Citrus Sinensis ID: 005087

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-----

MKMRGEGGLRDHSLPKTWPRKRTLNGCERKRNLDNVVLIDVDSERLDNVILIDVPESLQHKIGSSSARMKGKKFQFRGIISIDDDEDVGCSEMDSDSSSSKSCPAPDHANKFEDLGDDECRVVKERNYAFGISKCKQASDKYPCSNRYGLFESSSSDTDGSDCEVMEGSFGKLHKEWEKAYLKRKFHVHQGKAGVQDQASPSSLNNDPRPDVDVEAGKSSEERSKTSFCCNSSNTGYKSQNSHPFVPTDDTNLDTASLNPGMERPSVQSDKKVGQEINSSSKEADFQFRRETVMEDPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETHDKNTSFQGVNQNFHHKNTSFQDKEASLCKSQQSSERHDNTEQVVPSENYKEFSQATSSCTSSPGKSHRTRTVFMEKAISGDPPVSSSQPSCDKRAECSVASSECNAGAIFEESVSFKIPSSGMPEVCNDKSGQQDAEKPDSEGISSCETQCADRESKQERPCSTEVKQQVIGSMSNYQLDAGADVRRTQGVSLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLTACH

cccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEcccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc

ccccEcccccccccccccccccHccccccccccccEEEEEEcccccccEEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccEEEEcccccccEEccccccccccccHHcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEHEHHHccccccccccccccccccccccEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc

mkmrgegglrdhslpktwprkrtlngcerkrnldnvvlidvdserldnvilidvpeslqhkigsssarmkgkkfqfrgiisidddedvgcsemdsdsssskscpapdhankfedlgddecrvVKERNYafgiskckqasdkypcsnryglfessssdtdgsdcevmegsFGKLHKEWEKAYLKRKFHvhqgkagvqdqaspsslnndprpdvdveagksseersktsfccnssntgyksqnshpfvptddtnldtaslnpgmerpsvqsdkkvgqeinssskeadFQFRretvmedpfsfsswwqsykhknngsgssfldgqspprpffwynrgeedkqhhhtsethdkntsfqgvnqnfhhkntsfqdkEASLcksqqsserhdnteqvvpsenykefsqatssctsspgkshrtRTVFMEKaisgdppvsssqpscdkraecsvassecnagaifeesvsfkipssgmpevcndksgqqdaekpdsegisscetqcadreskqerpcstevKQQVIGSMSnyqldagadvrrtqgvsltsAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGihvggsfrplSQEVHAAYKRALLrfhpdrasktdVRQQVEAEEKFKLISRMREKFLLTACH

mkmrgegglrdhslpktwprkrtlngcerkrnldNVVLIDVDSERLDNVIlidvpeslqhkigsssarmkgkkfqFRGIISIDDDEDVGCSEMDsdsssskscpapdHANKFEDLGDDECRVVKERNYAfgiskckqasdkypCSNRYGLFessssdtdgsdCEVMEGSFGKLHKEWEKAYLKRKFHVHQGKagvqdqaspsslnndprPDVDVeagksseersktsfccnssntgyksqnshpfVPTDDTNLDTASLNPgmerpsvqsdkkvgqeinssskeadfqfrrETVMEDPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETHDKNTSFQGVNQNFHHKNTSFQDKEASLCKSqqsserhdnteqvvpseNYKEfsqatssctsspgkshrTRTVFMEKaisgdppvsssqpscDKRAECSVASSECNAGAIFEESVSFKIPSSGMPEVCNDKSGQQDAEKPDSEGISSCETQCAdreskqerpcstevKQQVIGSMSNYQLDAGADVRRTQGVSLtsafaddiinereklketdeYKRAMEEEWASRQRQLQIQAEEAQRLrkkkraesmrlldmerrQKQRLEeiretqkkdeenmnlkekirIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLrfhpdrasktdvrqqveAEEKFKLISRMREKFLLTACH

MKMRGEGGLRDHSLPKTWPRKRTLNGCERKRNLDNVVLIDVDSERLDNVILIDVPESLQHKIGSSSARMKGKKFQFRGIISIDDDEDVGCSEMdsdssssksCPAPDHANKFEDLGDDECRVVKERNYAFGISKCKQASDKYPCSNRYGLFESSSSDTDGSDCEVMEGSFGKLHKEWEKAYLKRKFHVHQGKAGVQDQASPSSLNNDPRPDVDVEAGKSSEERSKTSFCCNSSNTGYKSQNSHPFVPTDDTNLDTASLNPGMERPSVQSDKKVGQEINSSSKEADFQFRRETVMEDPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETHDKNTSFQGVNQNFHHKNTSFQDKEASLCKSQQSSERHDNTEQVVPSENYKEFSQATSSCTSSPGKSHRTRTVFMEKAISGDPPVSSSQPSCDKRAECSVASSECNAGAIFEESVSFKIPSSGMPEVCNDKSGQQDAEKPDSEGISSCETQCADRESKQERPCSTEVKQQVIGSMSNYQLDAGADVRRTQGVSLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLTACH

***********************LNGCERKRNLDNVVLIDVDSERLDNVILIDVPES****************FQFRGIISI************************************ECRVVKERNYAFGISKCKQ********************************FGKLHKEWEKAYLKRKFHV*************************************************************************************************************FSFSSWWQSY********************FFWY****************************************************************************************************************************************************************************************************************LT*AFA*********************************************************************************KIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFH***********************************

********************************LDNVVLIDVDSERLDNVILIDVP***********************IISIDDDEDV****************************DDECRVVKERNY*************************************MEGSFGKLHKEWEKAYLK*******************************************************************************************************************SFSSWWQSY***************************************************************************************************************************************************************************************************************************************************************************************************************************************ELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRA********VEAEEKFKLISRMREKFLLTAC*

**********DHSLPKTWPRKRTLNGCERKRNLDNVVLIDVDSERLDNVILIDVPESLQHKIGSSSARMKGKKFQFRGIISIDDDED******************PDHANKFEDLGDDECRVVKERNYAFGISKCKQASDKYPCSNRYGLFE**********CEVMEGSFGKLHKEWEKAYLKRKFHV*******************PRPD***************SFCCNSSNTGYKSQNSHPFVPTDDTNLDTASLNPGM*********************ADFQFRRETVMEDPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGE***************TSFQGVNQNFHHKNTS*************************************************TRTVFMEKAI***********************SECNAGAIFEESVSFKIPSSGM*******************************************KQQVIGSMSNYQLDAGADVRRTQGVSLTSAFADDIINEREKLKETDEYKRA*************IQAE**********AESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDR*********VEAEEKFKLISRMREKFLLTACH

***********************L******RNLDNVVLIDVDSERLDNVILIDVPES****************FQFRGIISIDDD*******************************DDECRVVKERNYAFGISKCKQAS********************GSDCEVMEGSFGKLHKEWEKAYLKRKFH************************************************************************************************************DPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETHDKNTSFQGV*************************************************************T*F*********P**SSQPSCDK***CSVASSECNAGAIFEESVSFKIPSSGMP********************************************************AGADVRRTQGVSLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLTACH

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKMRGEGGLRDHSLPKTWPRKRTLNGCERKRNLDNVVLIDVDSERLDNVILIDVPESLQHKIGSSSARMKGKKFQFRGIISIDDDEDVGCSEMDSDSSSSKSCPAPDHANKFEDLGDDECRVVKERNYAFGISKCKQASDKYPCSNRYGLFESSSSDTDGSDCEVMEGSFGKLHKEWEKAYLKRKFHVHQGKAGVQDQASPSSLNNDPRPDVDVEAGKSSEERSKTSFCCNSSNTGYKSQNSHPFVPTDDTNLDTASLNPGMERPSVQSDKKVGQEINSSSKEADFQFRRETVMEDPFSFSSWWQSYKHKNNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETHDKNTSFQGVNQNFHHKNTSFQDKEASLCKSQQSSERHDNTEQVVPSENYKEFSQATSSCTSSPGKSHRTRTVFMEKAISGDPPVSSSQPSCDKRAECSVASSECNAGAIFEESVSFKIPSSGMPEVCNDKSGQQDAEKPDSEGISSCETQCADRESKQERPCSTEVKQQVIGSMSNYQLDAGADVRRTQGVSLTSAFADDxxxxxxxxxxxxxxxxxxxxxWASRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKIRIEVRKELCKLETTCIDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLTACH

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		715
224108651		724	predicted protein [Populus trichocarpa]	0.924	0.912	0.411	1e-118
297738123		620	unnamed protein product [Vitis vinifera]	0.482	0.556	0.502	1e-77
255541940		632	conserved hypothetical protein [Ricinus	0.289	0.327	0.622	2e-73
356502655		555	PREDICTED: uncharacterized protein LOC10	0.265	0.342	0.722	7e-72
356498050		660	PREDICTED: uncharacterized protein LOC10	0.281	0.304	0.644	5e-66
21618157		450	unknown [Arabidopsis thaliana]	0.250	0.397	0.657	1e-60
449516940		393	PREDICTED: uncharacterized protein LOC10	0.232	0.422	0.702	2e-60
30697793		630	chaperone DnaJ-domain containing protein	0.250	0.284	0.657	4e-60
6730632		679	F4N2.3 [Arabidopsis thaliana]	0.250	0.263	0.657	4e-60
297838679		593	heat shock protein binding protein [Arab	0.212	0.256	0.668	8e-60

>gi\|224108651\|ref\|XP_002314922.1\| predicted protein [Populus trichocarpa] gi\|222863962\|gb\|EEF01093.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 319/776 (41%), Positives = 417/776 (53%), Gaps = 115/776 (14%)

Query: 3   MRGEGGLRDHSLPKTWPRKRTLNGCERKRNLDNVVLIDVDSERLDNVILIDVPESLQHKI 62
           MRG+G  RD S  +T   K+T+ G E + +LDN+V+IDVDS+  +NVI++DVPESLQ K+
Sbjct: 1   MRGKGVSRDCSWRRTRSGKKTIGGREGQGSLDNIVVIDVDSDEFENVIIVDVPESLQQKL 60

Query: 63  GSSSARMKGKKFQFRGIISID-------------------DDEDVG---CSEMDSDSSSS 100
             SSA  +G +     IIS+D                   DD ++       +DSD +SS
Sbjct: 61  RGSSAVREGTRSPC--IISVDDDDDDDDDDEEEEDECYTVDDHEINEQVDGNLDSDGTSS 118

Query: 101 KSCPAPDHANKFEDLGDDECRVVKERNYAFGISKCKQA----------------SDKYPC 144
            S PA DH  K      D CRV +E    F + KC +                 ++K   
Sbjct: 119 PSSPASDHIEKPVHRDADGCRVAEENRPVFKLRKCNRTYAEKATSRNRYGLDSDAEKATS 178

Query: 145 SNRYGL---FESSSSDTDGSDCEVMEGSFGKLHKEWEKAYLKRKFHVHQGKAGVQDQASP 201
            NRYGL    ES SS+ + SDCEVMEGSFG++ ++WEKA LKRK    +G   + DQASP
Sbjct: 179 RNRYGLDSDAESDSSEDNTSDCEVMEGSFGEVREQWEKASLKRKSMRCKG---LDDQASP 235

Query: 202 SSLNNDPRPDVDVEAGKSSEERSKTSFCCNSSNTGYKSQNSHPFVPTDDTNLDTASLNPG 261
            S ++D  P+V+VE    +++ S+ + C +S N  +   NS       D  L     +  
Sbjct: 236 CSSHSDVHPNVEVE--NKTKQNSEPAVCSSSRNVNFGKVNSCASNDAGDGVLGGFPASAK 293

Query: 262 MERPSVQSDKKVGQEINSSSKE-----------ADFQFRRETVMEDPFSFSSWWQSYKHK 310
           M  P  + ++K G+  + S K             D  F  ET   D     + +Q+    
Sbjct: 294 MGNPFAKCNQK-GESFSGSWKSRADENIHFHWTGDDLFGGETFTGDGDISCNKFQTV--- 349

Query: 311 NNGSGSSFLDGQSPPRPFFWYNRGEEDKQHHHTSETH--DKNTSFQGVNQNFHHKNTSFQ 368
            NG G  F     PP P    N+ ++DKQ+H  +  H  ++NT+ +    N     + + 
Sbjct: 350 -NGPGIKF-----PPGPSSQSNQVKDDKQYHDRTCFHYMEQNTTTEHSFPNTQRGPSLYS 403

Query: 369 DK--------EASLCKSQQSSERHD-NTEQVVPSENYKEFSQATSSCTSSPGKSHRTRTV 419
           D           SL       E H+ N  Q+   E  KEF+Q  SSC +      R R  
Sbjct: 404 DDGKASDLNDNDSLPDGHHFDEIHNVNNSQIGSKEEDKEFTQVLSSCKTCSNDG-RCREK 462

Query: 420 FMEKAISGDPPVSSSQPSCDKRAECSVASSECNAGAIFEESVSFKIPSSGMPEVCNDKSG 479
           F          VS +Q S DK  E  VA                  PS    EV ++KS 
Sbjct: 463 F----------VSCTQSSEDKVVENVVA------------------PSWTTQEVSDEKSD 494

Query: 480 QQDAEKPDSEGISSCETQCADRESKQERPCSTEVKQQVIGSMSNYQLDAGADVRRTQGVS 539
               E+   E  S    QC D  SK+    S E K+      S+ Q     D        
Sbjct: 495 H--YERAPREKSS----QCHDTLSKRGISNSAEGKEAFTDFASSSQPCYERDPLCASHGD 548

Query: 540 LTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAESMRLLD 599
           L  +   DIINEREKLKETDEYK+A+EEEWA+RQRQLQIQAEE QRLRK+++AE++R+LD
Sbjct: 549 LLLSAERDIINEREKLKETDEYKQAIEEEWAARQRQLQIQAEEVQRLRKRRKAETLRILD 608

Query: 600 MERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRALGIHVGG 659
           MERRQKQRLEE+RETQKKDEEN+N+KE+ R+EVRKEL +LE TC +MASLLR LGIHV G
Sbjct: 609 MERRQKQRLEEVRETQKKDEENLNMKERFRVEVRKELYRLEVTCFNMASLLRGLGIHVEG 668

Query: 660 SFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLTACH 715
             +PL  +VHAAYKRALL+ HPDRASKTD+RQQVEAEEKFKLISRM+EKFL T+ H
Sbjct: 669 GLKPLPNQVHAAYKRALLKLHPDRASKTDIRQQVEAEEKFKLISRMKEKFLSTSYH 724

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297738123\|emb\|CBI27324.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255541940\|ref\|XP_002512034.1\| conserved hypothetical protein [Ricinus communis] gi\|223549214\|gb\|EEF50703.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356502655\|ref\|XP_003520133.1\| PREDICTED: uncharacterized protein LOC100778452 [Glycine max]	Back alignment and taxonomy information

>gi\|356498050\|ref\|XP_003517867.1\| PREDICTED: uncharacterized protein LOC100807478 [Glycine max]	Back alignment and taxonomy information

>gi\|21618157\|gb\|AAM67207.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449516940\|ref\|XP_004165504.1\| PREDICTED: uncharacterized protein LOC101229023 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30697793\|ref\|NP_849864.1\| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi\|20259443\|gb\|AAM13842.1\| unknown protein [Arabidopsis thaliana] gi\|22136808\|gb\|AAM91748.1\| unknown protein [Arabidopsis thaliana] gi\|332196760\|gb\|AEE34881.1\| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6730632\|gb\|AAF27053.1\|AC008262_2 F4N2.3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297838679\|ref\|XP_002887221.1\| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297333062\|gb\|EFH63480.1\| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		715
TAIR\|locus:2033233		630	AT1G69060 [Arabidopsis thalian	0.250	0.284	0.657	2.8e-84
DICTYBASE\|DDB_G0269732		812	DDB_G0269732 "DnaJ homolog sub	0.541	0.476	0.221	9.2e-08
SGD\|S000001800		406	SRP40 "Nucleolar serine-rich p	0.523	0.921	0.205	3.6e-06
DICTYBASE\|DDB_G0289719		1419	DDB_G0289719 "SFRS2-interactin	0.590	0.297	0.202	3.6e-06
ZFIN\|ZDB-GENE-060810-185		1914	im:7163673 "im:7163673" [Danio	0.218	0.081	0.264	3.8e-06
UNIPROTKB\|Q13111		956	CHAF1A "Chromatin assembly fac	0.202	0.151	0.305	9.9e-06
TAIR\|locus:504955937		734	AT2G22795 "AT2G22795" [Arabido	0.696	0.678	0.200	1.9e-05
UNIPROTKB\|E9PTW3		952	Dspp "Dentin sialophosphoprote	0.604	0.453	0.206	2.1e-05
UNIPROTKB\|K7GQ70		147	ZRSR2 "Uncharacterized protein	0.124	0.605	0.315	3.5e-05
DICTYBASE\|DDB_G0293562		527	DDB_G0293562 [Dictyostelium di	0.523	0.709	0.205	4.2e-05

TAIR\|locus:2033233 AT1G69060 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 595 (214.5 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
 Identities = 119/181 (65%), Positives = 147/181 (81%)

Query:   534 RTQGVSLTSAFADDIINEREKLKETDEYKRAMEEEWASRQRQLQIQAEEAQRLRKKKRAE 593
             + QG + T+   D ++N RE LKETDEYKRA EEEW SRQRQLQIQA+EAQ+ RK+++ E
Sbjct:   450 QVQGTNGTAPAIDVMLN-REILKETDEYKRAQEEEWESRQRQLQIQADEAQKQRKRRKLE 508

Query:   594 SMRLLDMERRQKQRLEEIRETQKKDEENMNLKEKIRIEVRKELCKLETTCIDMASLLRAL 653
             +MR L+MERRQK+R+EE+RETQKKDEENMN+KEK+R E+ K L  LE    +MA+LLR L
Sbjct:   509 NMRKLEMERRQKERVEEVRETQKKDEENMNMKEKVRAEITKSLKLLELKSFNMAALLRGL 568

Query:   654 GIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKT-DVRQQVEAEEKFKLISRMREKFLLT 712
             GI VGG   PL  EVHAAYKRA+L+FHPDRAS+  D++QQVEAEEKFKLI+RM++KF L 
Sbjct:   569 GIQVGGGISPLPNEVHAAYKRAVLKFHPDRASRGGDIKQQVEAEEKFKLIARMKDKFKLI 628

Query:   713 A 713
             A
Sbjct:   629 A 629

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

DICTYBASE\|DDB_G0269732 DDB_G0269732 "DnaJ homolog subfamily C member 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

SGD\|S000001800 SRP40 "Nucleolar serine-rich protein" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060810-185 im:7163673 "im:7163673" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13111 CHAF1A "Chromatin assembly factor 1 subunit A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

TAIR\|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|K7GQ70 ZRSR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		715
pfam00226		63	pfam00226, DnaJ, DnaJ domain	1e-04
smart00271		60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-04
pfam04156		186	pfam04156, IncA, IncA protein	2e-04
cd06257		55	cd06257, DnaJ, DnaJ domain or J-domain	4e-04
PRK07352		174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	0.001
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
pfam09726		680	pfam09726, Macoilin, Transmembrane protein	0.003
smart00935		140	smart00935, OmpH, Outer membrane protein (OmpH-lik	0.003

>gnl\|CDD\|215804 pfam00226, DnaJ, DnaJ domain	Back alignment and domain information

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)

Query: 653 LGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLIS 703
           LG+    S     +E+  AY++  L++HPD+           AEEKFK I+
Sbjct: 6   LGVPRDAS----DEEIKKAYRKLALKYHPDKNPGDP-----AAEEKFKEIN 47

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl\|CDD\|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain	Back alignment and domain information

>gnl\|CDD\|217933 pfam04156, IncA, IncA protein	Back alignment and domain information

>gnl\|CDD\|99751 cd06257, DnaJ, DnaJ domain or J-domain	Back alignment and domain information

>gnl\|CDD\|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|220365 pfam09726, Macoilin, Transmembrane protein	Back alignment and domain information

>gnl\|CDD\|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		715
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.73
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	99.63
PRK14288		369	chaperone protein DnaJ; Provisional	99.58
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	99.53
PRK14296		372	chaperone protein DnaJ; Provisional	99.53
PRK14286		372	chaperone protein DnaJ; Provisional	99.49
PRK14279		392	chaperone protein DnaJ; Provisional	99.49
PRK14282		369	chaperone protein DnaJ; Provisional	99.46
PRK14285		365	chaperone protein DnaJ; Provisional	99.46
PRK14277		386	chaperone protein DnaJ; Provisional	99.45
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.45
PRK14295		389	chaperone protein DnaJ; Provisional	99.45
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.44
PRK14299		291	chaperone protein DnaJ; Provisional	99.44
PRK14287		371	chaperone protein DnaJ; Provisional	99.43
PRK14283		378	chaperone protein DnaJ; Provisional	99.43
PRK14297		380	chaperone protein DnaJ; Provisional	99.43
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.43
PRK14276		380	chaperone protein DnaJ; Provisional	99.43
PRK14301		373	chaperone protein DnaJ; Provisional	99.43
PRK14294		366	chaperone protein DnaJ; Provisional	99.42
PRK14284		391	chaperone protein DnaJ; Provisional	99.42
PRK14278		378	chaperone protein DnaJ; Provisional	99.42
PTZ00037		421	DnaJ_C chaperone protein; Provisional	99.42
PRK10767		371	chaperone protein DnaJ; Provisional	99.42
PRK14298		377	chaperone protein DnaJ; Provisional	99.41
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.41
PRK14281		397	chaperone protein DnaJ; Provisional	99.41
PRK14291		382	chaperone protein DnaJ; Provisional	99.41
PRK14280		376	chaperone protein DnaJ; Provisional	99.4
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PRK10266		306	curved DNA-binding protein CbpA; Provisional	99.38
PRK14290		365	chaperone protein DnaJ; Provisional	99.38
PRK14292		371	chaperone protein DnaJ; Provisional	99.37
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	99.36
PRK14300		372	chaperone protein DnaJ; Provisional	99.35
PRK14289		386	chaperone protein DnaJ; Provisional	99.35
PRK14293		374	chaperone protein DnaJ; Provisional	99.29
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	99.27
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	99.24
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	99.23
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	99.22
PHA03102		153	Small T antigen; Reviewed	99.22
KOG0719		264	consensus Molecular chaperone (DnaJ superfamily) [	99.19
PRK05014		171	hscB co-chaperone HscB; Provisional	99.17
PTZ00100		116	DnaJ chaperone protein; Provisional	99.09
KOG0714		306	consensus Molecular chaperone (DnaJ superfamily) [	99.09
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	99.07
PRK01356		166	hscB co-chaperone HscB; Provisional	99.06
PRK03578		176	hscB co-chaperone HscB; Provisional	99.05
PRK00294		173	hscB co-chaperone HscB; Provisional	99.03
KOG0721		230	consensus Molecular chaperone (DnaJ superfamily) [	99.01
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	98.92
PHA02624		647	large T antigen; Provisional	98.87
KOG0722		329	consensus Molecular chaperone (DnaJ superfamily) [	98.86
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	98.79
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	98.78
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.57
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	98.57
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	98.5
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	98.46
PRK01773		173	hscB co-chaperone HscB; Provisional	98.35
KOG1150		250	consensus Predicted molecular chaperone (DnaJ supe	97.97
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.68
KOG0431		453	consensus Auxilin-like protein and related protein	97.6
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	97.01
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.99
KOG0723		112	consensus Molecular chaperone (DnaJ superfamily) [	96.57
PTZ00266		1021	NIMA-related protein kinase; Provisional	93.47
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	93.36
PTZ00121		2084	MAEBL; Provisional	92.82
PTZ00121		2084	MAEBL; Provisional	91.76
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	90.97
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	88.4
PF10376		221	Mei5: Double-strand recombination repair protein ;	88.01

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=99.73  E-value=3.2e-18  Score=179.27  Aligned_cols=56  Identities=32%  Similarity=0.489  Sum_probs=51.8

Q ss_pred             HHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087          647 ASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL  711 (715)
Q Consensus       647 aslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~  711 (715)
                      .++|++|||+.+    ||++||||||||||||||||||+++     ++||||||+|++|||||+-
T Consensus         4 ~dyYeiLGV~k~----As~~EIKkAYRkLA~kyHPD~n~g~-----~~AeeKFKEI~eAYEVLsD   59 (371)
T COG0484           4 RDYYEILGVSKD----ASEEEIKKAYRKLAKKYHPDRNPGD-----KEAEEKFKEINEAYEVLSD   59 (371)
T ss_pred             cchhhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhCC
Confidence            478999999966    9999999999999999999999974     5899999999999999974

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		715
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	5e-05
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	2e-04
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	6e-04
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	6e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 575 QLQIQAEEAQRLRKKKRAESMRLLDMERRQKQRLEEIRETQKKDEENM-----NLKEKIR 629
           Q     +E + +RK +  +  RL +++   K   +E RE  KKD E          EK +
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 630 IEVRKE 635
           I  R  
Sbjct: 136 INNRIA 141

PyMOL of 3lvg

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		715
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.61
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	99.57
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.57
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.56
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.55
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.54
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.54
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.54
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.53
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	99.53
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.51
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.51
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.51
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.5
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.5
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.49
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.48
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.47
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.47
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.47
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.47
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	99.46
2guz_A		71	Mitochondrial import inner membrane translocase su	99.45
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.44
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.42
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	99.41
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	99.4
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	99.38
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	99.38
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	99.33
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.19
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	99.1
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	99.06
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	98.54
2guz_B		65	Mitochondrial import inner membrane translocase su	98.39
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	91.07

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

Probab=99.61  E-value=6.8e-16  Score=131.29  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             ccHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhh
Q 005087          644 IDMASLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLL  711 (715)
Q Consensus       644 ~DMaslY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~  711 (715)
                      ..+.++|.+|||+.+    |+.++||+|||+|||+|||||++++    ...|+++|++|++||+||+.
T Consensus        13 ~~~~~~y~vLgv~~~----as~~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~   72 (88)
T 1iur_A           13 SILKEVTSVVEQAWK----LPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             SCHHHHHHHHHHTTS----SCSHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHh
Confidence            346789999999966    9999999999999999999999864    25799999999999999985

PyMOL of 1iur

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		715
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.57
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	99.55
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.54
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.54
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.49
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.41
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.33

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.9e-16  Score=125.52  Aligned_cols=56  Identities=34%  Similarity=0.523  Sum_probs=50.8

Q ss_pred             HHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccccchHHHHHHHHHHHHHHHHhhhc
Q 005087          648 SLLRALGIHVGGSFRPLSQEVHAAYKRALLRFHPDRASKTDVRQQVEAEEKFKLISRMREKFLLT  712 (715)
Q Consensus       648 slY~vLGV~~eGg~tAT~aEIKKAYRKLALKfHPDRn~~dd~req~eAEEKFKeISeAYEVL~~~  712 (715)
                      ++|++|||+++    ||.++||+|||+++++||||+++++.     .++++|++|++||+||+-.
T Consensus         4 dyY~vLgv~~~----As~~eIk~aYr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~vL~d~   59 (75)
T d1xbla_           4 DYYEILGVSKT----AEEREIRKAYKRLAMKYHPDRNQGDK-----EAEAKFKEIKEAYEVLTDS   59 (75)
T ss_dssp             CTTTTTCCSSS----CCHHHHHHHHHHHHHHTCCTTCTTTC-----HHHHHHHHHHHHHHHTTSS
T ss_pred             CHHHHcCCCCC----cCHHHHHHHHHHHHhhhhhhccCCCh-----HHHHHHHHHHHHHHhcCCH
Confidence            58999999976    99999999999999999999998753     6889999999999999743

PyMOL of d1xbla_

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure