-.++++.|.+.+.++. .+..+++|+.++
T Consensus       151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            88888887753   33334444  8888888877  5555544433111111335555555443332 234455555555


Q ss_pred             ccCCcccc----ccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccC
Q 005038          250 LSNNHLTG----EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN  325 (717)
Q Consensus       250 Ls~n~l~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  325 (717)
                      +++|....    ..... +.++++|+.++++++.+.+.                   .+.+. +..+ ..++|++|++++
T Consensus       228 l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~-------------------~~~~~-~~~~-~~~~L~~L~l~~  285 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWK-------------------CSVKL-FQFF-WPRPVEYLNIYN  285 (562)
T ss_dssp             EECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHH-------------------HHHHH-HHHH-TTSSEEEEEEEE
T ss_pred             ccccccccchHHHHHHH-HhccCcceEEEecCCcCcHH-------------------HHHHH-HHhh-hcccccEEEEec
Confidence            55553100    00111 12344444444443333211                   01100 1111 123555555555


Q ss_pred             CcCcCcCCccc-----CCCCCCCEEEccCCcccCCcc-cccC---CCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038          326 NSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFC---QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  396 (717)
Q Consensus       326 n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  396 (717)
                      |.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|++|++++|.+.                   
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-------------------  344 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-------------------  344 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-------------------
T ss_pred             cEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-------------------
Confidence            55554444443     3333333333333333  111 1111   1134555555555443                   


Q ss_pred             cccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccccc--chhccCCCCCCEEEccCCcCcc
Q 005038          397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV--SVQLCELNQLQLLDLSNNNLHG  474 (717)
Q Consensus       397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~  474 (717)
                          ...   ....+++|++|++++|.+++..|..+.++++|++|++++|++++..  +..+..+++|+.|++++|++++
T Consensus       345 ----~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          345 ----HMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             ----CCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             ----ccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence                111   1256788899999999888878888888899999999999888643  4568888999999999999887


Q ss_pred             CCCc-ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCC
Q 005038          475 PIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI  553 (717)
Q Consensus       475 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  553 (717)
                      .+|. .+..                                                     ++.|+.|++++|++++..
T Consensus       418 ~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          418 HAYDRTCAW-----------------------------------------------------AESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             CCSSCCCCC-----------------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred             ccChhhhcC-----------------------------------------------------cccCCEEECCCCCCCcch
Confidence            4443 2332                                                     337899999999988766


Q ss_pred             cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchh-hcCCCCCCEEeccCCcCeecCC
Q 005038          554 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       554 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      |..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.|.+|
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            65554  79999999999999 67777779999999999999999 45554 8999999999999999998776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.8e-40  Score=363.30  Aligned_cols=454  Identities=19%  Similarity=0.188  Sum_probs=311.1

Q ss_pred             CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038            1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF   80 (717)
Q Consensus         1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~   80 (717)
                      +++|+++ .||. .+.  ++|++|++++|.+++..|.+|.++++|++|+|++|+++ .++..+|.++++|++|++++|.+
T Consensus        38 ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           38 YSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             CTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcC
Confidence            5788888 5885 343  89999999999999888899999999999999999999 55444899999999999999999


Q ss_pred             cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 005038           81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE  160 (717)
Q Consensus        81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  160 (717)
                      + .++..   .+++|++|++++|.+...                           ..|..++.+++|++|++++|.+.+.
T Consensus       113 ~-~lp~~---~l~~L~~L~Ls~N~l~~l---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~  161 (562)
T 3a79_B          113 Q-NISCC---PMASLRHLDLSFNDFDVL---------------------------PVCKEFGNLTKLTFLGLSAAKFRQL  161 (562)
T ss_dssp             C-EECSC---CCTTCSEEECCSSCCSBC---------------------------CCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred             C-ccCcc---ccccCCEEECCCCCcccc---------------------------CchHhhcccCcccEEecCCCccccC
Confidence            8 45533   789999999999877531                           2345677788888888888887642


Q ss_pred             CChhhhhCCCCC--CEEEccCCcC--cccCccCcCCCC-CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCC---
Q 005038          161 FPNWLLENNTKL--ETLFLVNDSL--AGPFRLPIHSHK-RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD---  232 (717)
Q Consensus       161 ~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~---  232 (717)
                      .    +..+++|  +.|++++|.+  .+..+..+..+. ..-++++++|.+.+.++......+++|+.+++++|...   
T Consensus       162 ~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  237 (562)
T 3a79_B          162 D----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR  237 (562)
T ss_dssp             T----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred             c----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence            2    2344555  8999998888  666666666544 12256888898887788777777889999999988521   


Q ss_pred             -ccCCccccCCCCCCEEEccCCccccccchhhh--hCCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcCCcC
Q 005038          233 -GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA--VGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRF  304 (717)
Q Consensus       233 -~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l  304 (717)
                       ......+..+++|+.++++++.+.+.....+.  ...++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+
T Consensus       238 l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~  317 (562)
T 3a79_B          238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF  317 (562)
T ss_dssp             HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred             HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence             11233577889999999988877643222111  124578888888888776666655     3334444444444433


Q ss_pred             cccCc-cccc---CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038          305 VGEIP-QSLS---KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL  380 (717)
Q Consensus       305 ~~~~~-~~~~---~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  380 (717)
                        .+| ..+.   ...+|++|++++|.+.                        ...  ....+++|++|++++|.+.+..
T Consensus       318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~------------------------~~~--~~~~l~~L~~L~l~~n~l~~~~  369 (562)
T 3a79_B          318 --LFSKEALYSVFAEMNIKMLSISDTPFI------------------------HMV--CPPSPSSFTFLNFTQNVFTDSV  369 (562)
T ss_dssp             --SSCHHHHHHHHHTCCCSEEEEESSCCC------------------------CCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred             --ecChhhhhhhhccCcceEEEccCCCcc------------------------ccc--CccCCCCceEEECCCCccccch
Confidence              122 1111   1134555555555443                        111  0134455555555555554322


Q ss_pred             CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc--cchhhhCCCCCcEEEcCCCcccc-ccchhcc
Q 005038          381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS--IPDWVDGLSQLSHLILGHNNLEG-EVSVQLC  457 (717)
Q Consensus       381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~  457 (717)
                      +.                        .+..+++|++|++++|++++.  .|..+.++++|++|++++|++++ ..+..+.
T Consensus       370 ~~------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          370 FQ------------------------GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             TT------------------------TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             hh------------------------hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            11                        144555666666666666542  23456667777777777777776 3334466


Q ss_pred             CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038          458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  537 (717)
Q Consensus       458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  537 (717)
                      .+++|+.|++++|++++..|..+.                                                       +
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~l~-------------------------------------------------------~  450 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRCLP-------------------------------------------------------P  450 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSSCC-------------------------------------------------------T
T ss_pred             CcccCCEEECCCCCCCcchhhhhc-------------------------------------------------------C
Confidence            777788888888877654443221                                                       2


Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      .|+.|++++|+++ .+|..+..+++|++|+|++|+++++.+..|..+++|++|++++|++.+..+
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            6888999999888 567666799999999999999995444449999999999999999987665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7e-40  Score=353.11  Aligned_cols=373  Identities=20%  Similarity=0.205  Sum_probs=276.4

Q ss_pred             CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038          197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS  276 (717)
Q Consensus       197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~  276 (717)
                      +.++.+++.++ .+|. +   .+++++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35566666665 5554 2   25677777777777766677777777888888887777656666656667778888888


Q ss_pred             CcccCccCcccccCCCCCCeEECcCCcCcccCccc--ccCCCCCCEEEccCCcCcCcCCcc-cCCCCCCCEEEccCCccc
Q 005038          277 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS--LSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLE  353 (717)
Q Consensus       277 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~  353 (717)
                      +|.+.+..+..+.++++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            88777777777777788888888888777544433  777778888888888777665654 677778888888888777


Q ss_pred             CCcccccCCC--CCCCEEEccCCcCcccCCCcc---------ccccccEEeccCcccccccCcccc--CCCCcCCEEeCC
Q 005038          354 GPIPVEFCQL--DSLQILDISDNNISGSLPSCF---------HPLSIKQVHLSKNMLHGQLKRGTF--FNCSSLVTLDLS  420 (717)
Q Consensus       354 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~L~  420 (717)
                      +..+..+..+  .+|+.+++++|.+.+..+..+         ..++|+.|++++|.+.+..+....  ...++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7766666554  577777888777765444322         245677777777777654443311  123677788877


Q ss_pred             CCcCCcc----------cchhhhC--CCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038          421 YNRLNGS----------IPDWVDG--LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  488 (717)
Q Consensus       421 ~n~~~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  488 (717)
                      +|...+.          .+..+.+  .++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|..|..++    
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----  323 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT----  323 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----
Confidence            7754331          1122222  36899999999999888888888899999999999998877776665543    


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038          489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  568 (717)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  568 (717)
                                                                       .|+.|++++|++.+..|..|..+++|++|+|
T Consensus       324 -------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          324 -------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             -------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             -------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence                                                             7889999999998888888899999999999


Q ss_pred             CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       569 s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      ++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999988888899999999999999999876667778899999999999999988884

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.1e-39  Score=346.33  Aligned_cols=382  Identities=20%  Similarity=0.202  Sum_probs=293.0

Q ss_pred             EEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCC
Q 005038          149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM  228 (717)
Q Consensus       149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~  228 (717)
                      .++.+++.++ .+|. +   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555555 5554 2   366777888777777776777778888888888888777666666566677888888888


Q ss_pred             CCCCccCCccccCCCCCCEEEccCCccccccchh-hhhCCCCCCEEEccCcccCccCccc-ccCCCCCCeEECcCCcCcc
Q 005038          229 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH-LAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFVG  306 (717)
Q Consensus       229 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~  306 (717)
                      |.+.+..|..+.++++|++|++++|.+++.++.. .+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8887777888888888888888888887544432 3446788888888888888766665 6778888888888888887


Q ss_pred             cCcccccCC--CCCCEEEccCCcCcCcCCcc--------cCCCCCCCEEEccCCcccCCcccccCC---CCCCCEEEccC
Q 005038          307 EIPQSLSKC--SSLEGLYLNNNSLLGKIPRW--------LGNLTRLQYIIMPNNHLEGPIPVEFCQ---LDSLQILDISD  373 (717)
Q Consensus       307 ~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~~  373 (717)
                      ..+..+..+  .+|+.|++++|.+.+..+..        +..+++|+.|++++|.+.+..+..+..   .++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            777666655  67888888888877544433        235577888888888887666665543   37788888888


Q ss_pred             CcCcccCCCccccccccEEeccCcccccccCccccC--CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038          374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      |...+.......             +.. .....+.  ..++|++|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus       249 ~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSSFGHTN-------------FKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCCTTCCS-------------SCC-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccchhh-------------hcc-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            766543221111             100 1111122  236899999999999998899999999999999999999998


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  531 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (717)
                      .+..+..+++|++|++++|.+++..|..+..++                                               
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------------------------------  347 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-----------------------------------------------  347 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----------------------------------------------
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----------------------------------------------
Confidence            899999999999999999999877776665543                                               


Q ss_pred             ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038          532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                            +|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|
T Consensus       348 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          348 ------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                  79999999999998889999999999999999999998777788999999999999999998776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.4e-38  Score=335.25  Aligned_cols=302  Identities=31%  Similarity=0.415  Sum_probs=153.5

Q ss_pred             CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEE
Q 005038          194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL  273 (717)
Q Consensus       194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  273 (717)
                      ++|++|++++|.++ .++..    .++|++|++++|.+.+ +| .++++++|++|++++|.++ .+|..    ..+|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            45555555555554 22211    1466666666666664 45 4677777777777777776 45532    3467777


Q ss_pred             EccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCccc
Q 005038          274 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE  353 (717)
Q Consensus       274 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  353 (717)
                      ++++|.+++ ++ .+.++++|++|++++|.+.+ +|..   .++|++|++++|.+. .+|. +..+++|+.|++++|+++
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence            777777765 33 46677777777777777664 3322   246777777777666 4453 666677777777777666


Q ss_pred             CCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhh
Q 005038          354 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD  433 (717)
Q Consensus       354 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  433 (717)
                      + +|.   ..++|+.|++++|++.+ ++..                           .++|++|++++|.+++. +.   
T Consensus       251 ~-l~~---~~~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L~ls~N~l~~l-~~---  294 (454)
T 1jl5_A          251 T-LPD---LPPSLEALNVRDNYLTD-LPEL---------------------------PQSLTFLDVSENIFSGL-SE---  294 (454)
T ss_dssp             S-CCS---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEECCSSCCSEE-SC---
T ss_pred             c-ccc---cccccCEEECCCCcccc-cCcc---------------------------cCcCCEEECcCCccCcc-cC---
Confidence            4 232   23566666666666553 1111                           24556666666655531 11   


Q ss_pred             CCCCCcEEEcCCCccccccchhccCC-CCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccc
Q 005038          434 GLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL  512 (717)
Q Consensus       434 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (717)
                      ..++|+.|++++|++++..     .+ ++|+.|++++|++++ +|..                                 
T Consensus       295 ~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------------  335 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---------------------------------  335 (454)
T ss_dssp             CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---------------------------------
T ss_pred             cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---------------------------------
Confidence            1145666666666665321     22 366666666666654 2211                                 


Q ss_pred             cccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCC--CCCcCCCCCCCCCEE
Q 005038          513 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG--SIPSTFSNLKHVESL  590 (717)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L  590 (717)
                                             +++|+.|++++|++++ +|.   .+++|++|++++|++++  .+|..+..+      
T Consensus       336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------  382 (454)
T 1jl5_A          336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------  382 (454)
T ss_dssp             -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred             -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence                                   1246666666666663 343   35666777777776665  444443322      


Q ss_pred             ECCCCcCCccCchhhcCCCCCCEEeccCCcCee--cCCCC
Q 005038          591 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEW  628 (717)
Q Consensus       591 ~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~  628 (717)
                        +.|.+.+.+|..   +++|++|++++|++++  .+|.+
T Consensus       383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             --ECCC----------------------------------
T ss_pred             --hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence              234444444432   3566666666666665  55543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.4e-37  Score=327.54  Aligned_cols=385  Identities=24%  Similarity=0.281  Sum_probs=187.6

Q ss_pred             CCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCC-------------cCEEEccCCcCCccCC
Q 005038          145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-------------LRQLDVSNNNIRGHIP  211 (717)
Q Consensus       145 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-------------L~~L~ls~n~i~~~~~  211 (717)
                      +.|+++++++|.+ +.+|..+ +++++|++|++++|.+.+..|..++.+++             +++|++++|.++ .+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            3444444444444 3444443 44455555555555444444444444443             467777777766 333


Q ss_pred             ccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCC
Q 005038          212 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL  291 (717)
Q Consensus       212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  291 (717)
                      .    ..++|++|++++|.+++ +|..   .++|++|++++|.++ .++..    .++|++|++++|.+++ +| .+.++
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            3    13566777777766665 4432   356677777777666 33321    2466677777666664 33 46666


Q ss_pred             CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      ++|++|++++|++.+ +|..+   .+|++|++++|.+.+ +| .+..+++|+.|++++|.+++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            667777777666663 33322   366666666666654 34 46666666666666666664 2221   236666666


Q ss_pred             cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038          372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      ++|.+. .+|.....++|+.|++++|.+.+ ++.    ..++|++|++++|++.+ +|..   +++|+.|++++|++++.
T Consensus       223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            666665 33333335555555555555532 221    12566666666666664 3322   25666666666666642


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  531 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (717)
                      ..    -.++|+.|++++|++++...                                                      
T Consensus       293 ~~----~~~~L~~L~l~~N~l~~i~~------------------------------------------------------  314 (454)
T 1jl5_A          293 SE----LPPNLYYLNASSNEIRSLCD------------------------------------------------------  314 (454)
T ss_dssp             SC----CCTTCCEEECCSSCCSEECC------------------------------------------------------
T ss_pred             cC----cCCcCCEEECcCCcCCcccC------------------------------------------------------
Confidence            21    12466666666666543110                                                      


Q ss_pred             ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc--cCchhhcCCC
Q 005038          532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG--KIPHQLVELK  609 (717)
Q Consensus       532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~p~~~~~l~  609 (717)
                         ..++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..  
T Consensus       315 ---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--  381 (454)
T 1jl5_A          315 ---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--  381 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--
T ss_pred             ---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--
Confidence               01256667777777664 3432   466677777777766 3444   35667777777777765  44443322  


Q ss_pred             CCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCC
Q 005038          610 TLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC  647 (717)
Q Consensus       610 ~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c  647 (717)
                            ++.|.+.+.+|..   +.+++.+.+.+|+...
T Consensus       382 ------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          382 ------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             ------EECCC---------------------------
T ss_pred             ------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence                  3345566666653   3678888899998775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-37  Score=331.13  Aligned_cols=346  Identities=20%  Similarity=0.197  Sum_probs=249.9

Q ss_pred             cEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038          222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG  301 (717)
Q Consensus       222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  301 (717)
                      +.++.+++.++ .+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45566665555 3444332  46677777777776 44433444567777777777777666666666777777777777


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCC
Q 005038          302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP  381 (717)
Q Consensus       302 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  381 (717)
                      |.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.    
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence            7666555555666677777777777666666666666667777777766666665666666666666666666554    


Q ss_pred             CccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCC
Q 005038          382 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ  461 (717)
Q Consensus       382 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  461 (717)
                                          .++...|..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+
T Consensus       166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                233444778889999999999998877778888999999999998877677766666778


Q ss_pred             CCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccce
Q 005038          462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  541 (717)
Q Consensus       462 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  541 (717)
                      |+.|++++|.+++..+..+..                                                     ++.|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred             ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence            999999999887544344433                                                     347999


Q ss_pred             eeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcC
Q 005038          542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  621 (717)
Q Consensus       542 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l  621 (717)
                      |+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999888888899999999999999999988889999999999999999999977777888899999999999999


Q ss_pred             eecCCC-CCcccCCCCcccccCCcCCCCCC
Q 005038          622 SGEIPE-WKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       622 ~~~~p~-~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      .+.++. |+  +.......+.++...|..|
T Consensus       333 ~c~c~~~~~--~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLLWV--FRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGHHH--HTTTTSSCCTTCCCBEEES
T ss_pred             cCccchHhH--HhhhhccccCccCceeCCc
Confidence            876542 21  2223334556666555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=328.32  Aligned_cols=350  Identities=20%  Similarity=0.194  Sum_probs=300.2

Q ss_pred             cCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEc
Q 005038          196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL  275 (717)
Q Consensus       196 L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  275 (717)
                      -+.++.+++.++ .+|..+.   +++++|++++|.+.+..+..|.++++|++|++++|.+++..|. .+.++++|++|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC
Confidence            357889999887 7887654   5899999999999988889999999999999999999844444 4457999999999


Q ss_pred             cCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC
Q 005038          276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP  355 (717)
Q Consensus       276 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  355 (717)
                      ++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99999987777889999999999999999988888999999999999999999988888999999999999999999988


Q ss_pred             cccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCC
Q 005038          356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL  435 (717)
Q Consensus       356 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  435 (717)
                      .+..+..+++|+.|++++|.+.+.                        +...|..+++|++|++++|...+.++......
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence            778899999999999999987632                        22347788999999999998877777766666


Q ss_pred             CCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccccc
Q 005038          436 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ  515 (717)
Q Consensus       436 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (717)
                      .+|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+                                
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------------------------  271 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--------------------------------  271 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC--------------------------------
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc--------------------------------
Confidence            799999999999997777789999999999999999987777666543                                


Q ss_pred             ccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCC
Q 005038          516 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN  595 (717)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  595 (717)
                                           ++|+.|+|++|++.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus       272 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          272 ---------------------LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             ---------------------TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             ---------------------ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence                                 37999999999999988999999999999999999999888888999999999999999


Q ss_pred             cCCccCchhhcCCCCCCEEeccCCcCeecCCCC
Q 005038          596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  628 (717)
Q Consensus       596 ~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  628 (717)
                      ++.+..+..+ -......+++.++...+.-|..
T Consensus       331 ~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          331 PLACDCRLLW-VFRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             CEECSGGGHH-HHTTTTSSCCTTCCCBEEESGG
T ss_pred             CccCccchHh-HHhhhhccccCccCceeCCchH
Confidence            9986544321 1223444567777777776754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.2e-35  Score=314.94  Aligned_cols=346  Identities=27%  Similarity=0.369  Sum_probs=238.4

Q ss_pred             CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038          169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL  248 (717)
Q Consensus       169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  248 (717)
                      +++++.|++.++.+... + .+..+++|++|++++|.+++ ++.  ...+++|++|++++|.+.+..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            45677777777776542 2 35667777777777777763 332  3346667777777776664433  6666677777


Q ss_pred             EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038          249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      ++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+++ |.+.+..  .+..+++|++|++++|.+
T Consensus       118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            77766666 3433  33566666666666666542  235566666666664 2333221  255666666666666665


Q ss_pred             cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCcccc
Q 005038          329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF  408 (717)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  408 (717)
                      .+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.                       + +  ..+
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~--~~l  239 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-I--GTL  239 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-C--GGG
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-c--hhh
Confidence            532  235556666666666666654433  444556666666655544                       2 1  126


Q ss_pred             CCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038          409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  488 (717)
Q Consensus       409 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  488 (717)
                      ..+++|++|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++.+..+  +..      
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------  307 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------  307 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence            677889999999998886544  7888999999999999886554  7888999999999998875433  222      


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038          489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  568 (717)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  568 (717)
                                                                     +++|+.|++++|++++..|  +..+++|++|++
T Consensus       308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                                           3479999999999987655  788999999999


Q ss_pred             CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038          569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       569 s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      ++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999865  468899999999999999987766  78899999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-34  Score=310.70  Aligned_cols=345  Identities=26%  Similarity=0.362  Sum_probs=263.6

Q ss_pred             CCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcE
Q 005038          144 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYV  223 (717)
Q Consensus       144 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~  223 (717)
                      +++++.|+++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +.  ...+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh--hcCCCCCCE
Confidence            456777777777776 4554  3567888888888887776543  77788888888888888743 33  445778888


Q ss_pred             EECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCc
Q 005038          224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR  303 (717)
Q Consensus       224 L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  303 (717)
                      |++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|++|+++ +.+.+.  ..+..+++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            8888888875433  888999999999999887 5553  4468999999996 445433  337889999999999998


Q ss_pred             CcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCc
Q 005038          304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC  383 (717)
Q Consensus       304 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  383 (717)
                      +.+.  ..+..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            8754  347889999999999999886554  67789999999999998864  457788899999999888763211  


Q ss_pred             cccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCC
Q 005038          384 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ  463 (717)
Q Consensus       384 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  463 (717)
                                              +..+++|++|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|+
T Consensus       261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence                                    5567788888888888875443  7778888888888888876544  67788888


Q ss_pred             EEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceee
Q 005038          464 LLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD  543 (717)
Q Consensus       464 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  543 (717)
                      .|++++|++++..|  +..                                                     ++.|+.|+
T Consensus       313 ~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L~  337 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRLF  337 (466)
T ss_dssp             EEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEEE
T ss_pred             EEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEeE
Confidence            88888888775443  221                                                     34788888


Q ss_pred             CCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc
Q 005038          544 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG  599 (717)
Q Consensus       544 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~  599 (717)
                      +++|++++.  ..+..+++|++|++++|++++..|  +..+++|++|++++|++++
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            888888865  468888899999999999987766  7888999999999998885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-35  Score=316.28  Aligned_cols=363  Identities=19%  Similarity=0.167  Sum_probs=255.3

Q ss_pred             CCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCcc
Q 005038          134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK  213 (717)
Q Consensus       134 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  213 (717)
                      .+..+..+..+++|++|++++|.+++ +| . +..+++|++|++++|.+.+.   +++.+++|++|++++|.+++ ++  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred             CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--
Confidence            33445567788899999999998884 45 3 47888999999999988874   37788889999999988874 33  


Q ss_pred             ccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCC
Q 005038          214 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN  293 (717)
Q Consensus       214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  293 (717)
                       ...+++|++|++++|.+++. |  +..+++|++|++++|.+++ ++   +..+++|++|++++|...+..  .+..+++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCc
Confidence             33477888888888888763 3  7788888888888888873 43   335788888888888544333  4667788


Q ss_pred             CCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038          294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  373 (717)
Q Consensus       294 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  373 (717)
                      |++|++++|++++. |  +..+++|+.|++++|.+.+.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++
T Consensus       172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            88888888887753 3  67778888888888887754   36777888888888888876 34  66777888888888


Q ss_pred             CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038          374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  453 (717)
Q Consensus       374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  453 (717)
                      |++.+..+  ..+++|+.++++.|               +|+.|++++|.+.+.+|  +..+++|+.|++++|...+..|
T Consensus       243 N~l~~~~~--~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          243 NPLTELDV--STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             SCCSCCCC--TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CcCCCcCH--HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence            87765432  12334444444332               33445555555444443  3445555555555555444443


Q ss_pred             hhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecc
Q 005038          454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  533 (717)
Q Consensus       454 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (717)
                      .   ..++|+.|++++|                                                               
T Consensus       304 ~---~~~~L~~L~l~~~---------------------------------------------------------------  317 (457)
T 3bz5_A          304 C---QAAGITELDLSQN---------------------------------------------------------------  317 (457)
T ss_dssp             C---TTCCCSCCCCTTC---------------------------------------------------------------
T ss_pred             c---CCCcceEechhhc---------------------------------------------------------------
Confidence            2   2334444444433                                                               


Q ss_pred             ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038          534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  613 (717)
Q Consensus       534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~  613 (717)
                         +.|+.|++++|++++.   .++.+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|+.
T Consensus       318 ---~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~  378 (457)
T 3bz5_A          318 ---PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK  378 (457)
T ss_dssp             ---TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred             ---ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence               3688999999999974   38889999999999999985        24566778999998865     35567888


Q ss_pred             EeccCCcCeecCCCC
Q 005038          614 FSVAYNNLSGEIPEW  628 (717)
Q Consensus       614 L~l~~N~l~~~~p~~  628 (717)
                      +++++|+++|.+|..
T Consensus       379 l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPD  393 (457)
T ss_dssp             BCCBTTBEEEECCTT
T ss_pred             cccccCcEEEEcChh
Confidence            999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.2e-35  Score=307.16  Aligned_cols=335  Identities=22%  Similarity=0.213  Sum_probs=248.9

Q ss_pred             CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038          242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  321 (717)
Q Consensus       242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  321 (717)
                      ++++++|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467778888888777 6777766667888888888888877766777788888888888888877777777788888888


Q ss_pred             EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc
Q 005038          322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  401 (717)
Q Consensus       322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  401 (717)
                      ++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..  ....++|+.+++++|.+.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence            88888877544445677788888888888887777777778888888888888776542  2335677777777776643


Q ss_pred             ccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038          402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD  481 (717)
Q Consensus       402 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  481 (717)
                            +...++|++|++++|.+... +.  ...++|+.|++++|++++.  ..+..+++|+.|++++|.+.+..|..+.
T Consensus       201 ------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          201 ------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             ------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence                  33346788888888888754 32  2347888888888888754  4677888888888888888776666555


Q ss_pred             cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038          482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  561 (717)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  561 (717)
                      .++                                                     +|+.|++++|++++ +|..+..++
T Consensus       270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred             ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence            433                                                     68888888888874 466667788


Q ss_pred             cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCccccc
Q 005038          562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE  641 (717)
Q Consensus       562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~  641 (717)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++.. |  +..+++|+.|++++|++.+....  .-+..+....+.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  369 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  369 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence            9999999999888 5666778888999999999998754 3  66788899999999999875432  233455556677


Q ss_pred             CCcCCCCCC
Q 005038          642 GNTFLCGLP  650 (717)
Q Consensus       642 ~n~~~c~~~  650 (717)
                      +++..|.++
T Consensus       370 ~~~~~c~~~  378 (390)
T 3o6n_A          370 DADQHCKID  378 (390)
T ss_dssp             CCCSCCCTT
T ss_pred             ccCceeccc
Confidence            777777754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-34  Score=306.71  Aligned_cols=360  Identities=20%  Similarity=0.205  Sum_probs=243.0

Q ss_pred             cccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCC
Q 005038           14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS   93 (717)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~   93 (717)
                      +++++++|++|++++|.+++. | .+..+++|++|++++|.++ .++   +..+++|++|++++|.+++.    .+++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~----~~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL----DVTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC----CCTTCT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee----ecCCCC
Confidence            577788888888888888854 4 6788888888888888887 343   77788888888888887752    267778


Q ss_pred             CCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCC
Q 005038           94 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE  173 (717)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  173 (717)
                      +|++|++++|.+++.                             +  +..+++|++|++++|.+++ ++   +..+++|+
T Consensus       107 ~L~~L~L~~N~l~~l-----------------------------~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~  151 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKL-----------------------------D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLT  151 (457)
T ss_dssp             TCCEEECCSSCCSCC-----------------------------C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCC
T ss_pred             cCCEEECCCCcCCee-----------------------------c--CCCCCcCCEEECCCCccce-ec---cccCCcCC
Confidence            888888888776531                             1  3344566666666666653 22   24566666


Q ss_pred             EEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038          174 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN  253 (717)
Q Consensus       174 ~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n  253 (717)
                      +|++++|...+.+  .+..+++|++|++++|.+++ ++   ...+++|+.|++++|.+++.   .+..+++|++|++++|
T Consensus       152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred             EEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence            6666666444333  35566677777777777663 33   23356677777777766653   2666777777777777


Q ss_pred             ccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCC
Q 005038          254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP  333 (717)
Q Consensus       254 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  333 (717)
                      +++ .+|   +..+++|++|++++|.+++..   +..+++|+.|++++|              +|+.|++++|...+.+|
T Consensus       223 ~l~-~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          223 KLT-EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred             ccc-ccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence            776 355   335677777777777776543   345566777666554              34556666666555544


Q ss_pred             cccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCc
Q 005038          334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS  413 (717)
Q Consensus       334 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  413 (717)
                        +..+++|+.|++++|...+.+|.   ..+.|+.+++++|            ++|+.|++++|.+.+ ++   +..+++
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~---l~~l~~  340 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD---VSHNTK  340 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC---CTTCTT
T ss_pred             --ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc---cccCCc
Confidence              35567777777777766555553   3345566656554            367777777777765 32   778899


Q ss_pred             CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038          414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  482 (717)
Q Consensus       414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  482 (717)
                      |+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|..+++++|+++|.+|..+..
T Consensus       341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            9999999998875        35667778888888865     24556788899999999988876544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-34  Score=316.48  Aligned_cols=335  Identities=23%  Similarity=0.218  Sum_probs=253.8

Q ss_pred             CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038          242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  321 (717)
Q Consensus       242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  321 (717)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777777777776 6676666667777777777777777666777777777777777777777766777777777777


Q ss_pred             EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc
Q 005038          322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  401 (717)
Q Consensus       322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  401 (717)
                      ++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..  ...+++|+.+++++|.+.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence            77777777555555677777788888777777777777777777888888777776542  2235677777777776643


Q ss_pred             ccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038          402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD  481 (717)
Q Consensus       402 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  481 (717)
                            +...++|++|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|.
T Consensus       207 ------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          207 ------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             ------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                  33456788899998888754332 2  3688999999998885  35678888999999999988877776665


Q ss_pred             cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038          482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  561 (717)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  561 (717)
                      .++                                                     +|+.|+|++|.+++ +|..+..++
T Consensus       276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred             Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence            543                                                     78899999998885 566777889


Q ss_pred             cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCccccc
Q 005038          562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE  641 (717)
Q Consensus       562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~  641 (717)
                      +|++|+|++|.++ .+|..+..+++|++|+|++|++++. |  +..+++|+.|++++|++.|..+.  ..+..+....+.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  375 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  375 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence            9999999999999 6777888899999999999999854 3  66788999999999999976433  234556666778


Q ss_pred             CCcCCCCCC
Q 005038          642 GNTFLCGLP  650 (717)
Q Consensus       642 ~n~~~c~~~  650 (717)
                      +++..|+.+
T Consensus       376 ~~~~~C~~~  384 (597)
T 3oja_B          376 DADQHCKID  384 (597)
T ss_dssp             CCCCCCCTT
T ss_pred             cccccCCcc
Confidence            888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-33  Score=286.22  Aligned_cols=260  Identities=35%  Similarity=0.582  Sum_probs=210.4

Q ss_pred             CCCCEEEccCCcCcC--cCCcccCCCCCCCEEEccC-CcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEE
Q 005038          316 SSLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV  392 (717)
Q Consensus       316 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  392 (717)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|           
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-----------  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence            356666666666665  5666666667777777763 66666666667777777777777766653322           


Q ss_pred             eccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-CCCEEEccCCc
Q 005038          393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN  471 (717)
Q Consensus       393 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~  471 (717)
                                  .. |..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|.
T Consensus       119 ------------~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          119 ------------DF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ------------GG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ------------HH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                        22 56677788888888888777788888888888888888888877888888887 88888888888


Q ss_pred             CccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC
Q 005038          472 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG  551 (717)
Q Consensus       472 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  551 (717)
                      +++..|..+...                                                      .|+.|++++|++++
T Consensus       186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred             eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence            887777665442                                                      28889999999988


Q ss_pred             CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcc
Q 005038          552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ  631 (717)
Q Consensus       552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  631 (717)
                      ..|..+..+++|++|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            8899999999999999999999976665 888999999999999999999999999999999999999999999997 78


Q ss_pred             cCCCCcccccCCcCCCCCCCCCCC
Q 005038          632 FATFNESSYEGNTFLCGLPLPICR  655 (717)
Q Consensus       632 ~~~l~~~~~~~n~~~c~~~l~~C~  655 (717)
                      +.+++.+.+.+||++|+.|++.|.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccChHHhcCCCCccCCCCCCCC
Confidence            999999999999999999887773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-32  Score=281.79  Aligned_cols=304  Identities=23%  Similarity=0.336  Sum_probs=201.0

Q ss_pred             CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038          218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  297 (717)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  297 (717)
                      ++++++|+++++.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5667777777776653 23 2666677777777777666 4444  34566777777777766542  346666667777


Q ss_pred             ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038          298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ++++|.+.+.. . +..+++|++|++++|...... ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            77766666432 2 566666666666666444322 235666666666666666654332  555666666666666554


Q ss_pred             ccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038          378 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC  457 (717)
Q Consensus       378 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  457 (717)
                      +                        ++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+  +.
T Consensus       191 ~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 D------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             C------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             c------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            2                        111  5566778888888887775443  6777888888888888875544  77


Q ss_pred             CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038          458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  537 (717)
Q Consensus       458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  537 (717)
                      .+++|++|++++|.+++.  ..+.                                                     .++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~-----------------------------------------------------~l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVK-----------------------------------------------------DLT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGT-----------------------------------------------------TCT
T ss_pred             cCCCCCEEECCCCccCCC--hhHh-----------------------------------------------------cCC
Confidence            788888888888877642  1111                                                     134


Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      +|+.|++++|++++.  ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            688888888887754  357778888888888888887777778888888888888888876555  7778888888888


Q ss_pred             CCcCe
Q 005038          618 YNNLS  622 (717)
Q Consensus       618 ~N~l~  622 (717)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-32  Score=288.72  Aligned_cols=312  Identities=20%  Similarity=0.223  Sum_probs=269.3

Q ss_pred             CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038          267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  346 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  346 (717)
                      +++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            68999999999999977666688999999999999999988888999999999999999999988888899999999999


Q ss_pred             ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC
Q 005038          347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  425 (717)
Q Consensus       347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~  425 (717)
                      +++|.++...+..|..+++|++|++++|.+.+..+..+. .++|+.|++++|.+.+. +   +..+++|++|++++|.+.
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccc
Confidence            999999976666689999999999999999987776554 78999999999998653 2   556789999999999887


Q ss_pred             cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038          426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  505 (717)
Q Consensus       426 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (717)
                      +     +...++|+.|++++|.+.....   ...++|+.|++++|.+++.  ..+.                        
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~------------------------  245 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL------------------------  245 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG------------------------
T ss_pred             c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc------------------------
Confidence            4     2345789999999999986533   2357999999999998753  2222                        


Q ss_pred             ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038          506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  585 (717)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  585 (717)
                                                   .++.|+.|++++|.+.+..|..|..+++|++|+|++|++++ +|..+..++
T Consensus       246 -----------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          246 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred             -----------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence                                         24589999999999998889999999999999999999995 566778899


Q ss_pred             CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      +|++|++++|+++ .+|..+..+++|+.|++++|+++.. |  +..+.+++.+.+.+||+.|++.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence            9999999999998 6777888999999999999999854 4  4677889999999999999764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-31  Score=276.50  Aligned_cols=308  Identities=26%  Similarity=0.356  Sum_probs=251.4

Q ss_pred             CcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCC
Q 005038          189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV  268 (717)
Q Consensus       189 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  268 (717)
                      .+..+++|++|+++++.+. .++.  ...+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence            3456789999999999997 5553  4458999999999999986443  899999999999999998 5653  45799


Q ss_pred             CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038          269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  348 (717)
Q Consensus       269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  348 (717)
                      +|++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            99999999999986543  8899999999999997664544 48999999999999999875443  8889999999999


Q ss_pred             CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCccc
Q 005038          349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  428 (717)
Q Consensus       349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  428 (717)
                      +|.+.+..+  +..+++|+.+++++|.+.+..+                          +..+++|++|++++|.+++..
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCc
Confidence            999986544  7889999999999998763211                          556788888888888888544


Q ss_pred             chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccc
Q 005038          429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  508 (717)
Q Consensus       429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (717)
                      +  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+.                           
T Consensus       238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------------------  284 (347)
T 4fmz_A          238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN---------------------------  284 (347)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG---------------------------
T ss_pred             c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc---------------------------
Confidence            3  77888999999999988854  4578888999999999988653  1122                           


Q ss_pred             cccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC
Q 005038          509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE  588 (717)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  588 (717)
                                                .+++|+.|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+
T Consensus       285 --------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          285 --------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             --------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             --------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence                                      23479999999999988888889999999999999999997655  88899999


Q ss_pred             EEECCCCcCC
Q 005038          589 SLDLSNNKLN  598 (717)
Q Consensus       589 ~L~L~~N~i~  598 (717)
                      +|++++|+++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.4e-32  Score=298.37  Aligned_cols=311  Identities=20%  Similarity=0.234  Sum_probs=271.0

Q ss_pred             CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038          267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  346 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  346 (717)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            67899999999999987777788999999999999999988888999999999999999999988888899999999999


Q ss_pred             ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC
Q 005038          347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  425 (717)
Q Consensus       347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~  425 (717)
                      +++|.+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+.+. +   +..+++|+.|++++|.+.
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence            999999977777789999999999999999988887665 78999999999998653 2   556789999999999887


Q ss_pred             cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038          426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  505 (717)
Q Consensus       426 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (717)
                      +     +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  ..+..                       
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~-----------------------  252 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN-----------------------  252 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence            4     344578999999999998554432   36899999999998752  22222                       


Q ss_pred             ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038          506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  585 (717)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  585 (717)
                                                    ++.|+.|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..++
T Consensus       253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                                          4489999999999999889999999999999999999995 577778899


Q ss_pred             CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCC
Q 005038          586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL  649 (717)
Q Consensus       586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~  649 (717)
                      +|++|+|++|+++ .+|..+..+++|+.|++++|++++. |  +..+..+..+.+.+||+.|++
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence            9999999999998 6888889999999999999999865 3  356788899999999999976

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1.7e-30  Score=266.63  Aligned_cols=291  Identities=23%  Similarity=0.304  Sum_probs=214.5

Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  323 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  323 (717)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5667777777776 666544   356777788777777766667777888888888888887776777888888888888


Q ss_pred             cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038          324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  403 (717)
Q Consensus       324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  403 (717)
                      ++|.+. .+|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+...                      ..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  162 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  162 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence            888776 4454443  6788888888888877777788888888888888876521                      11


Q ss_pred             CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038          404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  483 (717)
Q Consensus       404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  483 (717)
                      ....+..+++|++|++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            22236677788888888888774 343332  778888888888887777788888888888888888876665555443


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038          484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  563 (717)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  563 (717)
                                                                           ++|+.|++++|+++ .+|..+..+++|
T Consensus       240 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 -----------------------------------------------------PHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             -----------------------------------------------------TTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             -----------------------------------------------------CCCCEEECCCCcCc-cCChhhccCCCc
Confidence                                                                 36888888888887 667778888899


Q ss_pred             CeEeCCCcccCCCCCcCCCC------CCCCCEEECCCCcCCc--cCchhhcCCCCCCEEeccCCc
Q 005038          564 QTLNLSHNNLTGSIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN  620 (717)
Q Consensus       564 ~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~i~~--~~p~~~~~l~~L~~L~l~~N~  620 (717)
                      ++|++++|++++..+..|..      .++|+.|++++|++..  ..|..|..+.+++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999998777666754      3788899999998863  567788888999999998884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=7.3e-31  Score=269.48  Aligned_cols=290  Identities=22%  Similarity=0.292  Sum_probs=209.3

Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  323 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  323 (717)
                      +++.++++++.++ .+|..+   .+++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5777888888777 677655   357888888888888777777888888888888888888777778888888888888


Q ss_pred             cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038          324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  403 (717)
Q Consensus       324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  403 (717)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+...                      ..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            888877 4554443  7888888888888877667788888888888888877521                      01


Q ss_pred             CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038          404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  483 (717)
Q Consensus       404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  483 (717)
                      ....+..+ +|++|++++|.+++ +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            11224444 67777777777664 333332  577777777777776666677777777777777777766555544432


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038          484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  563 (717)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  563 (717)
                                                                           ++|+.|++++|+++ .+|..+..+++|
T Consensus       241 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          241 -----------------------------------------------------PTLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             -----------------------------------------------------TTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             -----------------------------------------------------CCCCEEECCCCcCe-ecChhhhcCccC
Confidence                                                                 26777778877777 566778888888


Q ss_pred             CeEeCCCcccCCCCCcCCCCC------CCCCEEECCCCcCC--ccCchhhcCCCCCCEEeccCCc
Q 005038          564 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN  620 (717)
Q Consensus       564 ~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~L~~N~i~--~~~p~~~~~l~~L~~L~l~~N~  620 (717)
                      ++|++++|++++..+..|...      ++|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888887666666553      67888888888887  5677788888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.5e-34  Score=307.63  Aligned_cols=256  Identities=22%  Similarity=0.174  Sum_probs=153.7

Q ss_pred             CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc----cCCccccCCCCCCEEEccCCccccccchhhhhCCC-
Q 005038          194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV-  268 (717)
Q Consensus       194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-  268 (717)
                      ++|++|++++|.++......++..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567777777777644333434556777777777777763    34566777888888888888887555556665565 


Q ss_pred             ---CCCEEEccCcccCc----cCcccccCCCCCCeEECcCCcCcccCcccc-----cCCCCCCEEEccCCcCcCcC----
Q 005038          269 ---NLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLLGKI----  332 (717)
Q Consensus       269 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~----  332 (717)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888774    346677788888888888888765433322     23557888888888776533    


Q ss_pred             CcccCCCCCCCEEEccCCcccCCcccccC-----CCCCCCEEEccCCcCcccC----CCcc-ccccccEEeccCcccccc
Q 005038          333 PRWLGNLTRLQYIIMPNNHLEGPIPVEFC-----QLDSLQILDISDNNISGSL----PSCF-HPLSIKQVHLSKNMLHGQ  402 (717)
Q Consensus       333 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~  402 (717)
                      +..+..+++|+.|++++|.+.+..+..+.     ..++|++|++++|.+.+..    +..+ ..++|+.|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44555677888888888877644333332     2557778888777765421    1111 133444444444443221


Q ss_pred             ----cCccccCCCCcCCEEeCCCCcCCcc----cchhhhCCCCCcEEEcCCCccc
Q 005038          403 ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLE  449 (717)
Q Consensus       403 ----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~  449 (717)
                          +....+..+++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence                1111122344555555555554432    2333444455555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.2e-31  Score=270.06  Aligned_cols=252  Identities=31%  Similarity=0.501  Sum_probs=153.1

Q ss_pred             CCCeEECcCCcCcc--cCcccccCCCCCCEEEccC-CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEE
Q 005038          293 NLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL  369 (717)
Q Consensus       293 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  369 (717)
                      ++++|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45555555555554  4455555555555555553 55555555555555555555555555555555555555555555


Q ss_pred             EccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCC-CCcEEEcCCCcc
Q 005038          370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNL  448 (717)
Q Consensus       370 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l  448 (717)
                      ++++|.+.+..|.                       . +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus       131 ~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            5555555432221                       1 34445555555555555555555555554 556666666665


Q ss_pred             ccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccce
Q 005038          449 EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA  528 (717)
Q Consensus       449 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (717)
                      ++..|..+..++ |+.|++++|.+++..|..+..++                                            
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------  221 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence            555555555554 66666666665555444443322                                            


Q ss_pred             eeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC
Q 005038          529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  608 (717)
Q Consensus       529 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l  608 (717)
                               .|+.|++++|++++..|. +..+++|++|++++|++++.+|..|..+++|++|++++|++++.+|+. ..+
T Consensus       222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                     566666666666644443 667778888888888888778888888888888888888888777765 677


Q ss_pred             CCCCEEeccCCcCeec
Q 005038          609 KTLEVFSVAYNNLSGE  624 (717)
Q Consensus       609 ~~L~~L~l~~N~l~~~  624 (717)
                      ++|+.+++++|+..+.
T Consensus       291 ~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGSCGGGTCSSSEEES
T ss_pred             cccChHHhcCCCCccC
Confidence            8888888888874433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.2e-30  Score=263.82  Aligned_cols=288  Identities=21%  Similarity=0.239  Sum_probs=179.6

Q ss_pred             CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038          269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  348 (717)
Q Consensus       269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  348 (717)
                      +++.++++++.++. +|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            45556665555542 33332  2455555555555554444455555555555555555554444455555555555555


Q ss_pred             CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc--
Q 005038          349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--  426 (717)
Q Consensus       349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--  426 (717)
                      +|.++. +|..+.  ++|++|++++|.+.                        .++...|..+++|++|++++|.+..  
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIR------------------------KVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCC------------------------CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccC------------------------ccCHhHhCCCccCCEEECCCCccccCC
Confidence            555442 222221  34444444444433                        2334447777888888888888753  


Q ss_pred             ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcc
Q 005038          427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE  506 (717)
Q Consensus       427 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (717)
                      ..+..+..+ +|+.|++++|++++. |..+.  ++|+.|++++|.+++..+..+..++                      
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~----------------------  217 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYS----------------------  217 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT----------------------
T ss_pred             CCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCC----------------------
Confidence            556666666 788888888888753 33332  6788888888888766665554433                      


Q ss_pred             cccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCC
Q 005038          507 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKH  586 (717)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  586 (717)
                                                     .|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++
T Consensus       218 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          218 -------------------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             -------------------------------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             -------------------------------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence                                           6788888888888777777888888888888888887 66777788888


Q ss_pred             CCEEECCCCcCCccCchhhcC------CCCCCEEeccCCcCe--ecCCCCCcccCCCCcccccCCc
Q 005038          587 VESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLS--GEIPEWKAQFATFNESSYEGNT  644 (717)
Q Consensus       587 L~~L~L~~N~i~~~~p~~~~~------l~~L~~L~l~~N~l~--~~~p~~~~~~~~l~~~~~~~n~  644 (717)
                      |++|++++|++++..+..|..      ..+|+.|++++|++.  +..|..+..+..++.+.+.+|.
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888887666665554      356788888888876  4555556666777777666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.9e-34  Score=305.66  Aligned_cols=391  Identities=19%  Similarity=0.110  Sum_probs=252.5

Q ss_pred             CCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCccc----CccCcCCCCCcCEEEccCCcCCccCCccccccCC-
Q 005038          145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP-  219 (717)
Q Consensus       145 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~-  219 (717)
                      ++|++|+++++.+++.....++..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            35666777777666443344456677777777777776642    3445666778888888888876544545555454 


Q ss_pred             ---CCcEEECCCCCCCc----cCCccccCCCCCCEEEccCCccccccchhhhh----CCCCCCEEEccCcccCccC----
Q 005038          220 ---SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQFLALSNNNLQGHL----  284 (717)
Q Consensus       220 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~~~~L~~L~L~~n~i~~~~----  284 (717)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888774    45778888999999999999887544444332    2457999999988887643    


Q ss_pred             cccccCCCCCCeEECcCCcCcccCccccc-----CCCCCCEEEccCCcCcCc----CCcccCCCCCCCEEEccCCcccCC
Q 005038          285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLEGP  355 (717)
Q Consensus       285 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~  355 (717)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44555678888888888887654443332     356888888888887753    355666778888888888877643


Q ss_pred             c-----ccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccch
Q 005038          356 I-----PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  430 (717)
Q Consensus       356 ~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  430 (717)
                      .     +..+..+++|++|++++|.++.....                   .++. .+..+++|++|++++|.+.+..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG-------------------DLCR-VLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-------------------HHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-------------------HHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence            2     22233567788888877776532100                   0222 255678888999998888654443


Q ss_pred             hhhC-----CCCCcEEEcCCCccccc----cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhh
Q 005038          431 WVDG-----LSQLSHLILGHNNLEGE----VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEI  501 (717)
Q Consensus       431 ~~~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (717)
                      .+..     .++|++|++++|.+++.    .+..+..+++|+.|++++|.+++..+..+...-                 
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------  365 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-----------------  365 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-----------------
Confidence            3332     36888999998888765    345566778888888888887643322211100                 


Q ss_pred             hhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC----CCcccccCCccCCeEeCCCcccCCCC
Q 005038          502 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG----HIPPQIGNLTRIQTLNLSHNNLTGSI  577 (717)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~  577 (717)
                                                     ....+.|++|++++|++++    .+|..+..+++|++|++++|++++..
T Consensus       366 -------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          366 -------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             -------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             -------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence                                           0012357777777777764    45666667777777777777776431


Q ss_pred             CcC----C-CCCCCCCEEECCCCcCCccCch
Q 005038          578 PST----F-SNLKHVESLDLSNNKLNGKIPH  603 (717)
Q Consensus       578 p~~----~-~~l~~L~~L~L~~N~i~~~~p~  603 (717)
                      ...    + .....|+.|++.++.+....++
T Consensus       415 ~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          415 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            111    1 1234566777776666544333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-29  Score=260.28  Aligned_cols=267  Identities=18%  Similarity=0.213  Sum_probs=161.2

Q ss_pred             CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038          317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  396 (717)
Q Consensus       317 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  396 (717)
                      ++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.......+  .+|+.|++++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~  130 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE  130 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence            34444444444443333344444444444444444444444444444444444444444432111111  2344444444


Q ss_pred             cccccccCccccCCCCcCCEEeCCCCcCCc--ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCcc
Q 005038          397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG  474 (717)
Q Consensus       397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  474 (717)
                      |.+. .++...|..+++|++|++++|.+..  ..+..+.++++|++|++++|.++.. |..+.  ++|+.|++++|.+++
T Consensus       131 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCE
T ss_pred             Cccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCc
Confidence            4442 2333346777888888888887753  5566777788888888888887743 33322  678888888888776


Q ss_pred             CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc
Q 005038          475 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP  554 (717)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  554 (717)
                      ..|..+..++                                                     +|+.|++++|++++..+
T Consensus       207 ~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          207 VDAASLKGLN-----------------------------------------------------NLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             ECTGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred             cCHHHhcCCC-----------------------------------------------------CCCEEECCCCcCceeCh
Confidence            6665554432                                                     67888888888877666


Q ss_pred             ccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcC------CCCCCEEeccCCcCee--cCC
Q 005038          555 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIP  626 (717)
Q Consensus       555 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~------l~~L~~L~l~~N~l~~--~~p  626 (717)
                      ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..      ...|+.|++++|++..  ..|
T Consensus       234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence            67778888888888888887 66777777888888888888887666555543      3667788888887763  334


Q ss_pred             CCCcccCCCCcccccCC
Q 005038          627 EWKAQFATFNESSYEGN  643 (717)
Q Consensus       627 ~~~~~~~~l~~~~~~~n  643 (717)
                      ..+..+..++.+.+++|
T Consensus       313 ~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGTTCCCGGGEEC---
T ss_pred             cccccccceeEEEeccc
Confidence            44555556666666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=261.04  Aligned_cols=252  Identities=23%  Similarity=0.253  Sum_probs=203.8

Q ss_pred             CCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEcc
Q 005038          293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS  372 (717)
Q Consensus       293 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  372 (717)
                      ..+.++.++..++ .+|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3567777777777 4555444  578888888888887777788888888888888888887777788888888888888


Q ss_pred             CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCC-ccccc
Q 005038          373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGE  451 (717)
Q Consensus       373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~  451 (717)
                      +|+++.                        ++...|..+++|++|++++|.+....+..|..+++|++|++++| .+...
T Consensus       121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence            887763                        33344778899999999999998777778889999999999984 55555


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  531 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (717)
                      .+..|..+++|+.|++++|.++.. |. +.                                                  
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~--------------------------------------------------  204 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LT--------------------------------------------------  204 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSC-CC-CT--------------------------------------------------
T ss_pred             CcchhhcccccCeecCCCCcCccc-cc-cC--------------------------------------------------
Confidence            566788899999999999988633 21 11                                                  


Q ss_pred             ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038          532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  611 (717)
Q Consensus       532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L  611 (717)
                         .+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..++.+..+++|
T Consensus       205 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          205 ---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ---TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ---CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence               23478999999999988888889999999999999999998888889999999999999999997777788889999


Q ss_pred             CEEeccCCcCeecCC
Q 005038          612 EVFSVAYNNLSGEIP  626 (717)
Q Consensus       612 ~~L~l~~N~l~~~~p  626 (717)
                      +.|++++|++.+.+.
T Consensus       282 ~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CEEECCSSCEECSST
T ss_pred             CEEEcCCCCccCCCC
Confidence            999999999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3e-28  Score=261.07  Aligned_cols=252  Identities=21%  Similarity=0.219  Sum_probs=204.4

Q ss_pred             CCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEcc
Q 005038          293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS  372 (717)
Q Consensus       293 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  372 (717)
                      ....++.++..++ .+|..+.  +++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3466777777776 4555443  578888888888887777788888888888888888887777788888888888888


Q ss_pred             CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC-Cccccc
Q 005038          373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGE  451 (717)
Q Consensus       373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~  451 (717)
                      +|.+..                        ++...|..+++|++|++++|.+....+..|.++++|+.|++++ +.+...
T Consensus       132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            887763                        3334477889999999999999977777889999999999998 456655


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  531 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (717)
                      .+..+..+++|++|++++|.+++. |. +.                                                  
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~--------------------------------------------------  215 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-PN-LT--------------------------------------------------  215 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-CC-CT--------------------------------------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-cc-cc--------------------------------------------------
Confidence            566788999999999999988753 21 11                                                  


Q ss_pred             ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038          532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  611 (717)
Q Consensus       532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L  611 (717)
                         .+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..++.+..+++|
T Consensus       216 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          216 ---PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ---TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ---ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence               23479999999999998888899999999999999999998888889999999999999999997777788889999


Q ss_pred             CEEeccCCcCeecCC
Q 005038          612 EVFSVAYNNLSGEIP  626 (717)
Q Consensus       612 ~~L~l~~N~l~~~~p  626 (717)
                      +.|++++|++.+.+.
T Consensus       293 ~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          293 VELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEEECCSSCEECSTT
T ss_pred             CEEEccCCCcCCCCC
Confidence            999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=255.40  Aligned_cols=208  Identities=25%  Similarity=0.248  Sum_probs=141.5

Q ss_pred             CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038          242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  321 (717)
Q Consensus       242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  321 (717)
                      ++.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            344445666777776 6666542   467777777777776655567777777777777777776666667777777777


Q ss_pred             EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcc-cccCCCCCCCEEEccCCc-CcccCCCccccccccEEeccCccc
Q 005038          322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNML  399 (717)
Q Consensus       322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~  399 (717)
                      ++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            777777765444446677777777777777765433 356677777777777663 32                      


Q ss_pred             ccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC
Q 005038          400 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  477 (717)
Q Consensus       400 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  477 (717)
                        .++...|..+++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|+.|++++|.+++..+
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence              2223336677778888888888777777777788888888888888765554445567788888888887765443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.6e-28  Score=247.53  Aligned_cols=251  Identities=22%  Similarity=0.272  Sum_probs=196.8

Q ss_pred             CeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC--cccccCCCCCCCEEEcc
Q 005038          295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQLDSLQILDIS  372 (717)
Q Consensus       295 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~  372 (717)
                      +.++.+++.++ .+|..+.  +++++|++++|.+....+..|..+++|+.|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46677777666 3444332  5777777777777744444567777777777777776632  24455566777777777


Q ss_pred             CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccc
Q 005038          373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      +|.+.                        .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus        87 ~n~i~------------------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           87 FNGVI------------------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             SCSEE------------------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCccc------------------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence            77654                        22233 6778999999999999986654 5788899999999999999988


Q ss_pred             cchhccCCCCCCEEEccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI  530 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (717)
                      .+..+..+++|++|++++|.+.+ ..|..+..+                                               
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----------------------------------------------  174 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-----------------------------------------------  174 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-----------------------------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhC-----------------------------------------------
Confidence            88889999999999999999876 455555443                                               


Q ss_pred             eccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC-
Q 005038          531 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-  609 (717)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~-  609 (717)
                            ++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ 
T Consensus       175 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          175 ------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             ------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence                  3799999999999988888899999999999999999987777889999999999999999988888888884 


Q ss_pred             CCCEEeccCCcCeecCC
Q 005038          610 TLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       610 ~L~~L~l~~N~l~~~~p  626 (717)
                      +|++|++++|++++..+
T Consensus       249 ~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          249 SLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCCEEECTTCCEECSGG
T ss_pred             cCCEEEccCCCeecccC
Confidence            89999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=253.78  Aligned_cols=279  Identities=19%  Similarity=0.203  Sum_probs=221.2

Q ss_pred             CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038          267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  346 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  346 (717)
                      |+.....+.+++.++. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            5566678888888874 455443  5889999999988877666888899999999999988877777888889999999


Q ss_pred             ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCc-cccCCCCcCCEEeCCCC-cC
Q 005038          347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYN-RL  424 (717)
Q Consensus       347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~~  424 (717)
                      +++|.+++..+..+..+++|++|++++|++.+                        ++. ..|..+++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence            99998887666668888888888888887763                        222 34778899999999998 47


Q ss_pred             CcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhh
Q 005038          425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFS  504 (717)
Q Consensus       425 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (717)
                      .+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+....+..+.                       
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------  219 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----------------------  219 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence            766677899999999999999999988899999999999999999987532221111                       


Q ss_pred             cccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc---CCccCCeEeCCCcccCC----CC
Q 005038          505 IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTG----SI  577 (717)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~----~~  577 (717)
                                                    .+++|+.|++++|++++..+..+.   ..+.++.++++++.+++    .+
T Consensus       220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                          134799999999999876554433   35667788888777764    36


Q ss_pred             CcCCCCCCCCCEEECCCCcCCccCchh-hcCCCCCCEEeccCCcCeecCC
Q 005038          578 PSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       578 p~~~~~l~~L~~L~L~~N~i~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      |+.+..+++|++|++++|+++ .+|.. |..+++|++|++++|++.+.+|
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            677888999999999999998 45554 6889999999999999998876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=9.4e-28  Score=243.43  Aligned_cols=280  Identities=22%  Similarity=0.247  Sum_probs=226.4

Q ss_pred             CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCc--CCcccCCCCCCCEEEc
Q 005038          270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK--IPRWLGNLTRLQYIIM  347 (717)
Q Consensus       270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l  347 (717)
                      -+.++.+++.++. +|..+.  ++|++|++++|.+....+..|..+++|++|++++|.+...  .+..+..+++|+.|++
T Consensus         9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            3578888888874 444443  6899999999999966666789999999999999998743  2566778999999999


Q ss_pred             cCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc
Q 005038          348 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  427 (717)
Q Consensus       348 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  427 (717)
                      ++|.+.. ++..+..+++|++|++++|.+.+..+                       ...+..+++|++|++++|.+.+.
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence            9999984 66678899999999999998864321                       12377788999999999999888


Q ss_pred             cchhhhCCCCCcEEEcCCCcccc-ccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcc
Q 005038          428 IPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE  506 (717)
Q Consensus       428 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (717)
                      .+..+.++++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..++                      
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------  199 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----------------------  199 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC----------------------
Confidence            88889999999999999999986 5788899999999999999999887776665533                      


Q ss_pred             cccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC-
Q 005038          507 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-  585 (717)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-  585 (717)
                                                     +|+.|++++|++++..+..+..+++|++|++++|++++..|..+..++ 
T Consensus       200 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          200 -------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             -------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             -------------------------------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence                                           799999999999988777899999999999999999999999999985 


Q ss_pred             CCCEEECCCCcCCccCch--hhcCCCCCCEEeccCCcCeecCCCCC
Q 005038          586 HVESLDLSNNKLNGKIPH--QLVELKTLEVFSVAYNNLSGEIPEWK  629 (717)
Q Consensus       586 ~L~~L~L~~N~i~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~  629 (717)
                      +|++|++++|++++..+.  ...-+...+.+.+..+.+.+..|..+
T Consensus       249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          249 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             TCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             cCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence            999999999999865431  11223334444555666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=248.03  Aligned_cols=251  Identities=24%  Similarity=0.224  Sum_probs=199.0

Q ss_pred             CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038          269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  348 (717)
Q Consensus       269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  348 (717)
                      ....++.++..++. +|..+.  +++++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35677777777764 444443  678889999888888778888888889999999888887777888888889999999


Q ss_pred             CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCcc
Q 005038          349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGS  427 (717)
Q Consensus       349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~  427 (717)
                      +|.+++..+..|..+++|++|++++|++..                        ++...|..+++|++|++++| .+...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCcccc
Confidence            888887777778888888888888887752                        23334777888889998884 45544


Q ss_pred             cchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccc
Q 005038          428 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG  507 (717)
Q Consensus       428 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (717)
                      .+..|.++++|++|++++|++++. + .+..+++|+.|++++|.+++..|..|..+.                       
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  242 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----------------------  242 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence            455688888899999998888854 3 477888889999999888877776665543                       


Q ss_pred             ccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCC
Q 005038          508 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV  587 (717)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  587 (717)
                                                    +|+.|++++|++.+..+..|.++++|++|+|++|++++..+..|..+++|
T Consensus       243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                                          78888999988888888888888889999999998887777788888889


Q ss_pred             CEEECCCCcCCccC
Q 005038          588 ESLDLSNNKLNGKI  601 (717)
Q Consensus       588 ~~L~L~~N~i~~~~  601 (717)
                      ++|+|++|++.+..
T Consensus       293 ~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          293 VELHLHHNPWNCDC  306 (452)
T ss_dssp             CEEECCSSCEECST
T ss_pred             CEEEccCCCcCCCC
Confidence            99999998887543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=246.44  Aligned_cols=248  Identities=27%  Similarity=0.246  Sum_probs=166.3

Q ss_pred             CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccC
Q 005038          270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN  349 (717)
Q Consensus       270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  349 (717)
                      .+.++.++..++. +|..+.  ++++.|+|++|++....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4566666666653 444433  5677777777777766666777777777777777777666666677777777777777


Q ss_pred             CcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCccc
Q 005038          350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGSI  428 (717)
Q Consensus       350 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~  428 (717)
                      |.+++..+..|..+++|++|++++|.+..                        ++...|..+++|++|++++| .+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            77776666667777777777777776652                        22233666677777777764 344334


Q ss_pred             chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccc
Q 005038          429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  508 (717)
Q Consensus       429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (717)
                      +..|.++++|++|++++|+++.. | .+..+++|+.|++++|++++..|..|..+.                        
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------  231 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM------------------------  231 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCT------------------------
T ss_pred             cchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCc------------------------
Confidence            44667777777777777777633 2 366677777777777777766665554433                        


Q ss_pred             cccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC
Q 005038          509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE  588 (717)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  588 (717)
                                                   +|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus       232 -----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          232 -----------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             -----------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             -----------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence                                         677777777777766666777777777777777777766666677777777


Q ss_pred             EEECCCCcCCc
Q 005038          589 SLDLSNNKLNG  599 (717)
Q Consensus       589 ~L~L~~N~i~~  599 (717)
                      .|+|++|++.+
T Consensus       283 ~L~L~~Np~~C  293 (440)
T 3zyj_A          283 RIHLHHNPWNC  293 (440)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEcCCCCccC
Confidence            77777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.5e-27  Score=234.52  Aligned_cols=89  Identities=21%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      +|+.|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..++.+..+++|+.|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            45556666666554445557777778888888888877777777788888888888888876666677778888888888


Q ss_pred             CCcCeecCC
Q 005038          618 YNNLSGEIP  626 (717)
Q Consensus       618 ~N~l~~~~p  626 (717)
                      +|++.+..+
T Consensus       234 ~N~~~c~~~  242 (285)
T 1ozn_A          234 DNPWVCDCR  242 (285)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCCCC
Confidence            888876554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.6e-29  Score=281.94  Aligned_cols=332  Identities=11%  Similarity=0.046  Sum_probs=176.6

Q ss_pred             CCCCCCEEEccCCccccccc---hhhhhCCCCCCEEEccCcccCc----cCcccccCCCCCCeEECcCCcCcccCccccc
Q 005038          241 NMKFLQILDLSNNHLTGEIP---EHLAVGCVNLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS  313 (717)
Q Consensus       241 ~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  313 (717)
                      .+++|++|++++|.+++...   ..+...+++|++|++++|.+++    ..+..+..+++|++|++++|.+.+ .+..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            44555555555554442211   1122234555555555555441    112222344555555555555443 334455


Q ss_pred             CCCCCCEEEccCCcCc---CcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCC--cccccc
Q 005038          314 KCSSLEGLYLNNNSLL---GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLS  388 (717)
Q Consensus       314 ~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~  388 (717)
                      .+++|++|+++.....   ...+..+..+++|+.++++++... .++..+..+++|++|++++|.+.+....  ...+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            5555555555432211   122233444555555555543222 3444444555555555555554322111  112445


Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCC-----------CcCCcc-cchhhhCCCCCcEEEcCCCccccccchhc
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY-----------NRLNGS-IPDWVDGLSQLSHLILGHNNLEGEVSVQL  456 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  456 (717)
                      |+.|+++ +.+........+..+++|++|++++           +.+++. .+.....+++|++|+++.|++++..+..+
T Consensus       320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            5555555 2222222222245567788888883           445432 22224457888888887788876666666


Q ss_pred             cC-CCCCCEEEcc----CCcCccCCCc-ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038          457 CE-LNQLQLLDLS----NNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI  530 (717)
Q Consensus       457 ~~-l~~L~~L~L~----~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (717)
                      .. +++|+.|+++    .|.+++...+ .+..                                                
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------------------------------------------  430 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------------------------------------------  430 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------------------------------------------
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHH------------------------------------------------
Confidence            54 7788888886    4444422110 0000                                                


Q ss_pred             eccccccccceeeCCCCc--cCCCCccccc-CCccCCeEeCCCcccCC-CCCcCCCCCCCCCEEECCCCcCCcc-Cchhh
Q 005038          531 YQGKVLSLLSGLDLSCNK--LIGHIPPQIG-NLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNGK-IPHQL  605 (717)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~i~~~-~p~~~  605 (717)
                       ....+++|+.|++++|.  +++..+..+. .+++|++|+|++|++++ .++..+.++++|++|++++|++++. ++...
T Consensus       431 -~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          431 -LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             -HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             -HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence             00124468888886543  4444333433 37788888888888875 2344456788888888888887643 34445


Q ss_pred             cCCCCCCEEeccCCcCeec
Q 005038          606 VELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       606 ~~l~~L~~L~l~~N~l~~~  624 (717)
                      ..+++|++|++++|+++..
T Consensus       510 ~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTT
T ss_pred             HhcCccCeeECcCCcCCHH
Confidence            6788888888888887743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.2e-29  Score=282.98  Aligned_cols=407  Identities=13%  Similarity=0.054  Sum_probs=221.5

Q ss_pred             CCCCCCEEEccCCCCcccCChhhhhCCCC-CCEEEccCCcC-cc-cCccCcCCCCCcCEEEccCCcCCccCCcc---ccc
Q 005038          143 HQHDLEYVDLSHIKMNGEFPNWLLENNTK-LETLFLVNDSL-AG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVK---IGD  216 (717)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~-~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~---~~~  216 (717)
                      .+++|++|+++++.+++..+.++...++. |++|++++|.. .. ..+.....+++|++|++++|.+++....+   +..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56666777776666655444444222333 66666666641 11 01111234566666666666654332211   223


Q ss_pred             cCCCCcEEECCCCCCC----ccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC---ccCccccc
Q 005038          217 VLPSLYVFNNSMNALD----GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNF  289 (717)
Q Consensus       217 ~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~  289 (717)
                      .+++|++|++++|.+.    +.++..+..+++|++|++++|.+. .++..+ ..+++|++|+++.....   ......+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHH-hhhhHHHhhcccccccccchHHHHHHhh
Confidence            3556666666666554    223333445566666666666555 344333 23566666666542211   12223344


Q ss_pred             CCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCC-cccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038          290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  368 (717)
Q Consensus       290 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  368 (717)
                      .+++|+.|+++++... ..|..+..+++|++|++++|.+.+... ..+..+++|+.|+++++...+..+.....+++|++
T Consensus       268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            4555555555553222 334444555555555555555432222 22344555555555522211112222234455555


Q ss_pred             EEccC---CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC-CCCCcEEEcC
Q 005038          369 LDISD---NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG-LSQLSHLILG  444 (717)
Q Consensus       369 L~l~~---n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~  444 (717)
                      |++++   +......               .+.+.+......+..+++|++|+++.+.+++..+..+.. +++|+.|+++
T Consensus       347 L~L~~g~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          347 LRIERGADEQGMEDE---------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             EEEECCCCSSTTSST---------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             EEeecCccccccccc---------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            55552   0000000               122221111122345788999999888888766666655 8899999996


Q ss_pred             ----CCccccc-----cchhccCCCCCCEEEccCCc--CccCCCcccccccccccccCCCCCCcchhhhhhccccccccc
Q 005038          445 ----HNNLEGE-----VSVQLCELNQLQLLDLSNNN--LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE  513 (717)
Q Consensus       445 ----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (717)
                          .|.+++.     .+..+..+++|+.|++++|.  +++..+..+                                 
T Consensus       412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~---------------------------------  458 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI---------------------------------  458 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH---------------------------------
T ss_pred             ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH---------------------------------
Confidence                5677753     33346678999999997654  332111111                                 


Q ss_pred             ccccceEEEeeccceeeeccccccccceeeCCCCccCCC-CcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEE
Q 005038          514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLD  591 (717)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  591 (717)
                                         ...+++|+.|++++|++++. .+..+.++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus       459 -------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          459 -------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             -------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred             -------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence                               01245799999999988753 344567889999999999998744 333445689999999


Q ss_pred             CCCCcCCccCchhh-cCCCCCCEEeccCC
Q 005038          592 LSNNKLNGKIPHQL-VELKTLEVFSVAYN  619 (717)
Q Consensus       592 L~~N~i~~~~p~~~-~~l~~L~~L~l~~N  619 (717)
                      +++|+++......+ ..++.+....+..+
T Consensus       520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          520 VQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            99999886543333 35677766666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.5e-26  Score=229.13  Aligned_cols=225  Identities=26%  Similarity=0.268  Sum_probs=153.6

Q ss_pred             cEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038          222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG  301 (717)
Q Consensus       222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  301 (717)
                      ++++.+++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45566666555 334322  356666777666666 44444444566666666666666665566666666666666666


Q ss_pred             Cc-CcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038          302 NR-FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL  380 (717)
Q Consensus       302 n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  380 (717)
                      |. +....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++.   
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence            65 55444556666666666666666666555556666666666666666666555555666666666666666554   


Q ss_pred             CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC
Q 005038          381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN  460 (717)
Q Consensus       381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  460 (717)
                                           .++...|..+++|++|++++|.+.+..|.++..+++|+.|++++|++++..+..+..++
T Consensus       167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence                                 23333477788899999999999888788888899999999999999887777788899


Q ss_pred             CCCEEEccCCcCcc
Q 005038          461 QLQLLDLSNNNLHG  474 (717)
Q Consensus       461 ~L~~L~L~~n~l~~  474 (717)
                      +|+.|++++|++..
T Consensus       226 ~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          226 ALQYLRLNDNPWVC  239 (285)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             ccCEEeccCCCccC
Confidence            99999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.2e-26  Score=232.58  Aligned_cols=234  Identities=20%  Similarity=0.315  Sum_probs=127.3

Q ss_pred             CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      +++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444555554444 33444444555555555555554 44545555555555555555555 34555555555666666


Q ss_pred             cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038          372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      ++|.+.+.+|..+..     .         .. .+.|..+++|++|++++|.++ .+|..+..+++|++|++++|++++ 
T Consensus       158 ~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            555544443332110     0         00 011445566666666666666 455556666666666666666663 


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  531 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (717)
                      .+..+..+++|++|++++|.+                                                           
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~-----------------------------------------------------------  241 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTA-----------------------------------------------------------  241 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTT-----------------------------------------------------------
T ss_pred             CchhhccCCCCCEEECcCCcc-----------------------------------------------------------
Confidence            333455555555555555544                                                           


Q ss_pred             ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038          532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  611 (717)
Q Consensus       532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L  611 (717)
                                        .+.+|..++.+++|++|+|++|++.+.+|..+.++++|++|+|++|++.+.+|+.+..+++|
T Consensus       242 ------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          242 ------------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             ------------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             ------------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence                              44455555566666666666666666666666666666666666666666666666666666


Q ss_pred             CEEeccCCcCe
Q 005038          612 EVFSVAYNNLS  622 (717)
Q Consensus       612 ~~L~l~~N~l~  622 (717)
                      +.+++..+.+.
T Consensus       304 ~~l~l~~~~~~  314 (328)
T 4fcg_A          304 CIILVPPHLQA  314 (328)
T ss_dssp             CEEECCGGGSC
T ss_pred             eEEeCCHHHHH
Confidence            66666655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.6e-28  Score=247.22  Aligned_cols=264  Identities=22%  Similarity=0.228  Sum_probs=178.9

Q ss_pred             EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCc
Q 005038          272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH  351 (717)
Q Consensus       272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  351 (717)
                      ..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            34445555543333444455566666666666666555666666666666666666654332  5566666666666666


Q ss_pred             ccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchh
Q 005038          352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW  431 (717)
Q Consensus       352 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  431 (717)
                      +++..     ..++|++|++++|.+.+                       . +   ...+++|++|++++|++++..+..
T Consensus        92 l~~l~-----~~~~L~~L~l~~n~l~~-----------------------~-~---~~~~~~L~~L~l~~N~l~~~~~~~  139 (317)
T 3o53_A           92 VQELL-----VGPSIETLHAANNNISR-----------------------V-S---CSRGQGKKNIYLANNKITMLRDLD  139 (317)
T ss_dssp             EEEEE-----ECTTCCEEECCSSCCSE-----------------------E-E---ECCCSSCEEEECCSSCCCSGGGBC
T ss_pred             ccccc-----CCCCcCEEECCCCccCC-----------------------c-C---ccccCCCCEEECCCCCCCCccchh
Confidence            65322     12555666665555542                       1 1   123567899999999998777778


Q ss_pred             hhCCCCCcEEEcCCCccccccchhc-cCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccc
Q 005038          432 VDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQG  510 (717)
Q Consensus       432 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (717)
                      +..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+.                                
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------  187 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--------------------------------  187 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--------------------------------
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--------------------------------
Confidence            8888999999999999987777666 3688899999999888643211                                


Q ss_pred             cccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEE
Q 005038          511 FLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL  590 (717)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  590 (717)
                                             ..+++|+.|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus       188 -----------------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          188 -----------------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             -----------------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             -----------------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence                                   1134688888888888854 445788888888888888888 466778888888888


Q ss_pred             ECCCCcCC-ccCchhhcCCCCCCEEeccCC-cCeecCC
Q 005038          591 DLSNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGEIP  626 (717)
Q Consensus       591 ~L~~N~i~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p  626 (717)
                      ++++|++. +.+|..+..+++|+.+++++| .+.+..|
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            88888887 566777778888888888744 3444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.8e-27  Score=242.06  Aligned_cols=274  Identities=19%  Similarity=0.202  Sum_probs=217.7

Q ss_pred             CCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038          294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  373 (717)
Q Consensus       294 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  373 (717)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4556677777765555666777899999999999998777889999999999999999986554  88899999999999


Q ss_pred             CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038          374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  453 (717)
Q Consensus       374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  453 (717)
                      |.+.+                             +...++|++|++++|.+++..+.   .+++|++|++++|++++..+
T Consensus        90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            98763                             11237899999999999876544   36889999999999998888


Q ss_pred             hhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecc
Q 005038          454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  533 (717)
Q Consensus       454 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (717)
                      ..+..+++|++|++++|.+++..+..+..                                                   
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------------  166 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------------------------------------------  166 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence            88889999999999999998665544321                                                   


Q ss_pred             ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038          534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  613 (717)
Q Consensus       534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~  613 (717)
                       .++.|++|++++|++++. + ....+++|++|+|++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.
T Consensus       167 -~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~  241 (317)
T 3o53_A          167 -SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (317)
T ss_dssp             -GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             -ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence             134799999999999855 3 334589999999999999954 445889999999999999998 56888899999999


Q ss_pred             EeccCCcCe-ecCCCCCcccCCCCcccccCCcCCCCCCCCCCCCC
Q 005038          614 FSVAYNNLS-GEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP  657 (717)
Q Consensus       614 L~l~~N~l~-~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~  657 (717)
                      |++++|++. +.+|.++..+..++.+.+.+++.+.+.+...|..+
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~  286 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence            999999999 67778777777777777775544444333334433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-24  Score=238.36  Aligned_cols=86  Identities=27%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      +|+.|++++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|++|+|++|+++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            46667777776664 33   34466777777777777 3443   4567777777777776 556667777777777777


Q ss_pred             CCcCeecCCCCCccc
Q 005038          618 YNNLSGEIPEWKAQF  632 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~  632 (717)
                      +|++++..|..+..+
T Consensus       293 ~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          293 GNPLSERTLQALREI  307 (622)
T ss_dssp             SCCCCHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhc
Confidence            777776666544433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.7e-25  Score=226.55  Aligned_cols=226  Identities=19%  Similarity=0.207  Sum_probs=160.3

Q ss_pred             CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038          218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  297 (717)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  297 (717)
                      .+.++.|++++|.+. .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            356777777777776 56666777777777777777777 6666554 4777777777777776 456667777777777


Q ss_pred             ECcCCcCcccCcccccC---------CCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038          298 QLEGNRFVGEIPQSLSK---------CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  368 (717)
Q Consensus       298 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  368 (717)
                      ++++|.+.+.+|..+..         +++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            77776666666655443         566666666666655 455555566666666666666653 3334555566666


Q ss_pred             EEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcc
Q 005038          369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL  448 (717)
Q Consensus       369 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  448 (717)
                      |++++|.+.                       +.++.. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++
T Consensus       234 L~Ls~n~~~-----------------------~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          234 LDLRGCTAL-----------------------RNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             EECTTCTTC-----------------------CBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             EECcCCcch-----------------------hhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            666655554                       444443 77788999999999888888888888999999999999998


Q ss_pred             ccccchhccCCCCCCEEEccCCcCc
Q 005038          449 EGEVSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       449 ~~~~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                      .+.+|..+..+++|+.+++..+.+.
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhccHHHhhccCceEEeCCHHHHH
Confidence            8889999999999999998877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=249.48  Aligned_cols=235  Identities=23%  Similarity=0.226  Sum_probs=140.2

Q ss_pred             CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      ++|++|+|++|.+.+..|..|..+++|++|++++|.+.+..|  +..+++|+.|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            356666666666665555566666666666666666654333  5555666666666665553221     145555555


Q ss_pred             cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038          372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      ++|.+.+                       ..    ...+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       107 ~~N~l~~-----------------------~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A          107 ANNNISR-----------------------VS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             CSSCCCC-----------------------EE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcCCC-----------------------CC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            5555442                       11    12246777888888887777677777777888888888887776


Q ss_pred             cchhcc-CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038          452 VSVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI  530 (717)
Q Consensus       452 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (717)
                      .|..+. .+++|+.|++++|.+++..+..                                                   
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------------------------------  188 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQV---------------------------------------------------  188 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECCC---------------------------------------------------
T ss_pred             ChHHHhhhCCcccEEecCCCccccccccc---------------------------------------------------
Confidence            666665 5777777777777765432111                                                   


Q ss_pred             eccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC-ccCchhhcCCC
Q 005038          531 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVELK  609 (717)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~-~~~p~~~~~l~  609 (717)
                          .++.|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus       189 ----~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          189 ----VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             ----CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             ----cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence                12356666666666664333 36666666666666666663 4555666666666666666665 34444555555


Q ss_pred             CCCEEecc
Q 005038          610 TLEVFSVA  617 (717)
Q Consensus       610 ~L~~L~l~  617 (717)
                      .|+.++++
T Consensus       263 ~L~~l~~~  270 (487)
T 3oja_A          263 RVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCcEEecc
Confidence            55544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.9e-24  Score=232.39  Aligned_cols=129  Identities=28%  Similarity=0.319  Sum_probs=90.8

Q ss_pred             CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038          411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  490 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  490 (717)
                      +++|+.|++++|.+++ +|.   .+++|+.|++++|.++... .   .+++|+.|++++|++++. |.            
T Consensus       180 ~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~l-p~------------  238 (622)
T 3g06_A          180 PSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV------------  238 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCC-CC------------
T ss_pred             CCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcC-CC------------
Confidence            3566666666666663 232   2356777777777776332 2   246777788887777642 21            


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038          491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  570 (717)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  570 (717)
                                                                  .+++|+.|++++|+++. +|.   .+++|+.|+|++
T Consensus       239 --------------------------------------------~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          239 --------------------------------------------LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             --------------------------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             --------------------------------------------CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCC
Confidence                                                        12368888888888874 444   568899999999


Q ss_pred             cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038          571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  609 (717)
Q Consensus       571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~  609 (717)
                      |+++ .+|..|.++++|+.|+|++|++++..|..+..++
T Consensus       271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999 6788899999999999999999988887776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.7e-26  Score=232.76  Aligned_cols=209  Identities=23%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             ccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCc-cCccccc-------CCCCCCeEECcCCcCcccCcc
Q 005038          239 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ  310 (717)
Q Consensus       239 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~  310 (717)
                      +...++|+.|++++|.+  .+|..+...   |++|++++|.+.. ..+..+.       ++++|++|++++|++.+..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34445666777777776  566655532   6666676666632 2333332       466777777777777666665


Q ss_pred             cc--cCCCCCCEEEccCCcCcCcCCcccCCC-----CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCc
Q 005038          311 SL--SKCSSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC  383 (717)
Q Consensus       311 ~~--~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  383 (717)
                      .+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            54  6667777777777776654 5555444     666666666666665555666666666666666665442100  


Q ss_pred             cccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc---ccchhhhCCCCCcEEEcCCCccccccc-hhccCC
Q 005038          384 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG---SIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCEL  459 (717)
Q Consensus       384 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l  459 (717)
                                        ......+..+++|++|++++|++++   .....+..+++|++|++++|++++..+ ..+..+
T Consensus       191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence                              0001112455566666666666552   111223445555555555555554432 223334


Q ss_pred             CCCCEEEccCCcCc
Q 005038          460 NQLQLLDLSNNNLH  473 (717)
Q Consensus       460 ~~L~~L~L~~n~l~  473 (717)
                      ++|++|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            44444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.3e-26  Score=233.38  Aligned_cols=81  Identities=32%  Similarity=0.433  Sum_probs=45.4

Q ss_pred             ccceeeCCCCccCCCCc-ccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          538 LLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      .|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            45555555555554432 23444556666666666666 4454444  5666666666666543 44 556666666666


Q ss_pred             cCCcCee
Q 005038          617 AYNNLSG  623 (717)
Q Consensus       617 ~~N~l~~  623 (717)
                      ++|++++
T Consensus       304 ~~N~l~~  310 (312)
T 1wwl_A          304 KGNPFLD  310 (312)
T ss_dssp             TTCTTTC
T ss_pred             cCCCCCC
Confidence            6666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.5e-26  Score=242.64  Aligned_cols=247  Identities=21%  Similarity=0.225  Sum_probs=206.4

Q ss_pred             CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEe
Q 005038          314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH  393 (717)
Q Consensus       314 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  393 (717)
                      .+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+.              
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--------------   95 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL--------------   95 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE--------------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC--------------
Confidence            44589999999999998888899999999999999999987655  88999999999999987631              


Q ss_pred             ccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc
Q 005038          394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                                     ...++|++|++++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        96 ---------------~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A           96 ---------------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             ---------------EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             ---------------CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence                           1227899999999999976554   4689999999999999988888999999999999999998


Q ss_pred             cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCC
Q 005038          474 GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI  553 (717)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  553 (717)
                      +..|..+..                                                    .++.|+.|+|++|.+++. 
T Consensus       158 ~~~~~~l~~----------------------------------------------------~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          158 TVNFAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             EEEGGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-
T ss_pred             CcChHHHhh----------------------------------------------------hCCcccEEecCCCccccc-
Confidence            876655431                                                    134799999999999865 


Q ss_pred             cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe-ecCCCCCccc
Q 005038          554 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWKAQF  632 (717)
Q Consensus       554 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~~  632 (717)
                      | .+..+++|++|+|++|.+++..| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|.++..+
T Consensus       185 ~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          185 K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            3 34468999999999999996555 58999999999999999994 7778899999999999999998 5667766666


Q ss_pred             CCCCccccc-------CCcCCCCCC
Q 005038          633 ATFNESSYE-------GNTFLCGLP  650 (717)
Q Consensus       633 ~~l~~~~~~-------~n~~~c~~~  650 (717)
                      ..+..+...       ++++.|.++
T Consensus       262 ~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          262 QRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCcEEeccccccccCCCcccccCC
Confidence            666555554       788888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=3.8e-28  Score=270.94  Aligned_cols=82  Identities=12%  Similarity=0.045  Sum_probs=42.1

Q ss_pred             ccceeeCCCCccCCCCcccc-cCCccCCeEeCCCcccCCCCCc-CCCCCCCCCEEECCCCcCCccCchhh-cCCCCCCEE
Q 005038          538 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVF  614 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~i~~~~p~~~-~~l~~L~~L  614 (717)
                      +|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++......+ ..++.|+..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence            56666666666554333333 4456666666666666432222 23345666666666666643222233 345555554


Q ss_pred             eccCC
Q 005038          615 SVAYN  619 (717)
Q Consensus       615 ~l~~N  619 (717)
                      .+..+
T Consensus       537 ~~~~~  541 (594)
T 2p1m_B          537 VIDER  541 (594)
T ss_dssp             EECSS
T ss_pred             EecCC
Confidence            44444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=4.3e-28  Score=270.48  Aligned_cols=431  Identities=13%  Similarity=0.079  Sum_probs=249.4

Q ss_pred             CcccccCCCCCCeeeCCCCCCCC---Cc------------chhccCCCCCCEEeCCCCCCcccCCccccC-CCCCCCEEE
Q 005038           11 RSQGLCSLVHLQELYIASNDLRG---SL------------PWCMANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELM   74 (717)
Q Consensus        11 ~~~~~~~l~~L~~L~Ls~n~i~~---~~------------~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~-~l~~L~~L~   74 (717)
                      |...+.++++|++|+++++....   ..            +.....+++|++|+|++|.+++..+. .+. .+++|++|+
T Consensus        58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~  136 (594)
T 2p1m_B           58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLV  136 (594)
T ss_dssp             HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEE
T ss_pred             HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEe
Confidence            33456788999999999875211   11            12234688999999999988754444 343 688999999


Q ss_pred             CCCC-cccCcCCcccccCCCCCCEEEccCCccccccccccccc-CCCccccEEEccCCC-CCC-CCCchhhcCCCCCCEE
Q 005038           75 LSNN-YFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI-APKFQLNTLSLSSNY-GDG-FIFPKFLYHQHDLEYV  150 (717)
Q Consensus        75 L~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~-~~~~~~l~~~~~L~~L  150 (717)
                      +++| .++.......+.++++|++|++++|.+++........+ ..+++|++|+++.+. ... ..+......+++|++|
T Consensus       137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence            9988 44321121233478999999999998776554433322 356689999995443 111 1122334567889999


Q ss_pred             EccCCCCcccCChhhhhCCCCCCEEEccCCcC-------cccCccCcCCCCCcCEE-EccCCcCCccCCccccccCCCCc
Q 005038          151 DLSHIKMNGEFPNWLLENNTKLETLFLVNDSL-------AGPFRLPIHSHKRLRQL-DVSNNNIRGHIPVKIGDVLPSLY  222 (717)
Q Consensus       151 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~~~~~~~L~~L-~ls~n~i~~~~~~~~~~~l~~L~  222 (717)
                      ++++|...+.++.. +..+++|+.|.+..+..       .+ .+..+.++++|+.| .+.+... +.++. +...+++|+
T Consensus       217 ~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~  292 (594)
T 2p1m_B          217 KLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLT  292 (594)
T ss_dssp             ECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCC
T ss_pred             ecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCC
Confidence            99888333334444 46788888888765532       22 22356677888887 3433221 12222 222357788


Q ss_pred             EEECCCCCCCccC-CccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccC---------cccCccCccccc-CC
Q 005038          223 VFNNSMNALDGSI-PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN---------NNLQGHLFSRNF-NL  291 (717)
Q Consensus       223 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~---------n~i~~~~~~~~~-~l  291 (717)
                      +|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|+++.         +.+++.....+. .+
T Consensus       293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~  371 (594)
T 2p1m_B          293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC  371 (594)
T ss_dssp             EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred             EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence            8888877765322 222456777888888777 44333334444577788887733         333322222222 36


Q ss_pred             CCCCeEECcCCcCcccCccccc-CCCCCCEEEcc--C----CcCcCc-----CCcccCCCCCCCEEEccCCcccCCcccc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLS-KCSSLEGLYLN--N----NSLLGK-----IPRWLGNLTRLQYIIMPNNHLEGPIPVE  359 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~  359 (717)
                      ++|++|.+..+.+++.....+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++.....
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            6777776666666554433333 46677777776  2    233311     111134455666666654 333322223


Q ss_pred             cCC-CCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccch-hhhCCCC
Q 005038          360 FCQ-LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQ  437 (717)
Q Consensus       360 ~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~  437 (717)
                      +.. +++|+.|++++|.++                       +.........+++|++|++++|.+++.... ....+++
T Consensus       451 l~~~~~~L~~L~L~~~~i~-----------------------~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDS-----------------------DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSS-----------------------HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             HHHhchhccEeeccCCCCc-----------------------HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            322 455666666555543                       222222124567788888888877543332 3345778


Q ss_pred             CcEEEcCCCccccccchhc-cCCCCCCEEEccCCc
Q 005038          438 LSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNN  471 (717)
Q Consensus       438 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~  471 (717)
                      |+.|++++|+++......+ ..+|.|+...+..+.
T Consensus       508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            8888888887754434334 456777666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.4e-24  Score=211.61  Aligned_cols=209  Identities=25%  Similarity=0.304  Sum_probs=131.7

Q ss_pred             CCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCC
Q 005038          341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS  420 (717)
Q Consensus       341 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  420 (717)
                      +++.|++++|.+++..+..|..+++|++|++++|.+.+.                        +...|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence            455555555555544444555555555555555554421                        22224555566666666


Q ss_pred             CCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccC-CCcccccccccccccCCCCCCcch
Q 005038          421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQF  499 (717)
Q Consensus       421 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  499 (717)
                      +|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+..+                
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----------------  148 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----------------  148 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------
Confidence            6666655555566666666666666666655555566666666666666666543 24444332                


Q ss_pred             hhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCC----eEeCCCcccCC
Q 005038          500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLTG  575 (717)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~  575 (717)
                                                           ++|+.|++++|++++..+..+..+++|+    +|++++|.+++
T Consensus       149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                 2566677777776666566666666666    78888888886


Q ss_pred             CCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          576 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       576 ~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      ..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            55555543 4788888888888866666678888888888888888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.5e-23  Score=207.98  Aligned_cols=206  Identities=25%  Similarity=0.308  Sum_probs=148.4

Q ss_pred             CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcC
Q 005038          365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG  444 (717)
Q Consensus       365 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  444 (717)
                      ..+.++++++.++. +|..+ +.+++.|++++|.+.+ ++...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            56788888888874 33322 3567788888887743 444457777888888888887776666666777788888888


Q ss_pred             CCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEee
Q 005038          445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT  524 (717)
Q Consensus       445 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (717)
                      +|++++..+..+..+++|++|++++|.+++..+..|..+                                         
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------  132 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-----------------------------------------  132 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-----------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-----------------------------------------
Confidence            888777666677777788888888877776665554443                                         


Q ss_pred             ccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchh
Q 005038          525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ  604 (717)
Q Consensus       525 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~  604 (717)
                                  ++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..
T Consensus       133 ------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          133 ------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             ------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                        26777788877777666666777777888888877777666666777777888888887777655566


Q ss_pred             hcCCCCCCEEeccCCcCeecCC
Q 005038          605 LVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       605 ~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      +..+++|+.|++++|++.+..+
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccccCCCEEEecCCCeeCCCc
Confidence            7777777777777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=6.3e-24  Score=211.65  Aligned_cols=207  Identities=26%  Similarity=0.283  Sum_probs=173.9

Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      ++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            333333333332 2333348889999999999999998878889999999999999999998888899999999999999


Q ss_pred             CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038          469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  548 (717)
Q Consensus       469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  548 (717)
                      +|.+.+..+..+..+                                                     ++|++|++++|+
T Consensus       109 ~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~  135 (276)
T 2z62_A          109 ETNLASLENFPIGHL-----------------------------------------------------KTLKELNVAHNL  135 (276)
T ss_dssp             TSCCCCSTTCCCTTC-----------------------------------------------------TTCCEEECCSSC
T ss_pred             CCCccccCchhcccC-----------------------------------------------------CCCCEEECcCCc
Confidence            999987666554443                                                     379999999999


Q ss_pred             cCCC-CcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC----EEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038          549 LIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  623 (717)
Q Consensus       549 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~  623 (717)
                      +.+. +|..+..+++|++|++++|++++..+..+..+++|+    +|++++|++++..+..+ ...+|+.|++++|.+++
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKS  214 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSC
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceee
Confidence            9874 588999999999999999999988888888777777    99999999996665555 44589999999999997


Q ss_pred             cCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          624 EIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       624 ~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      ..+..+..+.+++.+.+.+||+.|+|+
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            777777889999999999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.8e-23  Score=207.56  Aligned_cols=205  Identities=24%  Similarity=0.270  Sum_probs=130.8

Q ss_pred             cCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCc
Q 005038          360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS  439 (717)
Q Consensus       360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  439 (717)
                      +..++++++++++++.++...+..  +..++.|++++|.+.+. ....|..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            556778888888888887443322  24666777777766433 233366667777777777766643332  5566777


Q ss_pred             EEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccce
Q 005038          440 HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI  519 (717)
Q Consensus       440 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (717)
                      +|++++|+++ ..|..+..+++|++|++++|++++..+..|..+.                                   
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----------------------------------  124 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------------------------------  124 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence            7777777766 3445566666777777777766655555444432                                   


Q ss_pred             EEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc
Q 005038          520 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG  599 (717)
Q Consensus       520 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~  599 (717)
                                        +|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ 
T Consensus       125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                              5666777777766655555666667777777777776555555666667777777777766 


Q ss_pred             cCchhhcCCCCCCEEeccCCcCeec
Q 005038          600 KIPHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       600 ~~p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      .+|..+....+|+.+++++|++.+.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccChhhcccccCCeEEeCCCCccCc
Confidence            5566666666677777777766654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.9e-23  Score=203.11  Aligned_cols=206  Identities=23%  Similarity=0.250  Sum_probs=154.2

Q ss_pred             cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038          388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  467 (717)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  467 (717)
                      ..+.++++++.+. .++.. +  .+++++|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4667778777775 34443 2  256788888888887666667778888888888888887666666777888888888


Q ss_pred             cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      ++|.+.+..+..|..+                                                     ++|++|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n  119 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQL-----------------------------------------------------VNLAELRLDRN  119 (270)
T ss_dssp             CSSCCCCCCTTTTTTC-----------------------------------------------------SSCCEEECCSS
T ss_pred             CCCcCCcCCHhHcccc-----------------------------------------------------cCCCEEECCCC
Confidence            8888776555544443                                                     36888888888


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      ++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            88877777778888888888888888866666677888888888888888766666777788888888888888766666


Q ss_pred             CCcccCCCCcccccCCcCCCCCC
Q 005038          628 WKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       628 ~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      .+..+..++.+.+.+||+.|+|+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            66677777888888888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.8e-22  Score=201.65  Aligned_cols=206  Identities=25%  Similarity=0.202  Sum_probs=172.8

Q ss_pred             cccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcccccccc
Q 005038          311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIK  390 (717)
Q Consensus       311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~  390 (717)
                      .+.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..          
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------   71 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----------   71 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE----------
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc----------
Confidence            3667888999999999887 4565553  68899999999998888888889999999999988876321          


Q ss_pred             EEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                                    .  ...+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        72 --------------~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           72 --------------V--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             --------------C--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             --------------C--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence                          1  246788999999999998 56777888999999999999999888888999999999999999


Q ss_pred             cCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC
Q 005038          471 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  550 (717)
Q Consensus       471 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  550 (717)
                      ++++..+..|..+                                                     ++|+.|+|++|+++
T Consensus       135 ~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~L~~N~l~  161 (290)
T 1p9a_G          135 ELKTLPPGLLTPT-----------------------------------------------------PKLEKLSLANNNLT  161 (290)
T ss_dssp             CCCCCCTTTTTTC-----------------------------------------------------TTCCEEECTTSCCS
T ss_pred             CCCccChhhcccc-----------------------------------------------------cCCCEEECCCCcCC
Confidence            9987776665543                                                     37999999999999


Q ss_pred             CCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038          551 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK  600 (717)
Q Consensus       551 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~  600 (717)
                      +..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            777777889999999999999999 6777888888999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=7.2e-23  Score=203.13  Aligned_cols=224  Identities=23%  Similarity=0.268  Sum_probs=178.4

Q ss_pred             EEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccc
Q 005038          320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML  399 (717)
Q Consensus       320 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~  399 (717)
                      .+++.++.+.+.  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+                     
T Consensus        23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~---------------------   77 (272)
T 3rfs_A           23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD---------------------   77 (272)
T ss_dssp             HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC---------------------
T ss_pred             HHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC---------------------
Confidence            344444444322  2234567777778777777632  346667777777777776652                     


Q ss_pred             ccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcc
Q 005038          400 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC  479 (717)
Q Consensus       400 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  479 (717)
                         ++  .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..
T Consensus        78 ---~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  152 (272)
T 3rfs_A           78 ---IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV  152 (272)
T ss_dssp             ---CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH
Confidence               11  3778889999999999999887778889999999999999999888888899999999999999998776665


Q ss_pred             cccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccC
Q 005038          480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN  559 (717)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  559 (717)
                      +..+                                                     ++|+.|++++|++++..+..+..
T Consensus       153 ~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          153 FDKL-----------------------------------------------------TNLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             TTTC-----------------------------------------------------TTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hccC-----------------------------------------------------ccCCEEECCCCCcCccCHHHhcC
Confidence            5443                                                     37999999999999888878899


Q ss_pred             CccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC
Q 005038          560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA  633 (717)
Q Consensus       560 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  633 (717)
                      +++|++|++++|++++..|..+..+++|++|++++|++.+.       +++|+.++++.|.++|.+|.+++.+.
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            99999999999999988888899999999999999999854       45788999999999999999765543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.4e-22  Score=198.24  Aligned_cols=86  Identities=26%  Similarity=0.365  Sum_probs=36.2

Q ss_pred             cCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038          289 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  368 (717)
Q Consensus       289 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  368 (717)
                      ..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++
T Consensus        60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            3344444444444444321  13344444444444444444333333444444444444444444333333444444444


Q ss_pred             EEccCCcC
Q 005038          369 LDISDNNI  376 (717)
Q Consensus       369 L~l~~n~~  376 (717)
                      |++++|.+
T Consensus       138 L~L~~n~l  145 (272)
T 3rfs_A          138 LNLAHNQL  145 (272)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            44444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.7e-22  Score=193.22  Aligned_cols=181  Identities=25%  Similarity=0.276  Sum_probs=149.0

Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      .+.++++++.+. .++.. +  .+++++|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            344444444442 33433 2  2578899999999988888888889999999999999998888888899999999999


Q ss_pred             CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038          469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  548 (717)
Q Consensus       469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  548 (717)
                      +|++++..+..|..+                                                     ++|++|+|++|+
T Consensus        92 ~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~L~~N~  118 (251)
T 3m19_A           92 NNQLASLPLGVFDHL-----------------------------------------------------TQLDKLYLGGNQ  118 (251)
T ss_dssp             TSCCCCCCTTTTTTC-----------------------------------------------------TTCCEEECCSSC
T ss_pred             CCcccccChhHhccc-----------------------------------------------------CCCCEEEcCCCc
Confidence            999887766655543                                                     379999999999


Q ss_pred             cCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      +++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            997777778999999999999999997777789999999999999999998878889999999999999999998733

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.2e-21  Score=187.99  Aligned_cols=181  Identities=23%  Similarity=0.292  Sum_probs=163.4

Q ss_pred             CcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccC
Q 005038          412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN  491 (717)
Q Consensus       412 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  491 (717)
                      ...++++++++.++ .+|..+.  +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+.       
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence            45789999999998 4555444  6899999999999998888999999999999999999987776665543       


Q ss_pred             CCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCc
Q 005038          492 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  571 (717)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  571 (717)
                                                                    .|+.|++++|++++..+..|..+++|++|+|++|
T Consensus        84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                          7999999999999888888999999999999999


Q ss_pred             ccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCC
Q 005038          572 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG  648 (717)
Q Consensus       572 ~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~  648 (717)
                      ++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+..++.+.+.+|++.|.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99988777899999999999999999977777899999999999999999988887888899999999999999998

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=7.4e-23  Score=212.19  Aligned_cols=262  Identities=20%  Similarity=0.180  Sum_probs=148.9

Q ss_pred             EEccCcccCccCcccccCCCCCCeEECcCCcCcccCc----ccccCCC-CCCEEEccCCcCcCcCCcccCCC-----CCC
Q 005038          273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP----QSLSKCS-SLEGLYLNNNSLLGKIPRWLGNL-----TRL  342 (717)
Q Consensus       273 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L  342 (717)
                      +++++|.+++.++..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5666777766665555555557777777777665554    5566666 67777777776665555444443     666


Q ss_pred             CEEEccCCcccCCccccc----CCC-CCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCC-CCcCCE
Q 005038          343 QYIIMPNNHLEGPIPVEF----CQL-DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVT  416 (717)
Q Consensus       343 ~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~  416 (717)
                      +.|++++|.+++..+..+    ..+ ++|++|++++|.+.+..+..                   + ...+.. .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------------------l-~~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE-------------------F-KQAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-------------------H-HHHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-------------------H-HHHHHhCCCceeE
Confidence            666666666665444432    222 56666666666554321110                   0 011333 357888


Q ss_pred             EeCCCCcCCccc----chhhhCCC-CCcEEEcCCCccccccchhc----cCC-CCCCEEEccCCcCccCCCccccccccc
Q 005038          417 LDLSYNRLNGSI----PDWVDGLS-QLSHLILGHNNLEGEVSVQL----CEL-NQLQLLDLSNNNLHGPIPPCFDNTTLH  486 (717)
Q Consensus       417 L~L~~n~~~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~  486 (717)
                      |++++|.+.+..    +..+..++ +|++|++++|++++..+..+    ..+ ++|+.|++++|.+++.....+...-  
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l--  220 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF--  220 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH--
Confidence            888888777433    23344444 78888888887776555433    334 4777777777776542211110000  


Q ss_pred             ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc----ccccCCcc
Q 005038          487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP----PQIGNLTR  562 (717)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~  562 (717)
                                                                    ....++|+.|+|++|.+.+..+    ..+..+++
T Consensus       221 ----------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          221 ----------------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             ----------------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred             ----------------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence                                                          0001257777777777765444    22455667


Q ss_pred             CCeEeCCCcccCCCC-------CcCCCCCCCCCEEECCCCcCCccCc
Q 005038          563 IQTLNLSHNNLTGSI-------PSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       563 L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      |++|+|++|.+.++.       +..+..+++|+.||+++|++....+
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            777777777644322       2345566667777777777665443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.7e-23  Score=212.51  Aligned_cols=129  Identities=20%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             EEccCCccccccchhhhhCCCCCCEEEccCcccCccCc----ccccCCC-CCCeEECcCCcCcccCcccccCC-----CC
Q 005038          248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF----SRNFNLT-NLQWLQLEGNRFVGEIPQSLSKC-----SS  317 (717)
Q Consensus       248 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  317 (717)
                      ++++.|.+++.+|... ...++|++|++++|.+++..+    ..+..++ +|++|+|++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3455555554333332 223345555555555554443    4444455 55555555555554444444332     55


Q ss_pred             CCEEEccCCcCcCcCCcc----cCCC-CCCCEEEccCCcccCCccccc----CC-CCCCCEEEccCCcCc
Q 005038          318 LEGLYLNNNSLLGKIPRW----LGNL-TRLQYIIMPNNHLEGPIPVEF----CQ-LDSLQILDISDNNIS  377 (717)
Q Consensus       318 L~~L~L~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~  377 (717)
                      |++|++++|.+.+..+..    +..+ ++|+.|++++|.+++..+..+    .. .++|++|++++|.+.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            555555555555433332    2222 455555555555554433322    22 235555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4e-21  Score=186.78  Aligned_cols=196  Identities=21%  Similarity=0.202  Sum_probs=121.0

Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcc-cCccCcccccCCCCCCeEECcC-CcCcccCcccccCCCCCCEE
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGL  321 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  321 (717)
                      +|++|++++|.++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5666666666665 4444444456666666666664 5555555566666666666666 66665555566666666666


Q ss_pred             EccCCcCcCcCCcccCCCCCCC---EEEccCC-cccCCcccccCCCCCCC-EEEccCCcCcccCCCccccccccEEeccC
Q 005038          322 YLNNNSLLGKIPRWLGNLTRLQ---YIIMPNN-HLEGPIPVEFCQLDSLQ-ILDISDNNISGSLPSCFHPLSIKQVHLSK  396 (717)
Q Consensus       322 ~L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  396 (717)
                      ++++|.+.+ +|. |..+++|+   .|++++| .+++..+..|..+++|+ +|++++|++..                  
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------------------  170 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------------------  170 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------------------
Confidence            666666654 444 55666666   6777776 66655555566677777 77777666652                  


Q ss_pred             cccccccCccccCCCCcCCEEeCCCCc-CCcccchhhhCC-CCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          397 NMLHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       397 n~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                            ++...|.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       171 ------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          171 ------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             ------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             ------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence                  22233444 567777777774 665555666666 7777777777777644333   4567777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3e-21  Score=187.68  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             ccc-eeeCCCCccCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCC-CCCCEEECCCCcCCccCchhhcCCCCCCEE
Q 005038          538 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVF  614 (717)
Q Consensus       538 ~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L  614 (717)
                      .|+ .|++++|+++...+..+.. ++|++|++++|+ ++++.+..|.++ ++|++|++++|++++ +|..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence            344 4444444444222222333 455555555553 554444555555 555555555555553 2222  34455555


Q ss_pred             eccCC
Q 005038          615 SVAYN  619 (717)
Q Consensus       615 ~l~~N  619 (717)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            55544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=6.4e-22  Score=200.46  Aligned_cols=209  Identities=22%  Similarity=0.260  Sum_probs=122.3

Q ss_pred             CCCCEEEccCCcccCCccccc--CCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEE
Q 005038          340 TRLQYIIMPNNHLEGPIPVEF--CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  417 (717)
Q Consensus       340 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  417 (717)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.                    ++...+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence            345555555555555555444  5555555555555555432111                    001113345666677


Q ss_pred             eCCCCcCCcccchhhhCCCCCcEEEcCCCccccc---c-chhccCCCCCCEEEccCCcCccCCCcccccccccccccCCC
Q 005038          418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE---V-SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  493 (717)
Q Consensus       418 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  493 (717)
                      ++++|.+.+..+..+..+++|++|++++|++.+.   . +..+..+++|++|++++|+++...+... ..          
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l----------  219 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-AL----------  219 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-HH----------
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-HH----------
Confidence            7777766666666666667777777777765432   1 1223456677777777776642111000 00          


Q ss_pred             CCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCC---ccCCeEeCCC
Q 005038          494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSH  570 (717)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~  570 (717)
                                                             ...+++|++|+|++|++.+..|..+..+   ++|++|+|++
T Consensus       220 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          220 ---------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             ---------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             ---------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                   0112367777777777776666666555   5788888888


Q ss_pred             cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038          571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  623 (717)
Q Consensus       571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~  623 (717)
                      |+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8877 5565553  6788888888888743 33 5677778888888887763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.8e-22  Score=205.24  Aligned_cols=252  Identities=18%  Similarity=0.190  Sum_probs=149.8

Q ss_pred             CCeEECcCCcCcccCcccccCC--CCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEE
Q 005038          294 LQWLQLEGNRFVGEIPQSLSKC--SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILD  370 (717)
Q Consensus       294 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~  370 (717)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            445555555443   2233333  4555566655555544333 33456666666666665533 445555666666666


Q ss_pred             ccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCc-ccchhhhCCCCCcEEEcCCC-c
Q 005038          371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNG-SIPDWVDGLSQLSHLILGHN-N  447 (717)
Q Consensus       371 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~  447 (717)
                      +++|.+.+.                       .+. .+..+++|++|++++| .+++ .++..+..+++|++|++++| .
T Consensus       125 L~~~~l~~~-----------------------~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          125 LEGLRLSDP-----------------------IVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             CTTCBCCHH-----------------------HHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             CcCcccCHH-----------------------HHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence            666654421                       111 1445666777777766 4553 24455666777777777777 6


Q ss_pred             cccc-cchhccCCC-CCCEEEccCCc--Cc-cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEE
Q 005038          448 LEGE-VSVQLCELN-QLQLLDLSNNN--LH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF  522 (717)
Q Consensus       448 l~~~-~~~~l~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (717)
                      +++. .+..+..++ +|++|++++|.  ++ +.++..+.                                         
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-----------------------------------------  219 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-----------------------------------------  219 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------------------------------------
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------------------------------------
Confidence            6643 355566677 77777777773  32 11111111                                         


Q ss_pred             eeccceeeeccccccccceeeCCCCc-cCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038          523 TTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGK  600 (717)
Q Consensus       523 ~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~  600 (717)
                                  .+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +...
T Consensus       220 ------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          220 ------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             ------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             ------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence                        13467778888877 555666778888899999999885 32222225778899999999998 4432


Q ss_pred             CchhhcCC-CCCCEEeccCCcCeecCCCCCc
Q 005038          601 IPHQLVEL-KTLEVFSVAYNNLSGEIPEWKA  630 (717)
Q Consensus       601 ~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~  630 (717)
                         .+..+ .+++.|++++|.+++..|.+.+
T Consensus       287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          287 ---TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ---HHHHHHhhCcceEEecccCccccCCccc
Confidence               23333 2366667899999988887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=6e-23  Score=215.24  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             ccceeeCCCCccC----CCCcccccCCccCCeEeCCCcccCCC----CCcCC--CCCCCCCEEECCCCcCCc----cCch
Q 005038          538 LLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGS----IPSTF--SNLKHVESLDLSNNKLNG----KIPH  603 (717)
Q Consensus       538 ~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~L~~N~i~~----~~p~  603 (717)
                      +|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    +|..+  +.+++|++|+|++|++++    .+|.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            5666666666653    34556677777777777777777654    34455  337778888888888775    3666


Q ss_pred             hh-cCCCCCCEEeccCCcCeecC
Q 005038          604 QL-VELKTLEVFSVAYNNLSGEI  625 (717)
Q Consensus       604 ~~-~~l~~L~~L~l~~N~l~~~~  625 (717)
                      .+ ..+++|++|++++|++++..
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhcCCCceEEEccCCcCCcch
Confidence            66 55778888888888877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.1e-21  Score=201.61  Aligned_cols=200  Identities=21%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             CCCEEEccCCccccccchhhhhCC--CCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCccc-CcccccCCCCCCE
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGC--VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE-IPQSLSKCSSLEG  320 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  320 (717)
                      .++.++++++.+.+   ..+. .+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~---~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH---HHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCH---HHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            36677777776652   2222 23  6777777777777655444 44567777777777776644 5556667777777


Q ss_pred             EEccCCcCcCcCCcccCCCCCCCEEEccCC-cccCC-cccccCCCCCCCEEEccCC-cCcccCCCccccccccEEeccCc
Q 005038          321 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLEGP-IPVEFCQLDSLQILDISDN-NISGSLPSCFHPLSIKQVHLSKN  397 (717)
Q Consensus       321 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n  397 (717)
                      |++++|.+.+..+..+..+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.                  
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence            777777666555666666667777777666 44431 3444555666666666666 44321                  


Q ss_pred             ccccccCccccCCCC-cCCEEeCCCC--cCC-cccchhhhCCCCCcEEEcCCCc-cccccchhccCCCCCCEEEccCCc
Q 005038          398 MLHGQLKRGTFFNCS-SLVTLDLSYN--RLN-GSIPDWVDGLSQLSHLILGHNN-LEGEVSVQLCELNQLQLLDLSNNN  471 (717)
Q Consensus       398 ~~~~~~~~~~~~~~~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~  471 (717)
                          .++ ..+..++ +|++|++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus       185 ----~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          185 ----HVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ----HHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ----HHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence                011 1134455 6666666666  333 2334445556666666666666 444445555556666666666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=8.7e-21  Score=192.12  Aligned_cols=226  Identities=19%  Similarity=0.177  Sum_probs=151.5

Q ss_pred             CCCEEEccCCCCcccCChhh--hhCCCCCCEEEccCCcCcccCccCc--CCCCCcCEEEccCCcCCccCC----cccccc
Q 005038          146 DLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVNDSLAGPFRLPI--HSHKRLRQLDVSNNNIRGHIP----VKIGDV  217 (717)
Q Consensus       146 ~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~~----~~~~~~  217 (717)
                      .++.+.+.++.+.......+  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..+. .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence            46777777766643211111  1234668888888888888777777  788888888888888875444    1122 4


Q ss_pred             CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccc--cc-hhhhhCCCCCCEEEccCcccCccCc--c-cccCC
Q 005038          218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IP-EHLAVGCVNLQFLALSNNNLQGHLF--S-RNFNL  291 (717)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~-~~~~~~~~~L~~L~L~~n~i~~~~~--~-~~~~l  291 (717)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++ ......+++|++|++++|.++....  . .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            67888888888888777777788888888888888876532  21 1222356777788888777753211  1 23566


Q ss_pred             CCCCeEECcCCcCcccCcccccCC---CCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKC---SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  368 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  368 (717)
                      ++|++|++++|++.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            777777777777776666555555   57777777777777 4555553  6777777777777754 22 556677777


Q ss_pred             EEccCCcCc
Q 005038          369 LDISDNNIS  377 (717)
Q Consensus       369 L~l~~n~~~  377 (717)
                      |++++|+++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=4.4e-22  Score=208.60  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=40.6

Q ss_pred             ccceeeCCCCccCCC----Ccccc--cCCccCCeEeCCCcccCC----CCCcCC-CCCCCCCEEECCCCcCCccCc
Q 005038          538 LLSGLDLSCNKLIGH----IPPQI--GNLTRIQTLNLSHNNLTG----SIPSTF-SNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      +|+.|+|++|.+++.    ++..+  +.+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..+
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            344444444444332    33444  236778888888888775    356555 557888888888888876653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.7e-20  Score=186.12  Aligned_cols=194  Identities=22%  Similarity=0.335  Sum_probs=146.5

Q ss_pred             CCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCE
Q 005038          337 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  416 (717)
Q Consensus       337 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  416 (717)
                      ..+++|+.|++++|.+... + .+..+++|++|++++|.+.+.                        +.  +..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~~   89 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKITE   89 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCCE
Confidence            3456777788877777643 3 466677777777777766532                        22  667788888


Q ss_pred             EeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCC
Q 005038          417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD  496 (717)
Q Consensus       417 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  496 (717)
                      |++++|.+.+.  ..+..+++|++|++++|++++..  .+..+++|+.|++++|.+++..+  +..              
T Consensus        90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------  149 (308)
T 1h6u_A           90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG--------------  149 (308)
T ss_dssp             EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred             EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence            88888888753  35778888888888888888643  37888888888888888865432  222              


Q ss_pred             cchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC
Q 005038          497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS  576 (717)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  576 (717)
                                                             ++.|+.|++++|++++..+  +..+++|++|++++|++++.
T Consensus       150 ---------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          150 ---------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             ---------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence                                                   3478889999998885433  88889999999999999865


Q ss_pred             CCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038          577 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  623 (717)
Q Consensus       577 ~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~  623 (717)
                      .+  +..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            43  7888999999999999985443  7889999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=3e-20  Score=187.49  Aligned_cols=148  Identities=25%  Similarity=0.405  Sum_probs=71.9

Q ss_pred             CCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEE
Q 005038          290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL  369 (717)
Q Consensus       290 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  369 (717)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.  ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            45556666666665553 22 35555555555555555543222  45555555555555555432  234444445555


Q ss_pred             EccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccc
Q 005038          370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE  449 (717)
Q Consensus       370 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  449 (717)
                      ++++|.+.+                        ++  .+..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       113 ~l~~n~l~~------------------------~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          113 DLTSTQITD------------------------VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECTTSCCCC------------------------CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCC------------------------ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            554444431                        11  14444555555555555553322  445555555555555554


Q ss_pred             cccchhccCCCCCCEEEccCCcCc
Q 005038          450 GEVSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       450 ~~~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                      +..+  +..+++|+.|++++|.++
T Consensus       165 ~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          165 DLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CChh--hcCCCCCCEEECCCCccC
Confidence            3222  444444555554444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.4e-20  Score=179.69  Aligned_cols=196  Identities=20%  Similarity=0.269  Sum_probs=156.1

Q ss_pred             CEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCC
Q 005038          415 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS  494 (717)
Q Consensus       415 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~  494 (717)
                      +.++++++.++. +|..+.  ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|..+.          
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            679999999884 455443  7899999999999988888899999999999999999988787776644          


Q ss_pred             CCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccC
Q 005038          495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  574 (717)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  574 (717)
                                                                 +|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       7999999999999777777899999999999999999


Q ss_pred             CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCCCC
Q 005038          575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC  654 (717)
Q Consensus       575 ~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~~C  654 (717)
                      +..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+     +..+..+ +..++..-  ....|
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~-----l~~l~~~-l~~~~~~~--~~~~C  189 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH-----LKWLADY-LHTNPIET--SGARC  189 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG-----GHHHHHH-HHHCCCBC--SCCBE
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc-----cHHHHHH-HHhCCCCc--cCCCc
Confidence            8889999999999999999999998888889999999999999999987543     1111111 11122111  11248


Q ss_pred             CCCCCCCCCCCCCCCCCccc
Q 005038          655 RSPATMPEASIGNEQDDNLI  674 (717)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~  674 (717)
                      ..|...+++.+.....+++.
T Consensus       190 ~~P~~l~g~~l~~l~~~~~~  209 (220)
T 2v9t_B          190 TSPRRLANKRIGQIKSKKFR  209 (220)
T ss_dssp             EESGGGTTCBGGGSCGGGCC
T ss_pred             CCchHHcCCchhhCCHHHCc
Confidence            88888888777666655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1.2e-19  Score=186.85  Aligned_cols=243  Identities=17%  Similarity=0.152  Sum_probs=141.6

Q ss_pred             CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038          197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS  276 (717)
Q Consensus       197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~  276 (717)
                      ++++.++++++ .+|..+.   +++++|++++|+++...+.+|.++++|++|+|++|.+.+.++...+.++++++++   
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~---   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI---   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence            45666666666 5554432   3455555555555543334455555555555555554434444444444443321   


Q ss_pred             CcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccC-CcccCC
Q 005038          277 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGP  355 (717)
Q Consensus       277 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~  355 (717)
                                          +.+++|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...
T Consensus        85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence                                23333444444444455555555555555555433333344444455555543 344433


Q ss_pred             cccccCCCC-CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC
Q 005038          356 IPVEFCQLD-SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG  434 (717)
Q Consensus       356 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  434 (717)
                      .+..|..+. .++.|++++|+++...+..+...+++++++.++...+.++..+|..+++|++|++++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            344444443 4667777777777666666666777777777655556788878999999999999999999654444   


Q ss_pred             CCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       435 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                      +.+|+.|.+.++.-....| .+..+++|+.+++.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4566667665554333455 4788999999999764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.5e-19  Score=186.31  Aligned_cols=79  Identities=22%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             ccceeeCCC-CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          538 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      .|+.|++++ |.++...+..|.++++|++|+|++|+++.+.+..   +.+|++|.+.++.-...+| .+..+++|+.+++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l  253 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASL  253 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence            355566653 4444333345666666666666666666333323   3345555554444444555 3556666666666


Q ss_pred             cCCc
Q 005038          617 AYNN  620 (717)
Q Consensus       617 ~~N~  620 (717)
                      +++.
T Consensus       254 ~~~~  257 (350)
T 4ay9_X          254 TYPS  257 (350)
T ss_dssp             SCHH
T ss_pred             CCCc
Confidence            5543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.1e-19  Score=170.46  Aligned_cols=163  Identities=26%  Similarity=0.290  Sum_probs=139.7

Q ss_pred             CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038          411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  490 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  490 (717)
                      .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+       
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------   99 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL-------   99 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc-------
Confidence            3688999999999987777778889999999999999997777778899999999999999887666555443       


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038          491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  570 (717)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  570 (717)
                                                                    ++|+.|++++|++++..+..+..+++|++|++++
T Consensus       100 ----------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          100 ----------------------------------------------TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             ----------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ----------------------------------------------cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                          3799999999999987777789999999999999


Q ss_pred             cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC
Q 005038          571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA  633 (717)
Q Consensus       571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  633 (717)
                      |++++..+..|..+++|++|++++|++.+       .+++|+.|+++.|.++|.+|.+++.+.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            99998777779999999999999998874       456899999999999999998765543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=6.8e-20  Score=174.92  Aligned_cols=157  Identities=23%  Similarity=0.278  Sum_probs=139.9

Q ss_pred             CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCcccccccccccccCC
Q 005038          414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS  492 (717)
Q Consensus       414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  492 (717)
                      -+.+++++|.++. +|..+.  +.+++|++++|++++..+ ..+..+++|+.|++++|.+++..+..|..+.        
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------   81 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------   81 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC--------
Confidence            3689999999985 565443  567999999999998754 5588999999999999999987776666544        


Q ss_pred             CCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcc
Q 005038          493 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  572 (717)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  572 (717)
                                                                   .|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        82 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           82 ---------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             ---------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             ---------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence                                                         79999999999998888889999999999999999


Q ss_pred             cCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          573 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       573 l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      +++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++.+.++
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999889999999999999999999998889999999999999999999998766

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=7.4e-19  Score=167.72  Aligned_cols=157  Identities=19%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  467 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  467 (717)
                      -+.+++++|.+. .++.. +  .+.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            346777777764 34443 2  2345777777777776533 44677777777777777777766667777777777777


Q ss_pred             cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      ++|.+++..+..|..+.                                                     .|++|+|++|
T Consensus        89 s~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N  115 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLE-----------------------------------------------------SLKTLMLRSN  115 (220)
T ss_dssp             CSSCCCCCCGGGGTTCS-----------------------------------------------------SCCEEECTTS
T ss_pred             CCCccCccCHhHhcCCc-----------------------------------------------------CCCEEECCCC
Confidence            77777766655554433                                                     6777777777


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  602 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p  602 (717)
                      ++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+..+
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            7777777777777777777777777777767777777777777777777765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.4e-19  Score=187.20  Aligned_cols=179  Identities=27%  Similarity=0.295  Sum_probs=126.9

Q ss_pred             cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhh-CCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD-GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      +.++++++.+. .+|.. +  .+.++.|+|++|.+++..+..+. ++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56777777764 34443 2  24577888888888776666676 77888888888888887777777788888888888


Q ss_pred             CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038          469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  548 (717)
Q Consensus       469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  548 (717)
                      +|++++..+..|..+.                                                     +|+.|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence            8887766555554433                                                     67778888888


Q ss_pred             cCCCCcccccCCccCCeEeCCCcccCCCCCcCC---CCCCCCCEEECCCCcCCccCchhhcCCCC--CCEEeccCCcCee
Q 005038          549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF---SNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSG  623 (717)
Q Consensus       549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~i~~~~p~~~~~l~~--L~~L~l~~N~l~~  623 (717)
                      +.+..|..|..+++|++|+|++|++++..+..|   ..+++|+.|+|++|++++..+..+..++.  ++.|++++|++.+
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            777777777778888888888888875444445   45777888888888887655566777766  3777788887776


Q ss_pred             cC
Q 005038          624 EI  625 (717)
Q Consensus       624 ~~  625 (717)
                      .+
T Consensus       204 ~C  205 (361)
T 2xot_A          204 DC  205 (361)
T ss_dssp             CH
T ss_pred             Cc
Confidence            53

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.1e-18  Score=166.41  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=125.3

Q ss_pred             ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      -+.++++++.+. .+|.. +  .+++++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            356777777774 45543 2  2678899999998887777788888899999999999988888888889999999999


Q ss_pred             CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038          469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  548 (717)
Q Consensus       469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  548 (717)
                      +|.+++..+..|..+.                                                     +|+.|+|++|+
T Consensus        89 ~N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~  115 (220)
T 2v9t_B           89 GNKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANK  115 (220)
T ss_dssp             SSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCC
Confidence            9988866665554433                                                     78889999999


Q ss_pred             cCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038          549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK  600 (717)
Q Consensus       549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~  600 (717)
                      +.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+.
T Consensus       116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            8888888888889999999999999877777888888999999999988753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.8e-18  Score=164.08  Aligned_cols=130  Identities=28%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  323 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  323 (717)
                      +|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555555555554 334333334455555555555544433334444444555555444444333333444444444444


Q ss_pred             cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCC
Q 005038          324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN  374 (717)
Q Consensus       324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  374 (717)
                      ++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            444444333333444444444444444444333333444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.1e-18  Score=185.17  Aligned_cols=187  Identities=24%  Similarity=0.331  Sum_probs=119.0

Q ss_pred             CCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCC
Q 005038          341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS  420 (717)
Q Consensus       341 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  420 (717)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++                        .++    ..+++|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~------------------------~ip----~~l~~L~~L~Ls  108 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI------------------------SLP----ELPASLEYLDAC  108 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS------------------------CCC----CCCTTCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc------------------------ccc----cccCCCCEEEcc
Confidence            66666666666664 34333  255666666666655                        233    124667777777


Q ss_pred             CCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchh
Q 005038          421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFE  500 (717)
Q Consensus       421 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (717)
                      +|.+++ +|. +.+  +|+.|++++|++++ +|.   .+++|+.|++++|.+++ +|.   .                  
T Consensus       109 ~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~------------------  158 (571)
T 3cvr_A          109 DNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L------------------  158 (571)
T ss_dssp             SSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C------------------
T ss_pred             CCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c------------------
Confidence            777765 444 443  77777777777775 333   46777777777777764 222   0                  


Q ss_pred             hhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcC
Q 005038          501 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPST  580 (717)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  580 (717)
                                                         +++|+.|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+|. 
T Consensus       159 -----------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          159 -----------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             -----------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence                                               2357777777777775 444 54  77777777777777 5555 


Q ss_pred             CCCCCCC-------CEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc
Q 005038          581 FSNLKHV-------ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  632 (717)
Q Consensus       581 ~~~l~~L-------~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  632 (717)
                      |..  +|       +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            544  56       77888888877 567666677888888888888877777655444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.6e-18  Score=162.79  Aligned_cols=156  Identities=24%  Similarity=0.237  Sum_probs=120.8

Q ss_pred             CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCC
Q 005038          414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  493 (717)
Q Consensus       414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  493 (717)
                      .+.++.+++.+. .+|..+  .++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+          
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l----------   87 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----------   87 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC----------
Confidence            456777777776 344433  2678888888888887777777778888888888888765555544443          


Q ss_pred             CCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCccc
Q 005038          494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  573 (717)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  573 (717)
                                                                 +.|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus        88 -------------------------------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           88 -------------------------------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             -------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -------------------------------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                       3688888888888877777788888999999999998


Q ss_pred             CCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038          574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  626 (717)
Q Consensus       574 ~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  626 (717)
                      + .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8 678888888999999999999987666778888999999999999887765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.8e-18  Score=162.71  Aligned_cols=157  Identities=22%  Similarity=0.256  Sum_probs=139.2

Q ss_pred             CCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccc
Q 005038          437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN  516 (717)
Q Consensus       437 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (717)
                      +.+.++.+++.++.. |..+  .++|++|++++|.+++..|..|..+.                                
T Consensus        20 s~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------   64 (229)
T 3e6j_A           20 SGTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLI--------------------------------   64 (229)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred             eCCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence            367899999999844 4433  38999999999999988887776544                                


Q ss_pred             cceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCc
Q 005038          517 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK  596 (717)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  596 (717)
                                           .|+.|+|++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                 79999999999987777788999999999999999998878889999999999999999


Q ss_pred             CCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          597 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       597 i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      ++ .+|..+..+++|++|++++|++++..+..+..+..++.+.+.+||+.|+|+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99 788999999999999999999998777778889999999999999999985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.7e-18  Score=177.55  Aligned_cols=112  Identities=26%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             CEEEccCCcCcccCCCccccccccEEeccCcccccccCccccC-CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC
Q 005038          367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH  445 (717)
Q Consensus       367 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  445 (717)
                      +.++++++.+... |..+ +..++.|++++|.+.+ ++...|. .+++|++|+|++|++.+..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~i-P~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSC-CSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcc-CccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3455555555432 2111 2335555555555533 2222244 555555555555555544444555555555555555


Q ss_pred             CccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038          446 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD  481 (717)
Q Consensus       446 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  481 (717)
                      |++++..+..|..+++|+.|+|++|++++..|..|.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence            555555454555555555555555555544444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.3e-17  Score=166.67  Aligned_cols=152  Identities=26%  Similarity=0.383  Sum_probs=123.8

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      +..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|+.|++++|.+++.  ..+.      
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~------  131 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV------  131 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence            6667889999999998886544  88889999999999998853  3488889999999999988653  1122      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  567 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  567 (717)
                                                                     .++.|+.|++++|++++.  ..+..+++|++|+
T Consensus       132 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A          132 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             -----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence                                                           234799999999998865  5788999999999


Q ss_pred             CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038          568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      +++|.+++..|  +..+++|++|++++|++++ +| .+..+++|+.|++++|+++..
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            99999996654  8899999999999999985 45 488999999999999998853

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.5e-17  Score=179.79  Aligned_cols=188  Identities=28%  Similarity=0.368  Sum_probs=131.0

Q ss_pred             CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038          317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  396 (717)
Q Consensus       317 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  396 (717)
                      +++.|++++|.+.+ +|..+.  ++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +            
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l------------  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L------------  118 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C------------
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h------------
Confidence            89999999999986 666553  78999999999999 455   457899999999998875 332 1            


Q ss_pred             cccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCC
Q 005038          397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI  476 (717)
Q Consensus       397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  476 (717)
                                  ..  +|++|++++|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +
T Consensus       119 ------------~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          119 ------------PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             ------------CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             ------------hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence                        11  56666666666664 343   45667777777777665 332   45667777777777664 3


Q ss_pred             CcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccc
Q 005038          477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  556 (717)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  556 (717)
                      |. +.                                                       ++|+.|+|++|+++ .+|. 
T Consensus       176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred             ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence            32 21                                                       15777777777776 4444 


Q ss_pred             ccCCccC-------CeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038          557 IGNLTRI-------QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  609 (717)
Q Consensus       557 l~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~  609 (717)
                      +..  +|       +.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            443  56       88888888888 5677777788888888888888888887776644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=4.2e-17  Score=151.96  Aligned_cols=135  Identities=23%  Similarity=0.369  Sum_probs=103.6

Q ss_pred             ccceeeCCCCccCCCCcc-cccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          538 LLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      .++.|++++|++.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            577788888888766554 3777888888888888888777778888888888888888888777777778888888888


Q ss_pred             cCCcCeecCCCCCcccCCCCcccccCCcCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCc
Q 005038          617 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL----------------PICRSPATMPEASIGNEQDDN  672 (717)
Q Consensus       617 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l----------------~~C~~~~~~~~~~~~~~~~~~  672 (717)
                      ++|++++..|..+..+..++.+.+.+|++.|+|++                ..|..|...++..+.+.....
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~  181 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence            88888887777777777788888888888887764                138888888887665555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.2e-17  Score=153.65  Aligned_cols=154  Identities=16%  Similarity=0.263  Sum_probs=120.1

Q ss_pred             CCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038          409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  488 (717)
Q Consensus       409 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  488 (717)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+     
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-----  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL-----  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCC-----
Confidence            45577888888888887 344 57788888888888887663  3467788889999998888876555555443     


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038          489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  568 (717)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  568 (717)
                                                                      ++|+.|++++|++++..+..+..+++|++|++
T Consensus       112 ------------------------------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          112 ------------------------------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             ------------------------------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             ------------------------------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                            37888999999988777888899999999999


Q ss_pred             CCcc-cCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038          569 SHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  623 (717)
Q Consensus       569 s~n~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~  623 (717)
                      ++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998 66 445 68889999999999999985 44 68889999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.5e-17  Score=152.33  Aligned_cols=135  Identities=21%  Similarity=0.338  Sum_probs=115.4

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .++.|++++|+++ .+|..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            6889999999998 667889999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCcc
Q 005038          618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMPEASIGNEQDDNL  673 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~  673 (717)
                      +|.++...+..+..+..++.+.+.+||+.|+|.+.                .|..|....++.+.....+.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~  182 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF  182 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence            99999766666788888999999999999988541                388888888877766665544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=9.8e-17  Score=160.18  Aligned_cols=169  Identities=24%  Similarity=0.349  Sum_probs=95.4

Q ss_pred             CCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCE
Q 005038          193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF  272 (717)
Q Consensus       193 ~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  272 (717)
                      +++|++|++++|.++ .++.  ...+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++|++
T Consensus        45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred             cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCE
Confidence            344555555555444 2221  2224455555555555543322  556666666666666665 3333  234666666


Q ss_pred             EEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcc
Q 005038          273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL  352 (717)
Q Consensus       273 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  352 (717)
                      |++++|.+++.  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666666542  3455666666666666666643  346666666666666666664333  66666666666666666


Q ss_pred             cCCcccccCCCCCCCEEEccCCcCc
Q 005038          353 EGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       353 ~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ++. + .+..+++|+.|++++|++.
T Consensus       191 ~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          191 SDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCC-h-hhccCCCCCEEECcCCccc
Confidence            643 2 3666666777777666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.7e-16  Score=173.82  Aligned_cols=152  Identities=26%  Similarity=0.375  Sum_probs=109.2

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      +..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+.+. + .+.      
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~-~l~------  128 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI-N-GLV------  128 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC-c-ccc------
Confidence            5667777788888777775544  67777888888888877743  2577777888888888777642 1 111      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  567 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  567 (717)
                                                                     .++.|+.|+|++|++.+.  ..+..+++|+.|+
T Consensus       129 -----------------------------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A          129 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             -----------------------------------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             -----------------------------------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence                                                           134678888888887754  5677788888888


Q ss_pred             CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038          568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      |++|.+++..|  +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++.
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            88888876555  77788888888888888743 3 577788888888888887754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.2e-17  Score=161.02  Aligned_cols=168  Identities=20%  Similarity=0.246  Sum_probs=135.9

Q ss_pred             cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038          388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  467 (717)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  467 (717)
                      .+..++++++.+.+..   .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|++++..+  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3445555555554322   26678899999999999885 44 68889999999999999997655  889999999999


Q ss_pred             cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038          468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  547 (717)
Q Consensus       468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  547 (717)
                      ++|++++..+...                                                        +.|+.|++++|
T Consensus        93 ~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N  116 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNN  116 (263)
T ss_dssp             CSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSS
T ss_pred             CCCccCCcCcccc--------------------------------------------------------CcccEEEccCC
Confidence            9999875332110                                                        26999999999


Q ss_pred             ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038          548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      ++++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       117 ~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          117 ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99864  3689999999999999999965 3 688999999999999999866  6788999999999999999865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=4.8e-17  Score=165.96  Aligned_cols=287  Identities=14%  Similarity=0.103  Sum_probs=142.3

Q ss_pred             CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC--ccCcccccCCCCCCeEECcCCcCcccCcccccC-----
Q 005038          242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK-----  314 (717)
Q Consensus       242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  314 (717)
                      +.+++.|.++++ +...-...+...+++|++|||++|++.  ......   ++.++.+.+..+.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence            345566666543 111111122222566777777766665  211111   1223444444442   22344555     


Q ss_pred             ---CCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccE
Q 005038          315 ---CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ  391 (717)
Q Consensus       315 ---l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  391 (717)
                         +++|+.+++.+ .++...+.+|.++++|+.+++++|.+..+.+.+|.++.++..+....+......           
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------  164 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------  164 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc-----------
Confidence               66677776666 555555556666667777777666666555666666555555544432110000           


Q ss_pred             EeccCcccccccCccccCCCCcCC-EEeCCCCcCCcccchhh-h---CCCCCcEEEcCCCccccccchhc-cCCCCCCEE
Q 005038          392 VHLSKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSIPDWV-D---GLSQLSHLILGHNNLEGEVSVQL-CELNQLQLL  465 (717)
Q Consensus       392 L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~-~---~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L  465 (717)
                               ..+...+|.++..|+ .+.+....   .++..+ .   ...+++.+.+.++-.. .....+ ..+++|+.+
T Consensus       165 ---------~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l  231 (329)
T 3sb4_A          165 ---------NRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSL  231 (329)
T ss_dssp             ---------TTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEE
T ss_pred             ---------ccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEE
Confidence                     012222244444444 33332211   111111 1   1234444444433211 111111 124555555


Q ss_pred             EccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCC
Q 005038          466 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS  545 (717)
Q Consensus       466 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~  545 (717)
                      ++++|+++.+.+.+|..+.                                                     +|+.++|.
T Consensus       232 ~L~~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~  258 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLP  258 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECC
T ss_pred             ECCCCCcceecHhhhhCCC-----------------------------------------------------CCCEEECC
Confidence            5555555544444444432                                                     45555555


Q ss_pred             CCccCCCCcccccCCccCC-eEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038          546 CNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  615 (717)
Q Consensus       546 ~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~  615 (717)
                      +| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+..|.++++|+.++
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            55 4445555666777776 777766 56655566677777777777777777666666777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1e-16  Score=149.24  Aligned_cols=87  Identities=25%  Similarity=0.405  Sum_probs=41.5

Q ss_pred             cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038          539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  618 (717)
Q Consensus       539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~  618 (717)
                      |++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            44444444444444444444444444555555544444444444445555555555555444444444445555555555


Q ss_pred             CcCeecC
Q 005038          619 NNLSGEI  625 (717)
Q Consensus       619 N~l~~~~  625 (717)
                      |++.+.+
T Consensus       136 N~l~c~c  142 (192)
T 1w8a_A          136 NPFNCNC  142 (192)
T ss_dssp             CCBCCSG
T ss_pred             CCccCcC
Confidence            5544443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2e-16  Score=173.16  Aligned_cols=83  Identities=24%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             cCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038          240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE  319 (717)
Q Consensus       240 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  319 (717)
                      ..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|++|+|++|.+.+. + .+..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred             hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence            34455555555555554 3332  1234555555555555543322  44444455555555444421 1 344444444


Q ss_pred             EEEccCCcCc
Q 005038          320 GLYLNNNSLL  329 (717)
Q Consensus       320 ~L~L~~n~~~  329 (717)
                      .|++++|.+.
T Consensus       113 ~L~Ls~N~l~  122 (605)
T 1m9s_A          113 SLSLEHNGIS  122 (605)
T ss_dssp             EEECTTSCCC
T ss_pred             EEEecCCCCC
Confidence            4444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.4e-17  Score=168.19  Aligned_cols=230  Identities=17%  Similarity=0.132  Sum_probs=158.0

Q ss_pred             cCCccccCC--------CCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccC
Q 005038           58 SISSSPLVH--------LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS  129 (717)
Q Consensus        58 ~i~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  129 (717)
                      .||..+|.+        +++|+.+++.+ .++ .++..+|.+|++|+.+++++|.+.......   +..+.++..+....
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a---F~~~~~l~~l~~~~  157 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEA---LADSVTAIFIPLGS  157 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTS---SCTTTCEEEECTTC
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhh---hcCCCceEEecCcc
Confidence            456667777        88888888887 565 466677888888888888888777655544   34455666666522


Q ss_pred             CC---CCCCCCchhhcCCCCCC-EEEccCCCCcccCChhhhhC---CCCCCEEEccCCcCcccCccCcCCCCCcCEEEcc
Q 005038          130 NY---GDGFIFPKFLYHQHDLE-YVDLSHIKMNGEFPNWLLEN---NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVS  202 (717)
Q Consensus       130 ~~---~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls  202 (717)
                      ..   .........+..+..|+ .+++....   .++..++..   ..+++.+.+.++-.......-...+++|+.++++
T Consensus       158 ~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~  234 (329)
T 3sb4_A          158 SDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS  234 (329)
T ss_dssp             THHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred             hhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence            11   11112234455666666 55554332   344443332   4456666666542221111111236788888888


Q ss_pred             CCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCC-EEEccCCccccccchhhhhCCCCCCEEEccCcccC
Q 005038          203 NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ-ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ  281 (717)
Q Consensus       203 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~  281 (717)
                      +|.++ .++...+..+++|+.+++..| +....+.+|.++++|+ .+++.+ .++ .++...|.+|++|+.++++.|.++
T Consensus       235 ~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          235 KTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence            88887 788888888888888888887 6667777899999999 999988 677 788888888999999999999998


Q ss_pred             ccCcccccCCCCCCeEEC
Q 005038          282 GHLFSRNFNLTNLQWLQL  299 (717)
Q Consensus       282 ~~~~~~~~~l~~L~~L~L  299 (717)
                      .+...+|.++++|+.++.
T Consensus       311 ~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECTTTTCTTCCCCEEEC
T ss_pred             ccchhhhcCCcchhhhcc
Confidence            888889999999998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=3.5e-15  Score=156.23  Aligned_cols=315  Identities=16%  Similarity=0.125  Sum_probs=147.7

Q ss_pred             eeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc
Q 005038            9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP   88 (717)
Q Consensus         9 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~   88 (717)
                      +|...||.++.+|+++.++. .++.+...+|.+|++|+.++++.+ ++ .|+..+|.++++|+.+.+..+- . .+...+
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a  135 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA  135 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence            45556677777777777763 355455566777777777777654 43 5665566666666666655432 1 233334


Q ss_pred             ccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhC
Q 005038           89 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN  168 (717)
Q Consensus        89 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  168 (717)
                      |.++..++........  .                            .-...|..+++|+.+.+..+..  .++...+.+
T Consensus       136 F~~~~~~~~~~~~~~~--~----------------------------i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~  183 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVT--V----------------------------IGDEAFATCESLEYVSLPDSME--TLHNGLFSG  183 (394)
T ss_dssp             TTTCCCSEEECCTTCC--E----------------------------ECTTTTTTCTTCCEEECCTTCC--EECTTTTTT
T ss_pred             eecccccccccCcccc--c----------------------------cchhhhcccCCCcEEecCCccc--eeccccccC
Confidence            5444333222211111  0                            0112344444444444443221  233333444


Q ss_pred             CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038          169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL  248 (717)
Q Consensus       169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  248 (717)
                      +.+|+.+.+..+ +.......+..+..|+.+.+..+...  +....+. ...|+.+.+... +.......+..+..++.+
T Consensus       184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~  258 (394)
T 4fs7_A          184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESI  258 (394)
T ss_dssp             CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred             CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeE
Confidence            455555544433 22222334444445554444433221  1111111 234444444322 121223344555555555


Q ss_pred             EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038          249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      .+..+..  .+....+..+..++.+......+.   ...|..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ +
T Consensus       259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v  331 (394)
T 4fs7_A          259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V  331 (394)
T ss_dssp             EECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             EcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence            5554422  233344444555555555443322   234445555555555443 33344445555555555555432 3


Q ss_pred             cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038          329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  373 (717)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  373 (717)
                      +.....+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            3334445555556666655544 3334445555566666665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.5e-16  Score=145.81  Aligned_cols=149  Identities=16%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             CCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEEC
Q 005038          220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL  299 (717)
Q Consensus       220 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  299 (717)
                      +|+.|++++|.+. .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4444444444444 223 3555666666666666554 332 2 234666777777777666656666667777777777


Q ss_pred             cCCcCcccCcccccCCCCCCEEEccCCc-CcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038          300 EGNRFVGEIPQSLSKCSSLEGLYLNNNS-LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       300 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      ++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++..  .+..+++|++|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            7777766566667777777777777776 44 333 4666777777777777776432  5666677777777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=6.1e-15  Score=153.32  Aligned_cols=266  Identities=11%  Similarity=0.111  Sum_probs=168.3

Q ss_pred             CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038          267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  346 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  346 (717)
                      +..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+....+..|.++++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            45566666653 3444445555553 5666666554 444444555553 466666554 34434444555555555555


Q ss_pred             ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc
Q 005038          347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  426 (717)
Q Consensus       347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  426 (717)
                      +.+|.++.+....|. ..+|+.+.+.                       .+ + ..+...+|.+|++|+.+++..+ ++.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp-----------------------~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLP-----------------------VT-L-KEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECC-----------------------TT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeC-----------------------Cc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence            555555443333443 3445555444                       22 1 3556667888888888888874 555


Q ss_pred             ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc-----cCCCcccccccccccccCCCCCCcchhh
Q 005038          427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLHESYSNSSSPDEQFEI  501 (717)
Q Consensus       427 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (717)
                      ....+|.+ .+|+.+.+ .+.++......|.++++|+.+++.+|.+.     .+.+.+|..                   
T Consensus       240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-------------------  298 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-------------------  298 (401)
T ss_dssp             ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred             cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence            66667777 78888888 45677677788888889999888877654     233333333                   


Q ss_pred             hhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCC
Q 005038          502 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF  581 (717)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  581 (717)
                                                        +++|+.+++.. .++.+...+|.++++|+.++|..+ ++.+.+.+|
T Consensus       299 ----------------------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          299 ----------------------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             ----------------------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             ----------------------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                                              23677777773 466566677888888888888654 665666778


Q ss_pred             CCCCCCCEEECCCCcCCccCchhhcCCC-CCCEEeccCCcCe
Q 005038          582 SNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS  622 (717)
Q Consensus       582 ~~l~~L~~L~L~~N~i~~~~p~~~~~l~-~L~~L~l~~N~l~  622 (717)
                      .++ +|+.+++++|.+....+..|..++ .++.|.+..+.+.
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            888 888888888887766666677664 6777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.4e-14  Score=150.64  Aligned_cols=264  Identities=11%  Similarity=0.078  Sum_probs=154.6

Q ss_pred             CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038          169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL  248 (717)
Q Consensus       169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  248 (717)
                      +..++.+.+.+ .++......|.++ +|+.+.+..+ ++ .++...+..+ +|+.+.+.. .+....+.+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            34555555543 2333334445554 5666666554 44 4444444432 566666654 4444555667777777777


Q ss_pred             EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038          249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      ++++|.++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.. .+|+.+.+.+ .+
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i  259 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV  259 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence            77777776 66666665 567777777633 65566667777777777777654 44455555655 5677776633 34


Q ss_pred             cCcCCcccCCCCCCCEEEccCCccc-----CCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038          329 LGKIPRWLGNLTRLQYIIMPNNHLE-----GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  403 (717)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  403 (717)
                      .......|.++++|+.+.+.++.+.     .+.+.+|.++++|+.+++.. .+.                        .+
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~------------------------~I  314 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR------------------------IL  314 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC------------------------EE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE------------------------EE
Confidence            4444556666666666666665543     23344555566666655542 222                        34


Q ss_pred             CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-CCCEEEccCCc
Q 005038          404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN  471 (717)
Q Consensus       404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~  471 (717)
                      ...+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ +++.|.+..+.
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            4455666677777777543 444555666666 677777777666655555566653 56666665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=5.2e-16  Score=152.30  Aligned_cols=169  Identities=19%  Similarity=0.244  Sum_probs=111.8

Q ss_pred             CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038          269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  348 (717)
Q Consensus       269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  348 (717)
                      ++..++++++.+++..  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4555566666665432  45566666777776666653 23 45666666666666666654332  5566666666666


Q ss_pred             CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCccc
Q 005038          349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  428 (717)
Q Consensus       349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  428 (717)
                      +|.+++..+  +.. ++|++|++++|.++                       + ++  .+..+++|++|++++|++++. 
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCCC-
Confidence            666654321  222 55555555555554                       2 21  277788999999999998864 


Q ss_pred             chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCC
Q 005038          429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI  476 (717)
Q Consensus       429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  476 (717)
                      + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++.+..
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            3 588889999999999999866  66888899999999999887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.5e-18  Score=187.19  Aligned_cols=87  Identities=31%  Similarity=0.428  Sum_probs=54.3

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccC-chhhcCCCCCCEEec
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~-p~~~~~l~~L~~L~l  616 (717)
                      .|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..+..+++|+.|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            5666666666666 455566666666666666666664 44 5666666666666666666554 666666666666666


Q ss_pred             cCCcCeecCCC
Q 005038          617 AYNNLSGEIPE  627 (717)
Q Consensus       617 ~~N~l~~~~p~  627 (717)
                      ++|++++..|.
T Consensus       541 ~~N~l~~~~~~  551 (567)
T 1dce_A          541 QGNSLCQEEGI  551 (567)
T ss_dssp             TTSGGGGSSSC
T ss_pred             cCCcCCCCccH
Confidence            66666655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2e-18  Score=188.02  Aligned_cols=77  Identities=25%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCC-CcCCCCCCCCCEEECCCCcCCccCch---hhcCCCCCCE
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVESLDLSNNKLNGKIPH---QLVELKTLEV  613 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~i~~~~p~---~~~~l~~L~~  613 (717)
                      +|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..|+.+++|+.|+|++|++++..|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            56666666666664 45 6777777777777777777665 77777777888888888877755442   2334777777


Q ss_pred             Eec
Q 005038          614 FSV  616 (717)
Q Consensus       614 L~l  616 (717)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=1.5e-14  Score=151.43  Aligned_cols=217  Identities=17%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038          238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS  317 (717)
Q Consensus       238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  317 (717)
                      +|.++++|+.+++..+ ++ .++...+.++.+|+.+.+..+ +......+|.++..++......  .......+|..+++
T Consensus        89 aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~  163 (394)
T 4fs7_A           89 AFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCES  163 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTT
T ss_pred             HhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhcccCC
Confidence            3444444444444432 33 344444444555554444322 2223333444433222221111  11123345555666


Q ss_pred             CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCc
Q 005038          318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  397 (717)
Q Consensus       318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  397 (717)
                      |+.+.+.++. .......|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... .....+....++.+.+...
T Consensus       164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~  240 (394)
T 4fs7_A          164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS  240 (394)
T ss_dssp             CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT
T ss_pred             CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC
Confidence            6666665432 2233445555666666666544 33234445556666665555443221 1222223334444444322


Q ss_pred             ccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038          398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  468 (717)
Q Consensus       398 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  468 (717)
                      .  ..+...+|..+..++.+.+..+... .....|..+..++.+....+.+   ....+..+.+|+.+.+.
T Consensus       241 ~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          241 F--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             C--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred             c--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence            1  1233444556666666666554332 3344555555565555544332   22334455555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=6.4e-15  Score=136.98  Aligned_cols=89  Identities=28%  Similarity=0.319  Sum_probs=69.5

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .|+.|+|++|++++..+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            56666666666666666677888888888888888887777788888888888888888886666678888888888888


Q ss_pred             CCcCeecCC
Q 005038          618 YNNLSGEIP  626 (717)
Q Consensus       618 ~N~l~~~~p  626 (717)
                      +|++.+..+
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            888886543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2e-15  Score=137.45  Aligned_cols=85  Identities=25%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCCccCc---hhhcCCCCCCE
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV  613 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~p---~~~~~l~~L~~  613 (717)
                      .|+.|++++|++.+.+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+   ..+..+++|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            45555555555554455555556677777777776664321 566667777777777777764444   36667777777


Q ss_pred             EeccCCcCe
Q 005038          614 FSVAYNNLS  622 (717)
Q Consensus       614 L~l~~N~l~  622 (717)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.7e-15  Score=137.96  Aligned_cols=137  Identities=26%  Similarity=0.280  Sum_probs=111.3

Q ss_pred             CCcCCEEeCCCCcCC-cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038          411 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  489 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  489 (717)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            477899999999887 56777778889999999999998865  67888899999999999988765554433       


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc-ccccCCccCCeEeC
Q 005038          490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNL  568 (717)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L  568 (717)
                                                                    ++.|+.|++++|++++..+ ..+..+++|++|++
T Consensus        94 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           94 ----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                          3378999999999886432 67899999999999


Q ss_pred             CCcccCCCCC---cCCCCCCCCCEEECCCCcCCccCch
Q 005038          569 SHNNLTGSIP---STFSNLKHVESLDLSNNKLNGKIPH  603 (717)
Q Consensus       569 s~n~l~~~~p---~~~~~l~~L~~L~L~~N~i~~~~p~  603 (717)
                      ++|++++..+   ..+..+++|++|++++|.+. ..|+
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999996555   47889999999999999987 4454

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=8.2e-15  Score=134.65  Aligned_cols=89  Identities=24%  Similarity=0.280  Sum_probs=66.5

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            46666666666665555567777888888888888886666677788888888888888876555566778888888888


Q ss_pred             CCcCeecCC
Q 005038          618 YNNLSGEIP  626 (717)
Q Consensus       618 ~N~l~~~~p  626 (717)
                      +|++.+.+|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            888887665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.1e-15  Score=133.16  Aligned_cols=81  Identities=23%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEECCCCcCCccCc---hhhcCCCCCCE
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV  613 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~i~~~~p---~~~~~l~~L~~  613 (717)
                      .|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            566666666666655666666777788888888877753 23667778888888888888876555   46777888888


Q ss_pred             EeccC
Q 005038          614 FSVAY  618 (717)
Q Consensus       614 L~l~~  618 (717)
                      ||+++
T Consensus       145 L~l~d  149 (149)
T 2je0_A          145 LDGYD  149 (149)
T ss_dssp             ETTBC
T ss_pred             ccCCC
Confidence            87763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.1e-14  Score=131.85  Aligned_cols=114  Identities=23%  Similarity=0.278  Sum_probs=103.8

Q ss_pred             cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      +.|+.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            46999999999999877778899999999999999999877778999999999999999999877778899999999999


Q ss_pred             cCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          617 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       617 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      ++|.+++..+..+..+..++.+.+.+|++.|+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999997766667788999999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.1e-15  Score=132.41  Aligned_cols=129  Identities=26%  Similarity=0.301  Sum_probs=98.6

Q ss_pred             CCcCCEEeCCCCcCC-cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038          411 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  489 (717)
Q Consensus       411 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  489 (717)
                      .+++++|++++|.+. +.+|..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++.+|..+..       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence            367888888888887 56677777788888888888888765  66778888888888888887655544332       


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCC-CcccccCCccCCeEeC
Q 005038          490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNL  568 (717)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L  568 (717)
                                                                    +++|+.|++++|++++. .+..+..+++|++|++
T Consensus        87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                          23688888888888753 3477888899999999


Q ss_pred             CCcccCCCCC---cCCCCCCCCCEEECCC
Q 005038          569 SHNNLTGSIP---STFSNLKHVESLDLSN  594 (717)
Q Consensus       569 s~n~l~~~~p---~~~~~l~~L~~L~L~~  594 (717)
                      ++|++++..+   ..+..+++|++|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999986655   4688889999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.5e-15  Score=170.75  Aligned_cols=196  Identities=21%  Similarity=0.234  Sum_probs=96.5

Q ss_pred             CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeC
Q 005038          340 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL  419 (717)
Q Consensus       340 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  419 (717)
                      +.++.|++.+|.+... +.     ..++.++++.+.+.+             +++..|.+.  ++...|..++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~-------------~~~~~n~~~--~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDE-------------DDDIENRMV--MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccC-------------cccccccee--cChhhhccCCCCcEEEC
Confidence            4466666666665532 21     234444555544432             222233331  33444777788888888


Q ss_pred             CCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcch
Q 005038          420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQF  499 (717)
Q Consensus       420 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (717)
                      ++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+.               
T Consensus       232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~---------------  293 (727)
T 4b8c_D          232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF---------------  293 (727)
T ss_dssp             TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT---------------
T ss_pred             CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC---------------
Confidence            888877 45555557788888888888887 56677777888888888888776 4455554433               


Q ss_pred             hhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc
Q 005038          500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS  579 (717)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  579 (717)
                                                            +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|.
T Consensus       294 --------------------------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          294 --------------------------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             --------------------------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             --------------------------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence                                                  6777777777776 5566677777777777777777776666


Q ss_pred             CCCCCC-CCCEEECCCCcCCccCchhhcCCCCCCEEeccCC
Q 005038          580 TFSNLK-HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  619 (717)
Q Consensus       580 ~~~~l~-~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N  619 (717)
                      .+..+. .+..|+|++|.+++.+|.      .|+.|++++|
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            654432 122366777777766664      3555666666

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=1.9e-15  Score=169.90  Aligned_cols=166  Identities=22%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      +.++.|+|.+|.+... +..     .++.++|+.+.+.+              +++..|.+. ..+..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            5577777777766642 222     23334444443321              122223322 33444555555555555


Q ss_pred             cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038          372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  451 (717)
Q Consensus       372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  451 (717)
                      ++|.+....+..+.+.+|+.|+|++|.+. .++.. |..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            55555533333444455555555555554 45543 777888999999999888 56888888889999999999887 5


Q ss_pred             cchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038          452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  482 (717)
Q Consensus       452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  482 (717)
                      +|..|..+++|+.|+|++|++++.+|..+..
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            5666888889999999999888777765543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=3.9e-12  Score=132.97  Aligned_cols=298  Identities=12%  Similarity=0.154  Sum_probs=138.5

Q ss_pred             eeCcccccCCC-CCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCC---CcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038            9 VVRSQGLCSLV-HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ---LTGSISSSPLVHLTSIEELMLSNNYFQIPI   84 (717)
Q Consensus         9 ~i~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~   84 (717)
                      +|.+.||.++. .|+.+.+..+ ++.+...+|.+|++|+.+.++.|.   ++ .|+..+|.++.+|+.+.+..+ ++ .+
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~-~I  128 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT-EI  128 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc-ee
Confidence            45666777764 4777777643 555566777777777777776543   44 566666777777776666544 22 24


Q ss_pred             CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh
Q 005038           85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW  164 (717)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  164 (717)
                      +..+|..+.+|+.+.+..+ +...                            ....+..+..|+.+.+..+ +. .+...
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I----------------------------~~~~F~~c~~L~~i~~~~~-~~-~I~~~  177 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSV----------------------------ADGMFSYCYSLHTVTLPDS-VT-AIEER  177 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEE----------------------------CTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred             hhhhhhhhcccccccccce-eeee----------------------------cccceecccccccccccce-ee-Eeccc
Confidence            4455666667776666432 1111                            1123344445555554432 11 22222


Q ss_pred             hhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCcccccc-------------CCCCcEEECCCCCC
Q 005038          165 LLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-------------LPSLYVFNNSMNAL  231 (717)
Q Consensus       165 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~-------------l~~L~~L~l~~n~~  231 (717)
                      .+. ...|+.+.+..+. .......+..+..++.......... .+...++..             ...+..+.+. +.+
T Consensus       178 aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v  253 (394)
T 4gt6_A          178 AFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGV  253 (394)
T ss_dssp             TTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTE
T ss_pred             ccc-ccceeEEEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcC-Ccc
Confidence            222 2345555554332 1122334555555555554443322 111111111             0111222211 111


Q ss_pred             CccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038          232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS  311 (717)
Q Consensus       232 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  311 (717)
                      ......+|..+..|+.+.+..+..  .+....+.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+
T Consensus       254 ~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          254 ARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             EEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             eEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            112233445555555555543322  3344444445555555553 2333334444555555555555433 33333444


Q ss_pred             ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCC
Q 005038          312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN  350 (717)
Q Consensus       312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  350 (717)
                      |.+|.+|+.+.+..+ ++.....+|.++++|+.+++.++
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            555555555555332 33233344555555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.2e-13  Score=125.49  Aligned_cols=88  Identities=24%  Similarity=0.261  Sum_probs=43.7

Q ss_pred             cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      +.++.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            44555555555555444444555555555555555555444444445555555555555554433344445555555555


Q ss_pred             cCCcCeec
Q 005038          617 AYNNLSGE  624 (717)
Q Consensus       617 ~~N~l~~~  624 (717)
                      ++|++.+.
T Consensus       110 ~~N~~~c~  117 (170)
T 3g39_A          110 LNNPWDCA  117 (170)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCCCCC
Confidence            55555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4.6e-14  Score=129.41  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc--CCCCCCCCCEEECCCCcCCccCch----hhcCCCCC
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTL  611 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~i~~~~p~----~~~~l~~L  611 (717)
                      .|+.|++++|++++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|++++|++. ..|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            3445555555555333334466667777777777775 3443  5667777777777777776 3444    36777777


Q ss_pred             CEEeccCCcCee
Q 005038          612 EVFSVAYNNLSG  623 (717)
Q Consensus       612 ~~L~l~~N~l~~  623 (717)
                      ++||+++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            777777776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.5e-14  Score=127.60  Aligned_cols=134  Identities=21%  Similarity=0.199  Sum_probs=108.1

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      +..+++|++|++++|.+.. ++......++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..     
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA-----   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence            6678899999999999885 455333345999999999999865  57888999999999999998665544443     


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcc--cccCCccCCe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQT  565 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~  565 (717)
                                                                      +++|+.|++++|++.. +|.  .+..+++|+.
T Consensus        87 ------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           87 ------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLTY  117 (176)
T ss_dssp             ------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCE
T ss_pred             ------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCCE
Confidence                                                            3479999999999974 454  7889999999


Q ss_pred             EeCCCcccCCCCCcC----CCCCCCCCEEECCCCcCCc
Q 005038          566 LNLSHNNLTGSIPST----FSNLKHVESLDLSNNKLNG  599 (717)
Q Consensus       566 L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~N~i~~  599 (717)
                      |++++|+++ ..|..    +..+++|+.||+++|....
T Consensus       118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999998 45553    8889999999999998763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.45  E-value=4e-12  Score=132.92  Aligned_cols=132  Identities=14%  Similarity=0.223  Sum_probs=78.6

Q ss_pred             CccccCCC-CCCEEEccCCccccccchhhhhCCCCCCEEEccCcc---cCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038          236 PSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS  311 (717)
Q Consensus       236 ~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  311 (717)
                      ..+|.+++ .|+.+.+..+ ++ .+....|.+|.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++.....+
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            44566664 4777777653 55 6666777777778877776653   55555666777777777666554 34344556


Q ss_pred             ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038          312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  373 (717)
Q Consensus       312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  373 (717)
                      |..+.+|+.+.+..+ +.......|..+..|+.+.+.++ ++.+...+|.. ..|+.+.+..
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~  191 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPA  191 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECT
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECC
Confidence            667777777777543 22244455666666777666544 22233334433 4566666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.9e-13  Score=122.45  Aligned_cols=106  Identities=23%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             eEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC
Q 005038          519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  598 (717)
Q Consensus       519 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~  598 (717)
                      .+++..+.+..++.. ..+.|+.|+|++|++.+..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|+++
T Consensus        16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            344444444444432 2355666666666666555666666666666666666666544445566666666666666666


Q ss_pred             ccCchhhcCCCCCCEEeccCCcCeecC
Q 005038          599 GKIPHQLVELKTLEVFSVAYNNLSGEI  625 (717)
Q Consensus       599 ~~~p~~~~~l~~L~~L~l~~N~l~~~~  625 (717)
                      +..+..|..+++|++|++++|++.+..
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             eeCHHHhccccCCCEEEeCCCCccccc
Confidence            444444666666666666666666443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=5.4e-13  Score=121.14  Aligned_cols=110  Identities=25%  Similarity=0.263  Sum_probs=99.2

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      ..+.+++++|+++. +|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            36789999999984 666553  899999999999998889999999999999999999997777788999999999999


Q ss_pred             CCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      +|++++..|..+..+..++.+.+.+||+.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998877778899999999999999999985

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.3e-15  Score=142.86  Aligned_cols=153  Identities=25%  Similarity=0.326  Sum_probs=114.0

Q ss_pred             CCCcCCEEeCCCCcCCcccch------hhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038          410 NCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  483 (717)
Q Consensus       410 ~~~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  483 (717)
                      ....++.++++.+.+.+..|.      .+..+++|++|++++|++++ ++ .+..+++|++|++++|.++. +|..+.. 
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~-   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV-   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH-
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc-
Confidence            334555566666666555554      78888999999999999886 44 78888999999999998863 3332221 


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038          484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  563 (717)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  563 (717)
                                                                          ++.|+.|++++|++++ +| .+..+++|
T Consensus        92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence                                                                3478899999998885 34 68888999


Q ss_pred             CeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCCccCchh----------hcCCCCCCEEeccCCcCe
Q 005038          564 QTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS  622 (717)
Q Consensus       564 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~p~~----------~~~l~~L~~L~l~~N~l~  622 (717)
                      ++|++++|.+++..+ ..+..+++|++|++++|++.+..|..          +..+++|+.||  +|+++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999999885332 46788899999999999987665542          77888898887  66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.9e-12  Score=117.82  Aligned_cols=109  Identities=20%  Similarity=0.228  Sum_probs=97.3

Q ss_pred             cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038          539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  618 (717)
Q Consensus       539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~  618 (717)
                      -+.+++++|++. .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 5666654  8999999999999988899999999999999999999977667788999999999999


Q ss_pred             CcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          619 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       619 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      |.+++..+..+..+..++.+.+.+|++.|.|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997766668889999999999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=8.2e-15  Score=137.29  Aligned_cols=138  Identities=23%  Similarity=0.253  Sum_probs=115.6

Q ss_pred             hhCCCCCcEEEcCCCccccccch------hccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038          432 VDGLSQLSHLILGHNNLEGEVSV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  505 (717)
Q Consensus       432 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (717)
                      +...+.++.++++.+.+.+..+.      .+..+++|++|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            45567788888888888777665      88999999999999999976 33 3333                       


Q ss_pred             ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038          506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  585 (717)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  585 (717)
                                                    ++.|+.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus        69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence                                          347999999999998 567788888999999999999996 45 688899


Q ss_pred             CCCEEECCCCcCCccCc-hhhcCCCCCCEEeccCCcCeecCCC
Q 005038          586 HVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       586 ~L~~L~L~~N~i~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      +|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999985433 5789999999999999999988775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=6.3e-12  Score=129.21  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=86.4

Q ss_pred             ccceeeCCC-CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          538 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       538 ~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      +|+.|+|++ |.+.+..+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|++++..+..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            688999986 999887778899999999999999999988888899999999999999999866666666665 999999


Q ss_pred             cCCcCeecCC-CCCcccCCCCcccccCCcCCCCCC
Q 005038          617 AYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       617 ~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      ++|++.+.++ .|+..+.......+..+.+.|..|
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            9999987654 333344333334445566666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.1e-11  Score=127.37  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=97.2

Q ss_pred             ceeeCCCC-ccCCCCcccccCCccCCeEeCCC-cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          540 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       540 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      ..++.+++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788888 888 4677 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             CCcCeecCCCCCcccCCCCcccccCCcCCCCCCC
Q 005038          618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  651 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l  651 (717)
                      +|+|++..|..+..+. ++.+.+.+|++.|+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977666665554 89999999999999864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=2e-09  Score=111.95  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=25.6

Q ss_pred             cccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038          556 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  616 (717)
Q Consensus       556 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l  616 (717)
                      +|.++++|+.+.+.++.++.+.+.+|.++++|+.++|..+ ++.+...+|.++++|+.+.+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            3444444444444444444333344444444444444332 33233334444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=8.1e-13  Score=135.98  Aligned_cols=136  Identities=20%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccc-----cCCCCCCEEEccCCccccccchhh---hh
Q 005038          194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGEIPEHL---AV  265 (717)
Q Consensus       194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~---~~  265 (717)
                      ++|++|++++|.+++.....+...+++|+.|++++|.++......+     ...++|++|++++|.+++.....+   ..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4566666666666533333333334455555555555543222222     234556666666666652211111   12


Q ss_pred             CCCCCCEEEccCcccCccC----cccccCCCCCCeEECcCCcCcccC----cccccCCCCCCEEEccCCcCc
Q 005038          266 GCVNLQFLALSNNNLQGHL----FSRNFNLTNLQWLQLEGNRFVGEI----PQSLSKCSSLEGLYLNNNSLL  329 (717)
Q Consensus       266 ~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~  329 (717)
                      .+++|++|+|++|.+.+..    ...+...++|++|+|++|.++...    ...+...++|++|++++|.++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3455666666665554321    233334455555555555554321    122333445555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.17  E-value=5.8e-09  Score=108.38  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=87.9

Q ss_pred             ccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccc
Q 005038          407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH  486 (717)
Q Consensus       407 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  486 (717)
                      ++..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +......+|...   
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c---  285 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC---  285 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC---
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc---
Confidence            3555666666666543 33344455666667777766554 44455556666677777766433 333333333332   


Q ss_pred             ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeE
Q 005038          487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL  566 (717)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  566 (717)
                                                                        ++|+.+++.++.++.+...+|.++.+|+.+
T Consensus       286 --------------------------------------------------~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          286 --------------------------------------------------SNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             --------------------------------------------------TTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             --------------------------------------------------cccccccccccccceehhhhhcCCCCCCEE
Confidence                                                              256677776666665556677788888888


Q ss_pred             eCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038          567 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  609 (717)
Q Consensus       567 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~  609 (717)
                      +|..+ ++.+-..+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            88654 55555667888888888877654 5545555665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=2.1e-12  Score=132.83  Aligned_cols=135  Identities=19%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcCCcCccc----Cccccc
Q 005038          243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRFVGE----IPQSLS  313 (717)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~  313 (717)
                      ++|++|+|++|.+++.....+...+++|++|+|++|.++......+     ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4555555655555433333333334456666666665553322222     2345666666666665532    223345


Q ss_pred             CCCCCCEEEccCCcCcCcC----CcccCCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcCc
Q 005038          314 KCSSLEGLYLNNNSLLGKI----PRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNIS  377 (717)
Q Consensus       314 ~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~  377 (717)
                      .+++|++|++++|.+.+..    +..+...++|+.|++++|.+++.    +...+...+.|++|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            5666777777766665322    33445556677777777666532    2233344566777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=2.1e-08  Score=101.96  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=41.7

Q ss_pred             hcCCCCCCEEEccCCCCc---------ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCC
Q 005038          141 LYHQHDLEYVDLSHIKMN---------GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIP  211 (717)
Q Consensus       141 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  211 (717)
                      ...+++|+.|.+......         +.+. .++..+++|+.|.+.+|.-.. .+ .+ .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHH
Confidence            344567777776543221         1122 333566777777776652111 11 12 25677777776666543222


Q ss_pred             cccc-ccCCCCcEEECC
Q 005038          212 VKIG-DVLPSLYVFNNS  227 (717)
Q Consensus       212 ~~~~-~~l~~L~~L~l~  227 (717)
                      ..+. ..+|+|+.|+++
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            2222 135666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=1.2e-08  Score=103.75  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             cccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccC--CCCCCCEEEcc
Q 005038          311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC--QLDSLQILDIS  372 (717)
Q Consensus       311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~  372 (717)
                      .+..+++|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+.  .+++|++|+|+
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3444555666666554211 1121 2 245666666655554422222222  45666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1.1e-07  Score=87.15  Aligned_cols=119  Identities=9%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             ccCCCCCCeeeCCCC-CCCCC----cchhccCCCCCCEEeCCCCCCccc----CCccccCCCCCCCEEECCCCcccCc--
Q 005038           15 LCSLVHLQELYIASN-DLRGS----LPWCMANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIP--   83 (717)
Q Consensus        15 ~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~--   83 (717)
                      +...+.|++|+|++| .+...    +...+...++|++|+|++|.+.+.    +.. .+...++|++|+|++|.+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHH
Confidence            445556666666665 55432    233444555666666666655421    111 233345555666655555421  


Q ss_pred             -CCcccccCCCCCCEEEc--cCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 005038           84 -ISLEPLFNYSRLKIFNA--ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN  158 (717)
Q Consensus        84 -~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  158 (717)
                       .....+...+.|++|++  ++|.+.......                        +...+...+.|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~------------------------l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEME------------------------IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH------------------------HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHH------------------------HHHHHHhCCCcCEEeccCCCCC
Confidence             01123344445555555  445544322211                        2345556677888888887764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=7.9e-08  Score=88.05  Aligned_cols=45  Identities=9%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             chhhhCCCCCcEEEcCCC-ccccc----cchhccCCCCCCEEEccCCcCc
Q 005038          429 PDWVDGLSQLSHLILGHN-NLEGE----VSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       429 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                      ...+...+.|++|+|++| .+...    ....+...++|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            344556677777777777 66533    2333455566777777766654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=8.5e-07  Score=85.21  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             cceeeCcccccCCCCCCe--eeCCCCCCC---CCcchhccCCCCCCEEeCCCCCCcc--cCCccccCCCCCCCEEECCCC
Q 005038            6 VNGVVRSQGLCSLVHLQE--LYIASNDLR---GSLPWCMANMTSLRILDVSSNQLTG--SISSSPLVHLTSIEELMLSNN   78 (717)
Q Consensus         6 ~~g~i~~~~~~~l~~L~~--L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~--~i~~~~~~~l~~L~~L~L~~n   78 (717)
                      -++.++-+.|...+.|+.  ++++.|...   ..++....++++|++|+|++|++++  .++. .+..+++|++|+|++|
T Consensus       128 ~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGN  206 (267)
T ss_dssp             TTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTS
T ss_pred             hccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCC
Confidence            344555555666777776  777777533   1122222467888888888888874  2333 4567888888888888


Q ss_pred             cccCcCCcccccCCCCCCEEEccCCccccccccc----ccccCCCccccEEEc
Q 005038           79 YFQIPISLEPLFNYSRLKIFNAENNEIKAEITES----HSLIAPKFQLNTLSL  127 (717)
Q Consensus        79 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~~~~L~~L~l  127 (717)
                      .+.+......+..+ +|++|++++|.+....+..    ...+...++|+.|+=
T Consensus       207 ~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          207 ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            88754233344444 8888888888887533211    012334457777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=1.2e-06  Score=84.22  Aligned_cols=61  Identities=30%  Similarity=0.393  Sum_probs=26.4

Q ss_pred             cccceeeCCCCccCCC--CcccccCCccCCeEeCCCcccCCCCCcCCCCCC--CCCEEECCCCcCCc
Q 005038          537 SLLSGLDLSCNKLIGH--IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNG  599 (717)
Q Consensus       537 ~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~i~~  599 (717)
                      +.|+.|+|++|++++.  +|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|++.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            3455555555555432  223334444555555555554432  1122222  44455555554443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=1e-06  Score=78.13  Aligned_cols=84  Identities=11%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCC----CCCCEEECCCCc-CCccCchhhcCCCCC
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL----KHVESLDLSNNK-LNGKIPHQLVELKTL  611 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-i~~~~p~~~~~l~~L  611 (717)
                      .|+.||+++|.++...-..+.++++|++|+|++|. +++.--..++.+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            59999999999887666678899999999999995 765333345554    479999999986 776555677889999


Q ss_pred             CEEeccCCcC
Q 005038          612 EVFSVAYNNL  621 (717)
Q Consensus       612 ~~L~l~~N~l  621 (717)
                      +.|++++|+-
T Consensus       142 ~~L~L~~c~~  151 (176)
T 3e4g_A          142 KYLFLSDLPG  151 (176)
T ss_dssp             CEEEEESCTT
T ss_pred             CEEECCCCCC
Confidence            9999999963

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=8.5e-06  Score=72.26  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             CCCEEEccCcccCccCcccccCCCCCCeEECcCCc-CcccCcccccCC----CCCCEEEccCCc-CcCcCCcccCCCCCC
Q 005038          269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR-FVGEIPQSLSKC----SSLEGLYLNNNS-LLGKIPRWLGNLTRL  342 (717)
Q Consensus       269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~~L  342 (717)
                      .|++||++++.|+......+.++++|++|+|++|. +++..-..+..+    ++|++|++++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554444444455555555555553 332222223332    235555555542 333222233334444


Q ss_pred             CEEEccCC
Q 005038          343 QYIIMPNN  350 (717)
Q Consensus       343 ~~L~l~~n  350 (717)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.65  E-value=3.6e-05  Score=65.22  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=54.8

Q ss_pred             eEeCCCcccC-CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC-CCCcccCCCCcccccC
Q 005038          565 TLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWKAQFATFNESSYEG  642 (717)
Q Consensus       565 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~  642 (717)
                      .++-++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+... .|+..|..-...... 
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~-   88 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP-   88 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG-
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc-
Confidence            5666666665 23443322  357788888888876666677778888888888888876432 111111100000000 


Q ss_pred             CcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038          643 NTFLCGLPLPICRSPATMPEASIGNEQ  669 (717)
Q Consensus       643 n~~~c~~~l~~C~~~~~~~~~~~~~~~  669 (717)
                            .....|..|...+++.+....
T Consensus        89 ------~~~~~C~~P~~l~g~~l~~l~  109 (130)
T 3rfe_A           89 ------YRDLRCVAPPALRGRLLPYLA  109 (130)
T ss_dssp             ------GTTCBCCBSTTTTTCBGGGCC
T ss_pred             ------ccCcEeCcChHHcCCCcccCC
Confidence                  011248888888887665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.16  E-value=0.00012  Score=66.13  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=66.9

Q ss_pred             hhccCCCCCCEEeCCCC-CCccc----CCccccCCCCCCCEEECCCCcccCc---CCcccccCCCCCCEEEccCCccccc
Q 005038           37 WCMANMTSLRILDVSSN-QLTGS----ISSSPLVHLTSIEELMLSNNYFQIP---ISLEPLFNYSRLKIFNAENNEIKAE  108 (717)
Q Consensus        37 ~~~~~l~~L~~L~Ls~n-~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~  108 (717)
                      ..+.+-+.|++|+|++| .|...    +.. ++..-+.|++|+|++|.+...   .-...+...+.|++|+|++|.|...
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            33445566777777764 55421    222 345556677777777766521   1112334556777777777777655


Q ss_pred             cccccc-ccCCCccccEEEccCCCC-CCC-----CCchhhcCCCCCCEEEccCCCC
Q 005038          109 ITESHS-LIAPKFQLNTLSLSSNYG-DGF-----IFPKFLYHQHDLEYVDLSHIKM  157 (717)
Q Consensus       109 ~~~~~~-~~~~~~~L~~L~l~~~~~-~~~-----~~~~~l~~~~~L~~L~l~~~~~  157 (717)
                      ....+. .+...+.|++|+|+.+.. ..|     .+...+..-+.|+.|+++.+..
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            443322 233344677777743222 222     1345566677888898886654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.0017  Score=54.77  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             CeeeCCCCCCC-CCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038           22 QELYIASNDLR-GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ   81 (717)
Q Consensus        22 ~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~   81 (717)
                      ++++-+++.++ ..+|..+.  ++|++|+|++|+|+ .++...|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            47888888886 34554443  57899999999998 888878888999999999988776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.86  E-value=0.00033  Score=63.37  Aligned_cols=11  Identities=18%  Similarity=0.211  Sum_probs=5.5

Q ss_pred             CCCCCEEEccC
Q 005038          242 MKFLQILDLSN  252 (717)
Q Consensus       242 l~~L~~L~Ls~  252 (717)
                      -+.|+.|+|++
T Consensus        40 n~~L~~L~L~~   50 (197)
T 1pgv_A           40 DTDLKEVNINN   50 (197)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCccEEECCC
Confidence            34455555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	717
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 3e-19
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 56/377 (14%)

Query: 18  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
           L  +  L      ++ S+   +  + +L  ++ S+NQLT      PL +LT + +++++N
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 78  NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
           N       L  L N                 +    +L   +   NT+S  S        
Sbjct: 98  NQIADITPLANLTNL-TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 138 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 197
            +  +     +   L+++           + +       L N                  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL----------------E 200

Query: 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 257
            L  +NN I    P+ I   L  L +  N +         +  ++  L  LDL+NN ++ 
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 255

Query: 258 EIPEHLAVGCVNLQFLALSNNNLQG--------------------HLFSRNFNLTNLQWL 297
             P     G   L  L L  N +                         S   NL NL +L
Sbjct: 256 LAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
            L  N      P  +S  + L+ L+  NN +       L NLT + ++   +N +    P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 358 VEFCQLDSLQILDISDN 374
                L  +  L ++D 
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 3e-19
 Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 41/392 (10%)

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 300
            +       L   ++T  + +        +  L      ++         L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 301 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 360
            N+     P  L   + L  + +NNN +    P           +         P+    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 361 CQLDSLQIL-------------DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 407
                                  +   +    +       ++  +       +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467
               ++L +L  + N+++   P  +   + L  L L  N L+   +  L  L  L  LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 527
           +NN +    P            S  +   E       I               E     +
Sbjct: 249 ANNQISNLAP-----------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 528 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 587
             I     L  L+ L L  N +    P  + +LT++Q L  ++N ++    S+ +NL ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 588 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619
             L   +N+++   P  L  L  +    +   
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 9e-18
 Identities = 63/397 (15%), Positives = 124/397 (31%), Gaps = 40/397 (10%)

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
             +   N+   +     D + +L      + ++DG        +  L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 318
            P         L  + ++NN +       N        L       +  +    +     
Sbjct: 82  TPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL- 137

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
               L++N++            +          L+    +   +   +    +SD ++  
Sbjct: 138 ---ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 379 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 438
            L +         +  + N +            ++L  L L+ N+L       +  L+ L
Sbjct: 195 KLTNLES------LIATNNQISDITP---LGILTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 439 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ 498
           + L L +N +       L  L +L  L L  N +    P               ++    
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-----------GLTALTNL 290

Query: 499 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 558
                 +E        +N         NI+ I     L+ L  L  + NK+       + 
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 559 NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
           NLT I  L+  HN ++   P   +NL  +  L L++ 
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 48/315 (15%), Positives = 102/315 (32%), Gaps = 36/315 (11%)

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
            L      ++   ++   +      LD +  L      I  S+    +  ++ Q++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS------HLILGHNNLEGE 451
            L          N + LV + ++ N++    P                   +        
Sbjct: 77  QLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF 511
           ++      N +  +   +           +  T  +  +N ++ +        +      
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 512 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 571
            +  N E    T   I+ I    +L+ L  L L+ N+L       + +LT +  L+L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 572 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIP--------------------HQLVELKTL 611
            ++   P   S L  +  L L  N+++   P                      +  LK L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 612 EVFSVAYNNLSGEIP 626
              ++ +NN+S   P
Sbjct: 310 TYLTLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 45/325 (13%), Positives = 98/325 (30%), Gaps = 30/325 (9%)

Query: 321 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380
             L   ++   +     +L ++  +      ++    VE+    +L  ++ S+N ++   
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDIT 82

Query: 381 P--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 438
           P  +    + I   +     +            +         + L          LS  
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 439 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ 498
           +   +   +    +           L  L+N      +    +  +     +  ++ +  
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 499 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 558
                 I          N +        +  I     L+ L+ LDL+ N++    P  + 
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 559 NLTRIQTLNLSHNNLTGSIP--------------------STFSNLKHVESLDLSNNKLN 598
            LT++  L L  N ++   P                    S  SNLK++  L L  N ++
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSG 623
              P  +  L  L+    A N +S 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 7   NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
           N +     + SL  LQ L+ A+N +       +AN+T++  L    NQ++      PL +
Sbjct: 317 NNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT---PLAN 371

Query: 67  LTSIEELMLSNN 78
           LT I +L L++ 
Sbjct: 372 LTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.2 bits (212), Expect = 6e-19
 Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 13/270 (4%)

Query: 216 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275
           D+ P   + +   N +       F N+K L  L L NN ++   P   A   V L+ L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
           S N L+         L  L+  + E  +    +   L++   +E L  N     G     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
              + +L YI + + ++     +      SL  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG----- 450
                  +  G+  N   L  L L+ N+L   +P  +     +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 451 -EVSVQLCELNQLQLLDLSNNNL-HGPIPP 478
                   +      + L +N + +  I P
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.1 bits (209), Expect = 1e-18
 Identities = 47/299 (15%), Positives = 89/299 (29%), Gaps = 20/299 (6%)

Query: 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
           +  + ++P+ L        L L NN +         NL  L  +I+ NN +    P  F 
Sbjct: 19  DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 362 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 421
            L  L+ L +S N +   LP        +       +   +       N   +V L  + 
Sbjct: 77  PLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 422 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 481
            + +G       G+ +LS++ +   N+    ++       L  L L  N +         
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLK 192

Query: 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541
                     S      F    +++           E+     K +           +  
Sbjct: 193 GLNNLAKLGLS------FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

Query: 542 LDLSCNKLIG------HIPPQIGNLTRIQTLNLSHNNLTGS--IPSTFSNLKHVESLDL 592
           + L  N +          P           ++L  N +      PSTF  +    ++ L
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 4e-17
 Identities = 49/287 (17%), Positives = 91/287 (31%), Gaps = 35/287 (12%)

Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 246
           ++P         LD+ NN I         + L +L+      N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 247 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN------------------ 288
            L LS N L  E+PE +      L+        ++  +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 289 -----FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
                  +  L ++++        IPQ L    SL  L+L+ N +       L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-- 401
            + +  N +             L+ L +++N +            I+ V+L  N +    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 402 ---QLKRGTFFNCSSLVTLDLSYNRLNGS--IPDWVDGLSQLSHLIL 443
                  G     +S   + L  N +      P     +   + + L
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 8/243 (3%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L L  N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
               P + +    LE LYL+ N L     +    L  L+        +   +     Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
            +++      +      +      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
                  + GL+ L+ L L  N++    +  L     L+ L L+NN L        D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 485 LHE 487
           +  
Sbjct: 244 IQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 9e-13
 Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 9/217 (4%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
                LDL  N++          L  L  LIL +N +          L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 472 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531
           L   +P     T        +     +  +F  +      +E   + +     +N A+  
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQG 148

Query: 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 591
               +  LS + ++   +   IP   G    +  L+L  N +T    ++   L ++  L 
Sbjct: 149 ----MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 592 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628
           LS N ++      L     L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 7e-12
 Identities = 58/287 (20%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
              +LD+ +N I+                         +K G F N  +L TL L  N++
Sbjct: 32  DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
           +   P     L +L  L L  N L+    +       LQ L +  N +       F+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                   ++P +   I          L          TT          +   L+ L L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
             NK+       +  L  +  L LS N+++     + +N  H+  L L+NNKL  K+P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 605 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651
           L + K ++V  +  NN+S              + +      L   P+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 51/280 (18%), Positives = 91/280 (32%), Gaps = 21/280 (7%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
               +LD+ +N++T  I      +L ++  L+L NN     IS        +L+      
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 88

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
           N++K    +          L  L +  N         F      +     ++   +    
Sbjct: 89  NQLKELPEKMP------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
           N   +   KL  + + + ++     +P      L +L +  N I       +   L +L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLA 198

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 282
               S N++      S  N   L+ L L+NN L              +Q + L NNN+  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISA 256

Query: 283 ------HLFSRNFNLTNLQWLQLEGNRF-VGEIPQSLSKC 315
                      N    +   + L  N     EI  S  +C
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 19/248 (7%)

Query: 15  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
             +L +L  L + +N +    P   A +  L  L +S NQL       P     +++EL 
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELR 106

Query: 75  LSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 132
           +  N            L     +++          E      +     +L+ + ++    
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK----KLSYIRIADTNI 162

Query: 133 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 192
                         L  + L   K+        L+    L  L L  +S++      + +
Sbjct: 163 TTIPQGLP----PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 193 HKRLRQLDVSNNNIRGHIPVKIG-DVLPSLYVFNNSMNALDGS---IPSSFGNMKFLQIL 248
              LR+L ++NN +            +  +Y+ NN+++A+  +    P           +
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 249 DLSNNHLT 256
            L +N + 
Sbjct: 278 SLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 540 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
               + C+ L +  +P  +        L+L +N +T      F NLK++ +L L NNK++
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 599 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESS 639
              P     L  LE   ++ N L     +            
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 7e-18
 Identities = 56/265 (21%), Positives = 94/265 (35%), Gaps = 12/265 (4%)

Query: 337 GNLTRLQYIIMPNNHLEG--PIPVEFCQLDSLQILDISD--NNISGSLPSCFHPLSIKQV 392
               R+  + +   +L    PIP     L  L  L I    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
           +++   + G           +LVTLD SYN L+G++P  +  L  L  +    N + G +
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 512
                  ++L      + N      P             S +  E               
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 513 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 572
                    F       + +  +   L+GLDL  N++ G +P  +  L  + +LN+S NN
Sbjct: 226 IHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 573 LTGSIPSTFSNLKHVESLDLSNNKL 597
           L G IP    NL+  +    +NNK 
Sbjct: 280 LCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 8e-17
 Identities = 54/292 (18%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 366 LQILDISDNNISG--SLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 423 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482
            ++G+IPD++  +  L  L   +N L G +   +  L  L  +    N + G IP  + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 542
               + +++ +    +             L   +                 K     +  
Sbjct: 172 F--SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN----TQK 225

Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602
                  +     ++G    +  L+L +N + G++P   + LK + SL++S N L     
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL----- 280

Query: 603 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
                               GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 281 -------------------CGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 54/266 (20%), Positives = 95/266 (35%), Gaps = 7/266 (2%)

Query: 121 QLNTLSLSSNYGDGFI-FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179
           ++N L LS          P  L +   L ++ +  I          +   T+L  L++ +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 180 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 239
            +++G     +   K L  LD S N + G +P  I  + P+L       N + G+IP S+
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY 169

Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
           G+   L      + +                      + N+     S  F          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKIH 227

Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 359
                +      +    +L GL L NN + G +P+ L  L  L  + +  N+L G IP +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 360 FCQLDSLQILDISDNNI--SGSLPSC 383
              L    +   ++N       LP+C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 59/266 (22%), Positives = 91/266 (34%), Gaps = 53/266 (19%)

Query: 266 GCVNLQFLALSNNNLQG--HLFSRNFNLTNLQWLQLEGN-RFVGEIPQSLSKCSSLEGLY 322
               +  L LS  NL     + S   NL  L +L + G    VG IP +++K + L  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
           + + ++ G IP +L  +  L  +    N L G +P     L +L  +    N ISG++P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 383 -----------------------------------------------CFHPLSIKQVHLS 395
                                                                     + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 455
                     G      +L  LDL  NR+ G++P  +  L  L  L +  NNL GE+  Q
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 456 LCELNQLQLLDLSNNNLH--GPIPPC 479
              L +  +   +NN      P+P C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 37/266 (13%), Positives = 75/266 (28%), Gaps = 12/266 (4%)

Query: 17  SLVHLQELYIASNDLRG--SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
               +  L ++  +L     +P  +AN+  L  L +             +  LT +  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 75  LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 134
           +++      I        + + +  + N             I+    L  ++   N   G
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNRISG 163

Query: 135 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 194
            I   +                        +      L   F+            +    
Sbjct: 164 AIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254
                 +          +    +  +L   +   N + G++P     +KFL  L++S N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 255 LTGEIPEHLAVGCVNLQFLALSNNNL 280
           L GEIP+            A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 4e-17
 Identities = 50/276 (18%), Positives = 85/276 (30%), Gaps = 8/276 (2%)

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
                  ++  +PV I      +++  N    +     +SF   + L IL L +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 318
                    +  Q     N  L+    +    L  L  L L+        P      ++L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
           + LYL +N+L         +L  L ++ +  N +       F  L SL  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 379 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 438
             P  F  L               L         +L  L L+ N             + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWL 250

Query: 439 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 474
                  + +   +      L    L  L+ N+L G
Sbjct: 251 QKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 7e-14
 Identities = 54/294 (18%), Positives = 90/294 (30%), Gaps = 36/294 (12%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
            +P  +   ++ + ++L+ N +             L  + + +N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 367 QILDISDNNISGSL-PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           + LD+SDN    S+ P+ FH L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 485
               D    L  L+HL L  N +          L+ L  L L  N +    P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
               +     +    +          L+                            L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQY---------------------------LRLN 233

Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599
            N  +            +Q    S + +  S+P   +         L+ N L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 54/232 (23%), Positives = 82/232 (35%), Gaps = 7/232 (3%)

Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 307
                  L   +P  +       Q + L  N +     +      NL  L L  N     
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKI-PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
              + +  + LE L L++N+ L  + P     L RL  + +    L+   P  F  L +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 367 QILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
           Q L + DN +       F    ++  + L  N +   +    F    SL  L L  NR+ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA 190

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 477
              P     L +L  L L  NNL    +  L  L  LQ L L++N       
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 58/316 (18%), Positives = 99/316 (31%), Gaps = 58/316 (18%)

Query: 315 CSSLEGLYLN-NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
           C +   +  +     L  +P  +   +  Q I +  N +       F    +L IL +  
Sbjct: 8   CYNEPKVTTSCPQQGLQAVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 374 NNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
           N ++    + F  L++ +   LS N     +   TF     L TL L    L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 433 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 492
            GL+ L +L L  N L+        +L  L  L L  N +       F            
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------- 175

Query: 493 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 552
                                                      L  L  L L  N++   
Sbjct: 176 -------------------------------------------LHSLDRLLLHQNRVAHV 192

Query: 553 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
            P    +L R+ TL L  NNL+       + L+ ++ L L++N        + +    L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQ 251

Query: 613 VFSVAYNNLSGEIPEW 628
            F  + + +   +P+ 
Sbjct: 252 KFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 42/242 (17%), Positives = 71/242 (29%), Gaps = 7/242 (2%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
                VT       L  ++P  +   +    + L  N +    +        L +L L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N L       F    L E         +  ++          L + +    +        
Sbjct: 66  NVLARIDAAAFTGLALLEQLDL----SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 589
               + L+ L  L L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 590 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 649
           L L  N++    PH   +L  L    +  NNLS    E  A            N ++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 650 PL 651
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 35/262 (13%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ------------------------L 55
             Q +++  N +            +L IL + SN                          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 56  TGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL 115
             S+  +    L  +  L L     Q  +        + L+    ++N ++A   ++   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT--- 148

Query: 116 IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
                 L  L L  N         F    H L+ + L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
              N+  A P    +   + L+ L +++N            +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 236 PSSFGNMKFLQILDLSNNHLTG 257
           P          +  L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 2e-11
 Identities = 59/447 (13%), Positives = 117/447 (26%), Gaps = 33/447 (7%)

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLS 251
           ++ LD+    +      ++  +L    V       L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 252 NNHLTGEIPEHLAVG----CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 307
           +N L       +  G       +Q L+L N  L G       +         E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367
           +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 368 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
                        P     L ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 428 IPDWVDGLSQLSHLILGHNN-------LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 480
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG------- 533
             T L       S   +      +   H   +  QN  + E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 534 --KVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS----- 582
             +  S+L  L L+   +       +   +     ++ L+LS+N L  +           
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 583 NLKHVESLDLSNNKLNGKIPHQLVELK 609
               +E L L +   + ++  +L  L+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 1e-08
 Identities = 50/447 (11%), Positives = 109/447 (24%), Gaps = 41/447 (9%)

Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLA 274
           + SL +    ++  D         ++  Q++ L +  LT    + ++        L  L 
Sbjct: 4   IQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 275 LSNNNLQGHLFSR-----NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 329
           L +N L                  +Q L L+     G     LS            +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL-- 119

Query: 330 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389
                      +L    + +               S    +   + +          +S 
Sbjct: 120 -SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
             ++ +   +  Q  + +     +L          N      +         +   +N  
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 450 GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ 509
           G+V +       L                             +    ++  +  +  G +
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 510 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK-------------------LI 550
           G        +         ++      +       S                      + 
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 551 GHIPPQIGNLTRIQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
                     + ++ L L+  +++     S+ +T      +  LDLSNN L      QLV
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 607 E-----LKTLEVFSVAYNNLSGEIPEW 628
           E        LE   +     S E+ + 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 3e-08
 Identities = 58/448 (12%), Positives = 116/448 (25%), Gaps = 21/448 (4%)

Query: 44  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ---IPISLEPLFNYSRLKIFNA 100
            ++ LD+   +L+ +  +  L  L   + + L +              L     L   N 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 101 ENNEIKAEITES--HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 158
            +NE+           L  P  ++  LSL +    G            L  +   H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVL 218
                              + D      +L +              ++    P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 219 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 278
            +  +    +  L   +  S   ++ L++               +     +L+ LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 279 NLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN 338
            L     +           +L           +   C  L  +     SL          
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
                 ++       G                   +  S    + F        +  ++ 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHNNLEGEVSV 454
              +L +G     S L  L L+   ++     S+   +     L  L L +N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 455 QLCE-----LNQLQLLDLSNNNLHGPIP 477
           QL E        L+ L L +      + 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 51/454 (11%), Positives = 109/454 (24%), Gaps = 28/454 (6%)

Query: 1   MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRG----SLPWCMANMTSLRILDVSSNQLT 56
           +   E++    ++ L  L   Q + +    L       +   +    +L  L++ SN+L 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 57  G----SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITES 112
                 +          I++L L N                 L      +          
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 128

Query: 113 HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKL 172
             L+          L     +                      K      N + E   ++
Sbjct: 129 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 188

Query: 173 ETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD 232
                         +      + L+       +        I     SL       N L 
Sbjct: 189 LC---------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT 292
               +            L    +          G +     A  +        +   +  
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
                +             +  CS       + +S+L +    L    ++    + +  +
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL--QISNNRLEDAGV 357

Query: 353 EGPIPVEFCQLDSLQILDISDNNISG----SLPSCFHPL-SIKQVHLSKNMLHGQ----L 403
                        L++L ++D ++S     SL +      S++++ LS N L       L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 437
                     L  L L     +  + D +  L +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 236 PSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSR----- 287
                    L++L L++  ++      LA   +   +L+ L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 288 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
                 L+ L L    +  E+         L+ L  +  SL
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 268 VNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLY 322
           +++Q L +    L    ++     L   Q ++L+          +I  +L    +L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 323 LNNNSLLGKIPRWLGNL 339
           L +N L       +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 14/236 (5%)

Query: 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305
           Q LDL+  +L  ++   L      +       + +   L   +F+   +Q + L  +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 306 GE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP--NNHLEGPIPVEFCQ 362
              +   LS+CS L+ L L    L   I   L   + L  + +   +   E  +      
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 363 LDSLQILDISDNNISGSLPSCFHPLSIKQVH-------LSKNMLHGQLKRGTFFNCSSLV 415
              L  L++S                + +           KN+    L        + + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLSNN 470
                   L          L+ L HL L    ++  E  ++L E+  L+ L +   
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 45/290 (15%), Positives = 89/290 (30%), Gaps = 22/290 (7%)

Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
           LD++  N+   +  ++  +   +  F    + +D  +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 318
               +   C  LQ L+L    L   + +     +NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 378
               LN +       + +          +   +L G          S             
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------- 168

Query: 379 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY-NRLNGSIPDWVDGLSQ 437
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 169 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 438 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487
           L  L +     +G + +       L  L ++ ++      P   N    E
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 9e-10
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 9/271 (3%)

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
             +L   +         +       + +   L   F P  ++ + LS +++      G  
Sbjct: 9   GKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468
             CS L  L L   RL+  I + +   S L  L L   +   E ++Q    +  +L +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 469 NN----NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524
            +         +     + +   +  N S   +  +        +      + ++ +   
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 525 KNIAYIYQGKVLSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 583
                  +   L+ L  L LS C  +I     ++G +  ++TL +      G++      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 584 LKHVESLDLSNNKLNGKIPHQLVELKTLEVF 614
           L H   L ++ +         +   K  E++
Sbjct: 248 LPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 12/256 (4%)

Query: 150 VDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH 209
           +DL+   ++ +    LL                         S  R++ +D+SN+ I   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLAVGCV 268
               I      L   +     L   I ++      L  L+LS     +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQ-------LEGNRFVGEIPQSLSKCSSLEGL 321
            L  L LS          +       + +         +  +            + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 322 YLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSL 380
             ++  L     +    L  LQ++ +     +     +E  ++ +L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 381 PSCFHPLSIKQVHLSK 396
                 L   Q++ S 
Sbjct: 242 QLLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 10/231 (4%)

Query: 121 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 180
            +       ++ D  +   F   +  ++++DLS+  +     + +L   +KL+ L L   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 181 SLAGPFRLPIHSHKRLRQLDV-SNNNIRGHIPVKIGDVLPSLYVFNN------SMNALDG 233
            L+ P    +  +  L +L++   +         +      L   N       +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
           ++      +  L +     N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 294 LQWLQLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343
           LQ L L     +  E    L +  +L+ L +      G +      L  LQ
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 31/249 (12%), Positives = 73/249 (29%), Gaps = 9/249 (3%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 79
            +       + +   L    +    ++ +D+S++ +  S     L   + ++ L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 80  FQIPISLEPLFNYSRLKIFNAENNE-IKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFP 138
              PI +  L   S L   N            ++      +     LS   ++ +  +  
Sbjct: 83  LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 139 KFLYHQHDLEYVDLSHIKMN---GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 195
              +    +  ++LS  + N    +    +      +      +  L             
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255
           L+ L +S         +     +P+L          DG++      +  LQI   + +H 
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHF 258

Query: 256 TGEIPEHLA 264
           T      + 
Sbjct: 259 TTIARPTIG 267

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 20/205 (9%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             +S + ++     L  ++P  +      + L L  N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 470 NNLHGPIPPCF------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT 523
             L               + + ++  S          +                 +    
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 524 TKNIAYIYQGKVLSLLSGLD----------LSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573
                Y+   ++ +L  GL           L+ N L       +  L  + TL L  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 574 TGSIPSTFSNLKHVESLDLSNNKLN 598
             +IP  F     +    L  N   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 42/211 (19%), Positives = 63/211 (29%), Gaps = 8/211 (3%)

Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
               +     ++    +LT  +P  L     +   L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 357
            L+                 + G    +++ L  +P     L  L  + +  N L     
Sbjct: 61  NLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 358 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417
                L  LQ L +  N +    P    P    +     N    +L  G      +L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
            L  N L  +IP    G   L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 44/179 (24%), Positives = 63/179 (35%), Gaps = 5/179 (2%)

Query: 307 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
            +P  L K      L+L+ N L       L   TRL  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 485
             P  +    +L  L L +NNL    +  L  L  L  L L  N+L+      F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 29/231 (12%)

Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
           +K+ +   VN        LP    K    L +S N +                       
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY---------------------- 44

Query: 230 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 289
                  ++      L  L+L    LT    +      + +      ++N    L     
Sbjct: 45  ---TFSLATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
            L  L  L +  NR       +L     L+ LYL  N L    P  L    +L+ + + N
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 400
           N+L          L++L  L + +N++       F    +    L  N   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 33/217 (15%), Positives = 53/217 (24%), Gaps = 17/217 (7%)

Query: 66  HLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
            + S  E+         +P  L          I +   N +      +   + P  +L  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLAT---LMPYTRLTQ 59

Query: 125 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 184
           L+L             L     L+        +              +    L +     
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----- 114

Query: 185 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 244
              L         Q      N    +P  +    P L   + + N L          ++ 
Sbjct: 115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
           L  L L  N L   IP+    G   L F  L  N   
Sbjct: 174 LDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 556 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615
           ++  +     +N    NLT ++P      K    L LS N L       L+    L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 616 VAYNN 620
           +    
Sbjct: 62  LDRAE 66

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 9e-09
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             +  +  +L    +  ++    + L+ +  +I  +++++    +Q   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT----- 524
           N L    P              +   D                     +I          
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 525 -----KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 579
                 N                    +  I  I P +  LT++Q L LS N+++     
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR 194

Query: 580 TFSNLKHVESLDLSN 594
             + LK+++ L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 17/203 (8%)

Query: 241 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 300
                   +L    +T  + +       ++  +  +N++++         L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 301 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 360
           GN+        L+    L  L       L +      +  +    +   +     I    
Sbjct: 77  GNK--------LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
             +   Q+  +   N   +  +    L+       ++     +        + L  L LS
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLS 186

Query: 421 YNRLNGSIPDWVDGLSQLSHLIL 443
            N +  S    + GL  L  L L
Sbjct: 187 KNHI--SDLRALAGLKNLDVLEL 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 54/320 (16%), Positives = 90/320 (28%), Gaps = 20/320 (6%)

Query: 315 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374
                 L LNN  L   +P    +L  L   +   N L   +P     L SL + + +  
Sbjct: 37  DRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 375 NISGSLPSCFHPLSIKQVHLSKNMLHG------QLKRGTFFNCSSLVTLDLSYNRLNGSI 428
            +S   P   +             L                     +   L +     + 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488
            + +  L  L  L   + +      +    L+   ++  +N     P        T   +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548
            +N                 +        E+ +  T           LS L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 608
               I         ++ LN+S+N L   +P+    L+    L  S N L  ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNL 326

Query: 609 KTLEVFSVAYNNLSGEIPEW 628
           K L    V YN L  E P+ 
Sbjct: 327 KQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 58/345 (16%), Positives = 103/345 (29%), Gaps = 32/345 (9%)

Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
               L L+N  L     S      +L+ L    N    E+P+      SL+ L ++NN+L
Sbjct: 39  QAHELELNNLGLS----SLPELPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNL 90

Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
                        L+Y+ + NN LE    ++      +  +D +       LP     ++
Sbjct: 91  KALSDLP----PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
                L +      L   T     +     L    L+       + + +    +     L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 449 EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 508
               +                  L    P            ++     +        E  
Sbjct: 207 TTIYADNNL-----------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 568
              L +    ++     +        +   L  L++S NKLI  +P     L R   L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIA 311

Query: 569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 613
           S N+L   +P    NLK    L +  N L  + P     ++ L +
Sbjct: 312 SFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 56/315 (17%), Positives = 95/315 (30%), Gaps = 23/315 (7%)

Query: 17  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
              HL+ L  + N L   LP       SL+ L V +N L       PL+    +    L 
Sbjct: 56  LPPHLESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 77  NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA------PKFQLNTLSLSSN 130
                   S   + +     +    +     E   + +               T   + N
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171

Query: 131 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 190
                +    L  +  +   ++       +   +L         L  + D       L +
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
             +      ++  +     +   I   L  L      +NA    I S       L+ L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ 310
           SNN L  E+P         L+ L  S N+L            NL+ L +E N    E P 
Sbjct: 292 SNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFPD 341

Query: 311 SLSKCSSLEGLYLNN 325
                 S+E L +N+
Sbjct: 342 IP---ESVEDLRMNS 353

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 40  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99
             + +   +    + +T +++ +    L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 159
            ++N+I       +           L+  +         K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 160 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 219
                 L   + L+ L+L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 277
            L       N +    P    ++  L  + L NN ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 18/211 (8%)

Query: 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 452
              K+ +   +   T  +   + TL      +     + V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 453 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ---------FEIFF 503
            ++         L  +       I       TL  + +  +              +    
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 504 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 563
            I          N +        ++ +     LS L+ L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 564 QTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 594
             ++L +N ++   P   +N  ++  + L+N
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             ++ + +    + +  ++      L  ++ L      +     VQ   LN L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 470 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 529
           N +    P            S +   +                  Q  ++      +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 530 IYQGKVLSLLSGLDLSCNKLIGHI---------PPQIGNLTRIQTLNLSHNNLTGSIPST 580
           +    +  + +   L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 581 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616
            ++L ++  + L NN+++   P  L     L + ++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 3/163 (1%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 353
           +Q LQL  N+      +       L+ L L +N +   +P    +L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 354 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 313 SKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILD 370
           + C      +      L  +IPR +        +++ +N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N+++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 431 WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487
             + L+ L+ L L  N       +        +   L+        P    +  + +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKD 176

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 41/325 (12%), Positives = 90/325 (27%), Gaps = 31/325 (9%)

Query: 317 SLEGLYLNNNSL----LGKIPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQI 368
           S+EG  L  +++       +   L     ++ I++  N +       +         L+I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 369 LDISDN---NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
            + SD     +   +P     L    +   K                  +   LS +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL--------HGPIP 477
             +    +GL   +   +     E  V+ +      L+ +    N L             
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537
                 T+    +       +  +   +   Q        +       + A     K   
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 538 LLSGLDLSCNKLIGHIPPQIGN------LTRIQTLNLSHNNLTGSIPST-----FSNLKH 586
            L  L L+   L       + +         +QTL L +N +      T        +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 587 VESLDLSNNKLNGKIPHQLVELKTL 611
           +  L+L+ N+   +    + E++ +
Sbjct: 304 LLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 41/326 (12%), Positives = 92/326 (28%), Gaps = 25/326 (7%)

Query: 20  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLS 76
            L+   I + D + S+   +    S++ + +S N +    +   S  +     +E    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 77  NNYFQIPISLEP---------LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSL 127
           + +        P         L    +L      +N       E       K        
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 128 SSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFR 187
             N G G      +        V+                N  +  ++     +      
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 188 LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 247
           L      +         ++         ++       N   +    ++  +  +   L+ 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 248 LDLSNNHLTGEIPEHLA-----VGCVNLQFLALSNNNLQGHLFSR-----NFNLTNLQWL 297
           L L++  L+      +      +  + LQ L L  N ++           +  + +L +L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 298 QLEGNRF--VGEIPQSLSKCSSLEGL 321
           +L GNRF    ++   + +  S  G 
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 40/293 (13%), Positives = 78/293 (26%), Gaps = 54/293 (18%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLALSNNNL---------- 280
           S+ +       ++ + LS N +  E    L+       +L+    S+             
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS-----------------LSKCSSLEGLYL 323
              L         L  ++L  N F     +                   +      G  +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-------------LDSLQILD 370
                   + +   N   L+ II   N LE     E+ +             + +    +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430
             ++ +   L  C     +     +   L          +  +L  L L+   L+     
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 431 WV------DGLSQLSHLILGHNNLEGEVSVQLCE-----LNQLQLLDLSNNNL 472
            V           L  L L +N +E +    L       +  L  L+L+ N  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 321 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380
           L+L +  L   +   L  L  + ++ + +N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL---NGSIPDWVDGLSQ 437
               +   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 438 LSHLI 442
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---------------------T 580
           L L+   L   +   +  L  +  L+LSHN L    P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 581 FSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE 624
            +NL  ++ L L NN+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHG 474
                     Q   L+L +N L+   ++Q L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
           ++      +  +  LDLS+N L    P   A+ C+ +    L  ++          NL  
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV----LQASDNALENVDGVANLPR 66

Query: 294 LQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSL------LGKIPRWLGNLTRL 342
           LQ L L  NR       Q L  C  L  L L  NSL        ++   L +++ +
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
            +     +  LD+S+N +R   P      L  L V   S N           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--ALENVDGVANLPRLQEL 70

Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
            L NN L         V C  L  L L  N+L      +      L  + 
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 32/154 (20%), Positives = 48/154 (31%), Gaps = 38/154 (24%)

Query: 441 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFE 500
           L L H +L   V   L +L  +  LDLS+N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----------------------- 37

Query: 501 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ-IGN 559
                         +  E+ + +   +  +     L  L  L L  N+L      Q + +
Sbjct: 38  ---------ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 88

Query: 560 LTRIQTLNLSHNNLT---GSIPSTFSNLKHVESL 590
             R+  LNL  N+L    G        L  V S+
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 7e-07
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 296
           + + N    + LDL    +   + E+L         +  S+N +          L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG----KIPRWLGNLTRLQYIIMPNNHL 352
           L +  NR              L  L L NNSL+          L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 353 EGPIPVEFCQLDSLQILD 370
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 3/127 (2%)

Query: 555 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 614
            Q  N  R + L+L    +   I +  + L   +++D S+N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 615 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLI 674
            V  N +               E     N+ +    L    S  ++    I      N  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 675 DMDSFFI 681
               + I
Sbjct: 129 HYRLYVI 135

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 338 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
           N  R + + +    +   I      LD    +D SDN I   L        +K + ++ N
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73

Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN---LEGEVSV 454
            +    +            +  + + +     D +  L  L++L +  N     +     
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 455 QLCELNQLQLLDLS 468
            + ++ Q+++LD  
Sbjct: 134 VIYKVPQVRVLDFQ 147

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 31/232 (13%), Positives = 57/232 (24%), Gaps = 4/232 (1%)

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 424
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484
              I   V       H I                 N   L  L  +N      P      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 485 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544
                      D             G   +              +        L      
Sbjct: 126 -SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
             N L           +    L++S   +         NLK + +    N K
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 25/211 (11%), Positives = 48/211 (22%), Gaps = 3/211 (1%)

Query: 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 471
            + + L     +L         G   L  + +  N++   +   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 472 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531
            +           L        S     +    +       +             I    
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 591
              +      L L+ N +              +     +NNL       F        LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 592 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
           +S  +++    + L  LK L   S    NL 
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 11/228 (4%)

Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284
            + +  +   +P +         L      L        +      +     N+ L+   
Sbjct: 17  ESKVTEIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 344
                NL  L  +++E    +  I     +        L +N+ +  +P      +  + 
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 345 IIMPNNHLEGPIPVEFCQLDSLQI---LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 401
           ++   +++          +        L ++ N I       F+   + +++LS N    
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
           +L    F   S  V LD+S  R++      ++ L +L        NL+
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 27/211 (12%), Positives = 58/211 (27%), Gaps = 4/211 (1%)

Query: 43  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 102
            +   L     +L   I          +E++ +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 103 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162
                 I        P  Q     +S+           ++    +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLL--ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222
           N  +  + +   L+L  + +        +  +        NNN    +P  +        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPV 204

Query: 223 VFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
           + + S   +         N+K L+     N 
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL 597
            SGL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651
               P        L   ++++N L   +     Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNN 350
                L+   +  + +    L    +L  LY+ N   L  +    L  L  L+ + +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 351 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 410
            L    P  F     L  L++S N +          LS++++ LS N LH          
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLS 439
                   +   +L       +  +   S
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 31/119 (26%)

Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
                    + L  L + N      +      G   L+ L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
           L  L L  N       +++   S  E +   N        RWL          +P   L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 1/147 (0%)

Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
              L  + +    +   HL       +    +  +LQ         L  L+ L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364
               P +      L  L L+ N+L     + +  L+  + ++  N            + +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 365 SLQILDISDNNISGSLPSCFHPLSIKQ 391
              +  + +  +          +    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 469
             +  +   L    +  ++      L Q++ L      ++    V+   LN L  ++ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 470 NNLHGPIP-----------PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 518
           N L    P              +        +N ++          I          N  
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 578
             E ++  I+ I     L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 187

Query: 579 STFSNLKHVESL 590
           S  + L ++ESL
Sbjct: 188 SVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 5/161 (3%)

Query: 290 NLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348
             T  + ++L G    + ++  +LS   + + L L+ N+ + KI   L  +  L+ + + 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLG 78

Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
            N            +           N   SL      ++++ +++S N +    +    
Sbjct: 79  RNL--IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
                L  L L+ N L     +          ++    NL+
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	717
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.62

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.2e-30  Score=257.77  Aligned_cols=259  Identities=35%  Similarity=0.602  Sum_probs=208.5

Q ss_pred             CCCEEEccCCcCcC--cCCcccCCCCCCCEEEccC-CcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEe
Q 005038          317 SLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH  393 (717)
Q Consensus       317 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  393 (717)
                      .++.|+++++.+.+  .+|..++.+++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+            
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~------------  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc------------
Confidence            45566666665554  3556666677777777765 56666667777777777777777776653222            


Q ss_pred             ccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCC-CEEEccCCcC
Q 005038          394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL-QLLDLSNNNL  472 (717)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l  472 (717)
                                  ..+..+.+|+++++++|.+...+|..+..++.++.+++++|.+.+..|..+..+..+ +.+++++|++
T Consensus       119 ------------~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         119 ------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ------------ccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                        125566778888888888777788888888888888888888888888888777775 7888999988


Q ss_pred             ccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCC
Q 005038          473 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH  552 (717)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  552 (717)
                      ++..|..+....                                                      ...++++++...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             cccccccccccc------------------------------------------------------cccccccccccccc
Confidence            887776655433                                                      45688999999889


Q ss_pred             CcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc
Q 005038          553 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  632 (717)
Q Consensus       553 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  632 (717)
                      +|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|+.+..+++|++|++++|+++|.+|++ ..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccC
Confidence            99999999999999999999996655 6888999999999999999999999999999999999999999999985 788


Q ss_pred             CCCCcccccCCcCCCCCCCCCCC
Q 005038          633 ATFNESSYEGNTFLCGLPLPICR  655 (717)
Q Consensus       633 ~~l~~~~~~~n~~~c~~~l~~C~  655 (717)
                      ++++.+.+.+|+.+||.|++.|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999999999998884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.3e-26  Score=237.17  Aligned_cols=341  Identities=23%  Similarity=0.296  Sum_probs=190.9

Q ss_pred             CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038          169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL  248 (717)
Q Consensus       169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  248 (717)
                      +.+|++|+++++.++..  ..++.+++|++|++++|+++ .++.  ...+++|++|++++|.+.+..  .++.+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccccc
Confidence            34455555555554432  23444555555555555554 2221  222445555555555544321  25555666666


Q ss_pred             EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038          249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL  328 (717)
Q Consensus       249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  328 (717)
                      +++++.++ .++...  ....+.......+.+.....................     .....+.............+..
T Consensus       116 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccc-cccccc--cccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccccc
Confidence            66666555 222221  234455555555544332222211111111111111     1111233333334444443332


Q ss_pred             cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCcccc
Q 005038          329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF  408 (717)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  408 (717)
                      .  ....+..+++++.+++++|.+++..+  +...++|++|++++|.++.                        ++  .+
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~------------------------~~--~l  237 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------------------------IG--TL  237 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------CG--GG
T ss_pred             c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC------------------------cc--hh
Confidence            2  22334445555555555555554332  2334455555555554431                        11  25


Q ss_pred             CCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038          409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  488 (717)
Q Consensus       409 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  488 (717)
                      ..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..++.++.++++.|.+.+..  .+        
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~--------  303 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PI--------  303 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GG--------
T ss_pred             hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--cc--------
Confidence            566778888888888775433  667788888888888877543  3667778888888888775321  11        


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038          489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  568 (717)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  568 (717)
                                                                   ..++.++.|++++|++++..  .+..+++|++|++
T Consensus       304 ---------------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         304 ---------------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             ---------------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             ---------------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence                                                         12346888888888888653  3788889999999


Q ss_pred             CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCC
Q 005038          569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  619 (717)
Q Consensus       569 s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N  619 (717)
                      ++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9998884 33 58888999999999999886544  788889999998887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.5e-25  Score=233.05  Aligned_cols=192  Identities=26%  Similarity=0.313  Sum_probs=125.5

Q ss_pred             cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038          238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS  317 (717)
Q Consensus       238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  317 (717)
                      .+..+++++.+++++|.++ .++..  ..+++|++|++++|.++.  ...+..+++|+.|++++|.+.+..  .+..+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~-~~~~~--~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQIS-DITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCC-CCGGG--GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccceeeccCCccC-CCCcc--cccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--ccccccc
Confidence            3455566666666666666 33222  235667777777776654  234556677777777777766433  2666777


Q ss_pred             CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCc
Q 005038          318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  397 (717)
Q Consensus       318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  397 (717)
                      |++|+++++.+.+..  .+..++.++.+.+..|.+.+.  ..+..+++++.|++++|++.+..                 
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~-----------------  323 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS-----------------  323 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-----------------
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc-----------------
Confidence            777777777776432  356677778888887777643  34667778888888887776321                 


Q ss_pred             ccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038          398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  470 (717)
Q Consensus       398 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  470 (717)
                               .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       324 ---------~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 ---------PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ---------GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ---------ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                     14456777777777777764 23 46777777777777777775543  667777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.3e-27  Score=240.70  Aligned_cols=251  Identities=31%  Similarity=0.500  Sum_probs=180.2

Q ss_pred             CCCCeEECcCCcCcc--cCcccccCCCCCCEEEccC-CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038          292 TNLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  368 (717)
Q Consensus       292 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  368 (717)
                      .++++|+|+++.+.+  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            356666777666665  3566677777777777765 5666667777777777777777777777666666777777777


Q ss_pred             EEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCC-cEEEcCCCc
Q 005038          369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL-SHLILGHNN  447 (717)
Q Consensus       369 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-~~L~L~~n~  447 (717)
                      +++++|.+.+.+|                       .. +..++.++++++++|.+.+.+|..+..+..+ +.+++++|+
T Consensus       130 l~l~~N~~~~~~p-----------------------~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         130 LDFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccccCc-----------------------hh-hccCcccceeecccccccccccccccccccccccccccccc
Confidence            7777776653322                       22 5566677777777777776677766666554 677777777


Q ss_pred             cccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccc
Q 005038          448 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI  527 (717)
Q Consensus       448 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (717)
                      +++..+..+..+.. ..++++++...+.+|..+...                                            
T Consensus       186 l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~--------------------------------------------  220 (313)
T d1ogqa_         186 LTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSD--------------------------------------------  220 (313)
T ss_dssp             EEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTT--------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccc--------------------------------------------
Confidence            77777766665543 367777777766665544332                                            


Q ss_pred             eeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcC
Q 005038          528 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  607 (717)
Q Consensus       528 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~  607 (717)
                               +.++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|+.|+++++|++|+|++|+++|.+|+ +..
T Consensus       221 ---------~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         221 ---------KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             ---------SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             ---------cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-ccc
Confidence                     267778888888775544 677888899999999999888888899999999999999999888884 577


Q ss_pred             CCCCCEEeccCCcCe
Q 005038          608 LKTLEVFSVAYNNLS  622 (717)
Q Consensus       608 l~~L~~L~l~~N~l~  622 (717)
                      +++|+.+++++|+..
T Consensus       290 L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         290 LQRFDVSAYANNKCL  304 (313)
T ss_dssp             GGGSCGGGTCSSSEE
T ss_pred             CCCCCHHHhCCCccc
Confidence            888999999999744

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.4e-24  Score=217.48  Aligned_cols=205  Identities=24%  Similarity=0.306  Sum_probs=129.4

Q ss_pred             CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038          244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  323 (717)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  323 (717)
                      ..+.++-+++.++ .+|..+   .+++++|++++|+|+...+.+|.++++|++|++++|.+....|..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3456666666666 666654   246777777777776655556777777777777777777666667777777777777


Q ss_pred             cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038          324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  403 (717)
Q Consensus       324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  403 (717)
                      ++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...+.....                      ..
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~  141 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  141 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------------CC
Confidence            7777763 44332  34677777777777766555666666677777666543211                      11


Q ss_pred             CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccc
Q 005038          404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF  480 (717)
Q Consensus       404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  480 (717)
                      ....|..+++|+++++++|.+.. +|..  .+++|+.|++++|..+...+..+..++.++.|++++|.+.+..+..+
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             CccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence            12235566677777777777663 3322  24667777777777766666666666666666666666654444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.5e-23  Score=208.13  Aligned_cols=252  Identities=24%  Similarity=0.281  Sum_probs=137.6

Q ss_pred             CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEE
Q 005038          195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA  274 (717)
Q Consensus       195 ~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  274 (717)
                      ..+.++.++++++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4556666666665 5555432   35555555555555433344555555555555555555 33333333455555555


Q ss_pred             ccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccC
Q 005038          275 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG  354 (717)
Q Consensus       275 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  354 (717)
                      +++|+++.. +..  ....++.|++.+|.+....+..+.....+..++...+...                      ...
T Consensus        86 l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~----------------------~~~  140 (305)
T d1xkua_          86 LSKNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK----------------------SSG  140 (305)
T ss_dssp             CCSSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC----------------------GGG
T ss_pred             ccCCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc----------------------ccC
Confidence            555555432 221  1234455555555444433333444444444444443221                      111


Q ss_pred             CcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC
Q 005038          355 PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG  434 (717)
Q Consensus       355 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  434 (717)
                      ..+..+..+++|+.+++++|.+... +.. ..++++.|++++|......+ ..|..++.+++|++++|.+.+..+.++.+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTI-PQG-LPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSC-CSS-CCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CCccccccccccCccccccCCcccc-Ccc-cCCccCEEECCCCcCCCCCh-hHhhccccccccccccccccccccccccc
Confidence            2223344455555555555544422 111 12344444444444433333 33777788888888888888777777888


Q ss_pred             CCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccc
Q 005038          435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF  480 (717)
Q Consensus       435 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  480 (717)
                      +++|++|+|++|+++. +|..+..+++|++|++++|+|+......|
T Consensus       218 l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         218 TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             STTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhc
Confidence            8888888888888874 46677788888888888888775544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=215.41  Aligned_cols=265  Identities=20%  Similarity=0.217  Sum_probs=206.5

Q ss_pred             CEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcc
Q 005038          319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM  398 (717)
Q Consensus       319 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  398 (717)
                      ..++.+++.++ .+|..+.  +.+++|+|++|.++...+..|.++++|++|++++|++...                   
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-------------------   71 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------------------   71 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------------
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-------------------
Confidence            34566777666 5666553  5688899999988877777788888899998888887632                   


Q ss_pred             cccccCccccCCCCcCCEEeCC-CCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC
Q 005038          399 LHGQLKRGTFFNCSSLVTLDLS-YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  477 (717)
Q Consensus       399 ~~~~~~~~~~~~~~~L~~L~L~-~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  477 (717)
                           ....+..++.++.++.. .+.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|++++..+
T Consensus        72 -----~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          72 -----DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             -----CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----ccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence                 33346677888888765 566776778889999999999999999988788888889999999999999987777


Q ss_pred             cccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccc
Q 005038          478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI  557 (717)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  557 (717)
                      ..|....                                                     .|+.|++++|++.+..+..|
T Consensus       147 ~~f~~~~-----------------------------------------------------~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_         147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred             hHhcccc-----------------------------------------------------chhhcccccCcccccchhhh
Confidence            6665543                                                     68999999999998888899


Q ss_pred             cCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCc
Q 005038          558 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE  637 (717)
Q Consensus       558 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~  637 (717)
                      .++++|+.+++++|++++..|..|.++++|++|++++|++.+..|..|..+++|++|++++|++.+.++.. .-...++.
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~  252 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHh
Confidence            99999999999999999999999999999999999999999888889999999999999999999876531 01112222


Q ss_pred             ccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038          638 SSYEGNTFLCGLPLPICRSPATMPEASIGNEQDD  671 (717)
Q Consensus       638 ~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~~~~~  671 (717)
                      .....+..       .|..|....+..+.+....
T Consensus       253 ~~~~~~~~-------~C~~p~~l~g~~l~~l~~~  279 (284)
T d1ozna_         253 FRGSSSEV-------PCSLPQRLAGRDLKRLAAN  279 (284)
T ss_dssp             CCSEECCC-------BEEESGGGTTCBGGGSCGG
T ss_pred             CcCCCCce-------EeCCchHHcCCccccCCHH
Confidence            22222322       3666777666655554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.7e-24  Score=210.25  Aligned_cols=255  Identities=22%  Similarity=0.247  Sum_probs=208.1

Q ss_pred             CeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCC
Q 005038          295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN  374 (717)
Q Consensus       295 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  374 (717)
                      ..++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|+.|++++|.+....+..+..++.++.+....+
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567777777 5565554  57899999999998766678999999999999999999888888888899999877543


Q ss_pred             -cCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038          375 -NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  453 (717)
Q Consensus       375 -~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  453 (717)
                       .+.                        .++...|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+
T Consensus        91 ~~~~------------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          91 AQLR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             TTCC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccc------------------------cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence             333                        2334448888999999999999887777778888999999999999998888


Q ss_pred             hhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecc
Q 005038          454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  533 (717)
Q Consensus       454 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (717)
                      ..|..+++|+.|++++|.+.+..+..|..++                                                 
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~-------------------------------------------------  177 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------------------------------------------  177 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred             hHhccccchhhcccccCcccccchhhhcccc-------------------------------------------------
Confidence            8888999999999999999887777766544                                                 


Q ss_pred             ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038          534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  613 (717)
Q Consensus       534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~  613 (717)
                          +|+.+++++|++++..|..|.++++|++|++++|++.+..+..|+.+++|++|++++|++.+..+... -...++.
T Consensus       178 ----~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~-l~~~l~~  252 (284)
T d1ozna_         178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQK  252 (284)
T ss_dssp             ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHHHHHH
T ss_pred             ----ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH-HHHHHHh
Confidence                79999999999998889999999999999999999998888899999999999999999986554211 1223455


Q ss_pred             EeccCCcCeecCCCCCc
Q 005038          614 FSVAYNNLSGEIPEWKA  630 (717)
Q Consensus       614 L~l~~N~l~~~~p~~~~  630 (717)
                      +....+++.+..|..+.
T Consensus       253 ~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         253 FRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             CCSEECCCBEEESGGGT
T ss_pred             CcCCCCceEeCCchHHc
Confidence            66677888888776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-22  Score=196.79  Aligned_cols=203  Identities=25%  Similarity=0.296  Sum_probs=109.8

Q ss_pred             CCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEE
Q 005038          362 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL  441 (717)
Q Consensus       362 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  441 (717)
                      ....+.+++.+++.++. +|..+ +++++.|++++|.+. .++..+|..+++|++|+|++|+++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            34556667777777764 33221 234556666666553 23334455566666666666655532 2 23455566666


Q ss_pred             EcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEE
Q 005038          442 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE  521 (717)
Q Consensus       442 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (717)
                      ++++|+++. .+..+..+++|+.|++++|.+.+..+..+..                                       
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------------  122 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG---------------------------------------  122 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---------------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeecccccc---------------------------------------
Confidence            666666553 3334555556666666665554433333222                                       


Q ss_pred             EeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccC
Q 005038          522 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI  601 (717)
Q Consensus       522 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~  601 (717)
                                    +..++.|++++|.+....+..+..+++|+.|++++|++++..++.|..+++|++|+|++|+++ .+
T Consensus       123 --------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         123 --------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             --------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             --------------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                          124555666666555555555555556666666666665555555555666666666666655 45


Q ss_pred             chhhcCCCCCCEEeccCCcCeec
Q 005038          602 PHQLVELKTLEVFSVAYNNLSGE  624 (717)
Q Consensus       602 p~~~~~l~~L~~L~l~~N~l~~~  624 (717)
                      |+.+..+++|+.|++++|++.+.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ChhHCCCCCCCEEEecCCCCCCC
Confidence            55555555566666666655543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.5e-22  Score=194.89  Aligned_cols=199  Identities=25%  Similarity=0.213  Sum_probs=108.5

Q ss_pred             CCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEecc
Q 005038          316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS  395 (717)
Q Consensus       316 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  395 (717)
                      ..+.+++.+++.++ .+|..+.  ++++.|+|++|.+++..+..|..+++|++|++++|+++.                 
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-----------------   69 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-----------------   69 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-----------------
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-----------------
Confidence            34445555555555 3444332  345555565555555444555555555555555555431                 


Q ss_pred             CcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccC
Q 005038          396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP  475 (717)
Q Consensus       396 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  475 (717)
                             ++  .+..+++|++|++++|++.. .+..+.++++|+.|++++|.+.+..+..+..+.+++.|++++|.+.+.
T Consensus        70 -------l~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_          70 -------LQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (266)
T ss_dssp             -------EE--CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             -------cc--cccccccccccccccccccc-cccccccccccccccccccccceeecccccccccccccccccccccee
Confidence                   11  13344556666666666553 344455566666666666666555555555566666666666665544


Q ss_pred             CCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcc
Q 005038          476 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP  555 (717)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  555 (717)
                      .+..+..+.                                                     .++.+++++|++++..+.
T Consensus       140 ~~~~~~~l~-----------------------------------------------------~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_         140 PPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             CTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSCCCTT
T ss_pred             ccccccccc-----------------------------------------------------cchhcccccccccccCcc
Confidence            443333222                                                     455666666666655555


Q ss_pred             cccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC
Q 005038          556 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  598 (717)
Q Consensus       556 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~  598 (717)
                      .|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            5566666666666666665 45555555666666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=4.6e-17  Score=165.96  Aligned_cols=59  Identities=32%  Similarity=0.516  Sum_probs=34.9

Q ss_pred             CccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038          560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  627 (717)
Q Consensus       560 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  627 (717)
                      +++|++|+|++|+++ .+|..   +++|++|+|++|+++ .+|+.   +++|+.|++++|+++ .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            456666666666666 34432   456666666666666 44432   345666677777665 4454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=5.4e-17  Score=165.46  Aligned_cols=314  Identities=26%  Similarity=0.285  Sum_probs=165.6

Q ss_pred             CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEE
Q 005038          195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA  274 (717)
Q Consensus       195 ~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  274 (717)
                      ++++||++++.++ .+|+.    .++|++|++++|+++ .+|+.   ..+|+.|++++|.++ .++..    .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l----p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh----cccccccc
Confidence            5778888888776 56632    356777777777666 44543   345666667666665 44321    23466666


Q ss_pred             ccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccC
Q 005038          275 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG  354 (717)
Q Consensus       275 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  354 (717)
                      +++|.+... | .+..+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+.+|....
T Consensus       105 L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccc-c-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            666666532 2 234556666666666555422 11   1234445555444332  22234445555555555554432


Q ss_pred             CcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC
Q 005038          355 PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG  434 (717)
Q Consensus       355 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  434 (717)
                      ...    .....+.+...++.+. ..+.                         +..++.|+.+++++|.... .+   ..
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~-~~~~-------------------------~~~l~~L~~l~l~~n~~~~-~~---~~  222 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILE-ELPE-------------------------LQNLPFLTTIYADNNLLKT-LP---DL  222 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCS-SCCC-------------------------CTTCTTCCEEECCSSCCSS-CC---SC
T ss_pred             ccc----cccccccccccccccc-cccc-------------------------ccccccccccccccccccc-cc---cc
Confidence            111    1112233333332222 1111                         3445666666666665542 22   22


Q ss_pred             CCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccc
Q 005038          435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK  514 (717)
Q Consensus       435 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (717)
                      ..++..+.+.++.+....    ...+.+...++..+.+.+...-. ..                                
T Consensus       223 ~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~l~~l~-~~--------------------------------  265 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSELP-PN--------------------------------  265 (353)
T ss_dssp             CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEESCCC-TT--------------------------------
T ss_pred             cccccccccccccccccc----ccccccccccccccccccccccc-ch--------------------------------
Confidence            345666666666554221    12334555555554443211000 00                                


Q ss_pred             cccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCC
Q 005038          515 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSN  594 (717)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  594 (717)
                        ..........+..+.  ..+++|++|++++|+++ .+|.   .+++|+.|+|++|+|+ .+|..   +++|++|++++
T Consensus       266 --~~~~~~~~~~~~~~~--~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 --LYYLNASSNEIRSLC--DLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             --CCEEECCSSCCSEEC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             --hcccccccCcccccc--ccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence              000011111111111  12568999999999998 4554   3678999999999999 56643   56899999999


Q ss_pred             CcCCccCchhhcCCCCCCEEecc
Q 005038          595 NKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       595 N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      |+++ .+|+..   .+|+.|.+.
T Consensus       334 N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         334 NPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             SCCS-SCCCCC---TTCCEEECC
T ss_pred             CcCC-CCCccc---cccCeeECc
Confidence            9998 667533   356666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-20  Score=200.47  Aligned_cols=382  Identities=21%  Similarity=0.142  Sum_probs=204.3

Q ss_pred             CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc----cCCccccCCCCCCEEEccCCccccccchhhhh----C
Q 005038          195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----G  266 (717)
Q Consensus       195 ~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~  266 (717)
                      +|++||++++++++..-..+...++++++|++++|.++.    .++..+..+++|++|+|++|.+++.....+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777777643333344446667777777776652    23445667777888888877775322222222    2


Q ss_pred             CCCCCEEEccCcccCcc----CcccccCCCCCCeEECcCCcCcccCcccc-----cCCCCCCEEEccCCcCcCcC----C
Q 005038          267 CVNLQFLALSNNNLQGH----LFSRNFNLTNLQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLLGKI----P  333 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~----~  333 (717)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+     ....................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24677777777777643    23445667777788877777653221111     11222333443333222110    0


Q ss_pred             cccCCCCCCCEEEccCCcccCCc----cccc-CCCCCCCEEEccCCcCcccCCC-----ccccccccEEeccCcccccc-
Q 005038          334 RWLGNLTRLQYIIMPNNHLEGPI----PVEF-CQLDSLQILDISDNNISGSLPS-----CFHPLSIKQVHLSKNMLHGQ-  402 (717)
Q Consensus       334 ~~~~~l~~L~~L~l~~n~~~~~~----~~~~-~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  402 (717)
                      ..+.....++.+.++++......    ...+ ........+++..+.+......     ......++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            11233456667777666543210    0011 1123455666666544321100     01134566666666654321 


Q ss_pred             ---cCccccCCCCcCCEEeCCCCcCCccc----chhhhCCCCCcEEEcCCCccccccchhc-----cCCCCCCEEEccCC
Q 005038          403 ---LKRGTFFNCSSLVTLDLSYNRLNGSI----PDWVDGLSQLSHLILGHNNLEGEVSVQL-----CELNQLQLLDLSNN  470 (717)
Q Consensus       403 ---~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n  470 (717)
                         .....+.....++.+++++|.+....    ..++...+.++.+++++|.++......+     ...+.|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               11122344567777888777765322    2234456777778887777754322221     23456777777777


Q ss_pred             cCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC
Q 005038          471 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  550 (717)
Q Consensus       471 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  550 (717)
                      .++......+...                                                 ....++|++|+|++|++.
T Consensus       323 ~l~~~~~~~l~~~-------------------------------------------------~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSV-------------------------------------------------LAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHH-------------------------------------------------HHHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhcccc-------------------------------------------------cccccchhhhheeeeccc
Confidence            6653211111100                                                 011236888888888875


Q ss_pred             CC----Cccccc-CCccCCeEeCCCcccCCC----CCcCCCCCCCCCEEECCCCcCCccCchh----hc-CCCCCCEEec
Q 005038          551 GH----IPPQIG-NLTRIQTLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQ----LV-ELKTLEVFSV  616 (717)
Q Consensus       551 ~~----~~~~l~-~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~i~~~~p~~----~~-~l~~L~~L~l  616 (717)
                      +.    ++..+. ..+.|++|+|++|++++.    +++.+..+++|++|+|++|+++......    +. ..+.|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            32    222332 356688888888888642    3344556678888888888886433322    22 2346888888


Q ss_pred             cCCcCeecC
Q 005038          617 AYNNLSGEI  625 (717)
Q Consensus       617 ~~N~l~~~~  625 (717)
                      .+|.+....
T Consensus       434 ~~~~~~~~~  442 (460)
T d1z7xw1         434 YDIYWSEEM  442 (460)
T ss_dssp             TTCCCCHHH
T ss_pred             CCCCCCHHH
Confidence            888776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-19  Score=191.23  Aligned_cols=185  Identities=21%  Similarity=0.132  Sum_probs=101.9

Q ss_pred             CCCCCCeEECcCCcCccc-----CcccccCCCCCCEEEccCCcCcCc----CCcccCCCCCCCEEEccCCcccCCcccc-
Q 005038          290 NLTNLQWLQLEGNRFVGE-----IPQSLSKCSSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLEGPIPVE-  359 (717)
Q Consensus       290 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-  359 (717)
                      ..+.++.+++.+|.+...     .+........++.+++++|.+...    ....+...+.++.+++++|.+....... 
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            345555555555543321     112233345566666666554321    1122334455666666666554211111 


Q ss_pred             ----cCCCCCCCEEEccCCcCcccCCCcc-----ccccccEEeccCcccccc----cCccccCCCCcCCEEeCCCCcCCc
Q 005038          360 ----FCQLDSLQILDISDNNISGSLPSCF-----HPLSIKQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNG  426 (717)
Q Consensus       360 ----~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~L~~n~~~~  426 (717)
                          ......|+.+++++|.+.......+     ...+|++|++++|.+...    +........+.|++|++++|.+++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence                1223456666666665543221111     134566666666665432    222212346779999999999875


Q ss_pred             c----cchhhhCCCCCcEEEcCCCccccccchhc----c-CCCCCCEEEccCCcCcc
Q 005038          427 S----IPDWVDGLSQLSHLILGHNNLEGEVSVQL----C-ELNQLQLLDLSNNNLHG  474 (717)
Q Consensus       427 ~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~  474 (717)
                      .    ++..+..+++|++|++++|+++......+    . ....|+.|++.+|.+..
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            3    34456678999999999999875443333    2 34479999999988764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=5e-18  Score=155.91  Aligned_cols=177  Identities=23%  Similarity=0.281  Sum_probs=120.2

Q ss_pred             CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccc-ccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCC
Q 005038          414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS  492 (717)
Q Consensus       414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  492 (717)
                      .++++.++++++ .+|..+.  +++++|+|++|++++ ..+..|..+++|+.|++++|.+.+..+..|....        
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--------   78 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------   78 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--------
Confidence            346777777777 3454332  567778888887764 3455667777788888877777766666555433        


Q ss_pred             CCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcc
Q 005038          493 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  572 (717)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  572 (717)
                                                                   .|++|+|++|++....+..|.++++|++|+|++|+
T Consensus        79 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          79 ---------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ---------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                         67777788887777777778888888888888888


Q ss_pred             cCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038          573 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  650 (717)
Q Consensus       573 l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  650 (717)
                      |+++.|+.|..+++|++|+|++|++.+..+..+ -...++.+.+..+.+++..|..+   ..+.-..+..|.+.|..+
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             ccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCC
Confidence            887777788888888888888888875433211 11235556667777777766543   334445567777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-17  Score=159.79  Aligned_cols=221  Identities=19%  Similarity=0.139  Sum_probs=118.6

Q ss_pred             CEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcc
Q 005038          319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM  398 (717)
Q Consensus       319 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  398 (717)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+..                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~--------------------   67 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------   67 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc--------------------
Confidence            34555555444 3443332  355566666666554444455566666666666655442                    


Q ss_pred             cccccCccccCCCCcCCEEeCCC-CcCCcccchhhhCCCCCcEEEcCCCccccccch-hccCCCCCCEEEccCCcCccCC
Q 005038          399 LHGQLKRGTFFNCSSLVTLDLSY-NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV-QLCELNQLQLLDLSNNNLHGPI  476 (717)
Q Consensus       399 ~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~  476 (717)
                         .++..+|..++.++++.+.. |.+....+..|.++++|+++++++|++....+. .+..++.+..+...++.+....
T Consensus        68 ---~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          68 ---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ---EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ---eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence               22233355555555555543 344444455556666666666666665533221 1222333444444444444333


Q ss_pred             CcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccc
Q 005038          477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  556 (717)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  556 (717)
                      +..|....                                                    ..++.|++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            33332211                                                    14666777777777444444


Q ss_pred             ccCCccCCe-EeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038          557 IGNLTRIQT-LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  618 (717)
Q Consensus       557 l~~l~~L~~-L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~  618 (717)
                      +. ..++++ +++++|+++.+.+..|.++++|++|+|++|+++...+..|..+++|+++++.+
T Consensus       173 ~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         173 FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            43 344443 45677777755556678888888888888888755555666666666665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7e-17  Score=152.82  Aligned_cols=75  Identities=17%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .|+.|++++|.+.+.  ..++++++|++|++++|++++. + .++++++|++|+|++|++++. + .+..+++|++|+++
T Consensus       152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             ccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            466666666666532  2367777888888888887753 3 367778888888888887743 3 26778888888876


Q ss_pred             C
Q 005038          618 Y  618 (717)
Q Consensus       618 ~  618 (717)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2e-16  Score=149.70  Aligned_cols=203  Identities=20%  Similarity=0.239  Sum_probs=113.8

Q ss_pred             EECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCc
Q 005038          224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR  303 (717)
Q Consensus       224 L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  303 (717)
                      ++++.+++++..  .++.+.+|+.|++.+|.++ .++ .+ ..+++|++|++++|.+.+..  .+..+++++++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            344444444322  2344455555555555555 332 22 23555555555555554322  24455555555555555


Q ss_pred             CcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCc
Q 005038          304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC  383 (717)
Q Consensus       304 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  383 (717)
                      ++..  ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|+                
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~----------------  154 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQ----------------  154 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCC----------------
T ss_pred             cccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccc----------------
Confidence            4421  2344555555555555544321  1233344455555544444322  1233344444                


Q ss_pred             cccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCC
Q 005038          384 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ  463 (717)
Q Consensus       384 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  463 (717)
                             .+++++|.+....   .++++++|++|++++|++++. + .++++++|++|++++|++++..+  +..+++|+
T Consensus       155 -------~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~  220 (227)
T d1h6ua2         155 -------YLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLF  220 (227)
T ss_dssp             -------EEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred             -------cccccccccccch---hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCC
Confidence                   4444444442221   277889999999999998854 3 38889999999999999986543  78999999


Q ss_pred             EEEccC
Q 005038          464 LLDLSN  469 (717)
Q Consensus       464 ~L~L~~  469 (717)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            999873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.6e-17  Score=154.98  Aligned_cols=219  Identities=17%  Similarity=0.097  Sum_probs=134.4

Q ss_pred             CEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECC
Q 005038          148 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS  227 (717)
Q Consensus       148 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~  227 (717)
                      +.++.++..++ .+|..+   .+++++|++++|.+....+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56666666666 666543   24677888888887766566677788888888888877655666666667777777765


Q ss_pred             C-CCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCC-CCCeEECcCCcCc
Q 005038          228 M-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFV  305 (717)
Q Consensus       228 ~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~  305 (717)
                      . +.+....+..|..+++|+++++++|.+....+......+..+..+..+++.+....+..|.+++ .++.|++++|++.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 4566566667777888888888888776222222222344455555566666655555555543 5666777777766


Q ss_pred             ccCcccccCCCCCCEE-EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038          306 GEIPQSLSKCSSLEGL-YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  371 (717)
Q Consensus       306 ~~~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  371 (717)
                      ...+..+. ..+++.+ .+++|.++...+..|.++++|+.|++++|+++...+..|.++++|+.+++
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            44444333 3344333 34555665433445666677777777777666554444555555444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.1e-16  Score=146.77  Aligned_cols=135  Identities=23%  Similarity=0.357  Sum_probs=108.8

Q ss_pred             cccceeeCCCCccCCC-CcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038          537 SLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  615 (717)
Q Consensus       537 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~  615 (717)
                      +.+++|+|++|++++. .+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|+++...|+.|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            3688888999888753 456678888899999998888888888888888899999999988877788888888999999


Q ss_pred             ccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC----------------CCCCCCCCCCCCCCCCCCC
Q 005038          616 VAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMPEASIGNEQDD  671 (717)
Q Consensus       616 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~  671 (717)
                      |++|.|++..|.++..+..++.+.+.+|++.|+|+..                +|..|...++..+.+....
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n  180 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS  180 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTT
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHh
Confidence            9999988888888888888888888889888887542                3888887777555444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=140.72  Aligned_cols=146  Identities=26%  Similarity=0.345  Sum_probs=112.7

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      +..+++|++|++++|++++..  .++.+++|++|++++|++++. + .+..+++|+.|++++|.+....  .+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~~--~l~------  131 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDIN--GLV------  131 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCCG--GGG------
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccccccccccccc--ccc------
Confidence            566788889999988888643  367788899999999988853 3 4778889999999888764311  111      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  567 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  567 (717)
                                                                     .++.++.+++++|.+++  +..+..+++|++++
T Consensus       132 -----------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         132 -----------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -----------------------------------------------ccccccccccccccccc--cccccccccccccc
Confidence                                                           13468889999988874  34577889999999


Q ss_pred             CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038          568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  618 (717)
Q Consensus       568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~  618 (717)
                      +++|++++. + .++++++|++|+|++|+++. +| .+..+++|++|++++
T Consensus       163 l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            999999854 3 38889999999999999974 55 588899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.7e-15  Score=140.86  Aligned_cols=164  Identities=23%  Similarity=0.344  Sum_probs=96.8

Q ss_pred             CCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEc
Q 005038          268 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM  347 (717)
Q Consensus       268 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  347 (717)
                      .+|++|++++|.++..  ..+..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            4555666666655532  23455666666666666665432  24556666666666666553 22 3555666666666


Q ss_pred             cCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc
Q 005038          348 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  427 (717)
Q Consensus       348 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  427 (717)
                      ++|.+...  ..+..++.++.+++++|.+++.                          ..+..+++|+++++++|++++.
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--------------------------~~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--cccccccccccccccccccccc--------------------------cccccccccccccccccccccc
Confidence            66655432  2355566666666666655421                          0144566777777777777643


Q ss_pred             cchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccC
Q 005038          428 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  469 (717)
Q Consensus       428 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  469 (717)
                      .  .+.++++|++|++++|++++. + .+.++++|++|+|++
T Consensus       172 ~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             c--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            2  266777777777777777643 3 467777777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.9e-15  Score=137.95  Aligned_cols=161  Identities=25%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038          267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  346 (717)
Q Consensus       267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  346 (717)
                      +.++++|++++|.++..  +.+..+++|++|++++|++++..+  +.++++|++|++++|.+.. ++ .+.++++|+.++
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            34555555555555431  234455556666666665553321  5555666666666655542 22 255556666666


Q ss_pred             ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc
Q 005038          347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  426 (717)
Q Consensus       347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  426 (717)
                      ++++.....  ..+..+++|+.|++++|++..                        ++  .+..+++|++|++.+|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~------------------------~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD------------------------IS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC------------------------CG--GGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc------------------------cc--cccccccccccccccccccC
Confidence            665555432  234555566666666555431                        11  14455666666666666664


Q ss_pred             ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEE
Q 005038          427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL  465 (717)
Q Consensus       427 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  465 (717)
                      ..  .+.++++|++|++++|++++. + .+..+++|+.|
T Consensus       165 l~--~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK--PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             Cc--cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            32  256666777777777766642 2 35566666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.5e-15  Score=138.47  Aligned_cols=142  Identities=31%  Similarity=0.475  Sum_probs=86.2

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  487 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  487 (717)
                      ++.+++|++|++++|++++..+  +.++++|+.|++++|.+....  .+..++.|+.|++++|.+....+  +.      
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~--~~------  125 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LK------  125 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT------
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccccccccccccc--cc------
Confidence            4445666666666666664322  666666777777666665332  35666667777766665542211  11      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038          488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  567 (717)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  567 (717)
                                                                     .++.|+.|++++|++.. + +.+..+++|++|+
T Consensus       126 -----------------------------------------------~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~  156 (199)
T d2omxa2         126 -----------------------------------------------NLTNLNRLELSSNTISD-I-SALSGLTSLQQLN  156 (199)
T ss_dssp             -----------------------------------------------TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             -----------------------------------------------hhhhhHHhhhhhhhhcc-c-ccccccccccccc
Confidence                                                           12356667777776653 2 2466777777777


Q ss_pred             CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEE
Q 005038          568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  614 (717)
Q Consensus       568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L  614 (717)
                      +++|++++.  ..++++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       157 l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            777777743  236777777777777777763 33 46667777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=149.03  Aligned_cols=127  Identities=19%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             CEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCccc-CcccccCCCCCCEEEcc
Q 005038          246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLN  324 (717)
Q Consensus       246 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  324 (717)
                      +++|++++.+.......+..  .....+.++...+.... .......+|++|++++|.+... +...+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46777777665444444432  24556666665554322 2223456788888888876643 23456778888888888


Q ss_pred             CCcCcCcCCcccCCCCCCCEEEccCC-cccCC-cccccCCCCCCCEEEccCCc
Q 005038          325 NNSLLGKIPRWLGNLTRLQYIIMPNN-HLEGP-IPVEFCQLDSLQILDISDNN  375 (717)
Q Consensus       325 ~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~  375 (717)
                      +|.+.+..+..+..+++|+.|+++++ .+++. .......+++|++|++++|.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc
Confidence            88877666677777888888888875 34321 11223456788888887763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.2e-16  Score=149.96  Aligned_cols=183  Identities=21%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             CCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCC-cCCccCCccccccCCCCc
Q 005038          144 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN-NIRGHIPVKIGDVLPSLY  222 (717)
Q Consensus       144 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~~l~~L~  222 (717)
                      ..+|++||++++.+.+.....++..+++|++|++++|.+.+.....+..+++|++|+++++ .+++..-..+...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3478888888887765555555678888888888888877766667777888888888885 454322223334466777


Q ss_pred             EEECCCCC-CCcc-CCcccc-CCCCCCEEEccCC--ccccccchhhhhCCCCCCEEEccCc-ccCccCcccccCCCCCCe
Q 005038          223 VFNNSMNA-LDGS-IPSSFG-NMKFLQILDLSNN--HLTGEIPEHLAVGCVNLQFLALSNN-NLQGHLFSRNFNLTNLQW  296 (717)
Q Consensus       223 ~L~l~~n~-~~~~-~~~~l~-~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~  296 (717)
                      +|++++|. ++.. +...+. ..+.|+.|+++++  .+++.....+...+++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            77777653 2211 111122 2356777777654  2332223333344666666666664 355444555556666666


Q ss_pred             EECcCC-cCcccCcccccCCCCCCEEEccCC
Q 005038          297 LQLEGN-RFVGEIPQSLSKCSSLEGLYLNNN  326 (717)
Q Consensus       297 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  326 (717)
                      |++++| .+++.....++++++|+.|+++++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666664 344333344555566666666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3e-14  Score=119.00  Aligned_cols=100  Identities=28%  Similarity=0.494  Sum_probs=80.1

Q ss_pred             CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038            1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF   80 (717)
Q Consensus         1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~   80 (717)
                      ||+|+++ +++  .++++++|++|++++|+++ .+|..|+.+++|++|++++|.++ .++.  +.++++|++|++++|++
T Consensus         5 Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           5 LAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             CTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCC
T ss_pred             cCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECCCCcc
Confidence            6788887 666  3888888899999988888 55777888888999999988887 6664  88888899999988888


Q ss_pred             cCcCCcccccCCCCCCEEEccCCcccc
Q 005038           81 QIPISLEPLFNYSRLKIFNAENNEIKA  107 (717)
Q Consensus        81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~  107 (717)
                      +.......+..+++|+.|++++|++..
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            743334567788888888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-14  Score=123.53  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc
Q 005038          408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH  473 (717)
Q Consensus       408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  473 (717)
                      |.++.++++|+|++|+|+.. +..+..+++|+.|++++|+++..  +.+..+++|+.|++++|+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc
Confidence            44555666666666666633 44445566666666666666533  23445555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.3e-14  Score=123.35  Aligned_cols=127  Identities=17%  Similarity=0.150  Sum_probs=97.9

Q ss_pred             hhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccc
Q 005038          432 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF  511 (717)
Q Consensus       432 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (717)
                      +.++.++++|+|++|+|+.. +..+..+++|+.|++++|+++.. + .+.                              
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~------------------------------   60 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFP------------------------------   60 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCC------------------------------
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-Ccc------------------------------
Confidence            55677899999999999854 55567788999999999988643 1 122                              


Q ss_pred             ccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCC-cCCCCCCCCCEE
Q 005038          512 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESL  590 (717)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L  590 (717)
                                             .++.|++|++++|+++...+..+..+++|++|++++|++++... ..+..+++|++|
T Consensus        61 -----------------------~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          61 -----------------------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             -----------------------CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             -----------------------cCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence                                   24479999999999986666667788999999999999884322 467888999999


Q ss_pred             ECCCCcCCccCc----hhhcCCCCCCEEe
Q 005038          591 DLSNNKLNGKIP----HQLVELKTLEVFS  615 (717)
Q Consensus       591 ~L~~N~i~~~~p----~~~~~l~~L~~L~  615 (717)
                      ++++|+++. .|    ..+..+++|++||
T Consensus       118 ~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         118 CILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             hcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            999999874 34    3577889999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-13  Score=119.07  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             cceeeCCCCccCCCCcccccCCccCCeEeCCCc-ccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038          539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  617 (717)
Q Consensus       539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~  617 (717)
                      .+.++.+++++. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|+|++|+|+.+.|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            456778887777 45677888888888888766 4876667788888889999999998887778888888889999999


Q ss_pred             CCcCeecCCCCCcccCCCCcccccCCcCCCCCCC
Q 005038          618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  651 (717)
Q Consensus       618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l  651 (717)
                      +|.++...+..+ +...+..+.+.+||+.|+|.+
T Consensus        89 ~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            998885444444 344677888888999888754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.1e-13  Score=109.84  Aligned_cols=85  Identities=32%  Similarity=0.443  Sum_probs=72.0

Q ss_pred             ccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccC-chhhcCCCCCCEE
Q 005038          536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVF  614 (717)
Q Consensus       536 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~-p~~~~~l~~L~~L  614 (717)
                      ++.|++|++++|+++ .+|..++.+++|++|++++|.+++. | .++.+++|++|++++|+++... ...+..+++|++|
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            347999999999998 4677889999999999999999954 4 5889999999999999998543 2578889999999


Q ss_pred             eccCCcCee
Q 005038          615 SVAYNNLSG  623 (717)
Q Consensus       615 ~l~~N~l~~  623 (717)
                      ++++|+++.
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=1.5e-13  Score=138.65  Aligned_cols=240  Identities=17%  Similarity=0.146  Sum_probs=131.7

Q ss_pred             chhhcCCCCCCEEEccCCCCcccCChhh---hhCCCCCCEEEccCCcCccc----------CccCcCCCCCcCEEEccCC
Q 005038          138 PKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFLVNDSLAGP----------FRLPIHSHKRLRQLDVSNN  204 (717)
Q Consensus       138 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~----------~~~~~~~~~~L~~L~ls~n  204 (717)
                      ...+.....++.|+|++|.+.......+   +...++|+.++++++.....          +...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3455556667777777766653322222   23446677777765543211          1122445667777777777


Q ss_pred             cCCccCCcccc---ccCCCCcEEECCCCCCCccCC-------------ccccCCCCCCEEEccCCccccccchhh---hh
Q 005038          205 NIRGHIPVKIG---DVLPSLYVFNNSMNALDGSIP-------------SSFGNMKFLQILDLSNNHLTGEIPEHL---AV  265 (717)
Q Consensus       205 ~i~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~-------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~  265 (717)
                      .+.......+.   ...++|++|++++|.+.....             ......+.|+.+++++|.++......+   ..
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            76543222221   224566777776666532100             011345677777777777653322221   22


Q ss_pred             CCCCCCEEEccCcccCcc-----CcccccCCCCCCeEECcCCcCccc----CcccccCCCCCCEEEccCCcCcCcCCc--
Q 005038          266 GCVNLQFLALSNNNLQGH-----LFSRNFNLTNLQWLQLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLLGKIPR--  334 (717)
Q Consensus       266 ~~~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~--  334 (717)
                      .++.|++|++++|.+...     ....+..+++|++|++++|.+...    +...+..+++|++|++++|.+.+....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            356777777777776532     233455667777777777776532    223456677777777777776543222  


Q ss_pred             --ccC--CCCCCCEEEccCCcccCC----cccccC-CCCCCCEEEccCCcCc
Q 005038          335 --WLG--NLTRLQYIIMPNNHLEGP----IPVEFC-QLDSLQILDISDNNIS  377 (717)
Q Consensus       335 --~~~--~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~l~~n~~~  377 (717)
                        .+.  ..+.|+.|++++|.+...    +...+. ..+.|+.|++++|++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              222  235677777777766532    112221 3566777777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1e-13  Score=139.90  Aligned_cols=89  Identities=18%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             cccccEEeccCccccccc---CccccCCCCcCCEEeCCCCcCCcccch----hhhC--CCCCcEEEcCCCcccccc----
Q 005038          386 PLSIKQVHLSKNMLHGQL---KRGTFFNCSSLVTLDLSYNRLNGSIPD----WVDG--LSQLSHLILGHNNLEGEV----  452 (717)
Q Consensus       386 ~~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~----~~~~--l~~L~~L~L~~n~l~~~~----  452 (717)
                      .++|+.|++++|.+...-   ....+..+++|++|++++|.+.+....    .+..  .+.|++|++++|+++...    
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            344555555555442211   112366789999999999998764333    3333  467999999999987533    


Q ss_pred             chhc-cCCCCCCEEEccCCcCcc
Q 005038          453 SVQL-CELNQLQLLDLSNNNLHG  474 (717)
Q Consensus       453 ~~~l-~~l~~L~~L~L~~n~l~~  474 (717)
                      ...+ .+.++|+.|++++|.+..
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHccCCCCCEEECCCCcCCC
Confidence            2233 257899999999999853

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-12  Score=110.25  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             cccceeeCCCCc-cCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038          537 SLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  615 (717)
Q Consensus       537 ~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~  615 (717)
                      ++|++|++++|+ ++.+.+..|.++++|+.|+|++|+|+.+.|..|..+++|++|+|++|+++...+..+. ...|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-cccccccc
Confidence            367778886654 6766677899999999999999999988888899999999999999999854444554 45799999


Q ss_pred             ccCCcCeec
Q 005038          616 VAYNNLSGE  624 (717)
Q Consensus       616 l~~N~l~~~  624 (717)
                      +++|++.+.
T Consensus       110 L~~Np~~C~  118 (156)
T d2ifga3         110 LSGNPLHCS  118 (156)
T ss_dssp             CCSSCCCCC
T ss_pred             cCCCcccCC
Confidence            999999764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.6e-13  Score=125.24  Aligned_cols=145  Identities=23%  Similarity=0.284  Sum_probs=104.2

Q ss_pred             CcCCEEeCCCC--cCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038          412 SSLVTLDLSYN--RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  489 (717)
Q Consensus       412 ~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  489 (717)
                      ..++.+++.+.  .+. .++..+..+++|++|++++|+++.. + .+..+++|+.|++++|.++.. |..+.        
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~--------   90 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDA--------   90 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHH--------
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc-ccccc--------
Confidence            34555666543  233 4556788899999999999998854 3 477889999999999988632 22111        


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCC
Q 005038          490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  569 (717)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  569 (717)
                                                                   .++.|+.|++++|+++..  ..+..+++|++|+++
T Consensus        91 ---------------------------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          91 ---------------------------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMS  123 (198)
T ss_dssp             ---------------------------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEES
T ss_pred             ---------------------------------------------cccccccccccccccccc--ccccccccccccccc
Confidence                                                         123688999999998843  357888999999999


Q ss_pred             CcccCCCCC-cCCCCCCCCCEEECCCCcCCccCchh----------hcCCCCCCEEe
Q 005038          570 HNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFS  615 (717)
Q Consensus       570 ~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~p~~----------~~~l~~L~~L~  615 (717)
                      +|++++... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999884322 46788999999999999886443322          56688888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.1e-12  Score=117.78  Aligned_cols=125  Identities=22%  Similarity=0.288  Sum_probs=71.2

Q ss_pred             cCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcC
Q 005038          336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSL  414 (717)
Q Consensus       336 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  414 (717)
                      +..+++|+.|++++|.++.. + .+..+++|+.|++++|.+.. ++.... .++|+.|++++|.+.. ++  .+..+++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l~--~~~~l~~L  117 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEKLVNL  117 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-HH--HHHHHHHS
T ss_pred             HhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-ccccccccccccccccccccccc-cc--cccccccc
Confidence            33444444444444444422 1 24444444555554444432 222221 2345555555555432 21  25667888


Q ss_pred             CEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccch----------hccCCCCCCEEE
Q 005038          415 VTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV----------QLCELNQLQLLD  466 (717)
Q Consensus       415 ~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~  466 (717)
                      ++|++++|++++... ..+..+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            899999888875422 4678889999999999988654332          256788999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.6e-07  Score=81.68  Aligned_cols=69  Identities=20%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             hhccCCCCCCEEeCCCCCCcccCCc--cccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccc
Q 005038           37 WCMANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA  107 (717)
Q Consensus        37 ~~~~~l~~L~~L~Ls~n~i~~~i~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  107 (717)
                      ..+.++++|++|+|++|+|+ .++.  ..+..+++|+.|++++|.++..... .+....+|+.+++++|++..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-HHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhh-hhhhccccceeecCCCCcCc
Confidence            33345666666666666665 3432  1244566666666666666532111 12233456666666666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.6e-07  Score=79.33  Aligned_cols=80  Identities=23%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             ccccceeeCCCCccCCCC--cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCch-------hhc
Q 005038          536 LSLLSGLDLSCNKLIGHI--PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH-------QLV  606 (717)
Q Consensus       536 l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~-------~~~  606 (717)
                      ++.|++|+|++|+++...  +..+..+++|+.|+|++|.+++..+-.+.....|+.|++++|++.....+       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            456778888888777543  34466677788888888877754332333445677777888777654432       245


Q ss_pred             CCCCCCEEe
Q 005038          607 ELKTLEVFS  615 (717)
Q Consensus       607 ~l~~L~~L~  615 (717)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            577777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.57  E-value=1.5e-05  Score=69.04  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             cCCCCCCeeeCCCC-CCCCC----cchhccCCCCCCEEeCCCCCCcccCCc---cccCCCCCCCEEECCCCcccCc---C
Q 005038           16 CSLVHLQELYIASN-DLRGS----LPWCMANMTSLRILDVSSNQLTGSISS---SPLVHLTSIEELMLSNNYFQIP---I   84 (717)
Q Consensus        16 ~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~i~~---~~~~~l~~L~~L~L~~n~~~~~---~   84 (717)
                      .+.++|++|+|+++ .++..    +..++...++|++|+|++|.+...-..   ..+...+.|++|++++|.+...   .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35578888888864 45532    334566777888888888877522111   1344567777777777776521   1


Q ss_pred             CcccccCCCCCCEEEccCCccc
Q 005038           85 SLEPLFNYSRLKIFNAENNEIK  106 (717)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~l~  106 (717)
                      -...+...+.|++|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            1123455666777777666443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=2.8e-05  Score=67.31  Aligned_cols=11  Identities=18%  Similarity=0.211  Sum_probs=6.4

Q ss_pred             CCCCCEEEccC
Q 005038          242 MKFLQILDLSN  252 (717)
Q Consensus       242 l~~L~~L~Ls~  252 (717)
                      .++|+.|+|++
T Consensus        14 ~~~L~~L~L~~   24 (167)
T d1pgva_          14 DTDLKEVNINN   24 (167)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCCcEEEeCC
Confidence            45566666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.90  E-value=0.00011  Score=63.36  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=46.2

Q ss_pred             cCCCCCCeeeCCC-CCCCCC----cchhccCCCCCCEEeCCCCCCcccCCc---cccCCCCCCCEEECCCCcccCcC---
Q 005038           16 CSLVHLQELYIAS-NDLRGS----LPWCMANMTSLRILDVSSNQLTGSISS---SPLVHLTSIEELMLSNNYFQIPI---   84 (717)
Q Consensus        16 ~~l~~L~~L~Ls~-n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~i~~---~~~~~l~~L~~L~L~~n~~~~~~---   84 (717)
                      .+.+.|++|++++ +.++..    +..++..+++|++|++++|.+......   ..+...+.++.+++++|.+....   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4557777777776 445432    334455677777777777766522111   12344566777777766654211   


Q ss_pred             CcccccCCCCCCEEEc
Q 005038           85 SLEPLFNYSRLKIFNA  100 (717)
Q Consensus        85 ~~~~~~~l~~L~~L~l  100 (717)
                      -...+...+.|+.+++
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            1123344555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.62  E-value=0.00041  Score=59.63  Aligned_cols=10  Identities=30%  Similarity=0.355  Sum_probs=4.2

Q ss_pred             CCCCEEEccC
Q 005038          243 KFLQILDLSN  252 (717)
Q Consensus       243 ~~L~~L~Ls~  252 (717)
                      ++|++|++++
T Consensus        17 ~~L~~L~L~~   26 (166)
T d1io0a_          17 PDLEEVNLNN   26 (166)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCcEEEcCC
Confidence            3444444443