Citrus Sinensis ID: 005042
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 717 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FXH6 | 753 | Putative cyclic nucleotid | yes | no | 0.988 | 0.941 | 0.616 | 0.0 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.977 | 0.938 | 0.597 | 0.0 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.926 | 0.926 | 0.624 | 0.0 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.983 | 0.955 | 0.617 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.963 | 0.942 | 0.603 | 0.0 | |
| O65717 | 716 | Cyclic nucleotide-gated i | no | no | 0.956 | 0.958 | 0.506 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.882 | 0.890 | 0.521 | 0.0 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.903 | 0.892 | 0.515 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.919 | 0.946 | 0.502 | 0.0 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.898 | 0.949 | 0.5 | 0.0 |
| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function desciption |
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Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/728 (61%), Positives = 538/728 (73%), Gaps = 19/728 (2%)
Query: 1 MSSDKSGVN-RSGFNL-GVSFVGRGK-KNILNSLRYGMNVGSRWLLRFGESLRSVVARAV 57
MSS+ +G+ RS F L V+ G GK KN S R G+ +GS L G+S S V RAV
Sbjct: 26 MSSNATGMKKRSCFGLFNVTSRGGGKTKNTSKSFREGVKIGSEGLKTIGKSFTSGVTRAV 85
Query: 58 IPTDLKVSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQL 117
P DL+VS+K I DPQD++LL WNR+FV +C ++VS+DPLFFYLP D C+G+D +L
Sbjct: 86 FPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVSVDPLFFYLPIVDNSKNCIGIDSKL 145
Query: 118 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDF 177
A TT R+I+D Y R+ QFRTAYIAPSSRVFGRGELV+DPA I+ RY R F+VDF
Sbjct: 146 AVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYLTRYFIVDF 205
Query: 178 LSVLPIPQLLVSVYLSDTRA-KVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFV 236
L+VLP+PQ+ V +L ++ V TK+AL ++I QY+PR +R PL SELKKT G F
Sbjct: 206 LAVLPLPQIAVWKFLHGSKGTDVLPTKQALLHIVITQYIPRFVRFIPLTSELKKTAGAFA 265
Query: 237 ESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQAC--NQTGRCSHSFLYCHNTN 294
E A GAAYYLL Y++ SHI GAFWY+L+VERN TC + AC + LYC +
Sbjct: 266 EGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTCLRSACKVQPDPKVCVQILYCGSKL 325
Query: 295 FGGFD-DWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLW 353
+ DW ++ + + C A +FN+GIY +A++ I S F SK YCLW
Sbjct: 326 MSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIYSQAVSSGIV---SSTTFFSKFCYCLW 382
Query: 354 FGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIK 413
+GLQNLSTLGQGL+TSTY E++FSI I +AGL+L ALLIGNMQTYL SLTVRLEEMRIK
Sbjct: 383 WGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIK 442
Query: 414 RRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNL 473
RRDSEQWMHHR LPQ+LRERVRRYD +KWLETRGVDEE++VQ+LPKDLRRDIKRHLCLNL
Sbjct: 443 RRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNL 502
Query: 474 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR 533
VRRVPLFANMDERLLDAICERLKPSL TE T +VREGDPV EML IIRG LESVTTDGGR
Sbjct: 503 VRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGR 562
Query: 534 TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVAS 593
+GF+NRG+LKEGDFCGEELLTWALDPK+ +NLP STRTV+AL EVEAF+L AEELKFVAS
Sbjct: 563 SGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVAS 622
Query: 594 QFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQR-----LKEEGERID 648
QFRRLHSRQVQ TFRFYS QWRTWAACFIQA WRR +RK A +R + + E +
Sbjct: 623 QFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRRKIAELRRKEEEEEEMDYEDDE 682
Query: 649 YGEVSHGALADQPSADSGDAPSRLRATVLASRFAANALRGHRHRASVATSPPRRLINLQK 708
Y + + G + + + G + + LR+TV ASRFAANAL+GH+ R T + L+NL K
Sbjct: 683 YYDDNMGGMVTRSDSSVGSSST-LRSTVFASRFAANALKGHKLR---VTESSKSLMNLTK 738
Query: 709 PSEPDFNA 716
PSEPDF A
Sbjct: 739 PSEPDFEA 746
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Putative cyclic nucleotide-gated ion channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 717 | ||||||
| 224075708 | 739 | predicted protein [Populus trichocarpa] | 0.986 | 0.956 | 0.651 | 0.0 | |
| 224115784 | 745 | predicted protein [Populus trichocarpa] | 0.990 | 0.953 | 0.647 | 0.0 | |
| 255543327 | 1005 | Cyclic nucleotide-gated ion channel, put | 0.990 | 0.706 | 0.641 | 0.0 | |
| 225445859 | 743 | PREDICTED: probable cyclic nucleotide-ga | 0.987 | 0.952 | 0.644 | 0.0 | |
| 255577001 | 735 | Cyclic nucleotide-gated ion channel, put | 0.967 | 0.944 | 0.624 | 0.0 | |
| 449459438 | 731 | PREDICTED: putative cyclic nucleotide-ga | 0.963 | 0.945 | 0.636 | 0.0 | |
| 225443164 | 743 | PREDICTED: putative cyclic nucleotide-ga | 0.990 | 0.955 | 0.625 | 0.0 | |
| 298204680 | 719 | unnamed protein product [Vitis vinifera] | 0.956 | 0.954 | 0.623 | 0.0 | |
| 356500659 | 728 | PREDICTED: probable cyclic nucleotide-ga | 0.959 | 0.945 | 0.628 | 0.0 | |
| 356562567 | 728 | PREDICTED: probable cyclic nucleotide-ga | 0.959 | 0.945 | 0.626 | 0.0 |
| >gi|224075708|ref|XP_002304729.1| predicted protein [Populus trichocarpa] gi|222842161|gb|EEE79708.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/721 (65%), Positives = 561/721 (77%), Gaps = 14/721 (1%)
Query: 1 MSSDKSGVNRSGFNL-GVSFVGRGKKNILNSLRYGMNVGSRWLLRFGESLRSVVARAVIP 59
++S+K G+ + FNL G + G GKKN SLRYG+ GS +L G SLR+ V RAV P
Sbjct: 29 VTSNKKGMKKLRFNLDGSNIAGHGKKNASKSLRYGVKRGSEGMLTIGRSLRTGVTRAVFP 88
Query: 60 TDLKVSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAA 119
DLKVS+K+I DPQD+SLL WNRL + +C +SVS+DPLFFYLP F+ CLGMD LAA
Sbjct: 89 EDLKVSEKMIFDPQDKSLLLWNRLLIISCILSVSVDPLFFYLPVFNYRMACLGMDTNLAA 148
Query: 120 AITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLS 179
ITT R++LD Y R+ QFR AY+APSSRVFGRGELV+DPA I+ RY R F+VDFLS
Sbjct: 149 TITTMRTLLDVFYLIRMALQFRIAYVAPSSRVFGRGELVIDPAQIATRYLSRYFIVDFLS 208
Query: 180 VLPIPQLLVSVYLSDTR--AKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVE 237
VLP+PQ++V YL++ + ++V +TK+AL +++ LQY+PR R PL S+LKKT G F E
Sbjct: 209 VLPLPQIVVWKYLNNKKKGSEVLATKQALLIIVFLQYIPRFARFLPLGSDLKKTAGSFAE 268
Query: 238 SALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGG 297
SA GAAYYLL Y++ SHI GAFWYLLA+ER TCW++AC +G+C+ FLYC N G
Sbjct: 269 SAFAGAAYYLLWYMLASHIAGAFWYLLAIERKDTCWREACILSGKCNIDFLYCGNKALPG 328
Query: 298 FDDWKQTREHIIDHKCHAMEG-NPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGL 356
F W++ + ++ +KC E NP FN+GIY +A++ +I S F+SK FYCLW+GL
Sbjct: 329 FHGWRRISDEVLGNKCSVSEDDNPRFNYGIYFQAMSSDIV---SSRNFVSKFFYCLWWGL 385
Query: 357 QNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRD 416
QNLSTLGQGL TSTY E+IFSIL+ IAGL+L ALLIGNMQTYL SLTVRLEEMRIKRRD
Sbjct: 386 QNLSTLGQGLLTSTYPLEVIFSILLAIAGLILFALLIGNMQTYLQSLTVRLEEMRIKRRD 445
Query: 417 SEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRR 476
SEQWMHHR LPQDLRERVRRYD +KWLETRGVDEE LVQ+LPKDL+RDIKRHLCLNLVRR
Sbjct: 446 SEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEETLVQSLPKDLKRDIKRHLCLNLVRR 505
Query: 477 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGF 536
VPLFANMDE LLDAICERLKPSL TE T +VREGDPV EML IIRG LESVTTDGGR+GF
Sbjct: 506 VPLFANMDETLLDAICERLKPSLYTEETYIVREGDPVDEMLFIIRGRLESVTTDGGRSGF 565
Query: 537 YNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFR 596
+NRG+LKEGDFCGEELLTWALDPKS+ NLP STRTVRAL EVEAF+L AEELKFVASQFR
Sbjct: 566 FNRGVLKEGDFCGEELLTWALDPKSLGNLPSSTRTVRALTEVEAFALEAEELKFVASQFR 625
Query: 597 RLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLKEEGERIDYGEVSHGA 656
RLHSRQ+QHTFRFYS QWRTWA+CFIQA WRR S+R+ A +RL+EE E + +
Sbjct: 626 RLHSRQLQHTFRFYSQQWRTWASCFIQAAWRRYSRRRAAELRRLEEEEEEV---DYDEED 682
Query: 657 LADQPSADSGDAPSRLRATVLASRFAANALRGHRHRASVATSPPRRLINLQKPSEPDFNA 716
++ + D +RL AT+LASRFAANALRGHR R+ + R L+ LQ+P EPDF+
Sbjct: 683 DDERALVEENDGSARLGATILASRFAANALRGHRLRSLNS----RALMKLQRPPEPDFSE 738
Query: 717 D 717
+
Sbjct: 739 E 739
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115784|ref|XP_002332056.1| predicted protein [Populus trichocarpa] gi|222831942|gb|EEE70419.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255543327|ref|XP_002512726.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547737|gb|EEF49229.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225445859|ref|XP_002278464.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Vitis vinifera] gi|297743648|emb|CBI36531.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255577001|ref|XP_002529385.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223531133|gb|EEF32981.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449459438|ref|XP_004147453.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Cucumis sativus] gi|449528215|ref|XP_004171101.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225443164|ref|XP_002264161.1| PREDICTED: putative cyclic nucleotide-gated ion channel 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|298204680|emb|CBI25178.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356500659|ref|XP_003519149.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356562567|ref|XP_003549541.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 717 | ||||||
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.988 | 0.941 | 0.609 | 2.7e-226 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.898 | 0.898 | 0.623 | 8.1e-225 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.983 | 0.955 | 0.603 | 1.2e-223 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.977 | 0.938 | 0.591 | 5.2e-223 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.891 | 0.871 | 0.612 | 2.3e-218 | |
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.963 | 0.965 | 0.501 | 5e-179 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.919 | 0.946 | 0.491 | 3.7e-172 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.836 | 0.884 | 0.525 | 2.6e-171 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.903 | 0.892 | 0.497 | 4.5e-169 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.895 | 0.891 | 0.500 | 2e-166 |
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2184 (773.9 bits), Expect = 2.7e-226, P = 2.7e-226
Identities = 444/728 (60%), Positives = 530/728 (72%)
Query: 1 MSSDKSGVN-RSGFNL-GVSFVGRGK-KNILNSLRYGMNVGSRWLLRFGESLRSVVARAV 57
MSS+ +G+ RS F L V+ G GK KN S R G+ +GS L G+S S V RAV
Sbjct: 26 MSSNATGMKKRSCFGLFNVTSRGGGKTKNTSKSFREGVKIGSEGLKTIGKSFTSGVTRAV 85
Query: 58 IPTDLKVSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQL 117
P DL+VS+K I DPQD++LL WNR+FV +C ++VS+DPLFFYLP D C+G+D +L
Sbjct: 86 FPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVSVDPLFFYLPIVDNSKNCIGIDSKL 145
Query: 118 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDF 177
A TT R+I+D Y R+ QFRTAYIAPSSRVFGRGELV+DPA I+ RY R F+VDF
Sbjct: 146 AVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYLTRYFIVDF 205
Query: 178 LSVLPIPQLLVSVYLSDTRAK-VFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFV 236
L+VLP+PQ+ V +L ++ V TK+AL ++I QY+PR +R PL SELKKT G F
Sbjct: 206 LAVLPLPQIAVWKFLHGSKGTDVLPTKQALLHIVITQYIPRFVRFIPLTSELKKTAGAFA 265
Query: 237 ESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACN-QTG-RCSHSFLYCHNTN 294
E A GAAYYLL Y++ SHI GAFWY+L+VERN TC + AC Q + LYC +
Sbjct: 266 EGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTCLRSACKVQPDPKVCVQILYCGSKL 325
Query: 295 FGGFD-DWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLW 353
+ DW ++ + + C A +FN+GIY +A++ I +S S F SK YCLW
Sbjct: 326 MSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIYSQAVSSGI-VS--STTFFSKFCYCLW 382
Query: 354 FGLQNLSTLGQGLKTSTYIQEIIFSXXXXXXXXXXXXXXXXNMQTYLTSLTVRLEEMRIK 413
+GLQNLSTLGQGL+TSTY E++FS NMQTYL SLTVRLEEMRIK
Sbjct: 383 WGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIK 442
Query: 414 RRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNL 473
RRDSEQWMHHR LPQ+LRERVRRYD +KWLETRGVDEE++VQ+LPKDLRRDIKRHLCLNL
Sbjct: 443 RRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNL 502
Query: 474 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR 533
VRRVPLFANMDERLLDAICERLKPSL TE T +VREGDPV EML IIRG LESVTTDGGR
Sbjct: 503 VRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGR 562
Query: 534 TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVAS 593
+GF+NRG+LKEGDFCGEELLTWALDPK+ +NLP STRTV+AL EVEAF+L AEELKFVAS
Sbjct: 563 SGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVAS 622
Query: 594 QFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLKEEGERIDYGEVS 653
QFRRLHSRQVQ TFRFYS QWRTWAACFIQA WRR +RK A +R +EE E +DY +
Sbjct: 623 QFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRRKIAELRRKEEEEEEMDYEDDE 682
Query: 654 H-----GALADQPSADSGDAPSRLRATVLASRFAANALRGHRHRASVATSPPRRLINLQK 708
+ G + + + G + S LR+TV ASRFAANAL+GH+ R T + L+NL K
Sbjct: 683 YYDDNMGGMVTRSDSSVGSS-STLRSTVFASRFAANALKGHKLRV---TESSKSLMNLTK 738
Query: 709 PSEPDFNA 716
PSEPDF A
Sbjct: 739 PSEPDFEA 746
|
|
| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FXH6 | CNGC8_ARATH | No assigned EC number | 0.6167 | 0.9888 | 0.9415 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 717 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 1e-15 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 5e-10 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 4e-08 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 4e-06 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 4e-05 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 479 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYN 538
LF+ +D+ L+ + + L+ G ++R+GDP + +++ GS+E D
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI- 59
Query: 539 RGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRL 598
G L GD GE L + TVRAL + E L S FRRL
Sbjct: 60 VGFLGPGDLFGELAL---------LGNGPRSATVRALTDSELLVLP-------RSDFRRL 103
Query: 599 HSRQVQHTFRFY 610
+ R
Sbjct: 104 LQEYPELARRLL 115
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 717 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.59 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.48 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.45 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.43 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.42 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.39 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.36 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.35 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.34 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.3 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.2 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.19 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.16 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.16 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.12 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.1 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.09 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.06 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.05 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.01 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.9 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.73 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.68 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.46 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.12 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 98.0 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.95 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.87 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.7 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.44 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.23 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.99 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.65 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 96.35 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.01 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 95.87 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 95.86 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 94.81 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 94.39 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.12 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 91.51 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 89.82 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 86.63 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 85.21 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 80.44 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-118 Score=1008.79 Aligned_cols=574 Identities=51% Similarity=0.843 Sum_probs=511.0
Q ss_pred CCCCeeecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceee
Q 005042 64 VSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTA 143 (717)
Q Consensus 64 ~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~ta 143 (717)
...++|++|+|++++.||++++++|+|+++++|++|+++..++...| +|..+...++++|+++|+||++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 44467999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred EEcCCCcccCCCeEeeCHHHHHHHHHhhhhHHHhhhccchhhhhhheeecCccchhh-hhhhhhhHHHHHhHhhhhhhhh
Q 005042 144 YIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKVF-STKEALPLLIILQYVPRILRIF 222 (717)
Q Consensus 144 y~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~-~~~~~Lrli~l~q~l~Rl~ri~ 222 (717)
|++++|+ ++|.||++||+||+++||++|++|++|+|++++|.++ ++... .....|..+.++||+||+.|++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999963 7999999999999999999999999999999999887 22222 2334677888899999999999
Q ss_pred hhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccc
Q 005042 223 PLISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWK 302 (717)
Q Consensus 223 ~l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~ 302 (717)
+++.++++..+++.+++|+++++++++|||++||.||+||++|.+++.+||+++|.....|. +++|
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~--~~~~------------ 279 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR--LLSC------------ 279 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc--cccc------------
Confidence 99999999999999999999999999999999999999999999999999976422111111 2222
Q ss_pred cchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHH
Q 005042 303 QTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIG 382 (717)
Q Consensus 303 ~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~ 382 (717)
.+..|+||+|.+ +.+|++|+|||++||||+|||+++|+|..|++|+|++|
T Consensus 280 ---------------~~~~~~fg~~s~---------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m 329 (727)
T KOG0498|consen 280 ---------------YNLSFTFGIYSL---------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM 329 (727)
T ss_pred ---------------CcccccccchhH---------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence 223367887554 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHH
Q 005042 383 IAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLR 462 (717)
Q Consensus 383 i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr 462 (717)
++|+++||++||||++++|+++.+.++||.|++|+++||++|+||++||+||++|+||+|+.++|+||+++|++||++||
T Consensus 330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR 409 (727)
T KOG0498|consen 330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR 409 (727)
T ss_pred HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeec
Q 005042 463 RDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGML 542 (717)
Q Consensus 463 ~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l 542 (717)
+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+ .+...|
T Consensus 410 ~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L 487 (727)
T KOG0498|consen 410 RDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAIL 487 (727)
T ss_pred HHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999888844 458999
Q ss_pred CCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 005042 543 KEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFI 622 (717)
Q Consensus 543 ~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~ 622 (717)
++||+|||+.++|+++ .| +++||+|+|.|+++.|++++|++++++||++++++++|++|+|+++|++|++|++
T Consensus 488 ~~Gd~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~i 560 (727)
T KOG0498|consen 488 GPGDFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFI 560 (727)
T ss_pred cCCCccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhH
Confidence 9999999887778775 22 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccccccccCCCCCCCCCCCCcchhhHHHHHHHHHHHhhc-cccccCcCCCCCc
Q 005042 623 QATWRRKSQRKKATEQRLKEEGERIDYGEVSHGALADQPSADSGDAPSRLRATVLASRFAANALRG-HRHRASVATSPPR 701 (717)
Q Consensus 623 q~~~~~~~~r~~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 701 (717)
|++|+++.+|+.. ......++.-. .. .++.+...+++++.+|++||+|++++ +...++ .....
T Consensus 561 q~a~r~~~~~~~~-~~l~~~~~~~~---------~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 624 (727)
T KOG0498|consen 561 QAAWRRHIKRKGE-EELALEEEESA---------IR----GDDRGSKSLLRAGILASRFAANGRPPLHTAASR--GSSDC 624 (727)
T ss_pred HHHHHHHHHhhcc-chhhhhcchhh---------hc----cccccchhhhhcccccccccccCCCcccccccc--Ccccc
Confidence 9999999999987 32222211100 00 02445568899999999999999999 444321 25567
Q ss_pred ccCCCCCCCCCCCCC
Q 005042 702 RLINLQKPSEPDFNA 716 (717)
Q Consensus 702 ~~~~~~~~~~~~~~~ 716 (717)
.++.++||+||||+.
T Consensus 625 ~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 625 ALLLLQKPADPDFSD 639 (727)
T ss_pred ccccCCCCCCCCccc
Confidence 788999999999984
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 717 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 3e-53 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-10 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 4e-10 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 4e-10 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 4e-10 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 5e-10 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 7e-10 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 7e-10 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 9e-10 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 2e-09 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 4e-09 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 7e-09 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 2e-08 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 3e-08 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 3e-04 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 2e-73
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 400 LTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPK 459
+ R + +D + ++ LP+ L +R+ W G+D L+++ P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 460 DLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLI 519
+LR DI HL L+ ++PLF + L ++ +K S C G ++R+GD + + +
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 520 IRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVE 579
GS+E + + +L +GD G + LT K + V+AL +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 580 AFSLRAEELKFVAS---QFRRLHSRQVQHTFRF 609
+ + L+ V ++ + ++QH +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 717 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.98 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.88 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.81 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.79 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.75 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.73 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.73 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.71 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.7 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.69 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.69 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.69 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.66 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.66 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.66 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.64 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.64 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.64 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.63 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.62 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.62 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.61 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.6 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.6 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.58 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.58 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.57 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.56 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.56 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.54 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.53 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.53 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.52 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.51 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.5 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.5 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.5 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.49 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.48 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.46 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.45 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.45 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.43 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.41 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.4 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.39 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.39 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.39 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.29 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.28 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.27 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.25 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.2 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.16 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.11 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.07 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.02 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.99 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.9 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.87 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.73 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.67 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.59 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.55 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.49 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.39 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.28 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.28 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.25 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.25 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.13 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.97 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.83 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.38 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=310.97 Aligned_cols=343 Identities=17% Similarity=0.223 Sum_probs=130.9
Q ss_pred ecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCC
Q 005042 70 IDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSS 149 (717)
Q Consensus 70 i~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s 149 (717)
+.|+|+.. +.++++++++++++.-+.-+ |-. .......+..++.++-++|++|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-
Confidence 45777743 66666666667666655522 211 112222344556666667899999998432 11
Q ss_pred cccCCCeEeeCHHHHHHHHHh-hhhHHHhhhc-cchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhhhhhh
Q 005042 150 RVFGRGELVVDPALISRRYFR-RLFLVDFLSV-LPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFPLISE 227 (717)
Q Consensus 150 ~~~~~G~lV~d~~~Ia~rYl~-~~F~iDlls~-lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~ 227 (717)
. .+|.+ .|.++|++++ +|+..++. + +. ...+++|++| +.|+.|..+..+.
T Consensus 66 ------~---------~~~~~~~~~i~Dl~~i~~p~~~~~~----~--~~---~~~r~lr~~R----~lrl~r~~~~~~~ 117 (355)
T 3beh_A 66 ------G---------VVRDRTPKIAIDVLAVLVPLAAFLL----D--GS---PDWSLYCAVW----LLKPLRDSTFFPV 117 (355)
T ss_dssp ------C---------SSCCCHHHHHHHHHHHHHHHHHHHS----C--CS---GGGGGGGGGG----GSHHHHTCSSHHH
T ss_pred ------c---------ceeccCcchHHHHHHHHHHHHHHHh----c--cc---hhHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 12333 4899999999 69865432 1 11 1122232211 2233333322222
Q ss_pred hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccccchhh
Q 005042 228 LKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQTREH 307 (717)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~ 307 (717)
+.+.. .. .....+..+++++++.|+.||++|.+.. |
T Consensus 118 l~~~l---~~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~----------------------------------~------ 153 (355)
T 3beh_A 118 LGRVL---AN-EARNLIGVTTLFGVVLFAVALAAYVIER----------------------------------D------ 153 (355)
T ss_dssp HHHHH---HH-THHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------T------
T ss_pred HHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------C------
Confidence 22211 11 1223344445566778999999998641 1
Q ss_pred hhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHH
Q 005042 308 IIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLV 387 (717)
Q Consensus 308 ~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~ 387 (717)
. ..+.+..|..|+||+++||||+||||++|.+..|++++++++++|++
T Consensus 154 -~-------------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~ 201 (355)
T 3beh_A 154 -I-------------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG 201 (355)
T ss_dssp -T-------------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHH
T ss_pred -C-------------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHH
Confidence 0 01224468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHH
Q 005042 388 LLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKR 467 (717)
Q Consensus 388 lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~ 467 (717)
++++++|.+.+.++....+ +++.+
T Consensus 202 ~~~~~~~~i~~~~~~~~~~----------------------------~~~~~---------------------------- 225 (355)
T 3beh_A 202 IFGLWAGILATGFYQEVRR----------------------------GDFVR---------------------------- 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------Hhhcc----------------------------
Confidence 9999999998877532111 00000
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCe
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 547 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 547 (717)
..+.++++|+|+++++++++.++..++.+.++|||.|+++||+++++|||.+|.++++..+ + ..+++||+
T Consensus 226 --~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~ 295 (355)
T 3beh_A 226 --NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAF 295 (355)
T ss_dssp --HHC---------------------------------------------------------------------------
T ss_pred --cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCE
Confidence 2467888999999999999999999999999999999999999999999999999998654 1 47899999
Q ss_pred ecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 548 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 548 fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|||.++ +.+.+ ++.+++|.++|+++.|++++|.++++++|++.....+...+
T Consensus 296 fGe~~~---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~ 347 (355)
T 3beh_A 296 FGEMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 347 (355)
T ss_dssp -------------------------------------------------------------
T ss_pred EeehHH---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999988 55655 88999999999999999999999999999887666555444
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 717 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 2e-25 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 2e-14 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 1e-11 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 2e-09 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 4e-09 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 6e-08 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 1e-07 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 4e-06 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 3e-05 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 3e-05 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 2e-04 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 7e-04 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 0.001 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 100 bits (249), Expect = 2e-25
Identities = 102/127 (80%), Positives = 111/127 (87%)
Query: 473 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 532
VRRVPLF NMDERLLDAICERLKP L TE + +VREGDPV EML IIRG LESVTTDGG
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66
Query: 533 RTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVA 592
R+GFYNR +LKEGDFCG+ELLTWALDPKS +NLP STRTV+AL EVEAF+L A+ELKFVA
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126
Query: 593 SQFRRLH 599
SQFRR
Sbjct: 127 SQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 717 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.8 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.78 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.73 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.7 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.7 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.69 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.68 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.66 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.62 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.59 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.58 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.57 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.51 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.5 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.37 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.24 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.1 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.92 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.63 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 97.22 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 95.93 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 86.09 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 83.82 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.3e-30 Score=252.53 Aligned_cols=188 Identities=26% Similarity=0.417 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhccCcCCCCC
Q 005042 404 TVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANM 483 (717)
Q Consensus 404 ~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~l 483 (717)
+++.++|+++++.+++||+.+++|++|+.||++|++|.|.. ++.+++.+++.||++|+.++..+++.++++++|+|.++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 35678999999999999999999999999999999999974 78899999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCC
Q 005042 484 DERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVT 563 (717)
Q Consensus 484 s~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~ 563 (717)
++.++..|+..+++..|.||++|+++||+++.+|||.+|.|++...+ +. ...+++|++||+.++ +.+.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~-~~-----~~~l~~G~~fGe~~~---~~~~~-- 148 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NK-----EMKLSDGSYFGEICL---LTRGR-- 148 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C-CC-----EEEECTTCEECHHHH---HHCSB--
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC-cc-----eeeeccceeeeeeec---cCCCc--
Confidence 99999999999999999999999999999999999999999987643 32 467899999999988 44454
Q ss_pred CCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHH
Q 005042 564 NLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 607 (717)
Q Consensus 564 n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~ 607 (717)
++++++|.++|+++.|++++|.++++++|++..+..+.+.
T Consensus 149 ----~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~ 188 (193)
T d1q3ea_ 149 ----RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI 188 (193)
T ss_dssp ----CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred ----ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 8899999999999999999999999999987655554433
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|