Citrus Sinensis ID: 005039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
cHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHccccccccEEEEEEEEcccccccEEcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccEEEEEEcccccccHHHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccEEccccccccEEEEEEEEEccccEEEEEEcccccccEEEEcccccccccccccccccEEEEEEccccccEEEEEEEEEEccccccccccccccccccEEEEccccccccHHHHHHHHcccccccccccccccccEEEEccccccc
cHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHcccccHHccEEEEEEHHccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEcccccccccEEEEEccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccHHccccHHHccccccccccEEEEEHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEEcccccEEEEEEcccccccccHHHHHHcccccccccccEEEEEEEEEEccccccccccccccccccEEEEEEccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEEccccccccccccccccEEEEEEccccccccEEEEEEEEEccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc
MLELARVMSQWAHEFKNAVIFLFNtgeeeglngahsfvtqhpwsTTIRVAVDLeamgiggrsalfqagpnlwaVENFAavakypsgqiigqdlfasgvfetatdFQVYTEVAglsgldfaytdksavyhtkndrldllkpgslqhLGENMLDFLLQTasstsipkgnaveeegktvheTGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFIlpqissspvpyvaspwltvGLFAAPAFLGALTGQHLGYIVLKAYLANqyskgmqlspVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVppafaygfleatltpvrltrPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVrfdrnpggtpewlGNVIFAVVIAVVSCLTLVYLLSYVhlsgakgpiAFASFILVGLSIIMVssgiippfseetARAVNIVHIVDasgkfggkqepssYIALysatpgkltKEVEQIKEgfvcgrdnVIDFVTSsmkygcltddnseggwsqsdiptihvnsdtvdtegnenerITQVSIDMKGAKRLTLAINAKEIedftfkvdseelvprdakssiygwhiiefsggknaaSKFEIALYWAKnstraagnsngkekqqplvklrtdfdrltpktervlsklppwcslfegsissqplsflnslpvnf
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPkgnaveeegktvHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVnsdtvdtegneneritqvsidmkgaKRLTLAINAKEiedftfkvdseelvprdAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNstraagnsngkekqqplvklrtdfdrltpktervlsklppWCSLFEgsissqplsflnslpvnf
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVglfaapaflgalTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVrltrplklatlllglavpvlVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
*****RVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQT****************KTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDD********************************QVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAK********************************ERVLSKLPPWCSLFEGS****************
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIP***********VHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDT*D*******RITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTR****SN*KEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTR***********QPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNA*EEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTE*NENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKN*************QQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query717 2.2.26 [Sep-21-2011]
Q3UVK0898 Endoplasmic reticulum met yes no 0.606 0.484 0.262 5e-41
Q7Z2K6904 Endoplasmic reticulum met yes no 0.612 0.485 0.258 3e-40
Q6UPR8898 Endoplasmic reticulum met yes no 0.606 0.484 0.254 2e-38
Q0VGW4876 Endoplasmic reticulum met N/A no 0.622 0.509 0.25 3e-37
Q18600895 Uncharacterized zinc meta yes no 0.450 0.360 0.291 5e-35
Q09216895 Uncharacterized protein B no no 0.458 0.367 0.274 1e-34
O94702822 Uncharacterized zinc meta yes no 0.270 0.236 0.310 2e-22
C4YS59837 Probable zinc metalloprot N/A no 0.188 0.161 0.410 3e-20
Q59RF7837 Probable zinc metalloprot N/A no 0.188 0.161 0.410 3e-20
Q0URQ5959 Probable zinc metalloprot N/A no 0.460 0.344 0.258 2e-19
>sp|Q3UVK0|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2 Back     alignment and function desciption
 Score =  169 bits (429), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 224/495 (45%), Gaps = 60/495 (12%)

Query: 1   MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG 60
           MLE+ RVMS      ++AV+FLFN  EE  L  +H F+TQHPW++ IR  ++LEA G+GG
Sbjct: 219 MLEVLRVMSASPEPMQHAVVFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGG 278

Query: 61  RSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDF 119
           +  +FQ GP N W V+ + + AK+P   ++ Q++F SG+  + TDF++Y +   + G+D 
Sbjct: 279 KELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDL 338

Query: 120 AYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHET 179
           A+ +   +YHTK D  D +   S+Q  G+N+L  L   A+S ++   +         H +
Sbjct: 339 AFIENGYIYHTKYDTADRILIDSIQRAGDNILAVLKHLATSDTLASSSEYR------HGS 392

Query: 180 GVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAA-------VSLALTC 232
            V+FD+LG  ++ Y     ++++  V++  +L     L+   +  A         L +T 
Sbjct: 393 MVFFDVLGLLVIAYPSRVGSIINYMVVMAVVLYLGKKLLRPKHRNANYMRDFLCGLGITF 452

Query: 233 LSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIV 292
           +S    LV  +  +V I+ I   +S     Y+A         A   F+  L  +      
Sbjct: 453 ISWFTSLVTVLIIAVFISLIGQSLSWYNYFYIAVCLYGTATVAKIIFIHTLAKRFYYMNA 512

Query: 293 LKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALV 352
              YL                       E +   S F+    L+AL  Y    S +M+ V
Sbjct: 513 SDLYL----------------------GELFFDTSLFVHCAFLVAL-TYQGFCSAFMSAV 549

Query: 353 WLVPPAFAYGFLEATLTPVRLTRPLK--------LATLLLGLAVPVLVSAGNIIRLANVL 404
           W+V P          LT + + +  K        +A  LLG+ +P L     I  +  + 
Sbjct: 550 WVVFP---------LLTKLCVYKDFKKHGAQGRFVALYLLGMFIPYLYGLYLIWAVFEMF 600

Query: 405 VATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVG 464
              L R         E   +V+ A ++AV   +   Y +++++L  +         ++  
Sbjct: 601 TPILGR------SGSEIPPDVVLASILAVCVMILSSYFITFIYLVNSTKKTILTLILVCA 654

Query: 465 LSIIMVSSGIIPPFS 479
           ++ ++V SG   P+S
Sbjct: 655 VTFLLVCSGAFFPYS 669
Within the ovary, required for the organization of somatic cells and oocytes into discrete follicular structures.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q7Z2K6|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1 PE=1 SV=2 Back     alignment and function description
>sp|Q6UPR8|ERMP1_RAT Endoplasmic reticulum metallopeptidase 1 OS=Rattus norvegicus GN=Ermp1 PE=1 SV=1 Back     alignment and function description
>sp|Q0VGW4|ERMP1_XENLA Endoplasmic reticulum metallopeptidase 1 OS=Xenopus laevis GN=ermp1 PE=2 SV=1 Back     alignment and function description
>sp|Q18600|YTV2_CAEEL Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4 Back     alignment and function description
>sp|Q09216|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorhabditis elegans GN=B0495.7 PE=1 SV=2 Back     alignment and function description
>sp|O94702|YC52_SCHPO Uncharacterized zinc metalloprotease C1259.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.02c PE=3 SV=1 Back     alignment and function description
>sp|C4YS59|M28P1_CANAW Probable zinc metalloprotease CAWG_04918 OS=Candida albicans (strain WO-1) GN=CAWG_04918 PE=3 SV=1 Back     alignment and function description
>sp|Q59RF7|M28P1_CANAL Probable zinc metalloprotease CaO19.2163/9709 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.2163 PE=3 SV=1 Back     alignment and function description
>sp|Q0URQ5|M28P1_PHANO Probable zinc metalloprotease SNOG_05559 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_05559 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
225449044 900 PREDICTED: endoplasmic reticulum metallo 0.991 0.79 0.681 0.0
255584015 921 ATP binding protein, putative [Ricinus c 0.993 0.773 0.665 0.0
449449477 908 PREDICTED: endoplasmic reticulum metallo 0.983 0.776 0.635 0.0
356533971 912 PREDICTED: endoplasmic reticulum metallo 0.981 0.771 0.657 0.0
357443249 917 Endoplasmic reticulum metallopeptidase [ 0.981 0.767 0.632 0.0
297808135 911 hypothetical protein ARALYDRAFT_910108 [ 0.976 0.768 0.593 0.0
15242031 910 vacuolar protein / peptidase dimerizatio 0.974 0.768 0.586 0.0
449519490637 PREDICTED: endoplasmic reticulum metallo 0.884 0.995 0.620 0.0
326494824 907 predicted protein [Hordeum vulgare subsp 0.986 0.779 0.558 0.0
357164731 909 PREDICTED: endoplasmic reticulum metallo 0.988 0.779 0.555 0.0
>gi|225449044|ref|XP_002274159.1| PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera] gi|296086015|emb|CBI31456.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/719 (68%), Positives = 599/719 (83%), Gaps = 8/719 (1%)

Query: 1   MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG 60
           MLELAR +SQWAH FKNAVIFLFNTGEEEGLNGAHSF+TQHPWS+TIR+A+DLEAMGIGG
Sbjct: 188 MLELARGVSQWAHGFKNAVIFLFNTGEEEGLNGAHSFITQHPWSSTIRMAIDLEAMGIGG 247

Query: 61  RSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA 120
           +S++FQAGP+  A+ENFA  AKYP+GQI+ QD+F+SGV ++ATDFQVY EVAGLSGLDFA
Sbjct: 248 KSSIFQAGPHPLAIENFAKAAKYPNGQIVSQDIFSSGVIKSATDFQVYQEVAGLSGLDFA 307

Query: 121 YTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETG 180
           YTD SAVYHTKND+L+LLKPGSLQHLG+NML FLLQTA S ++PKG A+E E KT HET 
Sbjct: 308 YTDNSAVYHTKNDKLELLKPGSLQHLGDNMLAFLLQTAPS-NLPKGKAMEAEEKTGHETA 366

Query: 181 VYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLV 240
           ++FDILG YMV+Y Q FAN+LHNSVI+QS+LIW  SL+MGGYPAAVSLAL+CLS ILM +
Sbjct: 367 IFFDILGTYMVVYRQRFANLLHNSVIMQSILIWVTSLLMGGYPAAVSLALSCLSVILMWI 426

Query: 241 LSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQ 300
            S+SFS+ + F+LP ISSSPVP+VA+PWL VGLFAAPAFLGALTGQHLGY++L +YL++ 
Sbjct: 427 FSLSFSIPVGFLLPLISSSPVPFVANPWLVVGLFAAPAFLGALTGQHLGYLILHSYLSHA 486

Query: 301 YSKGMQ-LSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAF 359
            SK MQ LSPV QA ++K EAERWLFK+GF+QW +LL +GNYYKIGS+Y+ALVWLV PAF
Sbjct: 487 SSKRMQNLSPVIQADVIKFEAERWLFKAGFVQWFVLLMVGNYYKIGSSYVALVWLVSPAF 546

Query: 360 AYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTP 419
           AYGFLEATL+PVRL RPLK+ TLL+G+++P+L+SAG  IR+A  L+ T VRFDRNPG TP
Sbjct: 547 AYGFLEATLSPVRLPRPLKIVTLLMGISLPILLSAGMFIRMAGTLIGTAVRFDRNPGSTP 606

Query: 420 EWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFS 479
           EWLGNVI A+ IA V CLTL YLLSY HLSGAK  I  ++ +L GLS+ +V SG +P F+
Sbjct: 607 EWLGNVIIAIYIAAVICLTLAYLLSYFHLSGAKKSIVLSTCMLFGLSLAVVLSGTVPSFT 666

Query: 480 EETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDF 539
           E+TARAVN+VH+VD + K+G  Q+P SYI+++S TPG L KEVEQI EGFVCGRD V+DF
Sbjct: 667 EDTARAVNVVHVVDTTEKYGEMQDPRSYISIFSTTPGNLIKEVEQINEGFVCGRDKVLDF 726

Query: 540 VTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLA 599
           VT S+KYGCLT+D+  GGWS+SDIP +HV+S   DTEG  + R TQ+SID K + R +LA
Sbjct: 727 VTFSVKYGCLTNDDIGGGWSKSDIPVLHVDS---DTEG--DGRTTQISIDTKVSTRWSLA 781

Query: 600 INAKEIEDFTFKVDSEELVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAG 659
           IN +EIEDF FK +S+ELVP   K S  GWHI +FSGGKN+ ++F++ L+W KNST++A 
Sbjct: 782 INTQEIEDFLFKENSDELVPLGGKGSNNGWHIFQFSGGKNSPTRFDLTLFWRKNSTKSAH 841

Query: 660 NSNGKE-KQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF 717
           N++G+  +Q+PL+KLRTD +RLTPK  RVL+KLP WCS F  S S   L+FL SLPV F
Sbjct: 842 NADGQRAEQRPLLKLRTDVNRLTPKAARVLTKLPSWCSQFGKSTSPYNLAFLTSLPVLF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584015|ref|XP_002532753.1| ATP binding protein, putative [Ricinus communis] gi|223527504|gb|EEF29630.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449449477|ref|XP_004142491.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533971|ref|XP_003535531.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357443249|ref|XP_003591902.1| Endoplasmic reticulum metallopeptidase [Medicago truncatula] gi|355480950|gb|AES62153.1| Endoplasmic reticulum metallopeptidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297808135|ref|XP_002871951.1| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata] gi|297317788|gb|EFH48210.1| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242031|ref|NP_197566.1| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] gi|110741500|dbj|BAE98701.1| 24 kDa vacuolar protein - like [Arabidopsis thaliana] gi|332005489|gb|AED92872.1| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449519490|ref|XP_004166768.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|326494824|dbj|BAJ94531.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326513062|dbj|BAK03438.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357164731|ref|XP_003580148.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
TAIR|locus:2180494910 AT5G20660 [Arabidopsis thalian 0.974 0.768 0.557 1e-212
UNIPROTKB|B3KSB1351 ERMP1 "Endoplasmic reticulum m 0.350 0.715 0.328 3.7e-40
UNIPROTKB|F1MI95892 ERMP1 "Uncharacterized protein 0.350 0.281 0.328 4e-37
MGI|MGI:106250898 Ermp1 "endoplasmic reticulum m 0.361 0.288 0.329 7.9e-37
UNIPROTKB|E7ER77841 ERMP1 "Endoplasmic reticulum m 0.350 0.298 0.328 1.2e-36
UNIPROTKB|F1PSG1896 ERMP1 "Uncharacterized protein 0.350 0.280 0.328 1.6e-36
UNIPROTKB|Q7Z2K6904 ERMP1 "Endoplasmic reticulum m 0.350 0.277 0.328 1.7e-36
UNIPROTKB|F1SMM0905 ERMP1 "Uncharacterized protein 0.350 0.277 0.320 9.4e-36
RGD|727831898 Ermp1 "endoplasmic reticulum m 0.361 0.288 0.318 1.5e-35
UNIPROTKB|E1C3Q6885 ERMP1 "Uncharacterized protein 0.348 0.282 0.332 3.1e-35
TAIR|locus:2180494 AT5G20660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2056 (728.8 bits), Expect = 1.0e-212, P = 1.0e-212
 Identities = 401/719 (55%), Positives = 521/719 (72%)

Query:     1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG 60
             MLELAR  SQ AH FKN++IFLFNTGEEEGLNGAHSF+TQHPWS+T+R+A+DLEAMG GG
Sbjct:   204 MLELARSASQSAHGFKNSIIFLFNTGEEEGLNGAHSFITQHPWSSTVRLAIDLEAMGTGG 263

Query:    61 RSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA 120
             +S++FQAGP+ WA+ENFA  AKYPSGQIIGQDLF SG+ ++ATDFQVY EVAGLSGLDFA
Sbjct:   264 KSSIFQAGPSPWAIENFALAAKYPSGQIIGQDLFTSGIIKSATDFQVYKEVAGLSGLDFA 323

Query:   121 YTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETG 180
             + D +AVYHTKND+++L+KPGSLQHLGENML FLL+ ASS+ +PK   ++ E ++  ++ 
Sbjct:   324 FADNTAVYHTKNDKIELIKPGSLQHLGENMLAFLLRVASSSDLPKDKTLQGEERSNPDSA 383

Query:   181 VYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLV 240
             VYFD+LGKYM++Y Q  A ML+ SVI+QS+LIW  S+ MGGYPA VSL L+CLS IL  +
Sbjct:   384 VYFDVLGKYMIVYRQSLATMLYVSVIMQSILIWVLSVFMGGYPAVVSLILSCLSIILSWI 443

Query:   241 LSISFSVVIAFILPQISSSPVPYVASPWLTVXXXXXXXXXXXXTGQHLGYIVLKAYLANQ 300
              S++FSV +AFILP ISSSPVP+ ++PW+ V            +GQH+ +I L+   +N+
Sbjct:   444 FSVAFSVAVAFILPWISSSPVPFASNPWMVVGLFVSPAILGSISGQHVAFIFLRKKSSNR 503

Query:   301 YSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFA 360
              S  MQ+SP  +  L +LEAERWLFKSGF+QWL+LLALG YYK+GSTY+ALVWLVPPAFA
Sbjct:   504 NSNKMQVSPRLRDNLARLEAERWLFKSGFIQWLVLLALGTYYKLGSTYLALVWLVPPAFA 563

Query:   361 YGFLEATLTPVXXXXXXXXXXXXXXXXXXXXVSAGNIIRLANVLVATLVRFDRNPGGTPE 420
             YG LEATL+P+                    VS+G+ I+L   ++  L+RFD NPG TPE
Sbjct:   564 YGLLEATLSPIRLPKPLKLATLLISLAVPILVSSGSFIQLTGTMIGMLIRFDSNPGVTPE 623

Query:   421 WLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE 480
             WLG+ + AV IA    L++VYLL+Y+HLSGAK  I  A  I+  LS+ +VSSG++P F+E
Sbjct:   624 WLGSALIAVAIATFISLSMVYLLAYIHLSGAKKSIVTALCIITALSLALVSSGVLPAFTE 683

Query:   481 ETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFV 540
             +TARAVN+VH+VD SG     Q+  ++I+L+S TPG L  E EQIKEGF CGR+N IDFV
Sbjct:   684 DTARAVNVVHVVDTSG-----QDQVAFISLFSNTPGNLNMEAEQIKEGFRCGRENKIDFV 738

Query:   541 TSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAI 600
             +   KY C+T  ++E GW + DIP + V +D  + EG    R+  VS+D  G+ R TL I
Sbjct:   739 SFEAKYNCVTKKDAEVGWDKHDIPVLRVINDK-EREGG---RVIAVSMDTGGSSRWTLRI 794

Query:   601 NAKEIEDFTFKVDSEE----LVPRDAKSSIY-GWHIIEFSGGKNAASKFEIALYWAKNST 655
             +  EIEDFT +V  EE    ++ R  KSS   GWH I+F+GGK A + F + LY  +   
Sbjct:   795 DMDEIEDFTMQVGEEEEEELMIERGEKSSNEEGWHQIQFAGGKKAPTSFVLKLYKEEEV- 853

Query:   656 RAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLP 714
                  S+ K+KQ+PL+KLRTD +R TP+ +RVL +LPP+C++F  S S   L+FL SLP
Sbjct:   854 -----SDDKKKQRPLLKLRTDLNRRTPQVQRVLERLPPFCTMFGKSTSPFTLAFLASLP 907
GO:0006508 "proteolysis" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
UNIPROTKB|B3KSB1 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MI95 ERMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:106250 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E7ER77 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSG1 ERMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z2K6 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMM0 ERMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|727831 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3Q6 ERMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
cd03875307 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm 9e-79
pfam04389173 pfam04389, Peptidase_M28, Peptidase family M28 3e-35
cd02690252 cd02690, M28, M28 Zn-peptidases include aminopepti 7e-12
COG2234435 COG2234, Iap, Predicted aminopeptidases [General f 5e-05
cd03877254 cd03877, M28_like_PA, M28 Zn-Peptidases containing 8e-05
cd05642348 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas 3e-04
cd05660306 cd05660, M28_like_PA_1, M28 Zn-Peptidases containi 0.003
>gnl|CDD|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1 Back     alignment and domain information 
 Score =  254 bits (650), Expect = 9e-79
 Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 6/193 (3%)

Query: 1   MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG 60
           MLE+ R +++     K  VIFLFN  EE GL GAH F+TQHPW+  +R  ++LEA G GG
Sbjct: 121 MLEVLRALAKSGEPPKRDVIFLFNGAEENGLLGAHGFITQHPWAKNVRAFINLEAAGAGG 180

Query: 61  RSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA 120
           R+ LFQ GP  W VE +   A +P   ++ QD+F SG+  + TDF+V+ E  GL GLD A
Sbjct: 181 RAILFQTGPGPWLVEAYYKAAPHPFATVLAQDVFQSGLIPSDTDFRVFREYGGLPGLDIA 240

Query: 121 YTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETG 180
           + +   VYHTK D  D + PGSLQH+GEN+L  L   A+S  +        + +      
Sbjct: 241 FIENGYVYHTKYDTADHISPGSLQHMGENLLALLRYLANSDELEN------DSEYRGGDA 294

Query: 181 VYFDILGKYMVLY 193
           VYFD+LG + V+Y
Sbjct: 295 VYFDLLGLFFVVY 307

Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this cluster is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown. Length = 307
>gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28 Back     alignment and domain information
>gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases Back     alignment and domain information
>gnl|CDD|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information
>gnl|CDD|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like Back     alignment and domain information
>gnl|CDD|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 717
KOG2194834 consensus Aminopeptidases of the M20 family [Postt 100.0
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 99.85
KOG2195702 consensus Transferrin receptor and related protein 99.66
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 99.48
COG2234435 Iap Predicted aminopeptidases [General function pr 99.23
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 98.13
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 98.02
COG4882486 Predicted aminopeptidase, Iap family [General func 97.67
PF09940386 DUF2172: Domain of unknown function (DUF2172); Int 97.65
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 97.16
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 96.5
PRK09961344 exoaminopeptidase; Provisional 96.19
PRK09864356 putative peptidase; Provisional 95.95
COG4310435 Uncharacterized protein conserved in bacteria with 95.67
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 94.79
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 94.78
KOG2657596 consensus Transmembrane glycoprotein nicastrin [Si 93.53
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 93.11
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 92.32
PRK09133472 hypothetical protein; Provisional 91.53
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 90.85
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 89.24
PRK06133410 glutamate carboxypeptidase; Reviewed 88.98
PRK08596421 acetylornithine deacetylase; Validated 88.19
PRK06156520 hypothetical protein; Provisional 87.75
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 87.52
TIGR01891363 amidohydrolases amidohydrolase. This model represe 86.54
PRK07318466 dipeptidase PepV; Reviewed 85.49
PRK13983400 diaminopimelate aminotransferase; Provisional 84.49
PRK12893412 allantoate amidohydrolase; Reviewed 84.37
PRK07473376 carboxypeptidase; Provisional 84.15
PRK09104464 hypothetical protein; Validated 84.09
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 82.74
PRK07338402 hypothetical protein; Provisional 82.63
PRK12890414 allantoate amidohydrolase; Reviewed 82.62
PRK12892412 allantoate amidohydrolase; Reviewed 82.31
PRK07906426 hypothetical protein; Provisional 82.31
TIGR01883361 PepT-like peptidase T-like protein. This model rep 82.26
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 82.2
PRK09290413 allantoate amidohydrolase; Reviewed 81.3
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 80.83
KOG2275420 consensus Aminoacylase ACY1 and related metalloexo 80.46
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 80.05
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-116  Score=1004.83  Aligned_cols=632  Identities=30%  Similarity=0.519  Sum_probs=548.5

Q ss_pred             ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCCCCcceEEEeCCChHHHHHHHHh
Q 005039            1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAV   80 (717)
Q Consensus         1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~gG~~~lf~~g~~~~L~~~y~~~   80 (717)
                      |||++|++++..+..+|+|+|+||||||++|+|||+|++||||+++|+++||||++|+|||+++||+||++|+++.|.++
T Consensus       171 mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~  250 (834)
T KOG2194|consen  171 MLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQA  250 (834)
T ss_pred             HHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhh
Confidence            79999999998888899999999999999999999999999999999999999999999999999999966999999999


Q ss_pred             cCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039           81 AKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS  160 (717)
Q Consensus        81 a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~  160 (717)
                      +|||++++++||+||+|++||||||++|++|+|+||+|+|++.|++.|||++|.+++++++++||+|||++++++.+||+
T Consensus       251 ~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~  330 (834)
T KOG2194|consen  251 APHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS  330 (834)
T ss_pred             CCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCccccCCCCCCCeEEecccCceEEEeechhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 005039          161 TSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLV  240 (717)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~vyFd~lg~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (717)
                       ++.+      .+.++.+ +||||++|++|+.|+++++++||+++.   +.++ ....+.+.+.++++.++++.++++++
T Consensus       331 -el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~  398 (834)
T KOG2194|consen  331 -ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGKFILACLLQILSIV  398 (834)
T ss_pred             -hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhhHHHHHHHHHHHHH
Confidence             5432      3445566 999999999999999999999993322   2222 33344443458899999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchhHHHHHHHHHH
Q 005039          241 LSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEA  320 (717)
Q Consensus       241 ~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~~gLy~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  320 (717)
                      +++++++++|++++.++ .+|+||++||+++|||.||+++|+.++|.++ ....|+      ++          +...+.
T Consensus       399 ~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y-~~~~~~------~~----------~~~~~~  460 (834)
T KOG2194|consen  399 VAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALY-AKRSKR------HS----------LEYLQH  460 (834)
T ss_pred             HHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHH-Hhhccc------cc----------cchhhH
Confidence            99999999999999984 6999999999999999999999999999873 211111      01          112345


Q ss_pred             HHHHHHHhHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHhHHhHHHHHHHHHHH
Q 005039          321 ERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRL  400 (717)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~t~~~i~S~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~  400 (717)
                      +++.+|+   +|+++++++|++||||+|++++|+++++++  .+++....+|.++..|..++++||+.|+.+.+|.++++
T Consensus       461 ~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~  535 (834)
T KOG2194|consen  461 DQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSL  535 (834)
T ss_pred             HHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHH
Confidence            6777786   788889999999999999999999999998  55778888899999999999999999999999999999


Q ss_pred             HHHHHhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 005039          401 ANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE  480 (717)
Q Consensus       401 ~~~~ip~~gR~g~~~~~~Pd~~~D~iIA~l~al~t~l~~~fliPli~l~~~~~~i~~~L~~v~~i~~~~~~~~~~fPf~~  480 (717)
                      +.+|+|||||+|.+.  |||    .+||.++++++.+.++|++|++|+||+++.|+.+++.++.+++++++|.++|||++
T Consensus       536 ~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~  609 (834)
T KOG2194|consen  536 VRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRP  609 (834)
T ss_pred             HHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccc
Confidence            999999999999754  895    99999999999999999999999999999999999888888888889999999997


Q ss_pred             Cc-cceeEEEEEEeccCCCCCC---CCCCccccccccC--------CCCchhh---HHhcccCccCCCCccccccccccc
Q 005039          481 ET-ARAVNIVHIVDASGKFGGK---QEPSSYIALYSAT--------PGKLTKE---VEQIKEGFVCGRDNVIDFVTSSMK  545 (717)
Q Consensus       481 ~~-~~Rv~v~H~~r~~~~~~~~---~D~~~~~~l~~~~--------~~~l~~~---~~~C~~el~CG~p~~~~~~~~~~y  545 (717)
                      ++ ++|+.++|++|++|+.++.   +|+++++...|.-        -.+++++   ..+|+++++||+|         +|
T Consensus       610 ~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y  680 (834)
T KOG2194|consen  610 KTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VY  680 (834)
T ss_pred             cccceeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCCce---------ee
Confidence            75 6799999999999987754   4666666544432        1122222   2569999999996         87


Q ss_pred             ccceeccCCCCccCCCC-------CCeeeeecccccccCCCCcceEEEEEEecCCCeEEEEEece---eecCceeecCCc
Q 005039          546 YGCLTDDNSEGGWSQSD-------IPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAK---EIEDFTFKVDSE  615 (717)
Q Consensus       546 ~~~~~~~~~~~~Wlp~~-------~p~l~l~s~~~~~~~~~~~r~~r~~f~l~gp~~~sl~I~p~---~l~~WSf~~~~~  615 (717)
                      .  |.+.+.+++|+|++       +|++.+++|+.    ++++ ..|++|+++|+|||+++|+|.   ++++|||  .++
T Consensus       681 ~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~~----~~~~-~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf--~~~  751 (834)
T KOG2194|consen  681 N--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKTS----LDNG-NLRYEFSITGTDHISLFISPLNDVKVLDWSF--TTS  751 (834)
T ss_pred             e--ccccCccceEecCCccccCCCCceEEEeeccc----cCCC-ceEEEEEEeccCceEEEEEecCCceEEEEec--cCC
Confidence            5  99999999999995       36899999965    4434 578999999999999999994   9999999  444


Q ss_pred             ccccCCCCCCCCccEEEEEEec-CCCceEEEEEEEeccccccccCCCCCCCCCCCeEEEe------cCCCCCCHHHHHHH
Q 005039          616 ELVPRDAKSSIYGWHIIEFSGG-KNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLR------TDFDRLTPKTERVL  688 (717)
Q Consensus       616 ~~~p~~~~~~~~~~y~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~fl  688 (717)
                         |..+  +.+ +|+||++|| ++.|++||+|+++.          ++ .+++| +|++      +|.+++||++++|+
T Consensus       752 ---~~~~--~~~-~~~i~~~yg~~~~p~~F~lel~~~----------~~-~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~  813 (834)
T KOG2194|consen  752 ---PLTE--NKT-PYHIYFSYGLDSTPLNFWLELEKE----------EG-VTDVP-FKLGVSAHYIHDLELITPEYKEFL  813 (834)
T ss_pred             ---cccc--cCC-ceEEEEEeecCCCCceEEEEEeec----------cC-ccCCc-eEEeeeeeeccchhhcCHHHHHHH
Confidence               2333  223 499999999 56999999999997          23 67888 8888      57899999999999


Q ss_pred             hcCCCCcccccccCCCccccc
Q 005039          689 SKLPPWCSLFEGSISSQPLSF  709 (717)
Q Consensus       689 ~~fP~wa~~~~~~~~~~~~~~  709 (717)
                      ++|||||+.++||+|+.+..|
T Consensus       814 ~~lP~~~~~~~~~~~~~~~~~  834 (834)
T KOG2194|consen  814 ETLPSWAATVDWSTSYESWIF  834 (834)
T ss_pred             HhCCchhhccccccchhheeC
Confidence            999999999999999987653

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only] Back     alignment and domain information
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only] Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 1e-13
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 2e-12
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 6e-11
3kas_A640 Transferrin receptor protein 1; transferrin recept 4e-10
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 8e-09
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 2e-07
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 3e-07
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 4e-07
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 1e-06
3fed_A707 Glutamate carboxypeptidase III; metallopeptidase, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309 Back     alignment and structure
 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 22/174 (12%)

Query: 1   MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ--------------HPWSTT 46
           +LE+AR + Q        +  +F   E+ G     +  T               H  + T
Sbjct: 135 LLEIARQIGQK--APGIGIDIIFFDAEDYGTPEFVTDYTPDSWCLGTQFWAKNPHVPNYT 192

Query: 47  IRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 106
               + L+ +G    +   +      A      V         G+    +       D Q
Sbjct: 193 AEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAARDLGYGKYFINAAGGAITDDHQ 252

Query: 107 VYTEVAGLSGLDFAYTDKSA------VYHTKNDRLDLLKPGSLQHLGENMLDFL 154
                  +  +D    D  +       +HT+ D ++ +   +L+  G+ +L+ +
Sbjct: 253 YVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVI 306
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314 Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640 Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444 Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329 Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
3kas_A640 Transferrin receptor protein 1; transferrin recept 99.89
3fed_A707 Glutamate carboxypeptidase III; metallopeptidase, 99.86
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 99.84
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 99.83
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 99.81
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.77
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 99.75
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 99.75
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 99.75
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 99.73
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.73
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 99.69
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 99.65
3k9t_A435 Putative peptidase; structural genomics, joint cen 99.51
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 98.25
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 98.14
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 98.13
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 98.1
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 98.06
2gre_A349 Deblocking aminopeptidase; structural genomi prote 98.02
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 97.71
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 96.76
1ylo_A348 Hypothetical protein SF2450; structural genomics, 96.33
1vho_A346 Endoglucanase; structural genomics, unknown functi 96.19
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 94.96
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 94.89
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 94.69
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 94.56
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 93.6
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 93.4
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 93.02
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 92.42
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 91.32
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 91.24
3isx_A343 Endoglucanase; TM1050, structural genomics, joint 91.0
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 90.51
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 89.52
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 89.48
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 89.06
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 88.8
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 88.35
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 88.07
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 86.58
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 86.06
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 85.69
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 85.59
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 85.05
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 84.05
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 83.64
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 82.45
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 80.83
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 80.17
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
Probab=99.89  E-value=1.7e-23  Score=242.26  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=140.5

Q ss_pred             ChHHHHHHhcC----CCCCCceEEEEecCccccCccchHHHHHhCC-C-ccceeEEEEeccCCCCCcceEEEeCC-ChHH
Q 005039            1 MLELARVMSQW----AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP-W-STTIRVAVDLEAMGIGGRSALFQAGP-NLWA   73 (717)
Q Consensus         1 mLElaR~l~~~----~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp-~-~~~i~a~INlD~~G~gG~~~lf~~g~-~~~L   73 (717)
                      |||+||+|++.    +++|+|+|+|++|+|||.||+||++|+++|. + .+++.++||+||+|.|++.+.++++| ..++
T Consensus       306 lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE~gl~GS~~~~~~~~~~l~~~~~a~iNlD~~~~G~~~l~~~~~p~l~~l  385 (640)
T 3kas_A          306 LLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTL  385 (640)
T ss_dssp             HHHHHHHHHHHHHTSCCCCSEEEEEEEESSGGGTSHHHHHHHHHTTTTGGGTEEEEEECTTCBSCSSEEEEEECGGGHHH
T ss_pred             HHHHHHHHHHhhhhcCCCCCCcEEEEEECCcccCchhHHHHHHhhhhhhhhCEEEEEecccCccCCCceEEEeCHHHHHH
Confidence            68999999853    6799999999999999999999999999884 3 48999999999999988888888777 4677


Q ss_pred             HHHHHHhcCCCCCc-ccccc-ccc--cCCCCCCCChHhhhhcCCCcEEEEeeeCC-CC-CCCCCCCCcCCCCH------h
Q 005039           74 VENFAAVAKYPSGQ-IIGQD-LFA--SGVFETATDFQVYTEVAGLSGLDFAYTDK-SA-VYHTKNDRLDLLKP------G  141 (717)
Q Consensus        74 ~~~y~~~a~~P~~~-~~~~~-~f~--~g~ipsdTD~~~F~~~~GIPgLd~a~~~~-~~-~YHT~~Dt~d~i~~------~  141 (717)
                      ++.+.+.+++|.+. ++.++ .|.  .+.++++|||.+|.++.||||+|+++..+ .| +|||++||+|++++      .
T Consensus       386 ~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~~~sD~~~F~~~~GIP~~~~~~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~  465 (640)
T 3kas_A          386 IEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNK  465 (640)
T ss_dssp             HHHHHTTCBCTTTCSBSCCCTTGGGGCCCCCTTSTHHHHHHHHCCCEEEEEEECSSCCTTTTSTTCCHHHHHHHCTTHHH
T ss_pred             HHHHHHhCCCCCCCCceecccccccccCCCCCCcchHHHHHhCCCCeeeccccCCCCCCCcCCccccHHHHHhhcCcHHH
Confidence            77777777889763 33332 343  46789999999999889999999999865 34 59999999998764      4


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCC
Q 005039          142 SLQHLGENMLDFLLQTASSTSIPKGN  167 (717)
Q Consensus       142 slq~~g~~~l~lv~~la~~~~l~~~~  167 (717)
                      ..+.+++.+..++.+||+++.+|.+.
T Consensus       466 ~h~~~a~~~g~l~l~La~~~~lP~~~  491 (640)
T 3kas_A          466 VARAAAEVAGQFVIKLTHDVELNLDY  491 (640)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCCT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence            57778999999999999999999754
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 717
d3bi1a3304 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep 2e-14
d1de4c3294 c.56.5.5 (C:122-189,C:383-608) Transferrin recepto 2e-13
d2afwa1329 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf 3e-13
d1rtqa_291 c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti 4e-10
d1tkja1277 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr 5e-05
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Glutamate carboxypeptidase II FOLH1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 36/196 (18%)

Query: 1   MLELARVMSQWAHEF---KNAVIFLFNTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEA 55
           + E+ R       E    +  ++F     EE GL G+  +  ++           ++ ++
Sbjct: 106 VHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADS 165

Query: 56  MGIGGRSALFQAGPNL-WAVENFAAVAKYPSGQIIGQDLFAS----------------GV 98
              G  +      P +   V N     K P     G+ L+ S                  
Sbjct: 166 SIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISK 225

Query: 99  FETATDFQVYTEVAGLSGLDFAYTDKS--------AVYHTKNDRLDLLK----PGSLQH- 145
             +  DF+V+ +  G++     YT            +YH+  +  +L++    P    H 
Sbjct: 226 LGSGNDFEVFFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHL 285

Query: 146 -LGENMLDFLLQTASS 160
            + +     + + A+S
Sbjct: 286 TVAQVRGGMVFELANS 301
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329 Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 99.86
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 99.83
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 99.81
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 99.81
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 99.8
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 98.73
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 98.67
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 98.42
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 98.41
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 98.25
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 98.03
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 97.72
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 97.69
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 97.36
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 94.01
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 90.61
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 85.24
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 83.08
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-22  Score=207.17  Aligned_cols=163  Identities=14%  Similarity=0.147  Sum_probs=125.8

Q ss_pred             ChHHHHHHhc----CCCCCCceEEEEecCccccCccchHHHHHhCCC--ccceeEEEEeccCCCCCcceEEEeCCC-hHH
Q 005039            1 MLELARVMSQ----WAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPN-LWA   73 (717)
Q Consensus         1 mLElaR~l~~----~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~--~~~i~a~INlD~~G~gG~~~lf~~g~~-~~L   73 (717)
                      |||+||+|++    .+++|+|+|+|++|+|||.||+||++|+++|+.  .+++.++||+||.|.|++...+++.|. .++
T Consensus       112 llelar~l~~~~~~~g~~P~rtI~f~~~~~EE~Gl~GS~~~~~~~~~~l~~~~~a~iNlD~~~~g~~~~~~~~~p~l~~~  191 (294)
T d1de4c3         112 LLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTL  191 (294)
T ss_dssp             HHHHHHHHHHHHHSSCCCCSEEEEEEEECCCTTTSHHHHHHHHHSHHHHTTTEEEEEECTTCBSCSSEEEEEECGGGHHH
T ss_pred             HHHHHHHHHhhhhhcCCCCCceEEEEEecCccccccCHHHHHHhChhhhccceEEEEecccCcCCCCCCceecChhHHHH
Confidence            6999999964    478999999999999999999999999999875  478999999999998888777776552 344


Q ss_pred             HHHHHHhcCCCCCcccccc----ccccCCCCCCCChHhhhhcCCCcEEEEeeeCCC--CCCCCCCCCcCCCCH------h
Q 005039           74 VENFAAVAKYPSGQIIGQD----LFASGVFETATDFQVYTEVAGLSGLDFAYTDKS--AVYHTKNDRLDLLKP------G  141 (717)
Q Consensus        74 ~~~y~~~a~~P~~~~~~~~----~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~--~~YHT~~Dt~d~i~~------~  141 (717)
                      ++...+.+++|.......+    ..+....+.++||.+|.++.|||++++.+..+.  +.|||++||+|+++.      .
T Consensus       192 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~sD~~pF~~~~GIP~i~~~~~~~~~~~~yHt~~DT~~~l~~~~~~~~~  271 (294)
T d1de4c3         192 IEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNK  271 (294)
T ss_dssp             HHHHHHHSBCTTTCSBSCCCTTGGGGCCCCCTTSTHHHHHHTTCCCEEEEEEECSSCCTTTTSTTCSHHHHHHHCTTHHH
T ss_pred             HHHHHHhcCCccccceeeeccCccccccCCCCCCCchhHHHhCCCeeEEeeccCCCCCCCCCCccccHHHHHHhcCcHHH
Confidence            4444455667765433211    122334677899999987789999999887654  478999999998742      2


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC
Q 005039          142 SLQHLGENMLDFLLQTASSTSI  163 (717)
Q Consensus       142 slq~~g~~~l~lv~~la~~~~l  163 (717)
                      ..+.+++.+..++..|||+.++
T Consensus       272 ~~~a~A~v~~~l~~~LAn~~~l  293 (294)
T d1de4c3         272 VARAAAEVAGQFVIKLTHDVEL  293 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHHHHHHHHHhCcccc
Confidence            3455777888899999998764
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure